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Copyright of Revista Chapingo Serie Ciencias Forestales is the property of Universidad Autonoma Chapingo and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

BaF is one of the potential candidates for the experimental search of the electric dipole moment of the electron (eEDM). The NL-eEDM collaboration is building a new experimental set up to measure the eEDM using the BaF molecule (The NL-eEDM collaboration, 2018 Eur. Phys. J. D 72 : 197). To analyze the results of such an experiment, one would require the accurate value of the molecular -odd interaction parameters that cannot be measured from any experiment. In this work, we report the precise value of the -odd interaction parameters of the BaF molecule obtained from the four-component relativistic coupled-cluster calculations. We also calculate the hyperfine structure (HFS) constants of the same molecule to assess the reliability of the reported molecular parameters. The calculated HFS constants show good agreement with the available experimental values. Further, the systematic effects of electron-correlation along with the roles of inner-core electrons and the virtual energy functions in the calculation of the studied properties of BaF are investigated. [ABSTRACT FROM AUTHOR]

Monitoring vegetation cover is an essential parameter for assessing various natural and anthropogenic hazards that occur at the vicinity of archaeological sites and landscapes. In this study, we used free and open access to Copernicus Earth Observation datasets. In particular, the proportion of vegetation cover is estimated from the analysis of Sentinel-1 radar and Sentinel-2 optical images, upon their radiometric and geometric corrections. Here, the proportion of vegetation based on the Radar Vegetation Index and the Normalized Difference Vegetation Index is estimated. Due to the medium resolution of these datasets (10 m resolution), the crowdsourced OpenStreetMap service was used to identify fully and non-vegetated pixels. The case study is focused on the western part of Cyprus, whereas various open-air archaeological sites exist, such as the archaeological site of "Nea Paphos" and the "Tombs of the Kings". A cross-comparison of the results between the optical and the radar images is presented, as well as a comparison with ready products derived from the Sentinel Hub service such as the Sentinel-1 Synthetic Aperture Radar Urban and Sentinel-2 Scene classification data. Moreover, the proportion of vegetation cover was evaluated with Google Earth red-green-blue free high-resolution optical images, indicating that a good correlation between the RVI and NDVI can be generated only over vegetated areas. The overall findings indicate that Sentinel-1 and -2 indices can provide a similar pattern only over vegetated areas, which can be further elaborated to estimate temporal changes using integrated optical and radar Sentinel data. This study can support future investigations related to hazard analysis based on the combined use of optical and radar sensors, especially in areas with high cloud-coverage. [ABSTRACT FROM AUTHOR]

Barrier-to-autointegration factor (BAF) is a highly conserved protein in metazoans that has multiple functions during the cell cycle. We found that BAF is SUMOylated at K6, and that this modification is essential for its nuclear localization and function, including nuclear integrity maintenance and DNA replication. K6-linked SUMOylation of BAF promotes binding and interaction with lamin A/C to regulate nuclear integrity. K6-linked SUMOylation of BAF also supports BAF binding to DNA and proliferating cell nuclear antigen and regulates DNA replication. SENP1 and SENP2 catalyze the de-SUMOylation of BAF at K6. Disrupting the SUMOylation and de-SUMOylation cycle of BAF at K6 not only disturbs nuclear integrity, but also induces DNA replication failure. Taken together, our findings demonstrate that SUMOylation at K6 is an important regulatory mechanism that governs the nuclear functions of BAF in mammalian cells. [ABSTRACT FROM AUTHOR]

Atmospheric particle size distributions were measured in Paphos, Cyprus, during the A-LIFE (a bsorbing aerosol layers in a changing climate: ageing, life time and dynamics) field experiment from 3 to 30 April 2017. The newly developed differential mobility analyser train (DMA-train) was deployed for the first time in an atmospheric environment for the direct measurement of the nucleation mode size range between 1.8 and 10 nm diameter. The DMA-train set-up consists of seven size channels, of which five are set to fixed particle mobility diameters and two additional diameters are obtained by alternating voltage settings in one DMA every 10 s. In combination with a conventional mobility particle size spectrometer (MPSS) and an aerodynamic particle sizer (APS) the complete atmospheric aerosol size distribution from 1.8 nm to 10 µ m was covered. The focus of the A-LIFE study was to characterize new particle formation (NPF) in the eastern Mediterranean region at a measurement site with strong local pollution sources. The nearby Paphos airport was found to be a large emission source for nucleation mode particles, and we analysed the size distribution of the airport emission plumes at approximately 500 m from the main runway. The analysis yielded nine NPF events in 27 measurement days from the combined analysis of the DMA-train, MPSS and trace gas monitors. Growth rate calculations were performed, and a size dependency of the initial growth rate (<10 nm) was observed for one event case. Fast changes of the sub-10 nm size distribution on a timescale of a few minutes were captured by the DMA-train measurement during early particle growth and are discussed in a second event case. In two cases, particle formation and growth were detected in the nucleation mode size range which did not exceed the 10 nm threshold. This finding implies that NPF likely occurs more frequently than estimated from studies where the lower nanometre size regime is not covered by the size distribution measurements. [ABSTRACT FROM AUTHOR]

Oxyfluoride glass and glass‐ceramics are being studied due to the possibility of their utilization in many applications, such as thermoluminescent dosimeters, optical fibers, fluorescent concentrators, and temperature sensors. In order to improve the properties of glass, they are often crystallized. For this crystallization to be effective, knowledge and control of the structure of the starting material is required. Much work was done on silicate glass; however, a great interest exists in obtaining these kinds of materials in other matrices such as germanates, phosphates, and borates. Here, we present a structural study of some oxyfluoride borate glass with different concentrations of PbF2 by means of Nuclear Magnetic Resonance (NMR), Raman, and Fourier Transform Infrared (FTIR) spectroscopies. We also analyzed glass‐crystallization using Differential Scanning Calorimetry (DSC). The crystallization study was complemented with the use of Transmission Electron Microscopy (TEM) and Selected Area Electron Diffraction (SAED), for the purpose of identifying possible mechanisms of crystallization. Our results indicate, from the structural point of view, that the glass present groups with one or two BO4 species, such as diborate or pentaborate. The small variation in the BO4 fraction with the increase in PbF2 concentration would be an indication of the formation of F−BO3/2 species. Oxyfluoride borate glass containing BaO as a cation modifier and 30% PbF2 represents a good starting point for obtaining glass‐ceramics with a narrow size distribution of BaF2 nanocrystals. We also propose that the possible mechanism for oxyfluoride borate glass crystallization started with a separation of phases. [ABSTRACT FROM AUTHOR]

The resemblance of the small marble head of Asklepios uncovered in Caesarea in 2015 to the portrait of Asklepios holding an egg from Nea Paphos brought me into the dispute concerning the significance of the egg held by the god in many of his images. The evidence examined made it clear that (a) any attempt to link the egg in Asklepios' hand with Glykon's epiphany and cult is incorrect; (b) the interpretation of the egg as a symbol of the universe was not in the mind of the sculptor who first put an egg in the hands of Asklepios and Hygieia; (c) the egg is nothing but the serpent's diet; (d) although Glykon was another aspect of the healing god he was never shown in Asklepios' guise; (e) and that in inscriptions - including those accompanying images of Asklepios serving an egg to his serpent - the god of medicine is associated with other deities than Glykon. Among the Caesarea types of Asklepios - discussed in the supplemental catalogue of images - the Amelung or its related Giustini type could have held an egg in the right hand; yet no evidence associating these images with Asklepios-Glykon in Roman Caesarea exist. Glykon was a rather common name/nickname, even before the invention of the god by Alexander of Abonoteichos. Individuals named Glykon, in Caesarea and elsewhere, had nothing to do with the god who bears the same name. In Caesarea Asklepios was not associated with Glykon but with Serapis; he ensured the health of the people of Roman Caesarea and was venerated in private dwellings and in the public sphere. Asklepios, for exemplifying the functional, hygienic, and medicinal merits of bathing, also served, along with his daughter Hygieia, the Caesarean Christians who used the bath in Insula W2S3 between the fifth and seventh century. [ABSTRACT FROM AUTHOR]

The Eastern necropolis of Nea Paphos is one of the most significant funerary landscapes of Cyprus, primarily because of its connection with the capital of the island during the Hellenistic and Roman times, and therefore of importance for the archaeology of the Eastern Mediterranean. The first systematic exploration of the site took place in the 1980s in the form of rescue excavations. Only limited research has been undertaken since then. This article discusses the necropolis based on unpublished material from the rescue excavations. It presents the tombs' architecture; partially reconstructs the burial ground; reveals the extension of the necropolis; triggers questions related to the dynamics between nearby necropolis, and its potential correlation to satellite habitation sites. [ABSTRACT FROM AUTHOR]

The rocky hillock of Fabrika in the north-easternmost part of ancient Nea Paphos, founded during the late 4th century BC, is of key importance for understanding the early phase of the town planning, but at the same time very difficult to be methodically explored. Both its eminent location and geology made it a natural source of building material throughout the ages, greatly hindering any accurate reconstruction of the site development. However, the data collected so far strongly suggest that the arrangement of the southern part of the hill was of a cultic nature. Therefore, on undertaking a joint project with Université d'Avignon, we decided to focus the research on the southern part of the hill where, near the top of an Early Hellenistic theatre, there are rock-cut outlines of a temple possibly devoted to Aphrodite Paphia. During two seasons of fieldwork (2018-2019), we retrieved some important information regarding both an original Hellenistic arrangement of the sacred area and its later (Late Roman/Byzantine and Medieval) use. Some new observations were also made regarding the topographical details of the area. [ABSTRACT FROM AUTHOR]

We have studied luminescence and electron paramagnetic resonance (EPR) spectra of manganese- and europium-activated fluorozirconate glasses in the ZrF4–BaF2–LaF3–AlF3–NaF (ZBLAN) system and fluorohafnate glasses in the HfF4–BaF2–LaF3–AlF3–NaF (HBLAN) system in order to assess the oxidation state and spatial distribution of the activator ions. The manganese luminescence band has been shown to shift from the green (545 nm) to the red (610 nm) spectral region, and additional lines in the EPR spectrum of manganese have been observed to emerge in the EPR spectrum of manganese as a result of BaCl2 substitution for BaF2 in the ZBLAN glass. The ratio of the concentration of free activator ions to that of clustered ions has been estimated quantitatively. It has been shown that, at high doping levels, the manganese and europium ions in the glasses are predominantly clustered, and only a small part of them are present as isolated ions. [ABSTRACT FROM AUTHOR]

Synovial Sarcomas (SS) are a type of Soft Tissue Sarcoma (STS) and represent 8–10% of all STS cases. Although SS can arise at any age, it typically affects younger individuals aged 15–35 and is therefore part of both pediatric and adult clinical practices. SS occurs primarily in the limbs, often near joints, but can present anywhere. It is characterized by the recurrent pathognomonic chromosomal translocation t(X;18)(p11.2;q11.2) that most frequently fuses SSX1 or SSX2 genes with SS18. This leads to the expression of the SS18-SSX fusion protein, which causes disturbances in several interacting multiprotein complexes such as the SWItch/Sucrose Non-Fermentable (SWI/SNF) complex, also known as the BAF complex and the Polycomb Repressive Complex 1 and 2 (PRC1 and PRC2). Furthermore, this promotes widespread epigenetic rewiring, leading to aberrant gene expression that drives the pathogenesis of SS. Good prognoses are characterized predominantly by small tumor size and young patient age. Whereas, high tumor grade and an increased genomic complexity of the tumor constitute poor prognostic factors. The current therapeutic strategy relies on chemotherapy and radiotherapy, the latter of which can lead to chronic side effects for pediatric patients. We will focus on the known roles of SWI/SNF, PRC1, and PRC2 as the main effectors of the SS18-SSX-mediated genome modifications and we present existing biological rationale for potential therapeutic targets and treatment strategies. [ABSTRACT FROM AUTHOR]

The Chip/LIM-domain binding protein (LDB)-single-stranded DNA-binding protein (SSDP) (ChiLS) complex controls numerous cell-fate decisions in animal cells, by mediating transcription of developmental control genes via remote enhancers. ChiLS is recruited to these enhancers by lineage-specific LIM-domain proteins that bind to its Chip/LDB subunit. ChiLS recently emerged as the core module of the Wnt enhanceosome, a multiprotein complex that primes developmental control genes for timely Wnt responses. ChiLS binds to NPFxD motifs within Pygopus (Pygo) and the Osa/ARID1A subunit of the BAF chromatin remodeling complex, which could synergize with LIM proteins in tethering ChiLS to enhancers. Chip/LDB and SSDP both contain N-terminal dimerization domains that constitute the bulk of their structured cores. Here, we report the crystal structures of these dimerization domains, in part aided by DARPin chaperones. We conducted systematic surface scanning by structure-designed mutations, followed by in vitro and in vivo binding assays, to determine conserved surface residues required for binding between Chip/LDB, SSDP, and Pygo-NPFxD. Based on this, and on the 4:2 (SSDP-Chip/LDB) stoichiometry of ChiLS, we derive a highly constrained structural model for this complex, which adopts a rotationally symmetrical SSDP2-LDB2-SSDP2 architecture. Integrity of ChiLS is essential for Pygo binding, and our mutational analysis places the NPFxD pockets on either side of the Chip/LDB dimer, each flanked by an SSDP dimer. The symmetry and multivalency of ChiLS underpin its function as an enhancer module integrating Wnt signals with lineage-specific factors to operate context-dependent transcriptional switches that are pivotal for normal development and cancer. [ABSTRACT FROM AUTHOR]

Copyright of Revista de Ciencias Agroveterinarias is the property of Revista de Ciencias Agroveterinarias and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

The dominant molluscan species Patella caerulea was selected as a trace metals bio indicator. During winter and summer 2016, its specimens were scraped from El-Mex Bay. Concentrations of heavy metals in the water, sediments and Patella caerulea (shells and soft tissues) were determined. Cadmium (Cd), lead (Pb), copper (Cu), iron (Fe), nickel (Ni), manganese (Mn) and zinc (Zn) concentrations (conc.) during summer were higher than winter except for shells which had Cd conc. in summer lower than winter, water showed Cu conc. in winter more than summer, Fe appeared higher conc. in water and Patella caerulea during winter more than summer, Mn had higher conc. in water and sediments than summer, Ni had higher conc. in water and soft tissues during winter than summer and Zn in water during summer is lower than winter. The bioaccumulation factors (BAFs) of Cd, Pb, Cu, Fe in Patella caerulea shells were more than soft tissues, also they were more in winter than summer except that of Cu in winter was lower than summer, BAF of Fe in soft tissues was higher than shells also that of Mn and Zn in Patella caerulea during winter were lower than summer, also BAFs of Mn in soft tissues and shells was nearly similar. The highest metal pollution index (MPI) for the studied species appeared in shells (105.95) followed by that of soft tissues during summer and winter (80.54 and 74.64, respectively). While MPI in shells during winter (46.13) came to the last. [ABSTRACT FROM AUTHOR]

Remediation with plants is a technology used to decrease soil or water contamination. In this study we assessed the remediation potential of two weed species (Chenopodium album and Tripleurospermum inodorum) in a moderately metal-contaminated area. Metal concentrations were studied in roots, stems and leaves, in order to assess correlations in metal concentrations between those in soil and plants. Furthermore, we calculated bioaccumulation factor (BAF), bioconcentration factor (BCF) and translocation factor (TF) values to study the accumulation of metals from soil to plants and translocation within plants. We found correlation in metal concentrations between soil and plants. The metal accumulation potential was low in both species, indicating low BAF and BCF values. In contrast, high TF values were found for Mn, Ni, Sr, Zn, Ba, Fe, Cu and Pb in C. album, and for Fe, Mn, Ni, Zn and Sr in T. inodorum. Our results demonstrated that the potential of C. album and T. inodorum might be limited in phytoextraction processes; however, when accumulated, metals are successfully transported to aboveground plant organs. Thus, to achieve the efficient remediation of metal-contaminated soils, removal of the aboveground plant organs is recommended, by which soil disturbance can also be avoided. [ABSTRACT FROM AUTHOR]

Purpose: To compare inter‐ and intraobserver reliability and intermodality agreement on quantification of geographic atrophy, using two routinely available quantification tools, based on blue‐light fundus autofluorescence (BAF) and spectral‐domain optical coherence tomography (SD‐OCT). Methods: Quantifications of atrophic lesions within the central 5 mm of 30 eyes from 30 patients (mean age: 76.1 years) were independently performed by two clinicians on BAF images using the region finder (RF; Heidelberg Engineering) and on SD‐OCT using the advanced retinal pigment epithelium tool (ARPET; Carl Zeiss Meditec) at baseline and follow‐up (mean interval: 336 days). Inter‐ and intraobserver reliability was determined by intraclass correlation coefficients (ICC) and Bland–Altmann plots. Additionally, graders rated the experienced difficulty of each measurement. Results: Intraclass correlation coefficients (ICC) showed excellent inter‐ and intraobserver reliability with values between 0.994 and 0.998 for RF and slightly higher values for ARPET of 0.997 and 0.999. Bland–Altman plots showed smaller variability for ARPET. Mean interobserver differences (95% CI) for size measurements were −0.11 (−0.27; 0.05) (baseline) and −0.05 mm² (−0.18; 0.08) (follow‐up) for RF and −0.04 (−0.14; 0.06) and −0.06 mm² (−0.14; 0.02) for ARPET. Measurements of lesions were on average 0.57 mm² (0.35; 0.79) or 7.6% larger in ARPET. Lesion size between graders did not differ significantly. There was no statistically significant difference in relative enlargement rates between methods. There was poor to moderate agreement between graders when rating the experienced difficulty of each measurement. Conclusion: Semi‐automated analysis of geographic atrophy with RF and ARPET is equally reliable and reproducible in clinical settings, despite both algorithms require frequent adjustment by users. The ARPET restricts size measurements to the central 5 mm, which limits its ability to fully track GA progression. Results of both tools are not interchangeable as measurements with ARPET result in larger lesion sizes. [ABSTRACT FROM AUTHOR]

As part of the A-LIFE (Absorbing aerosol layers in a changing climate: aging, LIFEtime and dynamics) campaign, ground-based measurements were carried out in Paphos, Cyprus, to characterize the abundance, properties, and sources of aerosol particles in general and cloud condensation nuclei (CCN) and ice-nucleating particles (INP) in particular. New particle formation (NPF) events with subsequent growth of the particles into the CCN size range were observed. Aitken mode particles featured κ values of 0.21 to 0.29, indicating the presence of organic materials. Accumulation mode particles featured a higher hygroscopicity parameter, with a median κ value of 0.57, suggesting the presence of sulfate and maybe sea salt particles mixed with organic carbon. A clear downward trend of κ with increasing supersaturation and decreasing dcrit was found. Super-micron particles originated mainly from sea-spray aerosol (SSA) and partly from mineral dust. INP concentrations (NINP) were measured in the temperature range from -6.5 to -26.5 ∘C , using two freezing array-type instruments. NINP at a particular temperature span around 1 order of magnitude below -20 ∘C and about 2 orders of magnitude at warmer temperatures (T>-18 ∘C). Few samples showed elevated concentrations at temperatures >-15 ∘C , which suggests a significant contribution of biological particles to the INP population, which possibly could originate from Cyprus. Both measured temperature spectra and NINP probability density functions (PDFs) indicate that the observed INP (ice active in the temperature range between -15 and -20 ∘C) mainly originate from long-range transport. There was no correlation between NINP and particle number concentration in the size range >500 nm (N>500nm). Parameterizations based on N>500nm were found to overestimate NINP by about 1 to 2 orders of magnitude. There was also no correlation between NINP and particle surface area concentration. The ice active surface site density (ns) for the polluted aerosol encountered in the eastern Mediterranean in this study is about 1 to 3 orders of magnitude lower than the ns found for dust aerosol particles in previous studies. This suggests that observed NINP PDFs such as those derived here could be a better choice for modeling NINP if the aerosol particle composition is unknown or uncertain. [ABSTRACT FROM AUTHOR]

The meat quality of Akkaraman, Bafra, and Bafra × Akkaraman F1 (BAF1) lamb genotypes was determined and then compared at slaughter weights of 34 and 42 kg. At the beginning of the study, 36 male lambs were fed intensively after weaning at approximately 3 months of age. Six animals of each genotype were slaughtered at each slaughter weight and certain meat quality characteristics, namely meat color, pH, cooking loss, tenderness, water holding capacity, and fatty acid profile, were investigated. The pH values of the M. longissimus dorsi (MLD) for the Bafra, Akkaraman, and BAF1 genotypes at 24 h after slaughter were 5.67, 5.53, and 5.54 for 34 kg slaughter weight, respectively, and 5.50, 5.56, and 5.53 for 42 kg slaughter weight, respectively. As the slaughter weight increased, the redness value (a*) of MLD at 24 h and M. semimembranosus at 0 and 24 h were increased for all the genotypes. The studied genotypes had similar values for tenderness and water holding capacity for both slaughter weight groups, but the Bafra genotype had the lowest cooking loss value at 42 kg slaughter weight. Polyunsaturated fatty acids and monounsaturated fatty acids levels of BAF1 were different between Akkaraman and Bafa genotypes for 34 kg slaughter weight, but the differences disappeared at 42 kg slaughter weight. In conclusion, the BAF1 genotype had similar meat quality values compared to Akkaraman and Bafra genotypes. It would be beneficial to do a sensory evaluation for determining if there were any flavor differences between BAF1 and the other genotypes. [ABSTRACT FROM AUTHOR]

Excessive amounts of sewage sludge produced in sewage treatment plants along with the ban on its storage and dumping require rapid solutions to the problem of sewage sludge management. An example of a rational and environmentally viable method may be provided by its application in agriculture and environmental management. The optimal solution is to use sludge as a fertiliser for industrial plants, including energy crops, that is, those not used in food production. For environmental reasons it is essential to control soil quality and condition following sludge application. Analyses of the residual effect of sewage sludge and bacteria, actinobacteria, fungi microbial inoculant (BAF) on selected physiological parameters of plants and microbial activity of soil were conducted in the years 2013-2015 on experimental fields of the Poznan University of Life Sciences. The results indicate that the application of sewage sludge increased yields and improved selected photosynthesis activity and biometric traits of willow. Among the tested combinations the best results were obtained following the application of sewage sludge combined with the BAF medium microbial inoculant. Similar dependencies were observed when evaluating soil microbial activity. [ABSTRACT FROM AUTHOR]

We have prepared glasses in the ZrF4–BaF2–LaF3–AlF3–NaF (ZBLAN) and HfF4–BaF2–LaF3–AlF3–NaF (HBLAN) systems in which fluorine anions are partially replaced by chlorine and bromine anions. Structural changes in the chlorine-substituted glasses have been investigated by Raman spectroscopy and their crystallization behavior has been studied by differential thermal analysis and X-ray diffraction. The results demonstrate a characteristic decrease in glass transition temperature (Tg) and the precipitation of fine-particle crystalline chloride and bromide phases in a temperature range well below the crystallization temperature (Tx) of the fluoride analogues. We have identified phases that crystallize during heat treatment of the glasses at various temperatures. [ABSTRACT FROM AUTHOR]

Dengue virus host factors (DENV HFs) that are essential for the completion of the infection cycle in the mosquito vector and vertebrate host represent potent targets for transmission blocking. Here we investigated whether known mammalian DENV HF inhibitors could influence virus infection in the arthropod vector A. aegypti. We evaluated the potency of bafilomycin (BAF; inhibitor of vacuolar H+-ATPase (vATPase)), mycophenolic acid (MPA; inhibitor of inosine-5′-monophosphate dehydrogenase (IMPDH)), castanospermine (CAS; inhibitor of glucosidase), and deoxynojirimycin (DNJ; inhibitor of glucosidase) in blocking DENV infection of the mosquito midgut, using various treatment methods that included direct injection, ingestion by sugar feeding or blood feeding, and silencing of target genes by RNA interference (RNAi). Injection of BAF (5 µM) and MPA (25 µM) prior to feeding on virus-infected blood inhibited DENV titers in the midgut at 7 days post-infection by 56% and 60%, and in the salivary gland at 14 days post-infection by 90% and 83%, respectively, while treatment of mosquitoes with CAS or DNJ did not affect susceptibility to the virus. Ingestion of BAF and MPA through a sugar meal or together with an infectious blood meal also resulted in various degrees of virus inhibition. RNAi-mediated silencing of several vATPase subunit genes and the IMPDH gene resulted in a reduced DENV infection, thereby indicating that BAF- and MPA-mediated virus inhibition in adult mosquitoes most likely occurred through the inhibition of these DENV HFs. The route and timing of BAF and MPA administration was essential, and treatment after exposure to the virus diminished the antiviral effect of these compounds. Here we provide proof-of-principle that chemical inhibition or RNAi-mediated depletion of the DENV HFs vATPase and IMPDH can be used to suppress DENV infection of adult A. aegypti mosquitoes, which may translate to a reduction in DENV transmission. Author Summary: Arboviruses utilize homologous host factors of the mammalian and insect cellular machinery to complete the infection cycle. Studies in both mammalian and insect cell lines have shown that virus infection can be suppressed through inhibition of host factors by chemical compounds that therefore could be developed into transmission blocking agents. However, similar studies have not been conducted in adult mosquitoes. Here we investigated the effect of four chemical compounds (bafilomycin, mycophenolic acid, castanospermine, and deoxynojirimycin), known to inhibit the host factors vacuolar H+-ATPase (vATPase), inosine-5′-monophosphate dehydrogenase (IMPDH) and glucosidases, on dengue virus replication in adult mosquitoes. We found that bafilomycin and mycophenolic acid suppressed dengue virus replication in adult mosquito guts when they were injected prior to dengue virus infection; however, castanospermine and deoxynojirimycin did not. Ingestion of bafilomycin and mycophenolic acid also inhibited virus replication. We showed that the predicted target genes of bafilomycin and mycophenolic acid function as virus host factors in adult mosquitoes through RNAi-mediated gene silencing. Inhibition of vATPase also decreases mosquito longevity and fecundity, thereby further compromising vector capacity. Our study demonstrated that chemical compounds or double stranded RNAs (dsRNA) can be used to suppress virus infection through inhibition of host factors in adult mosquitoes, thereby rendering such approaches interesting for the development of novel transmission-blocking strategies. [ABSTRACT FROM AUTHOR]

This study aims to investigate how alternations of the land surface temperature (LST) affects the normalized difference vegetation index (NDVI) in Paphos forest, Cyprus, using Landsat-5 and Landsat-8 imagery for the time periods 1993–2000 and 2013–2018, respectively. A total of 262 Landsat images were processed to compute the mean monthly NDVI and LST values and create a time series. Using the Cook's distance, the effect of missing values in the analysis of the time series were examined. Results from the cross-correlation and cross-variograms, decomposition model, and the BFAST algorithm were compared to produce reliable conclusions on forest changes and satellite, meteorological, and environmental data were combined to interpret the changes that occurred inside the forest. The decomposition analysis showed a decrease of 2.7% in the LST for the period 1993–2000 and an increase of 4.6% in the LST during the period 2013–2018. The NDVI trend is negatively correlated to the LST trend for both time periods. An increase in the LST trend was identified in November 1998 as well as in the NDVI trend in October 1994 and May 2014 that was caused by favorable climatic conditions. An increase in the NDVI trend from May 2014 to December 2015 may be related to reduced pityocampa attacks. An abrupt decrease was detected in December 2015 that was probably caused by the locust invasion that occurred in the island earlier that year. A positive correlation appears for LST and NDVI variables for time lags 4, 5, 6, 7, and 8 months. Overall, it was shown that LST and NDVI analysis is very promising for identifying potential forest decline. [ABSTRACT FROM AUTHOR]

Maturing male germ cells undergo a unique developmental process in spermiogenesis that replaces nucleosomal histones with protamines, the process of which is critical for testicular development and male fertility. The progress of this exchange is regulated by complex mechanisms that are not well understood. Now, with mouse genetic models, we show that barrier-to-autointegration factor-like protein (BAF-L) plays an important role in spermiogenesis and spermatozoal function. BAF-L is a male germ cell marker, whose expression is highly associated with the maturation of male germ cells. The genetic deletion of BAF-L in mice impairs the progress of spermiogenesis and thus male fertility. This effect on male fertility is a consequence of the disturbed homeostasis of histones and protamines in maturing male germ cells, in which the interactions between BAF-L and histones/protamines are implicated. Finally, we show that reduced testicular expression of BAF-L represents a risk factor of human male infertility. [ABSTRACT FROM AUTHOR]

This research investigated the combined use of sewage sludge (SS) and plant growth-promoting rhizobia (PGPR) for Ridge gourd (Luffa acutangula (L.) Roxb.) cultivated under field conditions. The different treatments of SS and PGPR such as 0% (soil as control), 5% SS, 5% SS + PGPR, 10% SS, and 10% SS + PGPR were applied to assess their impacts on seedling growth, biochemical response, and yield performance of Ridge gourd. The results showed that the highest seedling emergence (92.3 ± 2.1%), fresh biomass (9.6 ± 0.3 g), growth rate (1.4 ± 0.1 g/day), seedling length (15.5 ± 0.3 cm), root length (10.4 ± 0.3 cm), total chlorophyll (3.2 ± 0.1 mg/g), crop yield (13.8 ± 0.1 kg/plant), and average crop yield per harvest (2.8 ± 0.1 kg/plant) were observed in 10% SS + PGPR treatment. The enzyme activities of superoxide dismutase (SOD; µg/g) and catalase (CAT: µg/g) were significantly lowered after PGPR inoculation in higher SS treatments. The results of principal component (PC) and Euclidian clustered distance analyses showed a positive influence of SS dose on soil nutrient availability and Ridge gourd's growth, biochemical responses, and yield performance. Moreover, the elemental analysis showed that the bioaccumulation factor (BAF < 0.90) and health risk index (HRI < 0.40) of selected metal elements (Cd, Cr, Cu, Fe, Mn, and Zn) were within the permissible limits, indicating consumption of Ridge gourd fruits was safe. The outcomes of this study suggest the potential use of SS and PGPR for improved Ridge gourd production and contribution towards sustainable development goal (SDG) 12 on responsible consumption and production of vegetable crops. [ABSTRACT FROM AUTHOR]

The synthesis and characterization of multicolor light-emitting nanomaterials based on rare earths (RE3+) are of great importance due to their possible use in optoelectronic devices, such as LEDs or displays. In the present work, oxyfluoride glass-ceramics containing BaF2 nanocrystals co-doped with Tb3+, Eu3+ ions were fabricated from amorphous xerogels at 350 °C. The analysis of the thermal behavior of fabricated xerogels was performed using TG/DSC measurements (thermogravimetry (TG), differential scanning calorimetry (DSC)). The crystallization of BaF2 phase at the nanoscale was confirmed by X-ray diffraction (XRD) measurements and transmission electron microscopy (TEM), and the changes in silicate sol–gel host were determined by attenuated total reflectance infrared (ATR-IR) spectroscopy. The luminescent characterization of prepared sol–gel materials was carried out by excitation and emission spectra along with decay analysis from the 5D4 level of Tb3+. As a result, the visible light according to the electronic transitions of Tb3+ (5D4 → 7FJ (J = 6–3)) and Eu3+ (5D0 → 7FJ (J = 0–4)) was recorded. It was also observed that co-doping with Eu3+ caused the shortening in decay times of the 5D4 state from 1.11 ms to 0.88 ms (for xerogels) and from 6.56 ms to 4.06 ms (for glass-ceramics). Thus, based on lifetime values, the Tb3+/Eu3+ energy transfer (ET) efficiencies were estimated to be almost 21% for xerogels and 38% for nano-glass-ceramics. Therefore, such materials could be successfully predisposed for laser technologies, spectral converters, and three-dimensional displays. [ABSTRACT FROM AUTHOR]

Search for doped superconducting topological insulators is of prime importance for new quantum technologies. We report on fabrication of Sr-doped Bi 2 Te 3 single crystals. We found that Bridgman grown samples have p-type conductivity in the low 10 19 cm − 3 , high mobility of 4000 cm 2 V − 1 s − 1 , crystal structure independent on nominal dopant content, and no signs of superconductivity. We also studied molecular beam epitaxy grown Sr x Bi 2 − x Te 3 films on lattice matched (1 1 1) BaF 2 polar surface. Contrary to the bulk crystals thin films have n-type conductivity. Carrier concentration, mobility and c-lattice constant demonstrate pronounced dependence on Sr concentration x. Variation of the parameters did not lead to superconductivity. We revealed, that transport and structural parameters are governed by Sr dopants incorporation in randomly inserted Bi bilayers into the parent matrix. Thus, our data shed light on the structural position of dopant in Bi 2 Te 3 and should be helpful for further design of topological insulator-based superconductors. [ABSTRACT FROM AUTHOR]

The possibility of using complex structure modification for aluminium casting alloys' mechanical properties improvement was studied. The fluxes widely used in the industry are mainly intended for the modification of a single structural component of Al–Si alloys, which does not allow unifying of the modification process in a production environment. Thus, a new modifying flux that has a complex effect on the structure of Al–Si alloys has been developed. It consists of the following components: TiO2, containing a primary α-Al grain size modifier; BaF2 containing a eutectic silicon modifier; KF used to transform titanium and barium into the melt. The effect of the complex titanium dioxide-based modifier on the macro-, microstructure and the mechanical properties of industrial aluminium–silicon casting alloys containing 5%, 6%, 9%, 11% and 17% Si by weight was studied. It was found that the tensile strength (σB) of Al–Si alloys exceeds the similar characteristics for the alloys modified using the standard sodium-containing flux to 32%, and the relative elongation (δ) increases to 54%. The alloys' mechanical properties improvement was shown to be the result of the flux component's complex effect on the macro- and microstructure. The effect includes the simultaneous reduction in secondary dendritic arm spacing due to titanium, the refinement and decreasing size of silicon particles in the eutectic with barium and potassium, and the modifying of the primary silicon. The reliability of the studies was confirmed using up-to-date test systems, a significant amount of experimental data and the repeatability of the results for a large number of samples in the identical initial state. [ABSTRACT FROM AUTHOR]

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(1) Indocyanine green angiography (ICG-A) shows the presence of mid-phase hyperfluorescent area in central serous chorioretinopathy (CSCR). However, their exact meaning remains uncertain. (2) The clinical and multimodal imaging findings of 100 patients (133 eyes) with CSCR, including the enhanced-depth-imaging OCT (EDI-OCT), blue-light fundus autofluorescence (BAF), fluorescein and indocyanine green angiography (FA and ICG-A) findings were reviewed. Mid-phase hyperfluorescent plaques (MPHP) were defined as fairly well circumscribed hyperfluorescent regions during the midphase of the ICG-A. The association between MPHP and other clinical/imaging parameters was assessed using a multiple logistic regression analysis. (3) MPHP were detected in 59.4% of eyes with CSCR. The chronic form of the disease, the presence of irregular pigment epithelium detachments (PED) and the retinal pigment epithelium (RPE) changes seen on FA were associated with the presence of MPHP in the multivariate analysis (p = 0.015; p = 0.018 and p = 0.002; respectively). OCT showed RPE bulges or PED in 98.7% of areas with MPHP and BAF showed changes in 57.3% of areas with MPHP. (4) MPHP were associated with a chronic form of CSCR and colocated with PED or RPE bulges. MPHP should be recognized as a sign of early RPE dysfunction before it is detected with BAF. [ABSTRACT FROM AUTHOR]

The influence of erbium ion concentration on the optical properties of BaF2:ErF3 crystals was investigated. Four ErF3 concentration (0.05, 0.08, 0.15 and 0.5 mol% ErF3)-doped BaF2 crystals were obtained using the Bridgman technique. Room temperature optical absorption in the 250–850 nm spectral range was measured, and the photoluminescence (PL) and decay times were also investigated. The Judd–Ofelt (JO) approximation was used, taking into account four absorption peaks (at 377, 519, 653 and 802 nm). The JO intensity parameters, Ωt (t = 2, 4, 6), were calculated. The influence of the ErF3 concentration on the JO parameters, branching ratio, radiative transition probability and radiative lifetime were studied. The obtained results were compared with measured values and with those reported in the literature. Under excitation at 380 nm, the well-known green (539 nm) and red (668 nm) emissions were obtained. The calculated and experimental radiative lifetimes were in millisecond range for green and red emissions. The intensity of the PL spectra varied with the Er3+ ion concentration. The emission intensity increased linearly or exponentially, depending on the ErF3 concentration. Under excitation at 290 nm, separate to the green and red emissions, a new UV emission band (at 321 nm) was obtained. Other research has not reported the UV emission or the influence of ErF3 concentration on emission behavior. [ABSTRACT FROM AUTHOR]

The purification effect of a biological aerated filter (BAF) mainly comes from the microorganisms in the reactor. Understanding the correlation between microbial community characteristics and environmental factors along the filter has great significance for maintaining good operation and improving the removal efficiency of the filter. A two-stage BAF was employed to treat domestic sewage under organic loads of 1.02 and 1.55 kg/m3·d for 15 days each. 16S rDNA high-throughput sequencing technology and redundancy analysis were applied to explore the correlation between microbial community characteristics and environmental variables. The results showed that: (1) the crucial organic-degrading bacteria in the A-stage filter were of the genus Novosphingobium, which had a significant increase in terms of relative abundance at sampling outlet A3 (135 cm of the filling height) after the increase of organic load; (2) the microbial communities at different positions in the B-stage filter were similarly affected by environmental factors, and the main bacteria associated with nitrogen removal in the B-stage filter were Zoogloea and Rhodocyclus; and (3) to improve the pollutant removal performance of this two-stage biological aerated filter, a strategy of adding an internal circulation in the B-stage filter can be adopted. [ABSTRACT FROM AUTHOR]

Background: To explore the effects of topographical modification of titanium substrates at submicron level by oxalic acid treatment on bone quality and quantity around dental implants in rabbit tibiae. Methods: A total of 60 blasted CP-grade IV titanium dental implants were used. Twenty-eight control implant surfaces were treated with a mixture of HCl/H2SO4, whereas 28 other test implant surfaces were treated with oxalic acid following HCl/H2SO4 treatment. Two randomly selected sets of control or test implants were placed in randomly selected proximal tibiae of 14 female Japanese white rabbits. Euthanasia was performed 4 and 8 weeks post-implant placement. Bone to implant contact (BIC), bone area fraction (BAF), ratios of mature and immature bone to total bone, and the amount and types of collagen fibers were evaluated quantitatively. Two control and two test implants were used to analyze surface characteristics. Results: Treatment by oxalic acid significantly decreased Sa and increased Ra of test implant surfaces. BIC in test implants was increased without alteration of BAF and collagen contents at 4 and 8 weeks after implant placement when compared with control implants. The ratios of immature and mature bone to total bone differed significantly between groups at 4 weeks post-implantation. Treatment by oxalic acid increased type I collagen and decreased type III collagen in bone matrices around test implants when compared with control implants at 8 weeks after implant placement. The effects of topographical changes of implant surfaces induced by oxalic acid on BAF, mature bone, collagen contents, and type I collagen were significantly promoted with decreased immature bone formation and type III collagen in the later 4 weeks post-implantation. Conclusions: Treatment of implant surfaces with oxalic acid rapidly increases osseointegration from the early stages after implantation. Moreover, submicron topographical changes of dental implants induced by oxalic acid improve bone quality based on bone maturation and increased production of type I collagen surrounding dental implants in the late stage after implant placement. [ABSTRACT FROM AUTHOR]

Genomic studies performed in cancer patients and tumor-derived cell lines have identified a high frequency of alterations in components of the mammalian switch/sucrose non-fermentable (mSWI/SNF or BAF) chromatin remodeling complex, including its core catalytic subunit, SMARCA4. Cells exhibiting loss of SMARCA4 rely on its paralog, SMARCA2, making SMARCA2 an attractive therapeutic target. Here we report the genomic profiling of solid tumors from 131,668 cancer patients, identifying 9434 patients with one or more SMARCA4 gene alterations. Homozygous SMARCA4 mutations were highly prevalent in certain tumor types, notably non-small cell lung cancer (NSCLC), and associated with reduced survival. The large sample size revealed previously uncharacterized hotspot missense mutations within the SMARCA4 helicase domain. Functional characterization of these mutations demonstrated markedly reduced remodeling activity. Surprisingly, a few SMARCA4 missense variants partially or fully rescued paralog dependency, underscoring that careful selection criteria must be employed to identify patients with inactivating, homozygous SMARCA4 missense mutations who may benefit from SMARCA2-targeted therapy. SMARCA4 is the core catalytic subunit of the mammalian SWI/SNF complex and is known to be mutated in many cancers. Here, the authors detect more than 10,000 SMARCA4 variants across different cancer subtypes and find hotspot mutations throughout the helicase domain, which reduce remodeling activity. [ABSTRACT FROM AUTHOR]

Antioxidants are normally utilized to extend the service life of polymers due to the strong reducibility of the phenolic hydroxyl group of the hindered phenol structure. Inspired by this characteristic, we have introduced green tea polyphenol (TP) supported on a silica surface containing considerable phenolic hydroxyl groups to obtain a novel biomass anti-aging filler (BAF, denoted as silica-s-TP) to reinforce and improve the anti-aging property of rubber composites. The applying of silica-s-TP to enhance the thermal-oxidative stability and ultraviolet light (UV) aging resistance of styrene-butadiene rubber (SBR) was evaluated. The hybrid biomass anti-aging filler could not only uniformly disperse in the rubber matrix, giving rise to the excellent mechanical properties, but also enhance the properties of thermal-oxidative stability and UV aging resistance with the increasing silica-s-TP content of SBR distinctly. This study provides a mild and environmentally friendly strategy to prepare the functional biomass filler, which could be applied as not only a reinforcement filler but also an anti-aging additive in "green rubber". [ABSTRACT FROM AUTHOR]

It is well known that the optimization of the basic properties of materials is related not only to changes of the substance of the material itself, but can also predict the change of their surface. In this regards, the search for, and study of, new nanostructured coatings based on the laser deposition method becomes extremely promising. Here, we used a laser-oriented deposition technique in order to place carbon nanotubes in a vertical position on the BaF2 surface to modify it. Such modification affected the increasing material transparency, connected with a decrease of the reflection via change the Fresnel losses; hydrophobicity and microhardness as well. Characteristics of the obtained material were studied via spectral analysis, AFM-method, wetting-angle measurements, microhardness estimations to support the possible covalent bonding between the carbon atoms and the interface materials atoms. Moreover, the quantum–chemical calculations completely confirmed the experimental results of the changes of electronic properties of BaF2 substrate after deposition of the CNTs. As the results novel optimized structure based on BaF2 is presented to be used in general optoelectronics, cosmos and laser technique as well. [ABSTRACT FROM AUTHOR]

This study focuses on the quantification of climate change (CC) effects on agricultural water availability in Cyprus. Projections of climatic variables, based on Regional Climate Models (RCMs) forced by the Representative Concentration Pathways (RCPs) 4.5 and 8.5, were used as CC driving forces affecting water availability. Groundwater flow models were developed for specific high-interest agricultural areas in Larnaca and Paphos to assess the CC impacts on these groundwater systems, while the Standardized Precipitation–Evapotranspiration Index (SPEI) analysis was also adopted, for the first time in Cyprus, to assess future trends of water reservoir storage under the projected climatic conditions. Considering the current cultivation and irrigation practices, a decrease in groundwater level close to 1 m and further inland seawater intrusion in Larnaca aquifers are expected, while in Paphos' aquifers, the predicted water table fluctuations are not significant. Additionally, SPEI values at the Asprokemos and Kouris dams are correlated with water storage measurements, showing that a SPEI downward trend observed in these reservoirs could set off an alarm to the water authorities with respect to water availability as more severe drought events are expected in the future. The expected pressure on surface waters imposes the need for an improved water management plan that will not depend on the further exploitation of groundwater. [ABSTRACT FROM AUTHOR]

The use of medium resolution, open access, and freely distributed satellite images, such as those of Landsat, is still understudied in the domain of archaeological research, mainly due to restrictions of spatial resolution. This investigation aims to showcase how the synergistic use of Landsat and Sentinel optical sensors can efficiently support archaeological research through object-based image analysis (OBIA), a relatively new scientific trend, as highlighted in the relevant literature, in the domain of remote sensing archaeology. Initially, the fusion of a 30 m spatial resolution Landsat 8 OLI/TIRS Level-2 and a 10 m spatial resolution Sentinel 2 Level-1C optical images, over the archaeological site of "Nea Paphos" in Cyprus, are evaluated in order to improve the spatial resolution of the Landsat image. At this step, various known fusion models are implemented and evaluated, namely Gram–Schmidt, Brovey, principal component analysis (PCA), and hue-saturation-value (HSV) algorithms. In addition, all four 10 m available spectral bands of the Sentinel 2 sensor, namely the blue, green, red, and near-infrared bands (Bands 2 to 4 and Band 8, respectively) were assessed for each of the different fusion models. On the basis of these findings, the next step of the study, focused on the image segmentation process, through the evaluation of different scale factors. The segmentation process is an important step moving from pixel-based to object-based image analysis. The overall results show that the Gram–Schmidt fusion method based on the near-infrared band of the Sentinel 2 (Band 8) at a range of scale factor segmentation to 70 are the optimum parameters for the detection of standing visible monuments, monitoring excavated areas, and detecting buried archaeological remains, without any significant spectral distortion of the original Landsat image. The new 10 m fused Landsat 8 image provides further spatial details of the archaeological site and depicts, through the segmentation process, important details within the landscape under examination. [ABSTRACT FROM AUTHOR]

The charge carrier behavior and dielectric properties of BaF2:Tb3+ nanocrystals have been studied by alternating current (AC) impedance spectroscopy. The electron and ion coexist in the transport process. The F− ion's contribution to the total conduction increases with the doping concentration up to 4% and then decreases. Tb doping leads to the increase of defect quantities and a variation of charge carrier transport paths, which causes the increase of the ion diffusion coefficient and the decreases of bulk and grain boundary resistance. When the Tb-doped concentration is higher than 4%, the effect of deformation potential scattering variation on the transport property is dominant, which results in the decrease of the ion diffusion coefficient and increases of bulk and grain boundary resistance. The conduction properties of our BaF2:Tb3+ nanocrystals are compared with previous results that were found for the single crystals of rare earth-doped BaF2. Tb doping causes increases of both the quantity and the probability of carrier hopping, and it finally leads to increases of BaF2 nanocrystals' permittivity in the low frequency region. [ABSTRACT FROM AUTHOR]

Wastewater treatment plants (WWTPs) are points of control for the environmental dissemination of antimicrobial resistant bacteria. Vancomycin-resistant enterococci (VRE) were used as indicators of antimicrobial resistance (AMR) in two WWTPs (biologically aerated filter (BAF) and conventional activated sludge (CAS)) in the same municipality. The removal and abundance of enterococci and VRE as well as the species and antimicrobial resistance profiles of VRE were assessed. Enterococci and VRE from the primary and final effluents were enumerated. Results were assessed from an ecological context. VRE was not selected for by either WWTP but the BAF system outperformed the CAS system for the removal of enterococci/VRE. Enterococcus faecalis (n = 151), E. faecium (n = 94) and E. casseliflavus/E. gallinarum (n = 59) were the dominant VRE species isolated. A decrease in levofloxacin resistance in enterococci was observed in the BAF WWTP. An increase in nitrofurantoin resistant (p < 0.001) and a decrease in quinupristin/dalfopristin (p = 0.003) and streptomycin (p = 0.022) resistant enterococci were observed in the CAS WWTP, corresponding to a shift of VRE from E. faecalis to E. faecium. Wastewater treatment processes can be managed to limit the dissemination of antimicrobial resistance determinants into the surrounding environment. [ABSTRACT FROM AUTHOR]

The ErF3-doped oxyfluoride phospho-tellurite glasses in the (40-x) TeO2-10P2O5-45 (BaF2-ZnF2) -5Na2O-xErF3 system (where x = 0.25, 0.50, 0.75, 1.00, and 1.25 mol%) have been prepared by the conventional melt-quenching method. The effect of erbium trifluoride addition on thermal, structure, and spectroscopic properties of oxyfluoride phospho-tellurite precursor glass was studied by differential scanning calorimetry (DSC), Fourier-transform infrared (FTIR), and Raman spectroscopy as well as emission measurements, respectively. The DSC curves were used to investigate characteristic temperatures and thermal stability of the precursor glass doped with varying content of ErF3. FTIR and Raman spectra were introduced to characterize the evolution of structure and phonon energy of the glasses. It was found that the addition of ErF3 up to 1.25 mol% into the chemical composition of phospho-tellurite precursor glass enhanced 2.7 µm emission and upconversion. By controlled heat-treatment process of the host glass doped with the highest content of erbium trifluoride (1.25 mol%), transparent erbium-doped phospho-tellurite glass-ceramic (GC) was obtained. X-ray diffraction analysis confirmed the presence of BaF2 nanocrystals with the average 16 nm diameter in a glass matrix. Moreover, MIR, NIR, and UC emissions of the glass-ceramic were discussed in detail and compared to the spectroscopic properties of the glass doped with 1.25 mol% of ErF3 (the base glass). [ABSTRACT FROM AUTHOR]

Background: Nicolaides-Baraitser syndrome (NCBRS) is a neurodevelopmental disorder caused by pathogenic sequence variants in SMARCA2 which encodes the catalytic component of the chromatin remodeling BAF complex. Pathogenic variants in genes that encode epigenetic regulators have been associated with genome-wide changes in DNA methylation (DNAm) in affected individuals termed DNAm signatures. Methods: Genome-wide DNAm was assessed in whole-blood samples from the individuals with pathogenic SMARCA2 variants and NCBRS diagnosis (n = 8) compared to neurotypical controls (n = 23) using the Illumina MethylationEPIC array. Differential methylated CpGs between groups (DNAm signature) were identified and used to generate a model enabling classification variants of uncertain significance (VUS; n = 9) in SMARCA2 as "pathogenic" or "benign". A validation cohort of NCBRS cases (n = 8) and controls (n = 96) demonstrated 100% model sensitivity and specificity. Results: We identified a DNAm signature of 429 differentially methylated CpG sites in individuals with NCBRS. The genes to which these CpG sites map are involved in cell differentiation, calcium signaling, and neuronal function consistent with NCBRS pathophysiology. DNAm model classifications of VUS were concordant with the clinical phenotype; those within the SMARCA2 ATPase/helicase domain classified as "pathogenic". A patient with a mild neurodevelopmental NCBRS phenotype and a VUS distal to the ATPase/helicase domain did not score as pathogenic, clustering away from cases and controls. She demonstrated an intermediate DNAm profile consisting of one subset of signature CpGs with methylation levels characteristic of controls and another characteristic of NCBRS cases; each mapped to genes with ontologies consistent with the patient's unique clinical presentation. Conclusions: Here we find that a DNAm signature of SMARCA2 pathogenic variants in NCBRS maps to CpGs relevant to disorder pathophysiology, classifies VUS, and is sensitive to the position of the variant in SMARCA2. The patient with an intermediate model score demonstrating a unique genotype-epigenotype-phenotype correlation underscores the potential utility of this signature as a functionally relevant VUS classification system scalable beyond binary "benign" versus "pathogenic" scoring. This is a novel feature of DNAm signatures that could enable phenotypic predictions from genotype data. Our findings also demonstrate that DNAm signatures can be domain-specific, highlighting the precision with which they can reflect genotypic variation. [ABSTRACT FROM AUTHOR]

Emerin is an essential LEM (LAP2, Emerin, MAN1) domain protein in metazoans and an integral membrane protein associated with inner and outer nuclear membranes. Mutations in the human EMD gene coding for emerin result in the rare genetic disorder: Emery–Dreifuss muscular dystrophy type 1 (EDMD1). This disease belongs to a broader group called laminopathies—a heterogeneous group of rare genetic disorders affecting tissues of mesodermal origin. EDMD1 phenotype is characterized by progressive muscle wasting, contractures of the elbow and Achilles tendons, and cardiac conduction defects. Emerin is involved in many cellular and intranuclear processes through interactions with several partners: lamins; barrier-to-autointegration factor (BAF), β-catenin, actin, and tubulin. Our study demonstrates the presence of the emerin fraction which associates with mitotic spindle microtubules and centrosomes during mitosis and colocalizes during early mitosis with lamin A/C, BAF, and membranes at the mitotic spindle. Transfection studies with cells expressing EGFP-emerin protein demonstrate that the emerin fusion protein fraction also localizes to centrosomes and mitotic spindle microtubules during mitosis. Transient expression of emerin deletion mutants revealed that the resulting phenotypes vary and are mutant dependent. The most frequent phenotypes include aberrant nuclear shape, tubulin network mislocalization, aberrant mitosis, and mislocalization of centrosomes. Emerin deletion mutants demonstrated different chromatin binding capacities in an in vitro nuclear assembly assay and chromatin-binding properties correlated with the strength of phenotypic alteration in transfected cells. Aberrant tubulin staining and microtubule network phenotype appearance depended on the presence of the tubulin binding region in the expressed deletion mutants. We believe that the association with tubulin might help to "deliver" emerin and associated membranes to decondensing chromatin. Preliminary analyses of cells from Polish patients with EDMD1 revealed that for several mutations thought to be null for emerin protein, a truncated emerin protein was present. We infer that the EDMD1 phenotype may be strengthened by the toxicity of truncated emerin expressed in patients with certain nonsense mutations in EMD. [ABSTRACT FROM AUTHOR]