97 results on '"Caliebe, A"'
Search Results
2. Interaction of Mitochondrial Polygenic Score and Lifestyle Factors in LRRK2 p.Gly2019Ser Parkinsonism
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Lüth, Theresa, primary, Gabbert, Carolin, additional, Koch, Sebastian, additional, König, Inke R., additional, Caliebe, Amke, additional, Laabs, Björn‐Hergen, additional, Hentati, Faycel, additional, Sassi, Samia Ben, additional, Amouri, Rim, additional, Spielmann, Malte, additional, Klein, Christine, additional, Grünewald, Anne, additional, Farrer, Matthew J., additional, and Trinh, Joanne, additional
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- 2023
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3. Validation and beyond: Next generation sequencing of forensic casework samples including challenging tissue samples from altered human corpses using the <scp>MiSeq FGx</scp> system
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Alina Senst, Amke Caliebe, Eva Scheurer, and Iris Schulz
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Forensic Genetics ,Genotype ,Cadaver ,Genetics ,High-Throughput Nucleotide Sequencing ,Humans ,Reproducibility of Results ,DNA ,Sequence Analysis, DNA ,DNA Fingerprinting ,Polymorphism, Single Nucleotide ,Microsatellite Repeats ,Pathology and Forensic Medicine - Abstract
The proceeding developments in next generation sequencing (NGS) technologies enable increasing discrimination power for short tandem repeat (STR) analyses and provide new possibilities for human identification. Therefore, the growing relevance and demand in forensic casework display the need for reliable validation studies and experiences with challenging DNA samples. The presented validation of the MiSeq FGx system and the ForenSeq™ DNA Signature Prep Kit (1) investigated sensitivity, repeatability, reproducibility, concordance, pooling variations, DNA extraction method variances, DNA mixtures, degraded, and casework samples and (2) optimized the sequencing workflow for challenging samples from human corpses by testing additional PCR purification, pooling adjustments, and adapter volume reductions. Overall results indicate the system's reliability in concordance to traditional capillary electrophoresis (CE)-based genotyping and reproducibility of sequencing data. Genotyping success rates of 100% were obtained down to 62.5 pg DNA input concentrations. Autosomal STR (aSTR) profiles of artificially degraded samples revealed significantly lower numbers of locus and allelic dropouts than CE. However, it was observed that the system still exposed drawbacks when sequencing highly degraded and inhibited samples from human remains. Due to the lack of studies evaluating the sequencing success of samples from decomposed or skeletonised corpses, the presented optimisation studies provide valuable recommendations such as an additional PCR purification, an increase in library pooling volumes, and a reduction of adapter volumes for samples with concentrations ≥31.2 pg. Thus, this research highlights the importance of all-encompassing validation studies for implementing novel technologies in forensic casework and presents recommendations for challenging samples.
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- 2022
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4. Myocardial Deformation in the Pediatric Age Group: Normal Values for Strain and Strain Rate Using <scp>2D</scp> Magnetic Resonance Feature Tracking
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Inga Voges, Inken Negwer, Amke Caliebe, Simona Boroni Grazioli, Piers E.F. Daubeney, Anselm Uebing, Dudley J. Pennell, and Sylvia Krupickova
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Male ,Magnetic Resonance Spectroscopy ,Adolescent ,Heart Ventricles ,Magnetic Resonance Imaging, Cine ,Reproducibility of Results ,Ventricular Function, Left ,Reference Values ,Child, Preschool ,Humans ,Female ,Radiology, Nuclear Medicine and imaging ,Child ,Retrospective Studies - Abstract
Myocardial deformation can be assessed from routine cardiac magnetic resonance (MR) images using two-dimensional feature tracking (2D-FT). Although reference values are essential for implementation of strain imaging in clinical practice, data for the healthy pediatric age group are limited.To provide pediatric MR reference values for strain and strain rate for all four heart chambers.Retrospective.One hundred and fifty-seven healthy children from two institutions (102 male, age 4.7-18 years).1.5 T; balanced steady-state free precession sequence.Left ventricular (LV) global and regional longitudinal, circumferential, and radial strain and strain rate as well as right ventricular (RV) and atrial global and regional longitudinal strain and strain rate were measured in two-, three-, and four-chamber views and the short axis stack. The relationships between strain parameters and age, height, weight, and gender were investigated. Age- and height-specific centile curves and tables were created for LV strain and strain rate. For all other global strain parameters, the mean was calculated as a reference.Lambda-mu-sigma (LMS)-method of Cole and Green, univariable, and multivariable linear regression models. A P value0.05 was considered to be statistically significant.Age, height and weight had a significant influence on LV global strain values. These parameters also showed an influence on RV strain but only in boys (girls P = 0.12) and none of the variables had a significant influence on atrial strain (P = 0.19-0.49). Gender differences were only found for RV strain values.Pediatric potential reference values for myocardial deformation parameters of both ventricles and atria are provided. The values may serve as a reference in future studies and clinical practice.3 TECHNICAL EFFICACY: Stage 5.
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- 2022
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5. Current allele distribution of the human longevity gene <scp> APOE </scp> in Europe can mainly be explained by ancient admixture
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Daniel Kolbe, Nicolas A. da Silva, Janina Dose, Guillermo G. Torres, Amke Caliebe, Ben Krause‐Kyora, and Almut Nebel
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Aging ,Cell Biology - Published
- 2023
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6. Current allele distribution of the human longevity geneAPOEin Europe can mainly be explained by ancient admixture
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Kolbe, Daniel, primary, da Silva, Nicolas A., additional, Dose, Janina, additional, Torres, Guillermo G., additional, Caliebe, Amke, additional, Krause‐Kyora, Ben, additional, and Nebel, Almut, additional
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- 2023
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7. Including diverse and admixed populations in genetic epidemiology research
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Caliebe, A, Tekola-Ayele, F, Darst, BF, Wang, X, Song, YE, Gui, J, Sebro, RA, Balding, DJ, Saad, M, Dube, M-P, Caliebe, A, Tekola-Ayele, F, Darst, BF, Wang, X, Song, YE, Gui, J, Sebro, RA, Balding, DJ, Saad, M, and Dube, M-P
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The inclusion of ancestrally diverse participants in genetic studies can lead to new discoveries and is important to ensure equitable health care benefit from research advances. Here, members of the Ethical, Legal, Social, Implications (ELSI) committee of the International Genetic Epidemiology Society (IGES) offer perspectives on methods and analysis tools for the conduct of inclusive genetic epidemiology research, with a focus on admixed and ancestrally diverse populations in support of reproducible research practices. We emphasize the importance of distinguishing socially defined population categorizations from genetic ancestry in the design, analysis, reporting, and interpretation of genetic epidemiology research findings. Finally, we discuss the current state of genomic resources used in genetic association studies, functional interpretation, and clinical and public health translation of genomic findings with respect to diverse populations.
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- 2022
8. Pediatric Cardiac Magnetic Resonance Reference Values for Biventricular Volumes Derived From Different Contouring Techniques
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Voges, Inga, primary, Caliebe, Amke, additional, Hinz, Sophia, additional, Boroni Grazioli, Simona, additional, Gabbert, Dominik D., additional, Daubeney, Piers E. F., additional, Uebing, Anselm S., additional, Pennell, Dudley J., additional, and Krupickova, Sylvia, additional
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- 2022
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9. Reference Values for Pediatric Atrial Volumes Assessed by Steady‐State Free‐Precession Magnetic Resonance Imaging Using Monoplane and Biplane Area‐Length Methods
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Voges, Inga, primary, Caliebe, Amke, additional, Hinz, Sophia, additional, Boroni Grazioli, Simona, additional, Gabbert, Daniel Dominik, additional, Wegner, Philip, additional, Uebing, Anselm Sebastian, additional, Daubeney, Piers E. F., additional, Pennell, Dudley J., additional, and Krupickova, Sylvia, additional
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- 2022
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10. Validation and beyond: Next generation sequencing of forensic casework samples including challenging tissue samples from altered human corpses using the MiSeq FGx system
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Senst, Alina, primary, Caliebe, Amke, additional, Scheurer, Eva, additional, and Schulz, Iris, additional
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- 2022
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11. Myocardial Deformation in the Pediatric Age Group: Normal Values for Strain and Strain Rate Using 2D Magnetic Resonance Feature Tracking
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Voges, Inga, primary, Negwer, Inken, additional, Caliebe, Amke, additional, Boroni Grazioli, Simona, additional, Daubeney, Piers E.F., additional, Uebing, Anselm, additional, Pennell, Dudley J., additional, and Krupickova, Sylvia, additional
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- 2022
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12. Binding of boswellic acids to functional proteins of the SARS‐CoV‐2 virus: Bioinformatic studies
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Caliebe, Reinhard H., primary, Scior, Thomas, additional, and Ammon, Hermann P. T., additional
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- 2021
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13. Reference Values for Ventricular Volumes and Pulmonary Artery Dimensions in Pediatric Patients with Transposition of the Great Arteries After Arterial Switch Operation
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Voges, Inga, primary, Boll, Christien, additional, Caliebe, Amke, additional, Gabbert, Dominik, additional, Uebing, Anselm, additional, and Krupickova, Sylvia, additional
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- 2021
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14. The serotonin receptor 2A (HTR2A) rs6313 variant is associated with higher ongoing pain and signs of central sensitization in neuropathic pain patients
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Sachau, Juliane, primary, Bruckmueller, Henrike, additional, Gierthmühlen, Janne, additional, Magerl, Walter, additional, May, Denisa, additional, Binder, Andreas, additional, Forstenpointner, Julia, additional, Koetting, Judith, additional, Maier, Christoph, additional, Tölle, Thomas R., additional, Treede, Rolf‐Detlef, additional, Berthele, Achim, additional, Caliebe, Amke, additional, Diesch, Carolin, additional, Flor, Herta, additional, Huge, Volker, additional, Maihöfner, Christian, additional, Rehm, Stefanie, additional, Kersebaum, Dilara, additional, Fabig, Sophie‐Charlotte, additional, Vollert, Jan, additional, Rolke, Roman, additional, Stemmler, Susanne, additional, Sommer, Claudia, additional, Westermann, Andrea, additional, Cascorbi, Ingolf, additional, and Baron, Ralf, additional
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- 2020
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15. The serotonin receptor 2A (HTR2A) rs6313 variant is associated with higher ongoing pain and signs of central sensitization in neuropathic pain patients
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Christoph Maier, Roman Rolke, Janne Gierthmühlen, Ingolf Cascorbi, Thomas R. Tölle, Dilara Kersebaum, Sophie-Charlotte Fabig, Rolf-Detlef Treede, Henrike Bruckmueller, Achim Berthele, Christian Maihöfner, Stefanie Rehm, Claudia Sommer, Carolin Diesch, Amke Caliebe, Julia Forstenpointner, Jan Vollert, Volker Huge, Walter Magerl, Andrea Westermann, Andreas Binder, Susanne Stemmler, Herta Flor, Denisa May, Judith Koetting, Juliane Sachau, and Ralf Baron
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Oncology ,medicine.medical_specialty ,rs6311 ,Rs6313 ,Somatosensory system ,VDP::Medisinske Fag: 700::Klinisk medisinske fag: 750::Nevrologi: 752 ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Animals ,Humans ,Receptor, Serotonin, 5-HT2A ,030212 general & internal medicine ,5-HT receptor ,Central Nervous System Sensitization ,business.industry ,Chronic pain ,Sensory loss ,medicine.disease ,ddc ,Anesthesiology and Pain Medicine ,Hyperalgesia ,Neuropathic pain ,VDP::Medical disciplines: 700::Clinical medical disciplines: 750::Neurology: 752 ,Neuralgia ,Chronic Pain ,medicine.symptom ,business ,030217 neurology & neurosurgery - Abstract
European journal of pain : EJP 25(3), 595-611 (2021). doi:10.1002/ejp.1696, Published by Wiley-Blackwell, Malden, Mass. [u.a.]
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- 2019
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16. Mutations in <scp>CDK</scp> 5 <scp>RAP</scp> 2 cause Seckel syndrome
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Zehra Oya Uyguner, Diana Zahnleiter, Esther Pohl, Yun Li, Almuth Caliebe, Nina Bögershausen, Karen E. Brown, Hülya Kayserili, Umut Altunoglu, Christian Thiel, Anita Rauch, Gudrun Nürnberg, Bernd Wollnik, Peter Nürnberg, Gökhan Yigit, Elisabeth Rosser, Karabey, Hülya Kayserili (ORCID 0000-0003-0376-499X & YÖK ID 7945), Yiğit, G., Brown, K. E., Pohl, E., Caliebe, A., Zahnleiter, D., Rosser, E., Bögershausen, N., Uyguner, Z. O., Altunoğlu, U., Nürnberg, G., Nürnberg, P., Rauch, A., Li, Y., Thiel, C. T., Wollnik, B., School of Medicine, and Department of Medical Genetics
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Genetics ,Microcephaly ,Medicine ,Medical genetics ,CDK5RAP2 ,Original Articles ,Biology ,CEP215 ,medicine.disease ,Bioinformatics ,Digenic inheritance ,Seckel syndrome ,Intellectual disability ,medicine ,Spindle organization ,microcephaly ,primordial dwarfism ,Primordial dwarfism ,Molecular Biology ,Mitosis ,Genetics (clinical) - Abstract
Seckel syndrome is a heterogeneous, autosomal recessive disorder marked by prenatal proportionate short stature, severe microcephaly, intellectual disability, and characteristic facial features. Here, we describe the novel homozygous splice-site mutations c.383+1G>C and c.4005-9A>G in CDK5RAP2 in two consanguineous families with Seckel syndrome. CDK5RAP2 (CEP215) encodes a centrosomal protein which is known to be essential for centrosomal cohesion and proper spindle formation and has been shown to be causally involved in autosomal recessive primary microcephaly. We establish CDK5RAP2 as a disease-causing gene for Seckel syndrome and show that loss of functional CDK5RAP2 leads to severe defects in mitosis and spindle organization, resulting in cells with abnormal nuclei and centrosomal pattern, which underlines the important role of centrosomal and mitotic proteins in the pathogenesis of the disease. Additionally, we present an intriguing case of possible digenic inheritance in Seckel syndrome: A severely affected child of nonconsanguineous German parents was found to carry heterozygous mutations in CDK5RAP2 and CEP152. This finding points toward a potential additive genetic effect of mutations in CDK5RAP2 and CEP152., German Federal Ministry of Education and Research (BMBF); Scientific and Technological Research Council of Turkey (TÜBİTAK)
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- 2015
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17. Binding of boswellic acids to functional proteins of the SARS‐CoV‐2 virus: Bioinformatic studies
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Hermann P. T. Ammon, Thomas Scior, and Reinhard H Caliebe
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education ,Pharmaceutical Science ,RNA-dependent RNA polymerase ,Antiviral Agents ,SARS‐CoV‐2 ,Structure-Activity Relationship ,Viral Proteins ,chemistry.chemical_compound ,Protein structure ,RNA polymerase ,Drug Discovery ,Humans ,boswellic acids ,Prodrugs ,Boswellia ,Polyproteins ,chemistry.chemical_classification ,Alanine ,Binding Sites ,Full Paper ,biology ,SARS-CoV-2 ,Anti-Inflammatory Agents, Non-Steroidal ,fungi ,COVID-19 ,Computational Biology ,Active site ,molecular docking ,Full Papers ,Adenosine Monophosphate ,Triterpenes ,COVID-19 Drug Treatment ,Nucleoprotein ,Amino acid ,Molecular Docking Simulation ,functional proteins ,Nucleoproteins ,chemistry ,Biochemistry ,RGS‐P3 ,Spike Glycoprotein, Coronavirus ,biology.protein ,Phosphorylation ,Glycoprotein ,Protein Binding - Abstract
Boswellic acids (BAs) have been shown to possess antiviral activity. Using bioinformatic methods, it was tested whether or not acetyl‐11‐keto‐β‐boswellic acid (AKBA), 11‐keto‐β‐boswellic acid (KBA), β‐boswellic acid (BBA), and the phosphorylated active metabolite of Remdesivir® (RGS‐P3) bind to functional proteins of SARS‐CoV‐2, that is, the replicase polyprotein P0DTD1, the spike glycoprotein P0DTC2, and the nucleoprotein P0DTC9. Using P0DTD1, AKBA and KBA showed micromolar binding affinity to the RNA‐dependent RNA polymerase (RdRp) and to the main proteinase complex Mpro. Phosphorylated BAs even bond in the nanomolar range. Due to their positive and negative charges, BAs and RGS‐P3 bond to corresponding negative and positive areas of the protein. BAs and RGS‐P3 docked in the tunnel‐like cavity of RdRp. BAs also docked into the elongated surface rim of viral Mpro. In both cases, binding occurred with active site amino acids in the lower micromolecular to upper nanomolar range. KBA, BBA, and RGS‐P3 also bond to P0DTC2 and P0DTC9. The binding energies for BAs were in the range of −5.8 to −6.3 kcal/mol. RGS‐P3 and BAs occluded the centrally located pore of the donut‐like protein structure of P0DTC9 and, in the case of P0DTC2, RGS‐P3 and BAs impacted the double‐wing‐like protein structure. The data of this bioinformatics study clearly show that BAs bind to three functional proteins of the SARS‐CoV‐2 virus responsible for adhesion and replication, as does RGS‐P3, a drug on the market to treat this disease. The binding effectiveness of BAs can be increased through phosphate esterification. Whether or not BAs are druggable against the SARS‐CoV‐2 disease remains to be established., Bioinformatic methods showed that acetyl‐11‐keto‐β‐boswellic acid, 11‐keto‐β‐boswellic acid, β‐boswellic acid, and the phosphorylated active metabolite of Remdesivir® bind to functional proteins of SARS‐CoV‐2: the replicase polyprotein P0DTD1, the spike glycoprotein P0DTC2, and the nucleoprotein P0DTC9. The binding effectiveness of the boswellic acids can be increased through phosphate esterification.
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- 2021
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18. Semipolar GaN-based heterostructures on foreign substrates
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Gulnaz Gahramanova, Ferdinand Scholz, Marian Caliebe, Klaus Thonke, Dominik Heinz, Martin Klein, Tobias Meisch, Matthias Hocker, Robert A. R. Leute, and Junjun Wang
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010302 applied physics ,Coalescence (physics) ,Materials science ,business.industry ,Doping ,Heterojunction ,02 engineering and technology ,Electroluminescence ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Epitaxy ,01 natural sciences ,Electronic, Optical and Magnetic Materials ,0103 physical sciences ,Sapphire ,Optoelectronics ,0210 nano-technology ,business ,Quantum well ,Stacking fault - Abstract
This paper reviews our recent investigations about semipolar GaN-based optoelectronic heterostructures grown on foreign substrates. Two basically different approaches are discussed, both making use of epitaxial growth in the polar c-direction to minimize any crystalline defects. By selective area growth, stripes with triangular cross-section have been formed with semipolar side-facets, on which quantum well and electroluminescence test structures have been deposited. By careful optimisation of many growth parameters, we could drastically increase the growth temperature of GaInN quantum wells emitting beyond 500 nm. In the second approach, the GaN growth starts on inclined sapphire c-planes, which form the side facets of trenches etched into the substrates. After coalescence, planar semipolar GaN layers can be achieved. We investigated various sapphire wafer orientations leading to {112‾2}, {101‾1}, and {202‾1} layers. After careful optimisation with a major focus on the decrease of the stacking fault density, we have also investigated the doping behaviour of such semipolar structures. Eventually, full electroluminescence test structures could be grown.
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- 2015
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19. Non- and semipolar AlInN one-dimensionally lattice-matched to GaN for realization of relaxed buffer layers for strain engineering in optically active GaN-based devices
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Tobias Meisch, Philipp Horenburg, Andreas Hangleiter, Heiko Bremers, Marian Caliebe, Uwe Rossow, Ferdinand Scholz, and E. R. Buß
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010302 applied physics ,Materials science ,Rietveld refinement ,business.industry ,02 engineering and technology ,Nitride ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Mole fraction ,01 natural sciences ,Electronic, Optical and Magnetic Materials ,Strain engineering ,Lattice (order) ,0103 physical sciences ,Sapphire ,Optoelectronics ,Metalorganic vapour phase epitaxy ,0210 nano-technology ,business ,Quantum well - Abstract
In this contribution, we demonstrate that for non-and semipolar AlInN one-dimensionally lattice-matched to GaN, controlled relaxation in different in-plane directions of the growth surface can be induced. All of our samples were grown on (11 (2) over bar2) GaN templates on patterned r-plane sapphire as well as on moriented 6H-SiC substrates and free-standing pseudo-bulk GaN substrates. The InN mole fraction of the Al1-xInxN is varied from 18% up to 28% corresponding to one-dimensional lattice matching in various in-plane directions of the growth surface. By controlling the composition as well as the thickness, we realized one-dimensional relaxation of the AlInN layers along the nonlattice-matched direction. This opens new perspectives for strain and polarization engineering in optically active layers grown subsequently and gives new possibilities to design high indium-containing GaInN quantum well structures for efficient long wavelength light emitters. (C) 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim
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- 2015
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20. Growth and coalescence studies of (112‾2) oriented GaN on pre-structured sapphire substrates using marker layers
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Yisong Han, Klaus Thonke, Matthias Hocker, Colin J. Humphreys, Marian Caliebe, Tobias Meisch, and Ferdinand Scholz
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010302 applied physics ,Coalescence (physics) ,Materials science ,business.industry ,Stacking ,Cathodoluminescence ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Electronic, Optical and Magnetic Materials ,Optics ,Transmission electron microscopy ,0103 physical sciences ,Sapphire ,Optoelectronics ,Wafer ,Metalorganic vapour phase epitaxy ,Growth rate ,0210 nano-technology ,business - Abstract
In this article, the growth and coalescence of semi-polar oriented GaN layers, deposited on pre-structured r-plane sapphire substrates, is studied with the help of Si-doped marker layers. It has been found to be very important to adjust the shape of the initial GaN stripes by varying the growth temperature to obtain not only a smooth surface, but also a small density of basal plane stacking faults (BSFs) and threading dislocations (TDs) on the wafer surface. With the help of transmission electron microscopy (TEM) and cathodoluminescence measurements (CL), we can conclude that during growth, we need to achieve a compromise between small BSF density, small TD density, and perfect coalescence with smooth surface, free of fissures, and other growth artifacts. Also the formation of arrow-head-shaped surface artifacts called “chevrons” [1, 2] can be understood to be caused by imperfect coalescence. We observe with the help of the marker layers that the growth rate fluctuates between neighboring stripes. This effect strongly increases for higher growth temperature.
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- 2015
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21. Semipolar (112―2) InGaN light-emitting diodes grown on chemically-mechanically polished GaN templates
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Brian Corbett, Duc V. Dinh, Markus Weyers, Mahbub Akhter, Grzegorz Kozlowski, Donagh O'Mahony, Marian Caliebe, Frank Brunner, Peter J. Parbrook, Pleun Maaskant, Ferdinand Scholz, and Silvino Presa
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Materials science ,business.industry ,Polishing ,Surfaces and Interfaces ,Nitride ,Condensed Matter Physics ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,law.invention ,Wavelength ,Optics ,law ,Materials Chemistry ,Optoelectronics ,Wafer ,Metalorganic vapour phase epitaxy ,Electrical and Electronic Engineering ,business ,Luminescence ,Diode ,Light-emitting diode - Abstract
authoren InGaN multiple quantum well light-emitting diodes (LEDs) were grown on chemically–mechanically polished (112―2) GaN templates (up to 100 mm diameter wafers) by metalorganic vapour phase epitaxy. Initial GaN overgrowth on the polished templates in nitrogen ambient maintained the polished surface. The peak emission wavelength of the LEDs varied from 445 to 550 nm. In contrast to the simultaneously grown LEDs on as-grown templates, the LEDs on polished templates have very smooth surface morphology, uniform luminescence, and higher output power. Fluorescence images of 445 nm LEDs grown on (a) as-grown and (b) polished (112―2) GaN templates.
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- 2015
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22. Large scale multifactorial likelihood quantitative analysis of BRCA1 and BRCA2 variants: An ENIGMA resource to support clinical variant classification
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Parsons, Michael T., Tudini, Emma, Li, Hongyan, Hahnen, Eric, Wappenschmidt, Barbara, Feliubadalo, Lidia, Aalfs, Cora M., Agata, Simona, Aittomaki, Kristiina, Alducci, Elisa, Concepcion Alonso-Cerezo, Maria, Arnold, Norbert, Auber, Bernd, Austin, Rachel, Azzollini, Jacopo, Balmana, Judith, Barbieri, Elena, Bartram, Claus R., Blanco, Ana, Bluemcke, Britta, Bonache, Sandra, Bonanni, Bernardo, Borg, Ake, Bortesi, Beatrice, Brunet, Joan, Bruzzone, Carla, Bucksch, Karolin, Cagnoli, Giulia, Caldes, Trinidad, Caliebe, Almuth, Caligo, Maria A., Calvello, Mariarosaria, Capone, Gabriele L., Caputo, Sandrine M., Carnevali, Ileana, Carrasco, Estela, Caux-Moncoutier, Virginie, Cavalli, Pietro, Cini, Giulia, Clarke, Edward M., Concolino, Paola, Cops, Elisa J., Cortesi, Laura, Couch, Fergus J., Darder, Esther, de la Hoya, Miguel, Dean, Michael, Debatin, Irmgard, Del Valle, Jesus, Delnatte, Capucine, Derive, Nicolas, Diez, Orland, Ditsch, Nina, Domchek, Susan M., Dutrannoy, Veronique, Eccles, Diana M., Ehrencrona, Hans, Enders, Ute, Evans, D. Gareth, Farra, Chantal, Faust, Ulrike, Felbor, Ute, Feroce, Irene, Fine, Miriam, Foulkes, William D., Galvao, Henrique Cr, Gambino, Gaetana, Gehrig, Andrea, Gensini, Francesca, Gerdes, Anne-Marie, Germani, Aldo, Giesecke, Jutta, Gismondi, Viviana, Gomez, Carolina, Garcia, Encarna B. Gomez, Gonzalez, Sara, Grau, Elia, Grill, Sabine, Gross, Eva, Guerrieri-Gonzaga, Aliana, Guillaud-Bataille, Marine, Gutierrez-Enriquez, Sara, Haaf, Thomas, Hackmann, Karl, Hansen, Thomas Vo, Harris, Marion, Hauke, Jan, Heinrich, Tilman, Hellebrand, Heide, Herold, Karen N., Honisch, Ellen, Horvath, Judit, Houdayer, Claude, Huebbel, Verena, Iglesias, Silvia, Izquierdo, Angel, James, Paul A., Janssen, Linda Am, Jeschke, Udo, Kaulfuss, Silke, Keupp, Katharina, Kiechle, Marion, Koelbl, Alexandra, Krieger, Sophie, Kruse, Torben A., Kvist, Anders, Lalloo, Fiona, Larsen, Mirjam, Lattimore, Vanessa L., Lautrup, Charlotte, Ledig, Susanne, Leinert, Elena, Lewis, Alexandra L., Lim, Joanna, Loeffler, Markus, Lopez-Fernandez, Adria, Lucci-Cordisco, Emanuela, Maass, Nicolai, Manoukian, Siranoush, Marabelli, Monica, Matricardi, Laura, Meindl, Alfons, Michelli, Rodrigo D., Moghadasi, Setareh, Moles-Fernandez, Alejandro, Montagna, Marco, Montalban, Gemma, Monteiro, Alvaro N., Montes, Eva, Mori, Luigi, Moserle, Lidia, Mueller, Clemens R., Mundhenke, Christoph, Naldi, Nadia, Nathanson, Katherine L., Navarro, Matilde, Nevanlinna, Heli, Nichols, Cassandra B., Niederacher, Dieter, Nielsen, Henriette R., Ong, Kai-ren, Pachter, Nicholas, Palmero, Edenir, I, Papi, Laura, Pedersen, Inge Sokilde, Peissel, Bernard, Perez-Segura, Pedro, Pfeifer, Katharina, Pineda, Marta, Pohl-Rescigno, Esther, Poplawski, Nicola K., Porfirio, Berardino, Quante, Anne S., Ramser, Juliane, Reis, Rui M., Revillion, Francoise, Rhiem, Kerstin, Riboli, Barbara, Ritter, Julia, Rivera, Daniela, Rofes, Paula, Rump, Andreas, Salinas, Monica, Sanchez de Abajo, Ana Maria, Schmidt, Gunnar, Schoenwiese, Ulrike, Seggewiss, Jochen, Solanes, Ares, Steinemann, Doris, Stiller, Mathias, Stoppa-Lyonnet, Dominique, Sullivan, Kelly J., Susman, Rachel, Sutter, Christian, Tavtigian, Sean, V, Teo, Soo H., Teule, Alex, Thomassen, Mads, Tibiletti, Maria Grazia, Tischkowitz, Marc, Tognazzo, Silvia, Toland, Amanda E., Tornero, Eva, Torngren, Therese, Torres-Esquius, Sara, Toss, Angela, Trainer, Alison H., Tucker, Katherine M., van Asperen, Christi J., van Mackelenbergh, Marion T., Varesco, Liliana, Vargas-Parra, Gardenia, Varon, Raymonda, Vega, Ana, Velasco, Angela, Vesper, Anne-Sophie, Viel, Alessandra, Vreeswijk, Maaike P. G., Wagner, Sebastian A., Waha, Anke, Walker, Logan C., Walters, Rhiannon J., Wang-Gohrke, Shan, Weber, Bernhard H. F., Weichert, Wilko, Wieland, Kerstin, Wiesmueller, Lisa, Witzel, Isabell, Woeckel, Achim, Woodward, Emma R., Zachariae, Silke, Zampiga, Valentina, Zeder-Goss, Christine, Lazaro, Conxi, De Nicolo, Arcangela, Radice, Paolo, Engel, Christoph, Schmutzler, Rita K., Goldgar, David E., Spurdle, Amanda B., Parsons, Michael T., Tudini, Emma, Li, Hongyan, Hahnen, Eric, Wappenschmidt, Barbara, Feliubadalo, Lidia, Aalfs, Cora M., Agata, Simona, Aittomaki, Kristiina, Alducci, Elisa, Concepcion Alonso-Cerezo, Maria, Arnold, Norbert, Auber, Bernd, Austin, Rachel, Azzollini, Jacopo, Balmana, Judith, Barbieri, Elena, Bartram, Claus R., Blanco, Ana, Bluemcke, Britta, Bonache, Sandra, Bonanni, Bernardo, Borg, Ake, Bortesi, Beatrice, Brunet, Joan, Bruzzone, Carla, Bucksch, Karolin, Cagnoli, Giulia, Caldes, Trinidad, Caliebe, Almuth, Caligo, Maria A., Calvello, Mariarosaria, Capone, Gabriele L., Caputo, Sandrine M., Carnevali, Ileana, Carrasco, Estela, Caux-Moncoutier, Virginie, Cavalli, Pietro, Cini, Giulia, Clarke, Edward M., Concolino, Paola, Cops, Elisa J., Cortesi, Laura, Couch, Fergus J., Darder, Esther, de la Hoya, Miguel, Dean, Michael, Debatin, Irmgard, Del Valle, Jesus, Delnatte, Capucine, Derive, Nicolas, Diez, Orland, Ditsch, Nina, Domchek, Susan M., Dutrannoy, Veronique, Eccles, Diana M., Ehrencrona, Hans, Enders, Ute, Evans, D. Gareth, Farra, Chantal, Faust, Ulrike, Felbor, Ute, Feroce, Irene, Fine, Miriam, Foulkes, William D., Galvao, Henrique Cr, Gambino, Gaetana, Gehrig, Andrea, Gensini, Francesca, Gerdes, Anne-Marie, Germani, Aldo, Giesecke, Jutta, Gismondi, Viviana, Gomez, Carolina, Garcia, Encarna B. Gomez, Gonzalez, Sara, Grau, Elia, Grill, Sabine, Gross, Eva, Guerrieri-Gonzaga, Aliana, Guillaud-Bataille, Marine, Gutierrez-Enriquez, Sara, Haaf, Thomas, Hackmann, Karl, Hansen, Thomas Vo, Harris, Marion, Hauke, Jan, Heinrich, Tilman, Hellebrand, Heide, Herold, Karen N., Honisch, Ellen, Horvath, Judit, Houdayer, Claude, Huebbel, Verena, Iglesias, Silvia, Izquierdo, Angel, James, Paul A., Janssen, Linda Am, Jeschke, Udo, Kaulfuss, Silke, Keupp, Katharina, Kiechle, Marion, Koelbl, Alexandra, Krieger, Sophie, Kruse, Torben A., Kvist, Anders, Lalloo, Fiona, Larsen, Mirjam, Lattimore, Vanessa L., Lautrup, Charlotte, Ledig, Susanne, Leinert, Elena, Lewis, Alexandra L., Lim, Joanna, Loeffler, Markus, Lopez-Fernandez, Adria, Lucci-Cordisco, Emanuela, Maass, Nicolai, Manoukian, Siranoush, Marabelli, Monica, Matricardi, Laura, Meindl, Alfons, Michelli, Rodrigo D., Moghadasi, Setareh, Moles-Fernandez, Alejandro, Montagna, Marco, Montalban, Gemma, Monteiro, Alvaro N., Montes, Eva, Mori, Luigi, Moserle, Lidia, Mueller, Clemens R., Mundhenke, Christoph, Naldi, Nadia, Nathanson, Katherine L., Navarro, Matilde, Nevanlinna, Heli, Nichols, Cassandra B., Niederacher, Dieter, Nielsen, Henriette R., Ong, Kai-ren, Pachter, Nicholas, Palmero, Edenir, I, Papi, Laura, Pedersen, Inge Sokilde, Peissel, Bernard, Perez-Segura, Pedro, Pfeifer, Katharina, Pineda, Marta, Pohl-Rescigno, Esther, Poplawski, Nicola K., Porfirio, Berardino, Quante, Anne S., Ramser, Juliane, Reis, Rui M., Revillion, Francoise, Rhiem, Kerstin, Riboli, Barbara, Ritter, Julia, Rivera, Daniela, Rofes, Paula, Rump, Andreas, Salinas, Monica, Sanchez de Abajo, Ana Maria, Schmidt, Gunnar, Schoenwiese, Ulrike, Seggewiss, Jochen, Solanes, Ares, Steinemann, Doris, Stiller, Mathias, Stoppa-Lyonnet, Dominique, Sullivan, Kelly J., Susman, Rachel, Sutter, Christian, Tavtigian, Sean, V, Teo, Soo H., Teule, Alex, Thomassen, Mads, Tibiletti, Maria Grazia, Tischkowitz, Marc, Tognazzo, Silvia, Toland, Amanda E., Tornero, Eva, Torngren, Therese, Torres-Esquius, Sara, Toss, Angela, Trainer, Alison H., Tucker, Katherine M., van Asperen, Christi J., van Mackelenbergh, Marion T., Varesco, Liliana, Vargas-Parra, Gardenia, Varon, Raymonda, Vega, Ana, Velasco, Angela, Vesper, Anne-Sophie, Viel, Alessandra, Vreeswijk, Maaike P. G., Wagner, Sebastian A., Waha, Anke, Walker, Logan C., Walters, Rhiannon J., Wang-Gohrke, Shan, Weber, Bernhard H. F., Weichert, Wilko, Wieland, Kerstin, Wiesmueller, Lisa, Witzel, Isabell, Woeckel, Achim, Woodward, Emma R., Zachariae, Silke, Zampiga, Valentina, Zeder-Goss, Christine, Lazaro, Conxi, De Nicolo, Arcangela, Radice, Paolo, Engel, Christoph, Schmutzler, Rita K., Goldgar, David E., and Spurdle, Amanda B.
- Abstract
The multifactorial likelihood analysis method has demonstrated utility for quantitative assessment of variant pathogenicity for multiple cancer syndrome genes. Independent data types currently incorporated in the model for assessing BRCA1 and BRCA2 variants include clinically calibrated prior probability of pathogenicity based on variant location and bioinformatic prediction of variant effect, co-segregation, family cancer history profile, co-occurrence with a pathogenic variant in the same gene, breast tumor pathology, and case-control information. Research and clinical data for multifactorial likelihood analysis were collated for 1,395 BRCA1/2 predominantly intronic and missense variants, enabling classification based on posterior probability of pathogenicity for 734 variants: 447 variants were classified as (likely) benign, and 94 as (likely) pathogenic; and 248 classifications were new or considerably altered relative to ClinVar submissions. Classifications were compared with information not yet included in the likelihood model, and evidence strengths aligned to those recommended for ACMG/AMP classification codes. Altered mRNA splicing or function relative to known nonpathogenic variant controls were moderately to strongly predictive of variant pathogenicity. Variant absence in population datasets provided supporting evidence for variant pathogenicity. These findings have direct relevance for BRCA1 and BRCA2 variant evaluation, and justify the need for gene-specific calibration of evidence types used for variant classification.
- Published
- 2019
23. Large scale multifactorial likelihood quantitative analysis of BRCA1 and BRCA2 variants: An ENIGMA resource to support clinical variant classification
- Author
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Parsons, MT, Tudini, E, Li, H, Hahnen, E, Wappenschmidt, B, Feliubadalo, L, Aalfs, CM, Agata, S, Aittomaki, K, Alducci, E, Concepcion Alonso-Cerezo, M, Arnold, N, Auber, B, Austin, R, Azzollini, J, Balmana, J, Barbieri, E, Bartram, CR, Blanco, A, Bluemcke, B, Bonache, S, Bonanni, B, Borg, A, Bortesi, B, Brunet, J, Bruzzone, C, Bucksch, K, Cagnoli, G, Caldes, T, Caliebe, A, Caligo, MA, Calvello, M, Capone, GL, Caputo, SM, Carnevali, I, Carrasco, E, Caux-Moncoutier, V, Cavalli, P, Cini, G, Clarke, EM, Concolino, P, Cops, EJ, Cortesi, L, Couch, FJ, Darder, E, de la Hoya, M, Dean, M, Debatin, I, Del Valle, J, Delnatte, C, Derive, N, Diez, O, Ditsch, N, Domchek, SM, Dutrannoy, V, Eccles, DM, Ehrencrona, H, Enders, U, Evans, DG, Farra, C, Faust, U, Felbor, U, Feroce, I, Fine, M, Foulkes, WD, Galvao, HC, Gambino, G, Gehrig, A, Gensini, F, Gerdes, A-M, Germani, A, Giesecke, J, Gismondi, V, Gomez, C, Garcia, EBG, Gonzalez, S, Grau, E, Grill, S, Gross, E, Guerrieri-Gonzaga, A, Guillaud-Bataille, M, Gutierrez-Enriquez, S, Haaf, T, Hackmann, K, Hansen, TV, Harris, M, Hauke, J, Heinrich, T, Hellebrand, H, Herold, KN, Honisch, E, Horvath, J, Houdayer, C, Huebbel, V, Iglesias, S, Izquierdo, A, James, PA, Janssen, LA, Jeschke, U, Kaulfuss, S, Keupp, K, Kiechle, M, Koelbl, A, Krieger, S, Kruse, TA, Kvist, A, Lalloo, F, Larsen, M, Lattimore, VL, Lautrup, C, Ledig, S, Leinert, E, Lewis, AL, Lim, J, Loeffler, M, Lopez-Fernandez, A, Lucci-Cordisco, E, Maass, N, Manoukian, S, Marabelli, M, Matricardi, L, Meindl, A, Michelli, RD, Moghadasi, S, Moles-Fernandez, A, Montagna, M, Montalban, G, Monteiro, AN, Montes, E, Mori, L, Moserle, L, Mueller, CR, Mundhenke, C, Naldi, N, Nathanson, KL, Navarro, M, Nevanlinna, H, Nichols, CB, Niederacher, D, Nielsen, HR, Ong, K-R, Pachter, N, Palmero, E, Papi, L, Pedersen, IS, Peissel, B, Perez-Segura, P, Pfeifer, K, Pineda, M, Pohl-Rescigno, E, Poplawski, NK, Porfirio, B, Quante, AS, Ramser, J, Reis, RM, Revillion, F, Rhiem, K, Riboli, B, Ritter, J, Rivera, D, Rofes, P, Rump, A, Salinas, M, Sanchez de Abajo, AM, Schmidt, G, Schoenwiese, U, Seggewiss, J, Solanes, A, Steinemann, D, Stiller, M, Stoppa-Lyonnet, D, Sullivan, KJ, Susman, R, Sutter, C, Tavtigian, S, Teo, SH, Teule, A, Thomassen, M, Tibiletti, MG, Tischkowitz, M, Tognazzo, S, Toland, AE, Tornero, E, Torngren, T, Torres-Esquius, S, Toss, A, Trainer, AH, Tucker, KM, van Asperen, CJ, van Mackelenbergh, MT, Varesco, L, Vargas-Parra, G, Varon, R, Vega, A, Velasco, A, Vesper, A-S, Viel, A, Vreeswijk, MPG, Wagner, SA, Waha, A, Walker, LC, Walters, RJ, Wang-Gohrke, S, Weber, BHF, Weichert, W, Wieland, K, Wiesmueller, L, Witzel, I, Woeckel, A, Woodward, ER, Zachariae, S, Zampiga, V, Zeder-Goss, C, Lazaro, C, De Nicolo, A, Radice, P, Engel, C, Schmutzler, RK, Goldgar, DE, Spurdle, AB, Parsons, MT, Tudini, E, Li, H, Hahnen, E, Wappenschmidt, B, Feliubadalo, L, Aalfs, CM, Agata, S, Aittomaki, K, Alducci, E, Concepcion Alonso-Cerezo, M, Arnold, N, Auber, B, Austin, R, Azzollini, J, Balmana, J, Barbieri, E, Bartram, CR, Blanco, A, Bluemcke, B, Bonache, S, Bonanni, B, Borg, A, Bortesi, B, Brunet, J, Bruzzone, C, Bucksch, K, Cagnoli, G, Caldes, T, Caliebe, A, Caligo, MA, Calvello, M, Capone, GL, Caputo, SM, Carnevali, I, Carrasco, E, Caux-Moncoutier, V, Cavalli, P, Cini, G, Clarke, EM, Concolino, P, Cops, EJ, Cortesi, L, Couch, FJ, Darder, E, de la Hoya, M, Dean, M, Debatin, I, Del Valle, J, Delnatte, C, Derive, N, Diez, O, Ditsch, N, Domchek, SM, Dutrannoy, V, Eccles, DM, Ehrencrona, H, Enders, U, Evans, DG, Farra, C, Faust, U, Felbor, U, Feroce, I, Fine, M, Foulkes, WD, Galvao, HC, Gambino, G, Gehrig, A, Gensini, F, Gerdes, A-M, Germani, A, Giesecke, J, Gismondi, V, Gomez, C, Garcia, EBG, Gonzalez, S, Grau, E, Grill, S, Gross, E, Guerrieri-Gonzaga, A, Guillaud-Bataille, M, Gutierrez-Enriquez, S, Haaf, T, Hackmann, K, Hansen, TV, Harris, M, Hauke, J, Heinrich, T, Hellebrand, H, Herold, KN, Honisch, E, Horvath, J, Houdayer, C, Huebbel, V, Iglesias, S, Izquierdo, A, James, PA, Janssen, LA, Jeschke, U, Kaulfuss, S, Keupp, K, Kiechle, M, Koelbl, A, Krieger, S, Kruse, TA, Kvist, A, Lalloo, F, Larsen, M, Lattimore, VL, Lautrup, C, Ledig, S, Leinert, E, Lewis, AL, Lim, J, Loeffler, M, Lopez-Fernandez, A, Lucci-Cordisco, E, Maass, N, Manoukian, S, Marabelli, M, Matricardi, L, Meindl, A, Michelli, RD, Moghadasi, S, Moles-Fernandez, A, Montagna, M, Montalban, G, Monteiro, AN, Montes, E, Mori, L, Moserle, L, Mueller, CR, Mundhenke, C, Naldi, N, Nathanson, KL, Navarro, M, Nevanlinna, H, Nichols, CB, Niederacher, D, Nielsen, HR, Ong, K-R, Pachter, N, Palmero, E, Papi, L, Pedersen, IS, Peissel, B, Perez-Segura, P, Pfeifer, K, Pineda, M, Pohl-Rescigno, E, Poplawski, NK, Porfirio, B, Quante, AS, Ramser, J, Reis, RM, Revillion, F, Rhiem, K, Riboli, B, Ritter, J, Rivera, D, Rofes, P, Rump, A, Salinas, M, Sanchez de Abajo, AM, Schmidt, G, Schoenwiese, U, Seggewiss, J, Solanes, A, Steinemann, D, Stiller, M, Stoppa-Lyonnet, D, Sullivan, KJ, Susman, R, Sutter, C, Tavtigian, S, Teo, SH, Teule, A, Thomassen, M, Tibiletti, MG, Tischkowitz, M, Tognazzo, S, Toland, AE, Tornero, E, Torngren, T, Torres-Esquius, S, Toss, A, Trainer, AH, Tucker, KM, van Asperen, CJ, van Mackelenbergh, MT, Varesco, L, Vargas-Parra, G, Varon, R, Vega, A, Velasco, A, Vesper, A-S, Viel, A, Vreeswijk, MPG, Wagner, SA, Waha, A, Walker, LC, Walters, RJ, Wang-Gohrke, S, Weber, BHF, Weichert, W, Wieland, K, Wiesmueller, L, Witzel, I, Woeckel, A, Woodward, ER, Zachariae, S, Zampiga, V, Zeder-Goss, C, Lazaro, C, De Nicolo, A, Radice, P, Engel, C, Schmutzler, RK, Goldgar, DE, and Spurdle, AB
- Abstract
The multifactorial likelihood analysis method has demonstrated utility for quantitative assessment of variant pathogenicity for multiple cancer syndrome genes. Independent data types currently incorporated in the model for assessing BRCA1 and BRCA2 variants include clinically calibrated prior probability of pathogenicity based on variant location and bioinformatic prediction of variant effect, co-segregation, family cancer history profile, co-occurrence with a pathogenic variant in the same gene, breast tumor pathology, and case-control information. Research and clinical data for multifactorial likelihood analysis were collated for 1,395 BRCA1/2 predominantly intronic and missense variants, enabling classification based on posterior probability of pathogenicity for 734 variants: 447 variants were classified as (likely) benign, and 94 as (likely) pathogenic; and 248 classifications were new or considerably altered relative to ClinVar submissions. Classifications were compared with information not yet included in the likelihood model, and evidence strengths aligned to those recommended for ACMG/AMP classification codes. Altered mRNA splicing or function relative to known nonpathogenic variant controls were moderately to strongly predictive of variant pathogenicity. Variant absence in population datasets provided supporting evidence for variant pathogenicity. These findings have direct relevance for BRCA1 and BRCA2 variant evaluation, and justify the need for gene-specific calibration of evidence types used for variant classification.
- Published
- 2019
24. Frequent translocations of 11q13.2 and 19p13.2 in ovarian cancer
- Author
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Wiebke Onkes, Francesca Micci, Liang Wang, Felix Hilpert, Nicolai Maass, Jörg Weimer, Antonia Wenners, Amke Caliebe, Regina Fredrik, and Norbert Arnold
- Subjects
Genetics ,Cancer Research ,endocrine system diseases ,medicine.diagnostic_test ,Breakpoint ,Chromosome ,Chromosomal translocation ,Biology ,medicine.disease ,Fusion protein ,Fusion gene ,medicine ,Cancer research ,Interphase ,Ovarian cancer ,Fluorescence in situ hybridization - Abstract
Aberrations of chromosome arm 19p in ovarian cancer were first described decades ago and have been confirmed in recent publications, which have focused on chromosome 11 as a translocation partner. Recently, genetic analysis of the ovarian cancer cell line SKOV3 revealed a rearrangement described as der(19)t(11;19)(q13.2;p13.2), which lead to a fusion protein containing parts of HOOK2 and frame shifted ACTN3 that had unknown functionality. To evaluate the frequency of these breakpoints, we used fluorescence in situ hybridization (FISH) probes flanking these genes for interphase analysis of ovarian cancer cells. We analyzed 49 primary cell cultures of ovarian cancers using FISH probes next to these breakpoints on chromosomes 11 and 19 defined in SKOV3. Co-localizations of the signals in interphase nuclei were considered to be positive fusions when the frequency was over the experimentally calculated cutoff of 24.3% (mean average value for normal ovary cells plus three times the standard deviation). Fusions between 11q13.2 and 19p13.2 were confirmed in 22 (45%) primary cell cultures of ovarian cancers. However, by PCR, the fusion originally described in SKOV3 was not detected in any of the primary cell cultures. Our results confirm other reports and show that these regions are very frequently involved in chromosomal rearrangements in ovarian cancer. Furthermore, they reveal a significant correlation (P = 0.023) of co-localized signals of 11q13.2 and 19p13.2 with low and intermediate grades in ovarian cancer.
- Published
- 2014
- Full Text
- View/download PDF
25. Improvements of MOVPE grown (11$ \bar 2 $2) oriented GaN on pre‐structured sapphire substrates using a SiN x interlayer and HVPE overgrowth
- Author
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Tobias Meisch, Ferdinand Scholz, Sebastian Bauer, Jeffrey Helbing, Dominik Heinz, Martin Klein, Marian Caliebe, Dominik Beck, Benjamin Neuschl, and Klaus Thonke
- Subjects
Crystal ,Materials science ,business.industry ,Bar (music) ,Sapphire ,Optoelectronics ,Metalorganic vapour phase epitaxy ,Condensed Matter Physics ,business - Abstract
In this article two methods for improvements of (112) oriented semipolar GaN grown by MOVPE on prestructured sapphire substrates are investigated. The integration of a SiNx interlayer helps to obtain a better crystal quality. Also the overgrowth of the MOVPE samples by HVPE is a way to obtain a smoother GaN surface. A high incorporation of oxygen on (11-22) oriented GaN compared to (0001) oriented GaN grown by HVPE was observed. (© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)
- Published
- 2014
- Full Text
- View/download PDF
26. Mutational spectrum in a worldwide study of 29,700 families with BRCA1 or BRCA2 mutations
- Author
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Rebbeck, Timothy R., Friebel, Tara M., Friedman, Eitan, Hamann, Ute, Huo, Dezheng, Kwong, Ava, Olah, Edith, Olopade, Olufunmilayo I., Solano, Angela R., Teo, Soo-Hwang, Thomassen, Mads, Weitzel, Jeffrey N., Chan, T. L., Couch, Fergus J., Goldgar, David E., Kruse, Torben A., Palmero, Edenir Inez, Park, Sue Kyung, Torres, Diana, van Rensburg, Elizabeth J., McGuffog, Lesley, Parsons, Michael T., Leslie, Goska, Aalfs, Cora M., Abugattas, Julio, Adlard, Julian, Agata, Simona, Aittomaki, Kristiina, Andrews, Lesley, Andrulis, Irene L., Arason, Adalgeir, Arnold, Norbert, Arun, Banu K., Asseryanis, Ella, Auerbach, Leo, Azzollini, Jacopo, Balmana, Judith, Barile, Monica, Barkardottir, Rosa B., Barrowdale, Daniel, Benitez, Javier, Berger, Andreas, Berger, Raanan, Blanco, Amie M., Blazer, Kathleen R., Blok, Marinus J., Bonadona, Valerie, Bonanni, Bernardo, Bradbury, Angela R., Brewer, Carole, Buecher, Bruno, Buys, Saundra S., Caldes, Trinidad, Caliebe, Almuth, Caligo, Maria A., Campbell, Ian, Caputo, Sandrine M., Chiquette, Jocelyne, Chung, Wendy K., Claes, Kathleen B. M., Collee, J. Margriet, Cook, Jackie, Davidson, Rosemarie, de la Hoya, Miguel, De Leeneer, Kim, de Pauw, Antoine, Delnatte, Capucine, Diez, Orland, Ding, Yuan Chun, Ditsch, Nina, Domchek, SusanM., Dorfling, Cecilia M., Velazquez, Carolina, Dworniczak, Bernd, Eason, Jacqueline, Easton, Douglas F., Eeles, Ros, Ehrencrona, Hans, Ejlertsen, Bent, Engel, Christoph, Engert, Stefanie, Evans, D. Gareth, Faivre, Laurence, Feliubadalo, Lidia, Ferrer, Sandra Fert, Foretova, Lenka, Fowler, Jeffrey, Frost, Debra, Galvao, Henrique C. R., Ganz, Patricia A., Garber, Judy, Gauthier-Villars, Marion, Gehrig, Andrea, Gerdes, Anne-Marie, Gesta, Paul, Giannini, Giuseppe, Giraud, Sophie, Glendon, Gord, Godwin, Andrew K., Greene, Mark H., Gronwald, Jacek, Gutierrez-Barrera, Angelica, Hahnen, Eric, Hauke, Jan, Henderson, Alex, Hentschel, Julia, Hogervorst, Frans B. L., Honisch, Ellen, Imyanitov, Evgeny N., Isaacs, Claudine, Izatt, Louise, Izquierdo, Angel, Jakubowska, Anna, James, Paul, Janavicius, Ramunas, Jensen, Uffe Birk, John, Esther M., Vijai, Joseph, Kaczmarek, Katarzyna, Karlan, Beth Y., Kast, Karin, Kim, Sung-Won, Konstantopoulou, Irene, Korach, Jacob, Laitman, Yael, Lasa, Adriana, Lasset, Christine, Lazaro, Conxi, Lee, Annette, Lee, Min Hyuk, Lester, Jenny, Lesueur, Fabienne, Liljegren, Annelie, Lindor, Noralane M., Longy, Michel, Loud, Jennifer T., Lu, Karen H., Lubinski, Jan, Machackova, Eva, Manoukian, Siranoush, Mari, Veronique, Martinez-Bouzas, Cristina, Matrai, Zoltan, Mebirouk, Noura, Meijers-Heijboer, Hanne E. J., Meindl, Alfons, Mensenkamp, Arjen R., Mickys, Ugnius, Miller, Austin, Montagna, Marco, Moysich, Kirsten B., Mulligan, Anna Marie, Musinsky, Jacob, Neuhausen, Susan L., Nevanlinna, Heli, Ngeow, Joanne, Nguyen, Huu Phuc, Niederacher, Dieter, Nielsen, Henriette Roed, Nielsen, Finn Cilius, Nussbaum, Robert L., Offit, Kenneth, Ofverholm, Anna, Ong, Kai-ren, Osorio, Ana, Papi, Laura, Papp, Janos, Pasini, Barbara, Pedersen, Inge Sokilde, Peixoto, Ana, Peruga, Nina, Peterlongo, Paolo, Pohl, Esther, Pradhan, Nisha, Prajzendanc, Karolina, Prieur, Fabienne, Pujol, Pascal, Radice, Paolo, Ramus, Susan J., Rantala, Johanna, Rashid, Muhammad Usman, Rhiem, Kerstin, Robson, Mark, Rodriguez, Gustavo C., Rogers, Mark T., Rudaitis, Vilius, Schmidt, Ane Y., Schmutzler, Rita Katharina, Senter, Leigha, Shah, Payal D., Sharma, Priyanka, Side, Lucy E., Simard, Jacques, Singer, Christian F., Skytte, Anne-Bine, Slavin, Thomas P., Snape, Katie, Sobol, Hagay, Southey, Melissa, Steele, Linda, Steinemann, Doris, Sukiennicki, Grzegorz, Sutter, Christian, Szabo, Csilla I., Tan, Yen Y., Teixeira, Manuel R., Terry, Mary Beth, Teule, Alex, Thomas, Abigail, Thull, Darcy L., Tischkowitz, Marc, Tognazzo, Silvia, Toland, Amanda Ewart, Topka, Sabine, Trainer, Alison H., Tung, Nadine, van Asperen, Christi J., van der Hout, Annemieke H., van der Kolk, Lizet E., van der Luijt, Rob B., Van Heetvelde, Mattias, Varesco, Liliana, Varon-Mateeva, Raymonda, Vega, Ana, Villarreal-Garza, Cynthia, von Wachenfeldt, Anna, Walker, Lisa, Wang-Gohrke, Shan, Wappenschmidt, Barbara, Weber, Bernhard H. F., Yannoukakos, Drakoulis, Yoon, Sook-Yee, Zanzottera, Cristina, Zidan, Jamal, Zorn, Kristin K., Selkirk, Christina G. Hutten, Hulick, Peter J., Chenevix-Trench, Georgia, Spurdle, Amanda B., Antoniou, Antonis C., Nathanson, Katherine L., Rebbeck, Timothy R., Friebel, Tara M., Friedman, Eitan, Hamann, Ute, Huo, Dezheng, Kwong, Ava, Olah, Edith, Olopade, Olufunmilayo I., Solano, Angela R., Teo, Soo-Hwang, Thomassen, Mads, Weitzel, Jeffrey N., Chan, T. L., Couch, Fergus J., Goldgar, David E., Kruse, Torben A., Palmero, Edenir Inez, Park, Sue Kyung, Torres, Diana, van Rensburg, Elizabeth J., McGuffog, Lesley, Parsons, Michael T., Leslie, Goska, Aalfs, Cora M., Abugattas, Julio, Adlard, Julian, Agata, Simona, Aittomaki, Kristiina, Andrews, Lesley, Andrulis, Irene L., Arason, Adalgeir, Arnold, Norbert, Arun, Banu K., Asseryanis, Ella, Auerbach, Leo, Azzollini, Jacopo, Balmana, Judith, Barile, Monica, Barkardottir, Rosa B., Barrowdale, Daniel, Benitez, Javier, Berger, Andreas, Berger, Raanan, Blanco, Amie M., Blazer, Kathleen R., Blok, Marinus J., Bonadona, Valerie, Bonanni, Bernardo, Bradbury, Angela R., Brewer, Carole, Buecher, Bruno, Buys, Saundra S., Caldes, Trinidad, Caliebe, Almuth, Caligo, Maria A., Campbell, Ian, Caputo, Sandrine M., Chiquette, Jocelyne, Chung, Wendy K., Claes, Kathleen B. M., Collee, J. Margriet, Cook, Jackie, Davidson, Rosemarie, de la Hoya, Miguel, De Leeneer, Kim, de Pauw, Antoine, Delnatte, Capucine, Diez, Orland, Ding, Yuan Chun, Ditsch, Nina, Domchek, SusanM., Dorfling, Cecilia M., Velazquez, Carolina, Dworniczak, Bernd, Eason, Jacqueline, Easton, Douglas F., Eeles, Ros, Ehrencrona, Hans, Ejlertsen, Bent, Engel, Christoph, Engert, Stefanie, Evans, D. Gareth, Faivre, Laurence, Feliubadalo, Lidia, Ferrer, Sandra Fert, Foretova, Lenka, Fowler, Jeffrey, Frost, Debra, Galvao, Henrique C. R., Ganz, Patricia A., Garber, Judy, Gauthier-Villars, Marion, Gehrig, Andrea, Gerdes, Anne-Marie, Gesta, Paul, Giannini, Giuseppe, Giraud, Sophie, Glendon, Gord, Godwin, Andrew K., Greene, Mark H., Gronwald, Jacek, Gutierrez-Barrera, Angelica, Hahnen, Eric, Hauke, Jan, Henderson, Alex, Hentschel, Julia, Hogervorst, Frans B. L., Honisch, Ellen, Imyanitov, Evgeny N., Isaacs, Claudine, Izatt, Louise, Izquierdo, Angel, Jakubowska, Anna, James, Paul, Janavicius, Ramunas, Jensen, Uffe Birk, John, Esther M., Vijai, Joseph, Kaczmarek, Katarzyna, Karlan, Beth Y., Kast, Karin, Kim, Sung-Won, Konstantopoulou, Irene, Korach, Jacob, Laitman, Yael, Lasa, Adriana, Lasset, Christine, Lazaro, Conxi, Lee, Annette, Lee, Min Hyuk, Lester, Jenny, Lesueur, Fabienne, Liljegren, Annelie, Lindor, Noralane M., Longy, Michel, Loud, Jennifer T., Lu, Karen H., Lubinski, Jan, Machackova, Eva, Manoukian, Siranoush, Mari, Veronique, Martinez-Bouzas, Cristina, Matrai, Zoltan, Mebirouk, Noura, Meijers-Heijboer, Hanne E. J., Meindl, Alfons, Mensenkamp, Arjen R., Mickys, Ugnius, Miller, Austin, Montagna, Marco, Moysich, Kirsten B., Mulligan, Anna Marie, Musinsky, Jacob, Neuhausen, Susan L., Nevanlinna, Heli, Ngeow, Joanne, Nguyen, Huu Phuc, Niederacher, Dieter, Nielsen, Henriette Roed, Nielsen, Finn Cilius, Nussbaum, Robert L., Offit, Kenneth, Ofverholm, Anna, Ong, Kai-ren, Osorio, Ana, Papi, Laura, Papp, Janos, Pasini, Barbara, Pedersen, Inge Sokilde, Peixoto, Ana, Peruga, Nina, Peterlongo, Paolo, Pohl, Esther, Pradhan, Nisha, Prajzendanc, Karolina, Prieur, Fabienne, Pujol, Pascal, Radice, Paolo, Ramus, Susan J., Rantala, Johanna, Rashid, Muhammad Usman, Rhiem, Kerstin, Robson, Mark, Rodriguez, Gustavo C., Rogers, Mark T., Rudaitis, Vilius, Schmidt, Ane Y., Schmutzler, Rita Katharina, Senter, Leigha, Shah, Payal D., Sharma, Priyanka, Side, Lucy E., Simard, Jacques, Singer, Christian F., Skytte, Anne-Bine, Slavin, Thomas P., Snape, Katie, Sobol, Hagay, Southey, Melissa, Steele, Linda, Steinemann, Doris, Sukiennicki, Grzegorz, Sutter, Christian, Szabo, Csilla I., Tan, Yen Y., Teixeira, Manuel R., Terry, Mary Beth, Teule, Alex, Thomas, Abigail, Thull, Darcy L., Tischkowitz, Marc, Tognazzo, Silvia, Toland, Amanda Ewart, Topka, Sabine, Trainer, Alison H., Tung, Nadine, van Asperen, Christi J., van der Hout, Annemieke H., van der Kolk, Lizet E., van der Luijt, Rob B., Van Heetvelde, Mattias, Varesco, Liliana, Varon-Mateeva, Raymonda, Vega, Ana, Villarreal-Garza, Cynthia, von Wachenfeldt, Anna, Walker, Lisa, Wang-Gohrke, Shan, Wappenschmidt, Barbara, Weber, Bernhard H. F., Yannoukakos, Drakoulis, Yoon, Sook-Yee, Zanzottera, Cristina, Zidan, Jamal, Zorn, Kristin K., Selkirk, Christina G. Hutten, Hulick, Peter J., Chenevix-Trench, Georgia, Spurdle, Amanda B., Antoniou, Antonis C., and Nathanson, Katherine L.
- Abstract
The prevalence and spectrum of germline mutations in BRCA1 and BRCA2 have been reported in single populations, with the majority of reports focused on White in Europe and North America. The Consortium of Investigators of Modifiers of BRCA1/2 (CIMBA) has assembled data on 18,435 families with BRCA1 mutations and 11,351 families with BRCA2 mutations ascertained from 69 centers in 49 countries on six continents. This study comprehensively describes the characteristics of the 1,650 unique BRCA1 and 1,731 unique BRCA2 deleterious (disease-associated) mutations identified in the CIMBA database. We observed substantial variation in mutation type and frequency by geographical region and race/ethnicity. In addition to known founder mutations, mutations of relatively high frequency were identified in specific racial/ethnic or geographic groups that may reflect founder mutations and which could be used in targeted (panel) first pass genotyping for specific populations. Knowledge of the population-specific mutational spectrum in BRCA1 and BRCA2 could inform efficient strategies for genetic testing and may justify a more broad-based oncogenetic testing in some populations.
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- 2018
27. Photocoagulation in rabbits: Optical coherence tomographic lesion classification, wound healing reaction, and retinal temperatures
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Mark Saeger, Stefan Koinzer, Amke Caliebe, Ralf Brinkmann, Johann Roider, Alexander Baade, Kerstin Schlott, and Carola Hesse
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medicine.medical_specialty ,Pathology ,genetic structures ,business.industry ,Histology ,Retinal ,Dermatology ,Cw laser ,eye diseases ,Lesion ,chemistry.chemical_compound ,Animal model ,chemistry ,Ophthalmology ,medicine ,Surgery ,sense organs ,medicine.symptom ,Wound healing ,business ,Exposure duration ,Retinal photocoagulation - Abstract
Background and Objective The rabbit is the most common animal model to study retinal photocoagulation lesions. We present a classification of retinal lesions from rabbits, that is based on optical coherence tomographic (OCT) findings, temperature data, and OCT-follow-up data over 3 months. Materials and Methods Four hundred eighty-six photocoagulation lesions (modified Zeiss Visulas® 532 nm CW laser, lesion diameter 133 µm, exposure duration 200 milliseconds or variable, power variable) were analyzed from six eyes of three chinchilla gray rabbits. During the irradiation of each lesion, we used an optoacoustics-based method to measure the retinal temperature profile. Two hours, 1 week, 1 month, and 3 months after the treatment, we obtained fundus color and OCT (Spectralis®) images of each lesion. We classified the lesions according to their OCT morphology and correlated the findings to ophthalmoscopic and OCT lesion diameters, and temperatures. Results Besides an undetectable lesion class 0, we discerned subthreshold lesions that were invisible on the fundus but detectable in OCT (classes 1 and 2), very mild lesions that were partly visible on the fundus (class 3), and 3 classes of suprathreshold lesions. OCT greatest linear diameters (GLDs) were larger than ophthalmoscopic lesion diameters, both increased for increasing classes, and GLDs decreased over 3 months within each class. Mean peak end temperatures for 200 milliseconds lesions ranged from 61°C in class 2 to 80°C in class 6. Conclusion The seven step rabbit lesion classifier is distinct from a previously published human lesion classifier. Threshold lesions are generated at comparable temperatures in rabbits and humans, while more intense lesions are created at lower temperatures in rabbits. The OCT lesion classifier could replace routine histology in some studies, and the presented data may be used to estimate lesion end temperatures from OCT images. Lasers Surg. Med. 45:427–436, 2013. © 2013 Wiley Periodicals, Inc.
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- 2013
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28. Targeted methylation testing of a patient cohort broadens the epigenetic and clinical description of imprinting disorders
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Anna Lehmann, Emma Wakeling, I. Karen Temple, Emma L. Baple, Claire L. S. Turner, Lucy Harrison, Louise E. Docherty, Deborah J G Mackay, Almuth Caliebe, Abeer Al Sayegh, and Rebecca L. Poole
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Epigenomics ,Genetics ,Genetic heterogeneity ,Genetic Diseases, Inborn ,Epigenetics of autism ,DNA Methylation ,Biology ,medicine.disease ,Cohort Studies ,Genetic Heterogeneity ,Genomic Imprinting ,Phenotype ,Genetic Loci ,Angelman syndrome ,DNA methylation ,medicine ,Humans ,Genetic Testing ,Copy-number variation ,Epigenetics ,Imprinting (psychology) ,Genomic imprinting ,Genetics (clinical) - Abstract
Imprinting disorders are associated with mutations and epimutations affecting imprinted genes, that is those whose expression is restricted by parent of origin. Their diagnosis is challenging for two reasons: firstly, their clinical features, particularly prenatal and postnatal growth disturbance, are heterogeneous and partially overlapping; secondly, their underlying molecular defects include mutation, epimutation, copy number variation, and chromosomal errors, and can be further complicated by somatic mosaicism and multi-locus methylation defects. It is currently unclear to what extent the observed phenotypic heterogeneity reflects the underlying molecular pathophysiology; in particular, the molecular and clinical diversity of multilocus methylation defects remains uncertain. To address these issues we performed comprehensive methylation analysis of imprinted genes in a research cohort of 285 patients with clinical features of imprinting disorders, with or without a positive molecular diagnosis. 20 of 91 patients (22%) with diagnosed epimutations had methylation defects of additional imprinted loci, and the frequency of developmental delay and congenital anomalies was higher among these patients than those with isolated epimutations, indicating that hypomethylation of multiple imprinted loci is associated with increased diversity of clinical presentation. Among 194 patients with clinical features of an imprinting disorder but no molecular diagnosis, we found 15 (8%) with methylation anomalies, including missed and unexpected molecular diagnoses. These observations broaden the phenotypic and epigenetic definitions of imprinting disorders, and show the importance of comprehensive molecular testing for patient diagnosis and management.
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- 2013
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29. Toward defect-free semi-polar GaN templates on pre-structured sapphire
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Han, Yisong, Caliebe, Marian, Hage, Fredrik, Ramasse, Quentin, Pristovsek, Markus, Zhu, Tongtong, Scholz, Ferdinand, and Humphreys, Colin
- Abstract
The microstructure of semi-polar (11–22) GaN templates grown on pre-structured r-plane sapphire by MOVPE has been characterized by TEM. Cross-sectional observations indicate that defects are generated in three regions of the layers: threading dislocations at the inclined GaN/sapphire interface, basal plane stacking faults (BSFs) at the c−-wing, BSFs and threading dislocations at the coalescence between neighboring GaN stripes. An in situ SiN interlayer deposited at an early stage of the growth is shown to be effective in blocking the propagation of dislocations, which is mainly attributed to SiN formed on the c-plane rather than on the (11–22) plane. Si-doped marker layers have been used to study the evolution of the growth front before coalescence as a function of temperature. A high growth temperature is associated with the formation of highly faceted GaN stripes. Dislocations originally running along the c-direction are bent to the [11–20] direction driven by a progressing (11–22) facet. An efficient defect reduction is realized as a result of terminating these dislocations at voids partially defined by the (11–20) facet.
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- 2016
30. A comparison of the Nexfin®and transcardiopulmonary thermodilution to estimate cardiac output during coronary artery surgery
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Jochen Renner, Matthias Gruenewald, Ole Jacob Broch, Patrick Meybohm, Amke Caliebe, Johann Schottler, M. Malbrain, Markus Steinfath, and Berthold Bein
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medicine.medical_specialty ,Cardiac output ,business.industry ,Intensive care unit ,law.invention ,Cardiac surgery ,Anesthesiology and Pain Medicine ,Blood pressure ,medicine.anatomical_structure ,law ,Anesthesia ,Internal medicine ,Cuff ,Cardiopulmonary bypass ,Cardiology ,Medicine ,General anaesthesia ,business ,Artery - Abstract
The newly introduced Nexfin(®) device allows analysis of the blood pressure trace produced by a non-invasive finger cuff. We compared the cardiac output derived from the Nexfin and PiCCO, using transcardiopulmonary thermodilution, during cardiac surgery. Forty patients with preserved left ventricular function undergoing elective coronary artery bypass graft surgery were studied after induction of general anaesthesia and until discharge to the intensive care unit. There was a significant correlation between Nexfin and PiCCO before (r(2) = 0.81, p < 0.001) and after (r(2) = 0.56, p < 0.001) cardiopulmonary bypass. Bland-Altman analysis demonstrated the mean bias of Nexfin to be -0.1 (95% limits of agreement -0.6 to +0.5, percentage error 23%) and -0.1 (-0.8 to +0.6, 26%) l.min(-1).m(-2), before and after cardiopulmonary bypass, respectively. After a passive leg-raise was performed, there was also good correlation between the two methods, both before (r(2) = 0.72, p < 0.001) and after (r(2) = 0.76, p < 0.001) cardiopulmonary bypass. We conclude that the Nexfin is a reliable method of measuring cardiac output during and after cardiac surgery.
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- 2012
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31. Genotype-phenotype correlation in eight new patients with a deletion encompassing 2q31.1
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Mitter, Diana, Delle Chiaie, Barbara, Lüdecke, Hermann-Josef, Gillessen-Kaesbach, Gabriele, Bohring, Axel, Kohlhase, Jürgen, Caliebe, Almuth, Siebert, Reiner, Röpke, Albrecht, Ramos-Arroyo, Maria A., Nieva, Beatriz, Menten, Björn, Loeys, Bart, Mortier, Geert, Wieczorek, Dagmar, and Chiaie, Barbara Delle
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Adult ,Male ,Microcephaly ,Foot Deformities, Congenital ,Medizin ,Biology ,Craniosynostosis ,Pregnancy ,Genotype ,Genetics ,medicine ,Humans ,Syndactyly ,Child ,Genetic Association Studies ,Genetics (clinical) ,Comparative Genomic Hybridization ,Polydactyly ,Infant, Newborn ,Infant ,Chromosome Breakage ,medicine.disease ,Phenotype ,Radiography ,Child, Preschool ,Chromosomes, Human, Pair 2 ,Karyotyping ,Female ,Chromosome Deletion ,Chromosome breakage ,Hand Deformities, Congenital ,Comparative genomic hybridization - Abstract
Microdeletions of the 2q31.1 region are rare. We present the clinical and molecular findings of eight previously unreported patients with overlapping deletions in 2q31.1. The patients have a variable clinical phenotype and present with developmental delay (7/8), growth retardation (5/8), seizures (2/8) and a craniofacial dysmorphism consisting of microcephaly (4/8), short palpebral fissures (7/8), broad eyebrows with lateral flare (7/8), low-set ears with thickened helices and lobules (5/8), and micrognathia (6/8). Additional congenital anomalies were noted, including limb abnormalities (8/8), heart defects (3/8), genital anomalies (3/8), and craniosynostosis (1/8). Six of these microdeletions, ranging in size from 1.24 to 8.35 Mb, were identified by array CGH, one larger deletion (19.7 Mb) was detected by conventional karyotyping and further characterized by array CGH analysis. The smallest region of overlap in all eight patients spans at most 88 kb and includes only the WIPF1 gene. This gene codes for the WAS/WASL interacting protein family member 1. The patients described here do not present with clinical signs of the Wiskott-Aldrich syndrome and the deletion of this single gene does not allow explaining the phenotype in our patients. It is likely that the deletion of different but overlapping sets of genes from 2q31 is responsible for the clinical variability in these patients. To further dissect the complex phenotype associated with deletions in 2q31, additional patients with overlapping phenotypes should be examined with array CGH. This should help to link particular phenotypes to specific genes, and add to our understanding of the underlying developmental processes.
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- 2010
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32. Deletions in 16p13 including GRIN2A in patients with intellectual disability, various dysmorphic features, and seizure disorders of the rolandic region
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Sarah von Spiczak, Constanze Reutlinger, Holger Tönnies, Irina Stefanova, Sascha Vermeer, Andreas van Baalen, Barbara Gawelczyk, Reiner Siebert, Rolph Pfundt, Katrin Finsterwalder, Jürgen Sperner, Almuth Caliebe, Gabriele Gillessen-Kaesbach, Ingo Helbig, Jose Ignacio Martin Subero, Hiltrud Muhle, Rainer Boor, and Ulrich Stephani
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biology ,Status epilepticus ,Benign Rolandic Epilepsy ,medicine.disease ,nervous system diseases ,Rolandic epilepsy ,Developmental disorder ,Epilepsy ,Neurology ,Epilepsy syndromes ,Intellectual disability ,medicine ,biology.protein ,GRIN2A ,Neurology (clinical) ,medicine.symptom ,Psychology ,Neuroscience - Abstract
Seizure disorders of the rolandic region comprise a spectrum of different epilepsy syndromes ranging from benign rolandic epilepsy to more severe seizure disorders including atypical benign partial epilepsy/pseudo-Lennox syndrome,electrical status epilepticus during sleep, and Landau-Kleffner syndrome. Centrotemporal spikes are the unifying electroencephalographic hallmark of these benign focal epilepsies, indicating a pathophysiologic relationship between the various epilepsies arising from the rolandic region. The etiology of these epilepsies is elusive, but a genetic component is assumed given the heritability of the characteristic electrographic trait. Herein we report on three patients with intellectual disability, various dysmorphic features, and epilepsies involving the rolandic region, carrying previously undescribed deletions in 16p13. The only gene located in the critical region shared by all three patients is GRIN2A coding for the alpha-2 subunit of the neuronal N-methyl-D-aspartate(NMDA) receptor.
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- 2010
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33. Genetic counseling in Robertsonian translocations der(13;14): Frequencies of reproductive outcomes and infertility in 101 pedigrees
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Thomas Eggermann, Barbara Panasiuk, Klaus Zerres, Anna Jelska, Hartmut Engels, Anna Latos-Bielenska, Alina T. Midro, Lucjusz Jakubowski, Jacek Zaremba, Herdit M. Schüler, Gesa Schwanitz, Almut Caliebe, and Regine Schubert
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Infertility ,medicine.medical_specialty ,Genetic counseling ,Robertsonian translocation ,Genetic Counseling ,Prenatal diagnosis ,Fertilization in Vitro ,Biology ,medicine.disease_cause ,Translocation, Genetic ,Miscarriage ,Pregnancy ,Genetics ,medicine ,Humans ,Genetics (clinical) ,Chromosomes, Human, Pair 14 ,Chromosomes, Human, Pair 13 ,Obstetrics ,Pregnancy Outcome ,Stillbirth ,medicine.disease ,Pedigree ,Abortion, Spontaneous ,Karyotyping ,Female ,Live birth ,Trisomy - Abstract
Robertsonian translocations 13/14 are the most common chromosome rearrangements in humans. However, most studies aimed at determining risk figures are more than 20 years old. Their results are often contradictory regarding important topics in genetic counseling such as infertility and unfavorable pregnancy outcomes. Here, we present a study on a sample of 101 previously unreported pedigrees of der(13;14)(q10;q10). In order to minimize problems of partial ascertainment, we included families with a wide range of reasons of ascertainment such as birth of a child with congenital anomalies, prenatal diagnosis due to maternal age, fertility problems and recurrent pregnancy loss. No evidence of increased infertility rates of female and male carriers was found. The detected miscarriage frequency of female carriers was higher than previously reported (27.6 +/- 4.0% of all spontaneous pregnancies). This may be explained by an over-correction of earlier studies, which excluded all unkaryotyped miscarriages. In three out of 42 amniocenteses, translocation trisomies 13 were diagnosed (7.1 +/- 4.0% of all amniocenteses). The frequency of stillbirths was 3.3 +/- 1.6% for female carriers and 1.4 +/- 1.4% for male carriers. A low risk for the live birth of translocation trisomy 13 children was confirmed since no live born children with trisomy 13 or Pätau syndrome were detected in the ascertainment-corrected sample.
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- 2008
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34. Mild phenotypic manifestations of terminal deletion of the long arm of chromosome 4: clinical description of a new patient
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J. Jenderny, S. Waltz, and A. Caliebe
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Male ,Pathology ,medicine.medical_specialty ,Mild phenotype ,Gross motor skill ,Chromosome Disorders ,Biology ,Long arm ,Speech Disorders ,Craniofacial Abnormalities ,Facial dysmorphism ,Intellectual Disability ,Mild facial dysmorphism ,Genetics ,medicine ,Humans ,Abnormalities, Multiple ,Genetics (clinical) ,Chromosome Aberrations ,Karyotype ,Phenotype ,Chromosome 4 ,Motor Skills ,Child, Preschool ,Karyotyping ,Chromosome Deletion ,Chromosomes, Human, Pair 4 - Abstract
We present clinical and developmental data on a patient with a de novo terminal deletion of the long arm of chromosome 4. Cytogenetic studies after G-banding revealed the karyotype 46,XY,del(4)(q34). The 4-year-old male showed mild facial dysmorphism, moderate mental retardation with speech retardation, and marked deficits in gross motor skills. Our patient is the second with this deletion described in the literature. In both patients the phenotype was characterized by mild to moderate mental retardation, abnormalities of the pinnae, and nonspecific facial dysmorphism. The mild phenotype might explain why only two patients with this deletion have been described so far.
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- 2008
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35. GH responsiveness in a large multinational cohort of SGA children with short stature (NESTEGG) is related to the exon 3 GHR polymorphism
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Anita Hokken-Koelega, Linda Fryklund, Janina Caliebe, Timothy Nugent, Adrian J. L. Clark, Wietske A. Ester, J. Fauvel, M. Tauber, Michael B. Ranke, Catherine Molinas, L.B. Johnston, Françoise Conte Auriol, and M.O. Savage
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education.field_of_study ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Population ,Growth hormone receptor ,Biology ,medicine.disease ,Short stature ,Endocrinology ,Polymorphism (computer science) ,Internal medicine ,Cohort ,Genotype ,medicine ,Small for gestational age ,medicine.symptom ,education ,Cohort study - Abstract
Summary Objective The polymorphic deletion of exon 3 of the GH receptor (d3-GHR) has recently been linked to the magnitude of growth response to recombinant human GH (rhGH) therapy in short children with or without GH deficiency. We investigated this association in a large multinational cohort from the Network of European Studies of Genes in Growth (NESTEGG), comprising short children born small for gestational age (SGA). Design The study included short prepubertal SGA children treated with rhGH for 1 or 2 years. Population Two hundred and forty white Caucasian SGA children (138 male, 102 female) aged 6·6 ± 2·3 years with a height at ‐3·0 ± 0·7 SDS at start of rhGH treatment; 193 ethnically matched controls. Methods The GHR polymorphism (fl/fl, fl/d3 or d3/d3) was genotyped by polymerase chain reaction (PCR) multiplex assay. Growth velocity (G/V) in cm/year and changes in GV during the first and second year of rhGH treatment were evaluated. Results The change in GV was significantly greater in SGA children carrying one or two copies of the d3-GHR allele ( P = 0·038 for the first year and P = 0·041 for the second year of GH treatment), but the change in height was not significantly different. Birthweight was significantly lower in SGA children with the d3/d3 genotype than in SGA children with the fl/fl genotype ( P = 0·034) and in those with the fl/d3 genotype ( P = 0·016). Conclusion Our data, based on a large cohort, showed that the exon 3 GHR polymorphism is associated with responsiveness to rhGH treatment in SGA children with short stature.
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- 2007
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36. Distinction of Metal Species of Phytate by Solid-State Spectroscopic Techniques
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Perry J. Pellechia, C. Wayne Honeycutt, Zhongqi He, Tiequan Zhang, and W. Caliebe
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Phytic acid ,Absorption spectroscopy ,media_common.quotation_subject ,Soil Science ,Soil chemistry ,XANES ,NMR spectra database ,Metal ,chemistry.chemical_compound ,Speciation ,chemistry ,visual_art ,visual_art.visual_art_medium ,media_common ,Nuclear chemistry ,Group 2 organometallic chemistry - Abstract
Solid-state {sup 31}P nuclear magnetic resonance (NMR) and x-ray absorption near edge structure (XANES) spectroscopies have provided knowledge on metal speciation of inorganic P. No effort has been made, however, to accurately assign speciated metal phytates (inositol hexaphosphoric acid salts) using these advanced techniques. Phytate is a predominant form of organic P in animal manure, soil, and other organic substances as each year 51 million Mg of phytate are formed in crops and fruits globally. Currently, the interactions and fate of phytate in the environment are poorly understood. Here we show the solid-state spectral characteristics of six metal phytates. Both spectra were affected by the metal species of the phytates, as significant differences were observed in the shape and position of spectra among the metal phytates. Reference spectra of these pure metal phytate compounds may help in identifying metal species of phytate in environmental samples by these advanced spectroscopic technologies.
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- 2007
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37. Characterization of two supernumerary marker chromosomes in a patient with signs of Klinefelter syndrome, mild facial anomalies, and severe speech delay
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Katrin Õunap, Simone Metzke-Heidemann, Pille Tammur, Oliver Bartsch, Hansjörg Plendl, Walter Jonat, Regina Grunewald, Almuth Caliebe, Reiner Siebert, Jörg Weimer, and Norbert Arnold
- Subjects
Male ,Pathology ,medicine.medical_specialty ,Adolescent ,Marker chromosome ,Ring chromosome ,Aneuploidy ,Biology ,Y chromosome ,Speech Disorders ,Klinefelter Syndrome ,Genetics ,medicine ,Humans ,Abnormalities, Multiple ,Ring Chromosomes ,Supernumerary ,Child ,In Situ Hybridization, Fluorescence ,Genetics (clinical) ,Chromosomes, Human, Y ,medicine.diagnostic_test ,Karyotype ,medicine.disease ,Face ,Karyotyping ,Klinefelter syndrome ,Chromosomes, Human, Pair 8 ,Fluorescence in situ hybridization - Abstract
A boy with signs of Klinefelter syndrome, mild facial dysmorphic features, and severely retarded speech development displayed a female karyotype with mosaicism for two marker chromosomes 48,XX,+mar1,+mar2[68]/47,XX,+mar1[19]/47,XX,+mar2[6]/46,XX[8]. Using chromosomal microdissection, locus-specific fluorescence in situ hybridization (FISH), and PCR with several Y-chromosome markers, the larger supernumerary marker chromosome (SMC) was characterized as a ring Y-chromosome. Detection of the SRY-region explained the male phenotype. The smaller second marker chromosome contained the pericentromeric region of chromosome 8. We suggest that the co-occurrence of a partial Y-chromosome and partial trisomy 8 explain the severe speech delay and the facial dysmorphic features.
- Published
- 2006
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38. Maternal uniparental disomy 15 in a fetus resulting from a balanced familial translocation t(2;15)(p11;q11.2)
- Author
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Werner Grote, S Gesk, Almuth Caliebe, Inga Vater, J. R Exeler-Telker, Simone Heidemann, Hansjörg Plendl, and Reiner Siebert
- Subjects
Genetics ,medicine.medical_specialty ,Pregnancy ,Fetus ,Cytogenetics ,Obstetrics and Gynecology ,Robertsonian translocation ,Chromosomal translocation ,Karyotype ,Biology ,medicine.disease ,medicine.disease_cause ,Uniparental disomy ,medicine ,Gestation ,Genetics (clinical) - Published
- 2010
- Full Text
- View/download PDF
39. Absence of 9q22-9qter in trisomy 9 does not prevent a Dandy-Walker phenotype
- Author
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Walter Jonat, C.S. von Kaisenberg, B. J. Hackelöer, M. Krams, and Almuth Caliebe
- Subjects
congenital, hereditary, and neonatal diseases and abnormalities ,Pathology ,medicine.medical_specialty ,Chromosome 9 ,Chromosomal translocation ,Anatomy ,Biology ,medicine.disease ,Cisterna magna ,Trisomy 9 ,Enlarged cisterna magna ,Hypoplasia ,Cerebellar vermis ,medicine ,medicine.symptom ,Genetics (clinical) ,Micropolygyria - Abstract
We report on a female fetus with partial trisomy 9 due to a reciprocal translocation in the mother. Routine ultrasound examination at 23 weeks showed hypoplasia of the cerebellar vermis, dilated foramen Magendii, and dilatation of the cisterna magna. Due to the poor prognosis, the parents opted for termination of pregnancy. A postmortem examination confirmed caudal hypoplasia and dysplasia of the cerebellar vermis, resulting in a massively dilated foramen Magendii through which the enlarged cisterna magna communicated with the fourth ventricle. There was also micropolygyria indicating migration disorder. Cytogenetic studies showed a 47,XX,+der(9)t(7;9) (q35;q22.2)mat karyotype. Investigation of the parents revealed a translocation (7;9) (q35;q22.2) in the mother and a normal male karyotype in the father. We systematically searched the chromosome 9 gene map for genes that were trisomic in our fetus and genes that were located on the regions that had the normal two copies of genes. Genes that could potentially be involved in the formation of the Dandy-Walker phenotype are transcription factors or genes responsible for the regulation of normal in particular cerebral development but also adhesion molecules. We conclude that one cause for Dandy-Walker malformation could be a gene dosage effect of genes located on 9pter-9q22. In addition, it seems that absence of trisomy 9 in q22-pter does not prevent abnormal cerebellar development.
- Published
- 2000
- Full Text
- View/download PDF
40. Structural properties of (Ga,Mn)Sb thin films on GaAs(111)A substrate
- Author
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Elżbieta Dynowska, W. Caliebe, J. Z. Domagala, P. Romanowski, Tomasz Wojciechowski, Jadwiga Bak-Misiuk, and Janusz Sadowski
- Subjects
Materials science ,Condensed matter physics ,Hexagonal crystal system ,Scanning electron microscope ,Analytical chemistry ,Substrate (electronics) ,Thin film ,Condensed Matter Physics ,Molecular beam epitaxy - Abstract
GaSb/GaAs(111)A layers with embedded Mn(Ga)Sb clusters have been grown by molecular beam epitaxy method at the substrate temperature of 450 °C. The results of structural characterization of (Ga,Mn)Sb with Mn concentration up to 8% are presented. Almost all Mn atoms introduced into the GaSb layers form hexagonal Mn(Ga)Sb clusters. Large hexagonal clusters with various shape and dimensions were detected by scanning electron microscopy. (© 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)
- Published
- 2009
- Full Text
- View/download PDF
41. Microarray-based DNA methylation analysis of imprinted loci in a patient with transient neonatal diabetes mellitus
- Author
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René Santer, Deborah J G Mackay, Jian-Bing Fan, Nadia Sellami, I. Karen Temple, Almuth Caliebe, José I. Martín-Subero, Marina Bibikova, Julia Richter, Eliza Wickham-Garcia, and Reiner Siebert
- Subjects
Genetics ,Microarray ,Microarray analysis techniques ,Infant, Newborn ,Locus (genetics) ,Methylation ,DNA Methylation ,Biology ,Microarray Analysis ,medicine.disease ,Infant, Newborn, Diseases ,Genomic Imprinting ,Diabetes mellitus genetics ,Transient neonatal diabetes mellitus ,Case-Control Studies ,Diabetes mellitus ,DNA methylation ,Diabetes Mellitus ,medicine ,Humans ,Genetics (clinical) - Published
- 2008
- Full Text
- View/download PDF
42. Prenatal diagnosis of ductus venosus agenesis: a report of two cases and review of the literature
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Ulrich Gembruch, A. Caliebe, Ludwig Gortner, and Ahmet Baschat
- Subjects
Thorax ,congenital, hereditary, and neonatal diseases and abnormalities ,medicine.medical_specialty ,Fetus ,Radiological and Ultrasound Technology ,medicine.diagnostic_test ,Obstetrics ,business.industry ,Obstetrics and Gynecology ,Gestational age ,Prenatal diagnosis ,General Medicine ,Reproductive Medicine ,cardiovascular system ,medicine ,Amniocentesis ,Radiology, Nuclear Medicine and imaging ,cardiovascular diseases ,business ,Ductus venosus ,Venous return curve ,Ductus Venosus Agenesis - Abstract
Anomalies of venous return due to absence of the ductus venosus have been described in the literature. This is a report of the prenatal diagnosis of two cases of isolated ductus venosus agenesis occurring at 20 and 37 weeks' gestation, confirmed postnatally by color-coded Doppler sonography. In both cases the hepatic veins assumed the function of the ductus venosus without compromising fetal hemodynamics or causing hydrops. In the first case, a healthy female infant was delivered at term. In the second case, a 46,XY,dup(8) (q21.1q22)[35]/47,idem, + r(8)[15] karyotype was diagnosed by amniocentesis. The male newborn showed facial anomalies, a bell-shaped thorax and increased intermamillary distance. There was muscular hypotonia, delayed psychomotor development and an inspiratory stridor leading to obstructive nocturnal dyspnea. On the basis of our observations in these two cases and previous reports from animal studies, we conclude that absence of the ductus venosus may be compatible with normal fetal development without relevant disturbance of circulation and oxygenation.
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- 1998
- Full Text
- View/download PDF
43. Toward defect-free semi-polar GaN templates on pre-structured sapphire (Phys. Status Solidi B 5/2016)
- Author
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Tongtong Zhu, Marian Caliebe, Ferdinand Scholz, Fredrik S. Hage, Colin J. Humphreys, Yisong Han, Markus Pristovsek, and Quentin M. Ramasse
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Template ,Materials science ,business.industry ,Sapphire ,Optoelectronics ,Polar ,Defect free ,Condensed Matter Physics ,business ,Electronic, Optical and Magnetic Materials - Published
- 2016
- Full Text
- View/download PDF
44. No mutation in the gene for Noonan syndrome,PTPN11, in 18 patients with Costello syndrome
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Dagmar Wieczorek, Elke Hobbiebrunken, Birte Tröger, Almuth Caliebe, Peter Meinecke, Sabine Lüttgen, Andreas Gal, Berthold Streubel, Hanno J. Bolz, Peter Freisinger, M Stefanova, Zsuzsanna Almassy, Michel Morlot, and Kerstin Kutsche
- Subjects
Genetics ,0303 health sciences ,medicine.medical_specialty ,business.industry ,030305 genetics & heredity ,medicine.disease ,Osteochondrodysplasia ,Dermatology ,Genetic determinism ,PTPN11 ,03 medical and health sciences ,Costello syndrome ,Mutation (genetic algorithm) ,medicine ,Noonan syndrome ,business ,Gene ,Genetics (clinical) ,030304 developmental biology - Published
- 2003
- Full Text
- View/download PDF
45. Periodontal manifestation of hypophosphatasia. A family case report
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Norbert Kuhrau, Thomas D. Kocher, Plagmann Hc, and Almuth Caliebe
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Male ,medicine.medical_specialty ,Periodontal Ligament ,Alveolar Bone Loss ,Root Resorption ,Hypophosphatasia ,Dentistry ,Tooth Exfoliation ,Alkaline phosphatase blood ,Deciduous teeth ,Humans ,Medicine ,Tooth, Deciduous ,Pathological ,Dental Pulp ,Periodontal Diseases ,Single family ,Dental Cementum ,business.industry ,Infant ,Alkaline Phosphatase ,medicine.disease ,Dermatology ,medicine.anatomical_structure ,Child, Preschool ,Periodontics ,Female ,Inherited disease ,business ,Premature deciduous tooth loss - Abstract
Hypophosphatasia is a rare inherited disease, the 1st clinical sign of which is often a premature loss of deciduous teeth. We describe clinical, histological and SEM findings of 2 cases of hypophosphatasia from a single family and discuss the pathological mechanisms with reference to the literature.
- Published
- 1994
- Full Text
- View/download PDF
46. Immunochip analysis identifies association of theRAD 50/ IL 13region with human longevity
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Flachsbart, Friederike, primary, Ellinghaus, David, additional, Gentschew, Liljana, additional, Heinsen, Femke‐Anouska, additional, Caliebe, Amke, additional, Christiansen, Lene, additional, Nygaard, Marianne, additional, Christensen, Kaare, additional, Blanché, Hélène, additional, Deleuze, Jean‐François, additional, Derbois, Céline, additional, Galan, Pilar, additional, Büning, Carsten, additional, Brand, Stephan, additional, Peters, Anette, additional, Strauch, Konstantin, additional, Müller‐Nurasyid, Martina, additional, Hoffmann, Per, additional, Nöthen, Markus M., additional, Lieb, Wolfgang, additional, Franke, Andre, additional, Schreiber, Stefan, additional, and Nebel, Almut, additional
- Published
- 2016
- Full Text
- View/download PDF
47. Semipolar GaN-based heterostructures on foreign substrates (Phys. Status Solidi B 1/2016)
- Author
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Scholz, Ferdinand, primary, Caliebe, Marian, additional, Gahramanova, Gulnaz, additional, Heinz, Dominik, additional, Klein, Martin, additional, Leute, Robert A. R., additional, Meisch, Tobias, additional, Wang, Junjun, additional, Hocker, Matthias, additional, and Thonke, Klaus, additional
- Published
- 2016
- Full Text
- View/download PDF
48. The Co-Occurrence of Tricho-Rhino-Phalangeal Syndrome and Early-Onset Levodopa-Sensitive Parkinsonism
- Author
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Susanne A. Schneider, Günther Deuschl, Franziska Hopfner, and Almuth Caliebe
- Subjects
Levodopa ,medicine.medical_specialty ,business.industry ,Parkinsonism ,Case Reports ,medicine.disease ,Dermatology ,Young onset Parkinson disease ,Neurology ,medicine ,Tricho–rhino–phalangeal syndrome ,Neurology (clinical) ,business ,Early onset ,medicine.drug - Published
- 2014
- Full Text
- View/download PDF
49. Mutations in CDK5RAP2 cause Seckel syndrome
- Author
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Yigit, Goekhan, Brown, Karen E., Kayserili, Hulya, Pohl, Esther, Caliebe, Almuth, Zahnleiter, Diana, Rosser, Elisabeth, Boegershausen, Nina, Uyguner, Zehra Oya, Altunoglu, Umut, Nuernberg, Gudrun, Nuernberg, Peter, Rauch, Anita, Li, Yun, Thiel, Christian Thomas, Wollnik, Bernd, Yigit, Goekhan, Brown, Karen E., Kayserili, Hulya, Pohl, Esther, Caliebe, Almuth, Zahnleiter, Diana, Rosser, Elisabeth, Boegershausen, Nina, Uyguner, Zehra Oya, Altunoglu, Umut, Nuernberg, Gudrun, Nuernberg, Peter, Rauch, Anita, Li, Yun, Thiel, Christian Thomas, and Wollnik, Bernd
- Abstract
Seckel syndrome is a heterogeneous, autosomal recessive disorder marked by prenatal proportionate short stature, severe microcephaly, intellectual disability, and characteristic facial features. Here, we describe the novel homozygous splice-site mutations c. 383+ 1G>C and c. 4005-9A>G in CDK5RAP2 in two consanguineous families with Seckel syndrome. CDK5RAP2 (CEP215) encodes a centrosomal protein which is known to be essential for centrosomal cohesion and proper spindle formation and has been shown to be causally involved in autosomal recessive primary microcephaly. We establish CDK5RAP2 as a disease-causing gene for Seckel syndrome and show that loss of functional CDK5RAP2 leads to severe defects in mitosis and spindle organization, resulting in cells with abnormal nuclei and centrosomal pattern, which underlines the important role of centrosomal and mitotic proteins in the pathogenesis of the disease. Additionally, we present an intriguing case of possible digenic inheritance in Seckel syndrome: A severely affected child of nonconsanguineous German parents was found to carry heterozygous mutations in CDK5RAP2 and CEP152. This finding points toward a potential additive genetic effect of mutations in CDK5RAP2 and CEP152.
- Published
- 2015
50. Mutations in CDK5RAP2 cause Seckel syndrome
- Author
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Karabey, Hülya Kayserili (ORCID 0000-0003-0376-499X & YÖK ID 7945), Yiğit, G.; Brown, K. E.; Pohl, E.; Caliebe, A.; Zahnleiter, D.; Rosser, E.; Bögershausen, N.; Uyguner, Z. O.; Altunoğlu, U.; Nürnberg, G.; Nürnberg, P.; Rauch, A.; Li, Y.; Thiel, C. T.; Wollnik, B., School of Medicine, Department of Medical Genetics, Karabey, Hülya Kayserili (ORCID 0000-0003-0376-499X & YÖK ID 7945), Yiğit, G.; Brown, K. E.; Pohl, E.; Caliebe, A.; Zahnleiter, D.; Rosser, E.; Bögershausen, N.; Uyguner, Z. O.; Altunoğlu, U.; Nürnberg, G.; Nürnberg, P.; Rauch, A.; Li, Y.; Thiel, C. T.; Wollnik, B., School of Medicine, and Department of Medical Genetics
- Abstract
Seckel syndrome is a heterogeneous, autosomal recessive disorder marked by prenatal proportionate short stature, severe microcephaly, intellectual disability, and characteristic facial features. Here, we describe the novel homozygous splice-site mutations c.383+1G>C and c.4005-9A>G in CDK5RAP2 in two consanguineous families with Seckel syndrome. CDK5RAP2 (CEP215) encodes a centrosomal protein which is known to be essential for centrosomal cohesion and proper spindle formation and has been shown to be causally involved in autosomal recessive primary microcephaly. We establish CDK5RAP2 as a disease-causing gene for Seckel syndrome and show that loss of functional CDK5RAP2 leads to severe defects in mitosis and spindle organization, resulting in cells with abnormal nuclei and centrosomal pattern, which underlines the important role of centrosomal and mitotic proteins in the pathogenesis of the disease. Additionally, we present an intriguing case of possible digenic inheritance in Seckel syndrome: A severely affected child of nonconsanguineous German parents was found to carry heterozygous mutations in CDK5RAP2 and CEP152. This finding points toward a potential additive genetic effect of mutations in CDK5RAP2 and CEP152., German Federal Ministry of Education and Research (BMBF); Scientific and Technological Research Council of Turkey (TÜBİTAK)
- Published
- 2015
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