14,129 results on '"Yamagishi, M."'
Search Results
2. Nobeyama Cygnus-X Survey: Physical Properties of C$^{18}$O clumps in DR-6(W), DR-9 and DR-13S regions
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Toledano--Juárez, I., de la Fuente, E., Kawata, K., Trinidad, M. A., Tafoya, D., Yamagishi, M., Takekawa, S., Ohnishi, M., Nishimura, A., Kato, S., Sako, T., Takita, M., and Yadav, R. K.
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Solar and Stellar Astrophysics - Abstract
Cygnus-X is considered a region of interest for high-energy astrophysics, since the Cygnus OB2 association has been confirmed as a PeVatron in the Cygnus cocoon. In this research note, we present new high-resolution (16'') $^{12,13}$CO(J=1$\rightarrow$0) and C$^{18}$O (J=1$\rightarrow$0) observations obtained with the Nobeyama 45-m radiotelescope, to complement the Nobeyama Cygnus-X Survey. We discovered 19 new C$^{18}$O clumps associated with the star-forming regions DR-6W, DR-9, and DR13S. We present the physical parameters of these clumps, which are consistent with the neighboring covered regions. We confirm the clumpy nature of these regions and of a filament located between DR6 and DR6W. These results strongly suggest that star formation occurs in these regions with clumps of sizes $\sim$10$^{-1}$ pc, masses $\sim$10$^2$ M$_\odot$, and H$_2$ densities of $\sim$10$^4$ cm$^{-3}$., Comment: 8 pages, 3 Figures, 1 Table. https://pos.sissa.it/444/631/pdf
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- 2023
3. A systematic study of silicate absorption features in heavily obscured AGNs observed by Spitzer/IRS
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Tsuchikawa, T., Kaneda, H., Oyabu, S., Kokusho, T., Kobayashi, H., Yamagishi, M., and Toba, Y.
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Astrophysics - Astrophysics of Galaxies - Abstract
Heavily obscured active galactic nuclei (AGNs) are known to show deep silicate absorption features in the mid-infrared (IR) wavelength range of 10--20~$\mu$m. The detailed profiles of the features reflect the properties of silicate dust, which are likely to include information on AGN activities obscured by large amounts of dust. In order to reveal AGN activities obscured by large amounts of dust, we select 115 mid-IR spectra of heavily obscured AGNs observed by Spitzer/IRS, and systematically analyze the composition of silicate dust by spectral fitting using the 10~$\mu$m amorphous and 23~$\mu$m crystalline bands. We find that the main component of the silicate dust obscuring AGNs is amorphous olivine, the median mass column density of which is one order of magnitude higher than those of the minor components of amorphous pyroxene and crystalline forsterite. The median mass fraction of the amorphous pyroxene, $\sim$2\%, is significantly lower than that of the diffuse interstellar medium (ISM) dust in our Galaxy, while the median mass fraction of the crystalline forsterite, $\sim$6\%, is higher than that of the diffuse ISM dust. We also find that the mass fractions of the amorphous pyroxene and the crystalline forsterite positively correlate with each other. The low mass fraction of the amorphous pyroxene suggests that the obscuring silicate dust is newly formed, originating from starburst activities. The relatively high mass fraction of crystalline forsterite implies that the silicate dust is processed in the high temperature environment close to the nucleus and transported to outer cooler regions by molecular outflows. The positive correlation between the mass fractions can be naturally explained considering that amorphous pyroxene is transformed from crystalline forsterite by ion bombardments., Comment: 22 pages, 6 figures, accepted for publication in A&A
- Published
- 2021
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4. Hydrogen recombination near-infrared line mapping of Centaurus A with IRSF/SIRIUS
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Katayama, R., Kaneda, H., Kokusho, T., Morihana, K., Suzuki, T., Oyabu, S., Yamagishi, M., and Tsuchikawa, T.
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Astrophysics - Astrophysics of Galaxies - Abstract
Centaurus A (Cen A) is one of the most famous galaxies hosting an active galactic nucleus (AGN), where the interaction between AGN activities and surrounding interstellar and intergalactic media has been investigated. Recent studies reported detections of the H{\alpha} emission from clouds in the galactic halo toward the northeast and southwest of the nucleus of Cen A, suggesting that AGN jets may have triggered star formation there. We performed near-infrared line mapping of Cen A with the IRSF 1.4-m telescope, using the narrow-band filter tuned for Pa{\beta}, from which we find that the Pa{\beta} emission is not detected significantly from either northeast or southwest regions. The upper limit of the Pa{\beta}/H{\alpha} ratio in the northeast region is compatible with that expected for a typical HII region, in line with the scenario that AGNs have triggered star formation there. On the other hand, the upper limit of Pa{\beta}/H{\alpha} in the southwest region is significantly lower than that expected for a typical HII region. A possibility to explain the low Pa{\beta}/H{\alpha} ratio in the southwest region is the scattering of H{\alpha} and Pa{\beta} photons from the center of Cen A by dust grains in the halo clouds. From the upper limit of Pa{\beta}/H{\alpha} in the southwest region, we obtain constraints on the dust size distribution, which is found to be compatible with those seen in the interstellar medium of our Galaxy., Comment: 11 pages, 2 figures, accepted for publication in PASJ, typos corrected
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- 2020
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5. Double-pass imaging background-oriented schlieren technique for focusing on measurement target
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Hirose, Y., Yamagishi, M., Udagawa, S., Inage, T., Tagawa, Y., and Ota, M.
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- 2023
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6. Near- to mid-infrared spectroscopy of the heavily obscured AGN LEDA 1712304 with AKARI/IRC
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Tsuchikawa, T., Kaneda, H., Oyabu, S., Kokusho, T., Morihana, K., Kobayashi, H., Yamagishi, M., and Toba, Y.
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Astrophysics - Astrophysics of Galaxies - Abstract
Context. Although heavily obscured active galactic nuclei (AGNs) have been found by many observational studies, the properties of the surrounding dust are poorly understood. Using AKARI/IRC spectroscopy, we discover a new sample of a heavily obscured AGN in LEDA 1712304 which shows a deep spectral absorption feature due to silicate dust. Aims. We study the infrared (IR) spectral properties of circumnuclear silicate dust in LEDA 1712304. Methods. We perform IR spectral fitting, considering silicate dust properties such as composition, porosity, size and crystallinity. Spectral energy distribution (SED) fitting is also performed to the flux densities in the UV to sub-millimeter range to investigate the global spectral properties. Results. The best-fit model indicates 0.1 $\mu$m-sized porous amorphous olivine (${\rm Mg_{2x}Fe_{2-2x}SiO_4}$; $x=0.4$) with $4\%$ crystalline pyroxene. The optical depth is $\tau_{\rm sil}{\sim}2.3$, while the total IR luminosity and stellar mass are estimated to be $L_{\rm IR}=(5\pm1){\times}10^{10}\,L_{\odot}$ and $M_{\rm star}=(2.7\pm0.8){\times}10^{9}\,M_{\odot}$, respectively. In such low $L_{\rm IR}$ and $M_{\rm star}$ ranges, there are few galaxies which show that large ${\tau}_{\rm sil}$. Conclusions. The silicate dust in the AGN torus of LEDA 1712304 has properties notably similar to those in other AGNs as a whole, but slightly different in the wing shape of the absorption profile. The porosity of the silicate dust suggests dust coagulation or processing in the circumnuclear environments, while the crystallinity suggests that the silicate dust is relatively fresh., Comment: 9 pages, 6 figures, accepted for publication in A&A
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- 2019
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7. ALMA observations of layered structures due to CO selective dissociation in the $\rho$ Ophiuchi A plane-parallel PDR
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Yamagishi, M., Hara, C., Kawabe, R., Nakamura, F., Kamazaki, T., Takekoshi, T., Shimajiri, Y., Nomura, H., Takakuwa, S., and Di Francesco, J.
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Earth and Planetary Astrophysics - Abstract
We analyze $^{12}$CO($J$=2-1), $^{13}$CO($J$=2-1), C$^{18}$O ($J$=2-1), and 1.3 mm continuum maps of the $\rho$ Ophiuchi A photo-dissociation region (PDR) obtained with ALMA. Layered structures of the three CO isotopologues with an angular separation of 10 arcsec = 6.6$\times$10$^{-3}$ pc = 1400 au are clearly detected around the Be star, S1 (i.e., each front of emission shifts from the near to far side in order of $^{12}$CO, $^{13}$CO, and C$^{18}$O). We estimate the spatial variations of $X$($^{13}$CO)/$X$(C$^{18}$O) abundance ratios, and find that the abundance ratio is as high as 40 near the emission front, and decreases to the typical value in the solar system of 5.5 in a small angular scale of 4 arcsec = 2.6$\times$10$^{-3}$ pc = 560 au. We also find that the $I$($^{12}$CO(2-1))/$I$($^{13}$CO(2-1)) intensity ratio is very high ($>$21) in the flat-spectrum young stellar object, GY-51, located in the PDR. The enhancement of the ratios indicates that the UV radiation significantly affects the CO isotopologues via selective dissociation in the overall $\rho$ Ophiuchi A PDR, and that the $\rho$ Ophiuchi A PDR has a plane-parallel structure., Comment: 14 pages, 6 figures, ApJ accepted
- Published
- 2019
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8. Sequentially addressable dielectrophoretic array for high-throughput sorting of large-volume biological compartments.
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Isozaki, A, Nakagawa, Y, Loo, MH, Shibata, Y, Tanaka, N, Setyaningrum, DL, Park, J-W, Shirasaki, Y, Mikami, H, Huang, D, Tsoi, H, Riche, CT, Ota, T, Miwa, H, Kanda, Y, Ito, T, Yamada, K, Iwata, O, Suzuki, K, Ohnuki, S, Ohya, Y, Kato, Y, Hasunuma, T, Matsusaka, S, Yamagishi, M, Yazawa, M, Uemura, S, Nagasawa, K, Watarai, H, Di Carlo, D, and Goda, K
- Abstract
Droplet microfluidics has become a powerful tool in precision medicine, green biotechnology, and cell therapy for single-cell analysis and selection by virtue of its ability to effectively confine cells. However, there remains a fundamental trade-off between droplet volume and sorting throughput, limiting the advantages of droplet microfluidics to small droplets (
- Published
- 2020
9. Dust properties in the cold and hot gas phases of the ATLAS3D early-type galaxies as revealed by AKARI
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Kokusho, T., Kaneda, H., Bureau, M., Suzuki, T., Murata, K., Kondo, A., Yamagishi, M., Tsuchikawa, T., and Furuta, T.
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Astrophysics - Astrophysics of Galaxies - Abstract
The properties of the dust in the cold and hot gas phases of early-type galaxies (ETGs) are key to understand ETG evolution. We thus conducted a systematic study of the dust in a large sample of local ETGs, focusing on relations between the dust and the molecular, atomic, and X-ray gas of the galaxies, as well as their environment. We estimated the dust temperatures and masses of the 260 ETGs from the ATLAS3D survey, using fits to their spectral energy distributions primarily constructed from AKARI measurements. We also used literature measurements of the cold (CO and HI) and X-ray gas phases. Our ETGs show no correlation between their dust and stellar masses, suggesting inefficient dust production by stars and/or dust destruction in X-ray gas. The global dust-to-gas mass ratios of ETGs are generally lower than those of late-type galaxies, likely due to dust-poor HI envelopes in ETGs. They are also higher in Virgo Cluster ETGs than in group and field ETGs, but the same ratios measured in the central parts of the galaxies only are independent of galaxy environment. Slow-rotating ETGs have systematically lower dust masses than fast-rotating ETGs. The dust masses and X-ray luminosities are correlated in fast-rotating ETGs, whose star formation rates are also correlated with the X-ray luminosities. The correlation between dust and X-rays in fast-rotating ETGs appears to be caused by residual star formation, while slow-rotating ETGs are likely well evolved, and thus exhausting their dust. These results appear consistent with the postulated evolution of ETGs, whereby fast-rotating ETGs form by mergers of late-type galaxies and associated bulge growth, while slow-rotating ETGs form by (dry) mergers of fast-rotating ETGs. Central cold dense gas appears to be resilient against ram pressure stripping, suggesting that Virgo Cluster ETGs may not suffer strong related star formation suppression., Comment: 18 pages, 7 figures, accepted for publication in A&A
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- 2018
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10. Nobeyama 45m Cygnus-X CO survey I: photodissociation of molecules revealed by the unbiased large-scale CN and C$^{18}$O maps
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Yamagishi, M., Nishimura, A., Fujita, S., Takekoshi, T., Matsuo, M., Minamidani, T., Taniguchi, K., Tokuda, K., and Shimajiri, Y.
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Astrophysics - Astrophysics of Galaxies - Abstract
We present an unbiased large-scale (9 deg$^2$) CN ($N$=1-0) and C$^{18}$O ($J$=1-0) survey of Cygnus-X conducted with the Nobeyama 45m Cygnus-X CO survey. CN and C$^{18}$O are detected in various objects towards the Cygnus-X North and South (e.g., DR17, DR18, DR21, DR22, DR23, and W75N). We find that CN/C$^{18}$O integrated intensity ratios are systematically different from region to region, and are especially enhanced in DR17 and DR18 which are irradiated by the nearby OB stars. This result suggests that CN/C$^{18}$O ratios are enhanced via photodissociation reactions. We investigate the relation between the CN/C$^{18}$O ratio and strength of the UV radiation field. As a result, we find that CN/C$^{18}$O ratios correlate with the far-UV intensities, $G_0$. We also find that CN/C$^{18}$O ratios decrease inside molecular clouds, where the interstellar UV radiation is reduced due to the interstellar dust extinction. We conclude that the CN/C$^{18}$O ratio is controlled by the UV radiation, and is a good probe of photon-dominated regions., Comment: 16 pages, 7 figures, ApJS accepted
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- 2018
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11. Mechanisms of action and resistance in histone methylation-targeted therapy.
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Yamagishi M, Kuze Y, Kobayashi S, Nakashima M, Morishima S, Kawamata T, Makiyama J, Suzuki K, Seki M, Abe K, Imamura K, Watanabe E, Tsuchiya K, Yasumatsu I, Takayama G, Hizukuri Y, Ito K, Taira Y, Nannya Y, Tojo A, Watanabe T, Tsutsumi S, Suzuki Y, and Uchimaru K
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- Adult, Humans, Chromatin chemistry, Chromatin drug effects, Chromatin genetics, Chromatin metabolism, DNA Methylation drug effects, Drug Resistance, Neoplasm drug effects, Enhancer of Zeste Homolog 2 Protein antagonists & inhibitors, Epigenesis, Genetic drug effects, Genes, Tumor Suppressor drug effects, Homeostasis drug effects, Lysine chemistry, Lysine metabolism, Mutation, Polycomb Repressive Complex 2 genetics, Polycomb Repressive Complex 2 metabolism, Single-Cell Analysis, Histones chemistry, Histones drug effects, Histones metabolism, Leukemia-Lymphoma, Adult T-Cell drug therapy, Leukemia-Lymphoma, Adult T-Cell genetics, Leukemia-Lymphoma, Adult T-Cell metabolism, Leukemia-Lymphoma, Adult T-Cell pathology, Methylation drug effects
- Abstract
Epigenomes enable the rectification of disordered cancer gene expression, thereby providing new targets for pharmacological interventions. The clinical utility of targeting histone H3 lysine trimethylation (H3K27me3) as an epigenetic hallmark has been demonstrated
1-7 . However, in actual therapeutic settings, the mechanism by which H3K27me3-targeting therapies exert their effects and the response of tumour cells remain unclear. Here we show the potency and mechanisms of action and resistance of the EZH1-EZH2 dual inhibitor valemetostat in clinical trials of patients with adult T cell leukaemia/lymphoma. Administration of valemetostat reduced tumour size and demonstrated durable clinical response in aggressive lymphomas with multiple genetic mutations. Integrative single-cell analyses showed that valemetostat abolishes the highly condensed chromatin structure formed by the plastic H3K27me3 and neutralizes multiple gene loci, including tumour suppressor genes. Nevertheless, subsequent long-term treatment encounters the emergence of resistant clones with reconstructed aggregate chromatin that closely resemble the pre-dose state. Acquired mutations at the PRC2-compound interface result in the propagation of clones with increased H3K27me3 expression. In patients free of PRC2 mutations, TET2 mutation or elevated DNMT3A expression causes similar chromatin recondensation through de novo DNA methylation in the H3K27me3-associated regions. We identified subpopulations with distinct metabolic and gene translation characteristics implicated in primary susceptibility until the acquisition of the heritable (epi)mutations. Targeting epigenetic drivers and chromatin homeostasis may provide opportunities for further sustained epigenetic cancer therapies., (© 2024. The Author(s).)- Published
- 2024
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12. Unbiased large spectroscopic surveys of galaxies selected by SPICA using dust bands
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Kaneda, H., Ishihara, D., Oyabu, S., Yamagishi, M., Wada, T., Armus, L., Baes, M., Charmandaris, V., Czerny, B., Efstathiou, A., Fern'andez-Ontiveros, J. A., Ferrara, A., Gonz'alez-Alfonso, E., Griffin, M., Gruppioni, C., Hatziminaoglou, E., Imanishi, M., Kohno, K., Kwon, J., Nakagawa, T., Onaka, T., Pozzi, F., Scott, D., Smith, J. -D. T., Spinoglio, L., Suzuki, T., van der Tak, F., Vaccari, M., Vignali, C., and Wang, L.
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Astrophysics - Astrophysics of Galaxies - Abstract
The mid-infrared (IR) range contains many spectral features associated with large molecules and dust grains such as polycyclic aromatic hydrocarbons (PAHs) and silicates. These are usually very strong compared to fine-structure gas lines, and thus valuable in studying the spectral properties of faint distant galaxies. In this paper, we evaluate the capability of low-resolution mid-IR spectroscopic surveys of galaxies that could be performed by SPICA. The surveys are designed to address the question how star formation and black hole accretion activities evolved over cosmic time through spectral diagnostics of the physical conditions of the interstellar/circumnuclear media in galaxies. On the basis of results obtained with Herschel far-IR photometric surveys of distant galaxies and Spitzer and AKARI near- to mid-IR spectroscopic observations of nearby galaxies, we estimate the numbers of the galaxies at redshift z > 0.5, which are expected to be detected in the PAH features or dust continuum by a wide (10 deg^2) or deep (1 deg^2) blind survey, both for a given observation time of 600 hours. As by-products of the wide blind survey, we also expect to detect debris disks, through the mid-IR excess above the photospheric emission of nearby main-sequence stars, and we estimate their number. We demonstrate that the SPICA mid-IR surveys will efficiently provide us with unprecedentedly large spectral samples, which can be studied further in the far-IR with SPICA., Comment: Paper accepted for publication on PASA on 18th October 2017, as part of the SPICA Special Issue
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- 2017
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13. Spatial variations of PAH properties in M17SW revealed by Spitzer/IRS spectral mapping
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Yamagishi, M., Kaneda, H., Ishihara, D., Oyabu, S., Suzuki, T., Onaka, T., Nagayama, T., Umemoto, T., Minamidani, T., Nishimura, A., Matsuo, M., Fujita, S., Tsuda, Y., Kohno, M., and Ohashi, S.
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Astrophysics - Astrophysics of Galaxies - Abstract
We present $Spitzer$/IRS mid-infrared spectral maps of the Galactic star-forming region M17 as well as IRSF/SIRIUS Br$\gamma$ and Nobeyama 45-m/FOREST $^{13}$CO ($J$=1--0) maps. The spectra show prominent features due to polycyclic aromatic hydrocarbons (PAHs) at wavelengths of 6.2, 7.7, 8.6, 11.3, 12.0, 12.7, 13.5, and 14.2 $\mu$m. We find that the PAH emission features are bright in the region between the HII region traced by Br$\gamma$ and the molecular cloud traced by $^{13}$CO, supporting that the PAH emission originates mostly from photo-dissociation regions. Based on the spatially-resolved $Spitzer$/IRS maps, we examine spatial variations of the PAH properties in detail. As a result, we find that the interband ratio of PAH 7.7 $\mu$m/PAH 11.3 $\mu$m varies locally near M17SW, but rather independently of the distance from the OB stars in M17, suggesting that the degree of PAH ionization is mainly controlled by local conditions rather than the global UV environments determined by the OB stars in M17. We also find that the interband ratios of the PAH 12.0 $\mu$m, 12.7 $\mu$m, 13.5 $\mu$m, and 14.2 $\mu$m features to the PAH 11.3 $\mu$m feature are high near the M17 center, which suggests structural changes of PAHs through processing due to intense UV radiation, producing abundant edgy irregular PAHs near the M17 center., Comment: 22 pages, 12 figures, ApJ accepted
- Published
- 2016
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14. V5852 Sgr: An Unusual Nova Possibly Associated with the Sagittarius Stream
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Aydi, E., Mróz, P., Whitelock, P. A., Mohamed, S., Wyrzykowski, Ł., Udalski, A., Vaisanen, P., Nagayama, T., Dominik, M., Scholz, A., Onozato, H., Williams, R. E., Hodgkin, S. T., Nishiyama, S., Yamagishi, M., Smith, A. M. S., Ryu, T., Iwamatsu, A., and Kawamata, I.
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Astrophysics - Solar and Stellar Astrophysics - Abstract
We report spectroscopic and photometric follow-up of the peculiar nova V5852~Sgr (discovered as OGLE-2015-NOVA-01), which exhibits a combination of features from different nova classes. The photometry shows a flat-topped light curve with quasi-periodic oscillations, then a smooth decline followed by two fainter recoveries in brightness. Spectroscopy with the Southern African Large Telescope shows first a classical nova with an Fe II or Fe IIb spectral type. In the later spectrum, broad emissions from helium, nitrogen and oxygen are prominent and the iron has faded which could be an indication to the start of the nebular phase. The line widths suggest ejection velocities around $1000\,{\rm km\,s^{-1}}$. The nova is in the direction of the Galactic bulge and is heavily reddened by an uncertain amount. The $V$ magnitude 16 days after maximum enables a distance to be estimated and this suggests that the nova may be in the extreme trailing stream of the Sagittarius dwarf spheroidal galaxy. If so it is the first nova to be detected from that, or from any dwarf spheroidal galaxy. Given the uncertainty of the method and the unusual light curve we cannot rule out the possibility that it is in the bulge or even the Galactic disk behind the bulge., Comment: Accepted for publication in MNRAS on June 8th, 2016 (11 pages, 8 figures, 5 tables)
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- 2016
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15. Amazonins: New Peptaibol Sequences from an Endophytic Strain of Trichoderma amazonicum.
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Dos Santos Castro G, Fernandes Sousa T, Jarline Santos da Silva I, Sena Raposo D, Carlos Ipuchima da Silva J, Peñaloza E, Garrett R, Eduardo Beleza Yamagishi M, Ferreira da Silva G, and Henrique Ferreira Koolen H
- Abstract
Three new putative sequences of 14-residue peptaibols, named amazonins I-III were characterized from the endophytic fungus Trichoderma amazonicum via genome mining, high-performance liquid chromatography coupled to high-resolution tandem mass spectrometry (LC-MS/MS), and molecular networking. Bioinformatic analysis of the T. amazonicum genome assembly revealed 63 clusters of biosynthetic genes (BGCs) related to secondary metabolites, including a nonribosomal peptide synthetase accountable for the biosynthesis of the discovered peptide sequences. Analysis of the adenylation domains, along with manual interpretation of MS/MS spectra, allowed extensive annotation of the new peptaibol sequences. The combination of bioinformatic tools and LC-MS/MS provides a better opportunity to characterize and identify new peptaibol sequences. Thus, the importance of studies on the production and characterization of peptaibols produced by Trichoderma species from the Amazon region is highlighted., (© 2024 Wiley-VHCA AG, Zurich, Switzerland.)
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- 2024
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16. Overexpression of lily MicroRNA156-resistant SPL13A stimulates stem elongation and flowering in Lilium formosanum under non-inductive (non-chilling) conditions.
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Yamagishi M, Nomizu T, and Nakatsuka T
- Abstract
Flowering plants undergo juvenile vegetative, adult vegetative, and reproductive phases. Lily plants ( Lilium spp.) develop scaly leaves during their juvenile vegetative phase. Stem elongation occurs in the adult vegetative phase and is followed by floral transition. As the duration of the juvenile vegetative phase is long in lilies, the microRNA156 (miR156) and SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE (SPL) modules are expected to play a major role in vegetative phase change and flower induction. In the present study, we aimed to explore the functions of lily SLP13A. We evaluated phenotypic changes and gene expression in L. formosanum plants overexpressing miR156-resistant SPL13A ( rSPL13A ) and examined the accumulation levels of gene transcripts and mature miRNAs in non-transformed L. longiflorum plants. Lily plants overexpressing rSPL13A exhibited stem elongation under non-inductive conditions, and FLOWERING LOCUS T ( FT ) genes were poorly involved in this stem elongation. Flowering was induced in the transformed plants with elongated stems, and the accumulation of MADS5 (APETALA1) transcripts and mature miR172 was elevated in these plants. In non-transformed lilies, SPL13A transcripts were highly accumulated in the shoot apices of both juvenile and adult plants. As mature miR156 was poorly accumulated in the shoot apices of the adult plants, SPL13A was active enough to stimulate stem elongation and flower induction. In contrast, mature miR156 was reliably detected in shoot apices of the juvenile plants. Because our transient assay using tobacco plants expressing a SPL13A-GFP fusion protein indicated that miR156 repressed SPL13A expression mainly at the translational level, SPL13A activity should be insufficient to stimulate stem elongation in the juvenile plants. In addition, the accumulation of MADS5 transcripts and mature miR172 in the shoot apices increased with plant growth and peaked before the transition to the reproductive phase. Therefore, we conclude that SPL13A regulates stem elongation in the adult vegetative phase, which differs from the mechanisms evaluated in Arabidopsis and rice, wherein stem elongation proceeds in a reproductive phase and FT genes are heavily involved in it, and that SPL13A induces flowering by the activation of genes related to the age pathway underlying floral transition, as APETALA1 and primary-MIR172 are mainly involved in this pathway., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Yamagishi, Nomizu and Nakatsuka.)
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- 2024
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17. Platelet and white blood cell counts correlate with leptin and body mass index in Japanese adolescents.
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Takaya J, Tanabe Y, Nomura N, Minami M, Onuma C, Yamagishi M, and Kaneko K
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Obesity is associated with mild chronic inflammation, frequently observed along with increased platelet and white blood cell (WBC) levels in adults. We aimed to clarify the relationship between peripheral blood cell count, body mass index standard deviation score (BMI-SDS), and adipocytokine levels in obese adolescents. Participants included 31 patients with obesity (age: 13.1 ± 3.1 yr) and 28 normal-weight controls (age: 13.3 ± 1.9 yr). Obesity was defined as a percentage of overweight ≥ 20%; patients with type 2 diabetes were excluded. As sex differences were observed in blood cell counts, the analysis was performed after adjusting for sex differences. The obese group has significantly higher WBC, red blood cell, and platelet counts, as well as high serum leptin levels and Homeostasis Model Assessment of insulin resistance (HOMA-IR) scores compared with those of the control group. In all participants, BMI-SDS significantly correlated with WBC and platelet counts. Platelet count correlated with serum leptin and glucose levels, whereas WBC count correlated with serum leptin, insulin, HOMA-IR, and glucose levels. Statistical analysis showed that serum leptin level significantly influenced the platelet count and HOMA-IR score affected WBC count. Increased platelet and WBC counts in adolescents with obesity may increase the risk of thrombosis., Competing Interests: None of the authors has any potential conflicts of interest associated with this research., (2024©The Japanese Society for Pediatric Endocrinology.)
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- 2024
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18. Thiophene-fused fulminenes (FuDTs): promising platforms for high-mobility organic semiconductors with a zigzag shape.
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Kumagai S, Ishida T, Kakiuchi S, Yamagishi M, Sato H, Ishii H, Nishihara Y, and Okamoto T
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Zigzag-shaped [6]phenacene isomers with fused thiophene rings, fulmineno[2,1- b :10,9- b ']dithiophene (FuDT-α) and fulmineno[1,2- b :9,10- b ']dithiophene (FuDT-β), were syntheized and their p-type organic semicondutor properties were studied. Small effective masses of holes were estimated from the crystal structures of both isomers, which was particularly demonstrated by the hole mobility of 10.5 cm
2 V-1 s-1 for FuDT-α single crystals.- Published
- 2024
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19. Two Tetrahymena kinesin-9 family members exhibit slow plus-end-directed motility in vitro.
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Ishii H, Yamagishi M, and Yajima J
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- Protozoan Proteins metabolism, Protozoan Proteins genetics, Adenosine Triphosphate metabolism, Cilia metabolism, Tetrahymena metabolism, Tetrahymena genetics, Kinesins metabolism, Kinesins genetics, Microtubules metabolism, Tetrahymena thermophila metabolism, Tetrahymena thermophila genetics
- Abstract
The kinesin-9 family comprises two subfamilies specific to ciliated eukaryotic cells, and has recently attracted considerable attention because of its importance in ciliary bending and formation. However, only scattered data are available on the motor properties of kinesin-9 family members; these properties have not been compared under identical experimental conditions using kinesin-9 motors from the same species. Here, we report the comprehensive motor properties of two kinesin-9 molecules of Tetrahymena thermophila, TtK9A (Kif9/Klp1 ortholog) and TtK9B1 (Kif6 ortholog), using microtubule-based in vitro assays, including single-motor and multi-motor assays and microtubule-stimulated ATPase assays. Both subfamilies exhibit microtubule plus-end-directed, extremely slow motor activity, both in single and multiple molecules. TtK9A shows lower processivity than TtK9B1. Our findings indicate that the considerable slow movement of kinesin-9 that corresponds to low ATP hydrolysis rates is a common feature of the ciliary kinesin-9 family., (© 2024. The Author(s).)
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- 2024
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20. Automated Mass Production System for Fruit Flies Based on the Melon Fly, Dacus cucurbitae Coquillett (Diptera: Tephritidae)
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Nakamori, H., primary, Kakinohana, H., additional, and Yamagishi, M., additional
- Published
- 2021
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21. Large-scale mapping of the massive star-forming region RCW38 in the [CII] and PAH emission
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Kaneda, H., Nakagawa, T., Ghosh, S. K., Ojha, D. K., Ishihara, D., Kondo, T., Ninan, J. P., Tanabe, M., Fukui, Y., Hattori, Y., Onaka, T., Torii, K., and Yamagishi, M.
- Subjects
Astrophysics - Astrophysics of Galaxies - Abstract
We investigate the large-scale structure of the interstellar medium (ISM) around the massive star cluster RCW38 in the [CII] 158 um line and polycyclic aromatic hydrocarbon (PAH) emission. We carried out [CII] line mapping of an area of ~30'x15' for RCW~38 by a Fabry-Perot spectrometer on a 100 cm balloon-borne telescope with an angular resolution of ~1'.5. We compared the [CII] intensity map with the PAH and dust emission maps obtained by the AKARI satellite. The [CII] emission shows a highly nonuniform distribution around the cluster, exhibiting the structure widely extended to the north and the east from the center. The [CII] intensity rapidly drops toward the southwest direction, where a CO cloud appears to dominate. We decompose the 3-160 um spectral energy distributions of the surrounding ISM structure into PAH as well as warm and cool dust components with the help of 2.5-5 um spectra. We find that the [CII] emission spatially corresponds to the PAH emission better than to the dust emission, confirming the relative importance of PAHs for photo-electric heating of gas in photo-dissociation regions. A naive interpretation based on our observational results indicates that molecular clouds associated with RCW38 are located both on the side of and behind the cluster., Comment: 10 pages, 7 figures, accepted for publication in A&A
- Published
- 2013
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22. AKARI near-infrared spectroscopy of the aromatic and aliphatic hydrocarbon emission features in the galactic superwind of M 82
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Yamagishi, M., Kaneda, H., Ishihara, D., Kondo, T., Onaka, T., Suzuki, T., and Minh, Y. C.
- Subjects
Astrophysics - Astrophysics of Galaxies - Abstract
Aims. We investigate the properties of hydrocarbon grains in the galactic superwind of M 82. Methods. With AKARI, we performed near-infrared (2.5 - 4.5 um) spectroscopic observations of 34 regions in M 82 including its northern and southern halos. Results. Many of the spectra show strong emission at 3.3 um due to polycyclic aromatic hydrocarbons (PAHs) and relatively weak features at 3.4 - 3.6 um due to aliphatic hydrocarbons. In particular, we clearly detect the PAH 3.3 um emission and the 3.4 - 3.6 um features in halo regions, which are located at a distance of 2 kpc away from the galactic center. We find that the ratios of the 3.4 - 3.6 um features to the 3.3 um feature intensity significantly increase with distance from the galactic center, while the ratios of the 3.3 um feature to the AKARI 7 um band intensity do not. Conclusions. Our results clearly confirm the presence of small PAHs even in a harsh environment of the halo of M 82. The results also reveal that the aliphatic hydrocarbons emitting the 3.4 - 3.6 um features are unusually abundant in the halo, suggesting that small carbonaceous grains are produced by shattering of larger grains in the galactic superwind., Comment: 5 pages, 3 figures, 1 table, accepted for publication in A&A
- Published
- 2012
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23. Effects of Longitudinal Changes in Anemia Status on Clinical Outcomes in Patients With Non-Valvular Atrial Fibrillation - Analysis From the Hokuriku-Plus AF Registry.
- Author
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Tsuda T, Hayashi K, Kato T, Kusayama T, Nakagawa Y, Nomura A, Tada H, Usui S, Sakata K, Kawashiri MA, Fujino N, Yamagishi M, and Takamura M
- Abstract
Background: Anemia, a common comorbidity in older patients with heart failure (HF) and atrial fibrillation (AF), is associated with an increased risk of adverse events. This study evaluated the prognostic effects of longitudinal changes in anemia status on clinical outcomes in patients with AF., Methods and Results: We prospectively evaluated data of 1,388 patients with AF from the Hokuriku-Plus AF Registry (1,010 men; mean [±SD] age 72.3±9.7 years) and recorded the incidence of death, HF, thromboembolism, and major bleeding. Of these patients, the 1,233 for whom hemoglobin levels were available at baseline and at the 1-year follow-up were further evaluated. Patients were categorized into 3 groups based on longitudinal changes in 1-year anemia status: Group 1, AF without anemia; Group 2, AF with improved anemia; and Group 3, AF with sustained or new-onset anemia. Over the 1-5 years of follow up, the incidences of death, HF, thromboembolism, and major bleeding were significantly higher among patients with than without anemia. In addition, the incidence of death or HF was significantly higher in Group 3 than in Groups 1 and 2. Multivariate analysis revealed no anemia or improvement in anemia in 1 year as an independent predictor for a favorable prognosis for cardiovascular death and HF., Conclusions: Recovery from anemia may be associated with a favorable clinical course of AF.
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- 2024
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24. Targeting Pancreatic Cancer with Novel Nicolaioidesin C Derivatives: Molecular Mechanism, In Vitro , and In Vivo Evaluations.
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Yamazaki T, Phan ND, Maneenet J, Yamagishi M, Nishikawa Y, Okada T, Okumura T, Toyooka N, Fujii T, and Awale S
- Subjects
- Animals, Humans, Mice, Antineoplastic Agents pharmacology, Antineoplastic Agents chemistry, Antineoplastic Agents chemical synthesis, Antineoplastic Agents therapeutic use, Cell Line, Tumor, Cell Movement drug effects, Cell Proliferation drug effects, Drug Screening Assays, Antitumor, Mice, Inbred BALB C, Mice, Nude, Phosphatidylinositol 3-Kinases metabolism, Proto-Oncogene Proteins c-akt metabolism, Signal Transduction drug effects, Structure-Activity Relationship, TOR Serine-Threonine Kinases metabolism, TOR Serine-Threonine Kinases antagonists & inhibitors, Xenograft Model Antitumor Assays, Deoxycytidine analogs & derivatives, Deoxycytidine pharmacology, Deoxycytidine therapeutic use, Gemcitabine, Pancreatic Neoplasms drug therapy, Pancreatic Neoplasms pathology, Pancreatic Neoplasms metabolism
- Abstract
Pancreatic cancer, one of the deadliest cancers with the lowest 5-year survival rate, often develops resistance to gemcitabine-based chemotherapies. The hypovascular nature of pancreatic tumors forces cancer cells to adapt to nutrient-depleted tumor microenvironments. Conventional anticancer agents targeting rapidly dividing cancer cells under nutrient-rich conditions are largely ineffective against adapted pancreatic cancer cells. Thus, targeting cancer cells under nutrient starvation, termed the "antiausterity strategy", may be effective for pancreatic cancer. This study examined nicolaioidesin C (Nic-C) derivatives as antiausterity agents. Among the 32 derivatives, Nic-15 ( 4n ) exhibited superior cytotoxicity against MIA PaCa-2 and PANC-1 pancreatic cancer cells, inhibited MIA PaCa-2 cell migration and colony formation, and modulated the PI3K/Akt/mTOR pathway, while reducing the ER stress markers induced by gemcitabine. Nic-15 was found to inhibit tumor growth and enhance the efficacy of gemcitabine in an in vivo xenograft model. Nic-15 in combination with gemcitabine may be an effective strategy for the treatment of pancreatic cancer.
- Published
- 2024
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25. Myosin-induced F-actin fragmentation facilitates contraction of actin networks.
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Matsuda K, Jung W, Sato Y, Kobayashi T, Yamagishi M, Kim T, and Yajima J
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- Animals, Actins metabolism, Actin Cytoskeleton metabolism, Myosins metabolism
- Abstract
Mechanical forces play a crucial role in diverse physiological processes, such as cell migration, cytokinesis, and morphogenesis. The actin cytoskeleton generates a large fraction of the mechanical forces via molecular interactions between actin filaments (F-actins) and myosin motors. Recent studies have shown that the common tendency of actomyosin networks to contract into a smaller structure deeply involves F-actin buckling induced by motor activities, fragmentation of F-actins, and the force-dependent unbinding of cross-linkers that inter-connect F-actins. The fragmentation of F-actins was shown to originate from either buckling or tensile force from previous single-molecule experiments. While the role of buckling in network contraction has been studied extensively, to date, the role of tension-induced F-actin fragmentation in network contraction has not been investigated. In this study, we employed in vitro experiments and an agent-based computational model to illuminate when and how the tension-induced F-actin fragmentation facilitates network contraction. Our experiments demonstrated that F-actins can be fragmented due to tensile forces, immediately followed by catastrophic rupture and contraction of networks. Using the agent-based model, we showed that F-actin fragmentation by tension results in distinct rupture dynamics different from that observed in networks only with cross-linker unbinding. Moreover, we found that tension-induced F-actin fragmentation is particularly important for the contraction of networks with high connectivity. Results from our study shed light on an important regulator of the contraction of actomyosin networks which has been neglected. In addition, our results provide insights into the rupture mechanisms of polymeric network structures and bio-inspired materials., (© 2024 The Authors. Cytoskeleton published by Wiley Periodicals LLC.)
- Published
- 2024
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26. Abnormal resting-state hyperconnectivity in schizophrenia: A whole-head near-infrared spectroscopy study.
- Author
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Sakakibara E, Satomura Y, Matsuoka J, Koike S, Okada N, Sakurada H, Yamagishi M, Kawakami N, and Kasai K
- Subjects
- Humans, Male, Female, Adult, Brain Mapping, Young Adult, Middle Aged, Neural Pathways physiopathology, Neural Pathways diagnostic imaging, Schizophrenia physiopathology, Schizophrenia diagnostic imaging, Schizophrenia metabolism, Schizophrenia drug therapy, Spectroscopy, Near-Infrared, Rest
- Abstract
Near-infrared spectroscopy (NIRS) is a noninvasive functional neuroimaging modality that can detect changes in blood oxygenation levels by tracking cortical neural activity. We recorded the resting-state brain activity of 24 individuals with schizophrenia and 90 healthy controls for 8 min using a whole-head NIRS arrangement and then used partial correlation analysis to estimate the resting-state functional connectivity (RSFC) between 17 cortical regions. We found that the RSFC between the bilateral orbitofrontal cortices (OFCs) and between the right temporal and parietal lobes was significantly higher in patients with schizophrenia than in healthy controls. The RSFC between the bilateral OFCs was positively correlated with negative symptom severity, whereas the RSFC between the right temporal and parietal lobes was positively correlated with the chlorpromazine equivalent for antipsychotics prescribed to patients with schizophrenia. This finding was consistent with that for the RSFC calculated using the anterior 52-channel signals. Our results suggest that NIRS-based RSFC measurements have potential clinical applications., Competing Interests: Declaration of competing interest The authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2024
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27. Tether-scanning the kinesin motor domain reveals a core mechanical action.
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Sumiyoshi R, Yamagishi M, Furuta A, Nishizaka T, Furuta K, Cross RA, and Yajima J
- Subjects
- Animals, DNA metabolism, DNA chemistry, Kinesins metabolism, Kinesins chemistry, Microtubules metabolism, Protein Domains
- Abstract
Natural kinesin motors are tethered to their cargoes via short C-terminal or N-terminal linkers, whose docking against the core motor domain generates directional force. It remains unclear whether linker docking is the only process contributing directional force or whether linker docking is coupled to and amplifies an underlying, more fundamental force-generating mechanical cycle of the kinesin motor domain. Here, we show that kinesin motor domains tethered via double-stranded DNAs (dsDNAs) attached to surface loops drive robust microtubule (MT) gliding. Tethering using dsDNA attached to surface loops disconnects the C-terminal neck-linker and the N-terminal cover strand so that their dock-undock cycle cannot exert force. The most effective attachment positions for the dsDNA tether are loop 2 or loop 10, which lie closest to the MT plus and minus ends, respectively. In three cases, we observed minus-end-directed motility. Our findings demonstrate an underlying, potentially ancient, force-generating core mechanical action of the kinesin motor domain, which drives, and is amplified by, linker docking., Competing Interests: Competing interests statement:The authors declare no competing interest.
- Published
- 2024
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28. Optimization of α-amido boronic acids via cryo-electron microscopy analysis: Discovery of a novel highly selective immunoproteasome subunit LMP7 (β5i)/LMP2 (β1i) dual inhibitor.
- Author
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Arai Y, Shitama H, Yamagishi M, Ono S, Kashima A, Hiraizumi M, Tsuda N, Katayama K, Tanaka K, Koda Y, Kato S, Sakata K, Nureki O, and Miyazaki H
- Subjects
- Animals, Mice, Humans, Structure-Activity Relationship, Cysteine Endopeptidases metabolism, Molecular Structure, Molecular Dynamics Simulation, Drug Discovery, Proteasome Endopeptidase Complex metabolism, Proteasome Endopeptidase Complex chemistry, Cryoelectron Microscopy, Proteasome Inhibitors pharmacology, Proteasome Inhibitors chemistry, Proteasome Inhibitors chemical synthesis, Boronic Acids chemistry, Boronic Acids pharmacology, Boronic Acids chemical synthesis
- Abstract
The immunoproteasome subunit LMP7 (β5i)/LMP2 (β1i) dual blockade has been reported to suppress B cell differentiation and activation, suggesting that the dual inhibition of LMP7/LMP2 is a promising approach for treating autoimmune diseases. In contrast, the inhibition of the constitutive proteasome subunit β5c correlates with cytotoxicity against non-immune cells. Therefore, LMP7/LMP2 dual inhibitors with high selectivity over β5c may be desirable for treating autoimmune diseases. In this study, we present the optimization and discovery of α-amido boronic acids using cryo-electron microscopy (cryo-EM). The exploitation of structural differences between the proteasome subunits led to the identification of a highly selective LMP7/LMP2 dual inhibitor 19. Molecular dynamics simulation based on cryo-EM structures of the proteasome subunits complexed with 19 explained the inhibitory activity profile. In mice immunized with 4-hydroxy-3-nitrophenylacetyl conjugated to ovalbumin, results indicate that 19 is orally bioavailable and shows promise as potential treatment for autoimmune diseases., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)
- Published
- 2024
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29. Frontal pole-precuneus connectivity is associated with a discrepancy between self-rated and observer-rated depression severity in mood disorders: a resting-state functional magnetic resonance imaging study.
- Author
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Kawakami S, Okada N, Satomura Y, Shoji E, Mori S, Kiyota M, Omileke F, Hamamoto Y, Morita S, Koshiyama D, Yamagishi M, Sakakibara E, Koike S, and Kasai K
- Subjects
- Humans, Female, Male, Adult, Middle Aged, Young Adult, Mood Disorders diagnostic imaging, Mood Disorders physiopathology, Mood Disorders psychology, Self Report, Neural Pathways physiopathology, Neural Pathways diagnostic imaging, Rest, Nerve Net diagnostic imaging, Nerve Net physiopathology, Severity of Illness Index, Brain Mapping methods, Magnetic Resonance Imaging methods, Parietal Lobe diagnostic imaging, Parietal Lobe physiopathology, Frontal Lobe diagnostic imaging, Frontal Lobe physiopathology, Depression diagnostic imaging, Depression physiopathology, Depression psychology
- Abstract
Discrepancies in self-rated and observer-rated depression severity may underlie the basis for biological heterogeneity in depressive disorders and be an important predictor of outcomes and indicators to optimize intervention strategies. However, the neural mechanisms underlying this discrepancy have been understudied. This study aimed to examine the brain networks that represent the neural basis of the discrepancy between self-rated and observer-rated depression severity using resting-state functional MRI. To examine the discrepancy between self-rated and observer-rated depression severity, self- and observer-ratings discrepancy (SOD) was defined, and the higher and lower SOD groups were selected from depressed patients as participants showing extreme deviation. Resting-state functional MRI analysis was performed to examine regions with significant differences in functional connectivity in the two groups. The results showed that, in the higher SOD group compared to the lower SOD group, there was increased functional connectivity between the frontal pole and precuneus, both of which are subregions of the default mode network that have been reported to be associated with ruminative and self-referential thinking. These results provide insight into the association of brain circuitry with discrepancies between self- and observer-rated depression severity and may lead to more treatment-oriented diagnostic reclassification in the future., (© The Author(s) 2024. Published by Oxford University Press.)
- Published
- 2024
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30. Development of a novel rodent model for dog heartworm microfilaremia using the severe-combined immunodeficiency mouse.
- Author
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Mizuseki M, Ikeda N, Shirozu T, Yamagishi M, Oshiro S, and Fukumoto S
- Subjects
- Animals, Dogs, Mice, Dog Diseases parasitology, Aedes parasitology, Larva, Ivermectin therapeutic use, Dirofilariasis parasitology, Mice, SCID, Dirofilaria immitis, Disease Models, Animal, Microfilariae
- Abstract
Dirofilaria immitis is a mosquito-borne parasitic nematode that causes fatal heartworm disease in canids. The microfilariae are essential for research, including drug screening and mosquito-parasite interactions. However, no reliable methods for maintaining microfilaria long-term are currently available. Therefore, we used severe combined immunodeficiency (SCID) mice to develop a reliable method for maintaining D. immitis microfilaria. SCID mice were injected intravenously with microfilariae isolated from a D. immitis-infected dog. Microfilariae were detected in blood collected from the tail vein 218 days post-inoculation (dpi) and via cardiac puncture 296 dpi. Microfilariae maintained in and extracted from SCID mice showed infectivity and matured into third-stage larvae (L3s) in the vector mosquito Aedes aegypti. L3s can develop into the fourth stage larvae in vitro. Microfilariae from SCID mice respond normally to ivermectin in vitro. The microfilariae in SCID mice displayed periodicity in the peripheral circulation. The SCID mouse model aided in the separation of microfilariae from cryopreserved specimens. The use of SCID mice enabled the isolation and sustained cultivation of microfilariae from clinical samples. These findings highlight the usefulness of the SCID mouse model for studying D. immitis microfilaremia in canine heartworm research., (© 2024. The Author(s).)
- Published
- 2024
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- View/download PDF
31. Large-scale distributions of mid- and far-infrared emission from the center to the halo of M82 revealed with AKARI
- Author
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Kaneda, H., Ishihara, D., Suzuki, T., Ikeda, N., Onaka, T., Yamagishi, M., Ohyama, Y., Wada, T., and Yasuda, A.
- Subjects
Astrophysics - Astrophysics of Galaxies - Abstract
The edge-on starburst galaxy M82 exhibits complicated distributions of gaseous materials in its halo, which include ionized superwinds driven by nuclear starbursts, neutral materials entrained by the superwinds, and large-scale neutral streamers probably caused by a past tidal interaction with M81. We investigate detailed distributions of dust grains and polycyclic aromatic hydrocarbons (PAHs) around M82 to understand their interplay with the gaseous components. We performed mid- (MIR) and far-infrared (FIR) observations of M82 with the Infrared Camera and Far-Infrared Surveyor on board AKARI. We obtain new MIR and FIR images of M82, which reveal both faint extended emission in the halo and very bright emission in the center with signal dynamic ranges as large as five and three orders of magnitude for the MIR and FIR, respectively. We detect MIR and FIR emission in the regions far away from the disk of the galaxy, reflecting the presence of dust and PAHs in the halo of M82. We find that the dust and PAHs are contained in both ionized and neutral gas components, implying that they have been expelled into the halo of M82 by both starbursts and galaxy interaction. In particular, we obtain a tight correlation between the PAH and H$\alpha$ emission, which provides evidence that the PAHs are well mixed in the ionized superwind gas and outflowing from the disk., Comment: 12 pages, 8 figures, accepted for publication in A&A
- Published
- 2010
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32. AKARI Detection of Far-Infrared Dust Emission in the Halo of NGC253
- Author
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Kaneda, H., Yamagishi, M., Suzuki, T., and Onaka, T.
- Subjects
Astrophysics - Galaxy Astrophysics - Abstract
We present new far-infrared (FIR) images of the edge-on starburst galaxy NGC253 obtained with the Far-Infrared Surveyor (FIS) onboard AKARI at wavelengths of 90 um and 140 um. We have clearly detected FIR dust emission extended in the halo of the galaxy; there are two filamentary emission structures extending from the galactic disk up to 9 kpc in the northern and 6 kpc in the northwestern direction. From its spatial coincidence with the X-ray plasma outflow, the extended FIR emission is very likely to represent outflowing dust entrained by superwinds. The ratios of surface brightness at 90 um to that at 140 um suggest that the temperatures of the dust in the halo are getting higher in the regions far from the disk, implying that there exist extra dust heating sources in the halo of the galaxy., Comment: 4 pages, 3 figures, accepted for publication in the ApJL
- Published
- 2009
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33. PAH Evolution in the Harsh Environment of the ISM
- Author
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Kaneda, H., primary, Onaka, T., additional, Sakon, I., additional, Ishihara, D., additional, Mouri, A., additional, Yamagishi, M., additional, and Yasuda, A., additional
- Published
- 2020
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- View/download PDF
34. The Successful Eradication Programs of the Melon Fly in Okinawa
- Author
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Kuba, H., primary, Kohama, T., additional, Kakinohana, H., additional, Yamagishi, M., additional, Kinjo, K., additional, Sokei, Y., additional, Nakasone, T., additional, and Nakamoto, Y., additional
- Published
- 2020
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- View/download PDF
35. Characterization of baseline clinical factors associated with incident worsening kidney function in patients with non-valvular atrial fibrillation: the Hokuriku-Plus AF Registry.
- Author
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Hayashi K, Tanaka Y, Tsuda T, Nomura A, Fujino N, Furusho H, Sakai N, Iwata Y, Usui S, Sakata K, Kato T, Tada H, Kusayama T, Usuda K, Kawashiri MA, Passman RS, Wada T, Yamagishi M, and Takamura M
- Subjects
- Male, Humans, Aged, Warfarin, Risk Factors, Kidney, Registries, Atrial Fibrillation diagnosis, Atrial Fibrillation epidemiology, Atrial Fibrillation complications, Heart Failure
- Abstract
Evidence suggests that atrial fibrillation (AF) could increase the risk of worsening kidney function (WKF) which is linked to an increased risk of stroke, bleeding, and death in AF patients. However, limited data exist regarding the factors that could lead to WKF in these patients. Therefore, we sought to identify the potential factors associated with the development of WKF in patients with non-valvular AF (NVAF). We analyzed prospectively recruited 1122 NVAF patients [men 71.9%, median age 73.0 years (interquartile range: 66.0-79.0)] with a baseline estimated glomerular filtration rate (eGFR) ≥ 15 mL/min/1.73 m
2 from the Hokuriku-Plus AF Registry. The primary outcome was incident WKF, defined as the %eGFR change from the baseline ≥ 30% during the follow-up period. We evaluated the association between baseline variables and incident WKF using univariate and multivariate Cox proportional hazard models. We also evaluated the non-linear association between the identified factors and incident WKF. During a median follow-up period of 3.0 years (interquartile range: 2.7-3.3), incident WKF was observed in 108 patients (32.6 per 1000 person-years). Compared to the patients without incident WKF, the patients with incident WKF were older and had a higher prevalence of heart failure (HF), diabetes mellitus (DM), and vascular disease at baseline. Those who experienced incident WKF also had higher diastolic blood pressure, lower hemoglobin, lower eGFR, higher B-type natriuretic peptide (BNP) and used warfarin more frequently. Upon multivariate analysis, age ≥ 75 years, HF, DM, and anemia were independently associated with incident WKF. Additionally, age and hemoglobin were linearly associated with the risk of incident WKF, whereas a J- or U-shaped association was observed for HbA1c and BNP. Age ≥ 75 years, HF, DM, and anemia were associated with the development of WKF in Japanese patients with NVAF. In patients with these risk factors, a careful monitoring of the kidney function and appropriate interventions may be important when possible., (© 2022. Springer Japan KK, part of Springer Nature.)- Published
- 2023
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36. Evidence for a gamma-ray molecular target in the enigmatic PeVatron candidate LHAASO J2108+5157
- Author
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de la Fuente, E., primary, Toledano-Juárez, I., additional, Kawata, K., additional, Trinidad, M. A., additional, Yamagishi, M., additional, Takekawa, S., additional, Tafoya, D., additional, Ohnishi, M., additional, Nishimura, A., additional, Kato, S., additional, Sako, T., additional, Takita, M., additional, Sano, H., additional, and Yadav, R. K., additional
- Published
- 2023
- Full Text
- View/download PDF
37. Development and preliminary validation of a prediction formula of sodium and sodium-to-potassium ratio based on multiple regression using 24-h urines.
- Author
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Yamagishi M, Takachi R, Ishihara J, Maruya S, Ishii Y, Kito K, Nakamura K, Tanaka J, Yamaji T, Iso H, Iwasaki M, Tsugane S, and Sawada N
- Subjects
- Humans, Female, Male, Middle Aged, Aged, Adult, Aged, 80 and over, Sodium, Dietary urine, Sodium, Dietary analysis, Feeding Behavior, Surveys and Questionnaires, Sodium urine, Potassium urine
- Abstract
Accurate measurement of sodium intake in the diet is challenging, and epidemiological studies can be hampered by the attenuation of associations due to measurement error in sodium intake. A prediction formula for habitual 24-h urine sodium excretion and sodium-to-potassium ratio might lead to more reliable conclusions. Five 24-h urinary samples and two Food Frequency Questionnaires (FFQs) were conducted among 244 Japanese participants aged 35-80 years. We conducted multivariate linear regression analysis with urinary excretion as dependent variables and eating behaviour and food frequency as independent variables. Empirical weights of sodium excretion and sodium-to-potassium ratio were extracted. Preliminary validity was also assessed by randomly dividing the subjects into development and validation groups based on the correlation coefficient between estimates by the prediction formula and urinary excretion. Taste preference, soy sauce use at the table, frequency of pickled vegetables intake and number of bowls of miso soup were extracted as determinants of sodium excretion. Correlation coefficients between the estimates and urinary excretion for men and women were 0.42 and 0.43, respectively, for sodium and 0.49 and 0.50, respectively, for sodium-to-potassium ratio. This prediction formula may provide more accurate estimation of sodium intake and sodium-to-potassium ratio than the food composition approach., (© 2024. The Author(s).)
- Published
- 2024
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38. Quantitative live-cell imaging of secretion activity reveals dynamic immune responses.
- Author
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Yamagishi M, Miyata K, Kamatani T, Kabata H, Baba R, Tanaka Y, Suzuki N, Matsusaka M, Motomura Y, Kiniwa T, Koga S, Goda K, Ohara O, Funatsu T, Fukunaga K, Moro K, Uemura S, and Shirasaki Y
- Abstract
Quantification of cytokine secretion has facilitated advances in the field of immunology, yet the dynamic and varied secretion profiles of individual cells, particularly those obtained from limited human samples, remain obscure. Herein, we introduce a technology for quantitative live-cell imaging of secretion activity (qLCI-S) that enables high-throughput and dual-color monitoring of secretion activity at the single-cell level over several days, followed by transcriptome analysis of individual cells based on their phenotype. The efficacy of qLCI-S was demonstrated by visualizing the characteristic temporal pattern of cytokine secretion of group 2 innate lymphoid cells, which constitute less than 0.01% of human peripheral blood mononuclear cells, and by revealing minor subpopulations with enhanced cytokine production. The underlying mechanism of this feature was linked to the gene expression of stimuli receptors. This technology paves the way for exploring gene expression signatures linked to the spatiotemporal dynamic nature of various secretory functions., Competing Interests: M.Y. is the founder and shareholder of Live Cell Diagnosis, Ltd., the company established to develop LCI-S. Y.S. is an immediate family member of M.Y. N.S. is currently employed by Live Cell Diagnosis. K.G. is a shareholder of CYBO and Cupido., (© 2024 The Authors.)
- Published
- 2024
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39. Effect of temperature on actin filament corkscrewing driven by nonprocessive myosin IC.
- Author
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Sato Y, Yamagishi M, and Yajima J
- Subjects
- Temperature, Rotation, Actins metabolism, Actin Cytoskeleton metabolism, Myosins metabolism
- Abstract
Myosin family proteins are ATP-driven, actin filament-based motor proteins that generate force along actin filaments. In in vitro actin filament gliding assays, certain myosins generate rotation of gliding actin filaments around their long axes. In this study, we assessed the effects of temperature on the corkscrewing motion of actin filaments, including factors like gliding and rotational velocities and corkscrewing pitch. The corkscrewing motion was driven by a nonprocessive, full-length single-headed Drosophila myosin IC attached to an antibody adsorbed onto a cover glass. We performed an in vitro actin filament corkscrewing assay at temperatures ranging from 25 °C to 35 °C. We found that the gliding and rotational velocities and the pitch of corkscrewing actin filaments generated by myosin IC molecules increased with increasing temperature. Since the pitch is determined by dividing the gliding velocity by the rotational velocity, an increase in the pitch indicates that the gliding velocity increased faster than the rotational velocity with increasing temperature. These results suggest that temperature has distinct effects on the gliding and rotational forces produced by myosin IC, with implications for interpreting the temperature effect on torque-generation mechanisms driven by myosins on actin filaments at physiological temperatures., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2024
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- View/download PDF
40. Configuration of the neoaortic root after chimney reconstruction in the Norwood procedure.
- Author
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Asada S, Oda S, Maeda Y, Fujita S, Hongu H, Yamashita E, Nakatsuji H, Nagase T, Nakai R, Hayashi T, Ikarashi J, Goto Y, and Yamagishi M
- Subjects
- Humans, Child, Preschool, Child, Treatment Outcome, Aorta surgery, Echocardiography, Follow-Up Studies, Retrospective Studies, Hypoplastic Left Heart Syndrome surgery, Norwood Procedures adverse effects, Aortic Valve Insufficiency surgery, Aortic Valve Insufficiency etiology
- Abstract
Objectives: After staged reconstruction for hypoplastic left heart syndrome, the neoaortic root tends to dilate, and the incidence of significant neoaortic valve insufficiency increases with time. This study aimed to evaluate the mid-term outcomes of the neoaortic root geometries and valve function after chimney reconstruction in the Norwood procedure., Methods: Between 2013 and 2021, 20 consecutive patients who underwent chimney reconstruction during the Norwood procedure for hypoplastic left heart syndrome and its variants in our institution were enrolled. The actual diameters of the following points were measured, and Z-scores were calculated based on the normal aortic root geometries using the long axis view of echocardiography at the pre-Norwood stage and the lateral view of angiography at pre-Glenn, pre-Fontan, post-Fontan and follow-up (age 5-6 years) stages: neoaortic valve annulus; sinus of Valsalva; sinotubular junction; and ascending aorta just proximal to the anastomosis to the aortic arch. The degree of neoaortic valve regurgitation was evaluated by echocardiography at each stage., Results: The median follow-up period was 3.9 years. Neoaortic roots after chimney reconstruction were spared from progressive dilation over time. With growth, the conical configuration of the neoaortic roots was preserved without geometrical distortion. The Z-scores of the annulus, sinus of Valsalva, sinotubular junction and ascending aorta ranged roughly from 4 to 6, 4 to 6, 2 to 4 and 0 to 2, respectively. All neoaortic valves at each stage had mild or no regurgitation., Conclusions: Chimney reconstruction prevented neoaortic root dilation and avoided significant neoaortic valve regurgitation in the mid-term. These neoaortic dimensions with smooth flow profiles in the neoaorta after chimney reconstruction may have contributed to the current results. Further studies are needed to clarify the long-term outcomes., (© The Author(s) 2024. Published by Oxford University Press on behalf of the European Association for Cardio-Thoracic Surgery. All rights reserved.)
- Published
- 2024
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41. Intergenerational concordance of brain structure between depressed mothers and their never-depressed daughters
- Author
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Minami, F., primary, Hirano, J., additional, Ueda, R., additional, Takamiya, A., additional, Yamagishi, M., additional, Kamiya, K., additional, Mimura, M., additional, and Yamagata, B., additional
- Published
- 2023
- Full Text
- View/download PDF
42. Design of a Right Ventricular Simulator for the Evaluation of Artificial Pulmonary Valve
- Author
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Tsuboko, Y., Matsuo, S., Shiraishi, Y., Miura, H., Yamada, A., Hashem, Mohamed O., Ito, T., Sano, K., Taira, Y., Akutsu, T., Feng, Z., Umezu, Mitsuo, Yamagishi, M., Saiki, Y., Yambe, T., MAGJAREVIC, Ratko, Editor-in-chief, Ładyzynsk, Piotr, Series editor, Ibrahim, Fatimah, Series editor, Lackovic, Igor, Series editor, Rock, Emilio Sacristan, Series editor, and Goh, James, editor
- Published
- 2014
- Full Text
- View/download PDF
43. AKARI observations of interstellar dust grains in our Galaxy and nearby galaxies
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Kaneda, H., Ishihara, D., Kobata, K., Kondo, T., Oyabu, S., Yamada, R., Yamagishi, M., Onaka, T., and Suzuki, T.
- Published
- 2014
- Full Text
- View/download PDF
44. Optical Interconnection Technology for the Next Generation Supercomputers
- Author
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Sakai, J., Noda, A., Yamagishi, M., Ohtsuka, T., Sunaga, K., Sugita, H., Ono, H., Yashiki, K., Kouta, H., Resch, Michael, editor, Roller, Sabine, editor, Benkert, Katharina, editor, Galle, Martin, editor, Bez, Wolfgang, editor, and Kobayashi, Hiroaki, editor
- Published
- 2010
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- View/download PDF
45. A Feasibility Study Assessed the Predictive Ability of MRI Delta-Radiomics for GU Toxicity and IPSS Changes in PCa Hypofractionated RT
- Author
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Inokuchi, H., Mukumoto, N., Sakagami, M., Yamagishi, M., Hamaura, N., Hayashi, K., Ogino, R., and Shibuya, K.
- Published
- 2024
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- View/download PDF
46. Development of Blocked-Impurity-Band-Type Ge Detectors Fabricated with the Surface-Activated Wafer Bonding Method for Far-Infrared Astronomy
- Author
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Hanaoka, M., Kaneda, H., Oyabu, S., Yamagishi, M., Hattori, Y., Ukai, S., Shichi, K., Wada, T., Suzuki, T., Watanabe, K., Nagase, K., Baba, S., and Kochi, C.
- Published
- 2016
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- View/download PDF
47. Preliminary Design of the Mechanical Circulation Assist Device for Fontan Circulation using Shape Memory Alloy Fibers
- Author
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Yamada, A., Shiraishi, Y., Sugai, T. K., Miura, H., Shiga, T., Hashem, M. O., Koga, C., Hashimoto, H., Tsuboko, Y., Yambe, T., Yamagishi, M., Homma, D., and Long, Mian, editor
- Published
- 2013
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48. Dysbiosis of the gut microbiota in children with severe motor and intellectual disabilities receiving enteral nutrition: A pilot study.
- Author
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Nakai Y, Akagawa S, Fujishiro S, Akagawa Y, Yamagishi M, Yamanouchi S, Kimata T, Ohashi A, Hashiyada M, Akane A, Tsuji S, and Kaneko K
- Subjects
- Humans, Child, Enteral Nutrition, Pilot Projects, Butyric Acid, Dysbiosis therapy, Dysbiosis microbiology, RNA, Ribosomal, 16S genetics, Feces microbiology, Bacteria genetics, Prebiotics, Gastrointestinal Microbiome, Intellectual Disability therapy
- Abstract
Background: Children with severe motor and intellectual disabilities (SMIDs) frequently and continuously receive enteral nutrition and medications and lack adequate exercise, which may lead to dysbiosis, an imbalance in the composition of the gut microbiota. However, studies on the composition of gut microbiota in children with SMIDs are limited. Therefore, we aimed to examine the characteristics of the gut microbiota in children with SMIDs., Methods: 16S rRNA gene sequencing was performed using fecal samples of 10 children with SMIDs, who received enteral nutrition through a gastric fistula or gastric tube (SMID group: median age, 10.0 years), and 19 healthy children (healthy control [HC] group: median age, 9.0 years). Microbial diversity, microbial composition, and abundance of butyric acid-producing bacteria were compared between the groups. Daily dietary fiber intake in the SMID group was evaluated using questionnaires., Results: The Shannon and Simpson indices (alpha diversity indices) were significantly lower in the SMID group than those in the HC group. Beta diversity analysis identified different clusters. Compared with the HC group, Clostridiales and butyric acid-producing bacteria were less abundant and Bacteroidales were more abundant in the SMID group. Dietary fiber intake in the SMID group was approximately two-thirds of the estimated average requirement for healthy Japanese children., Conclusion: Children with SMIDs showed dysbiosis with alteration in the microbial diversity, which could partly be attributed to their low dietary fiber intake. Further studies, with the intervention of prebiotics, probiotics, and synbiotics, are warranted to improve dysbiosis in children with SMIDs., (© 2022 American Society for Parenteral and Enteral Nutrition.)
- Published
- 2023
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49. Hypertrophic Cardiomyopathy Predicts Thromboembolism and Heart Failure in Patients With Nonvalvular Atrial Fibrillation - A Prospective Analysis From the Hokuriku-Plus AF Registry.
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Tsuda T, Hayashi K, Kato T, Kusayama T, Nakagawa Y, Nomura A, Tada H, Usui S, Sakata K, Kawashiri MA, Fujino N, Yamagishi M, and Takamura M
- Subjects
- Aged, Aged, 80 and over, Humans, Male, Middle Aged, Prospective Studies, Registries, Risk Factors, Stroke Volume, Ventricular Function, Left, Female, Atrial Fibrillation complications, Atrial Fibrillation diagnosis, Atrial Fibrillation epidemiology, Cardiomyopathy, Hypertrophic complications, Cardiomyopathy, Hypertrophic epidemiology, Heart Failure epidemiology, Heart Failure complications, Stroke etiology, Thromboembolism etiology, Thromboembolism complications
- Abstract
Background: The prognostic effect of concomitant hypertrophic cardiomyopathy (HCM) on adverse events in patients with atrial fibrillation (AF) has not been evaluated in a multicenter prospective cohort study in Japan., Methods and results: Using the Hokuriku-Plus AF Registry, 1,396 patients with nonvalvular AF (1,018 men, 72.3±9.7 years old) were assessed prospectively; 72 (5.2%) had concomitant HCM. During a median follow-up of 5.0 years (interquartile range 3.5-5.3 years), 79 cases of thromboembolism (1.3 per 100 person-years) and 192 of heart failure (HF) (3.2 per 100 person-years) occurred. Kaplan-Meier analysis revealed that the HCM group had a significantly greater incidence of thromboembolism (P=0.002 by log-rank test) and HF (P<0.0001 by a log-rank test) than the non-HCM group. The Cox proportional hazards model demonstrated that persistent AF (adjusted hazard ratio 2.98, 95% confidence interval 1.56-6.21), the CHA
2 DS2 -VASc score (1.35, 1.18-1.54), and concomitant HCM (2.48, 1.16-4.79) were significantly associated with thromboembolism. Conversely, concomitant HCM (2.81, 1.72-4.43), older age (1.07, 1.05-1.10), lower body mass index (0.95, 0.91-0.99), a history of HF (2.49, 1.77-3.52), and lower left ventricular ejection fraction (0.98, 0.97-0.99) were significantly associated with the development of HF., Conclusions: Concomitant HCM predicts the incidence of thromboembolism and HF in AF patients.- Published
- 2023
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50. Membrane-bound myosin IC drives the chiral rotation of the gliding actin filament around its longitudinal axis.
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Sato Y, Yoshimura K, Matsuda K, Haraguchi T, Marumo A, Yamagishi M, Sato S, Ito K, and Yajima J
- Subjects
- Animals, Rotation, Myosin Type I metabolism, Cell Membrane metabolism, Actins metabolism, Drosophila melanogaster metabolism, Actin Cytoskeleton metabolism
- Abstract
Myosin IC, a single-headed member of the myosin I family, specifically interacts with anionic phosphatidylinositol 4,5-bisphosphate (PI[4,5]P
2 ) in the cell membrane via the pleckstrin homology domain located in the myosin IC tail. Myosin IC is widely expressed and physically links the cell membrane to the actin cytoskeleton; it plays various roles in membrane-associated physiological processes, including establishing cellular chirality, lipid transportation, and mechanosensing. In this study, we evaluated the motility of full-length myosin IC of Drosophila melanogaster via the three-dimensional tracking of quantum dots bound to actin filaments that glided over a membrane-bound myosin IC-coated surface. The results revealed that myosin IC drove a left-handed rotational motion in the gliding actin filament around its longitudinal axis, indicating that myosin IC generated a torque perpendicular to the gliding direction of the actin filament. The quantification of the rotational motion of actin filaments on fluid membranes containing different PI(4,5)P2 concentrations revealed that the rotational pitch was longer at lower PI(4,5)P2 concentrations. These results suggest that the torque generated by membrane-bound myosin IC molecules can be modulated based on the phospholipid composition of the cell membrane., (© 2023. The Author(s).)- Published
- 2023
- Full Text
- View/download PDF
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