64 results on '"CEA Grenoble"'
Search Results
2. Substrate-dependent oxidative inactivation of a W-dependent formate dehydrogenase involving selenocysteine displacement.
- Author
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Vilela-Alves G, Manuel RR, Viegas A, Carpentier P, Biaso F, Guigliarelli B, Pereira IAC, Romão MJ, and Mota C
- Abstract
Metal-dependent formate dehydrogenases are very promising targets for enzyme optimization and design of bio-inspired catalysts for CO
2 reduction, towards innovative strategies for climate change mitigation. For effective application of these enzymes, the catalytic mechanism must be better understood, and the molecular determinants clarified. Despite numerous studies, several doubts persist, namely regarding the role played by the possible dissociation of the SeCys ligand from the Mo/W active site. Additionally, the oxygen sensitivity of these enzymes must also be understood as it poses an important obstacle for biotechnological applications. This work presents a combined biochemical, spectroscopic, and structural characterization of Desulfovibrio vulgaris FdhAB ( Dv FdhAB) when exposed to oxygen in the presence of a substrate (formate or CO2 ). This study reveals that O2 inactivation is promoted by the presence of either substrate and involves forming a different species in the active site, captured in the crystal structures, where the SeCys ligand is displaced from tungsten coordination and replaced by a dioxygen or peroxide molecule. This form was reproducibly obtained and supports the conclusion that, although W- Dv FdhAB can catalyse the oxidation of formate in the presence of oxygen for some minutes, it gets irreversibly inactivated after prolonged O2 exposure in the presence of either substrate., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)- Published
- 2024
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3. Investigating the role of the strong field ligands in [FeFe] hydrogenase: spectroscopic and functional characterization of a semi-synthetic mono-cyanide active site.
- Author
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Lorenzi M, Gellett J, Zamader A, Senger M, Duan Z, Rodríguez-Maciá P, and Berggren G
- Abstract
Artificial maturation of hydrogenases provides a path towards generating new semi-synthetic enzymes with novel catalytic properties. Here enzymes featuring a synthetic asymmetric mono-cyanide cofactor have been prepared using two different hydrogenase scaffolds. Their structure and reactivity was investigated in order to elucidate the design rationale behind the native di-cyanide cofactor, and by extension the second coordination sphere of the active-site pocket. Surprisingly, the choice of host enzyme was found to have a dramatic impact on reactivity. Moreover, the study shows that synthetic manipulations of the active-site can significantly increase inhibitor tolerance, as compared to native [FeFe] hydrogenase, while retaining the enzyme's native capacity for reversible catalysis., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2022
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4. Magneto-mechanical treatment of human glioblastoma cells with engineered iron oxide powder microparticles for triggering apoptosis.
- Author
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Thébault C, Marmiesse M, Naud C, Pernet-Gallay K, Billiet E, Joisten H, Dieny B, Carrière M, Hou Y, and Morel R
- Abstract
In nanomedicine, treatments based on physical mechanisms are more and more investigated and are promising alternatives for challenging tumor therapy. One of these approaches, called magneto-mechanical treatment, consists in triggering cell death via the vibration of anisotropic magnetic particles, under a low frequency magnetic field. In this work, we introduce a new type of easily accessible magnetic microparticles (MMPs) and study the influence of their surface functionalization on their ability to induce such an effect, and its mechanism. We prepared anisotropic magnetite microparticles by liquid-phase ball milling of a magnetite powder. These particles are completely different from the often-used SPIONs: they are micron-size, ferromagnetic, with a closed-flux magnetic structure reminiscent of that of vortex particles. The magnetic particles were covered with a silica shell, and grafted with PEGylated ligands with various physicochemical properties. We investigated both bare and coated particles' in vitro cytotoxicity, and compared their efficiency to induce U87-MG human glioblastoma cell apoptosis under a low frequency rotating magnetic field (RMF). Our results indicated that (1) the magneto-mechanical treatment with bare MMPs induces a rapid decrease in cell viability whereas the effect is slower with PEGylated particles; (2) the number of apoptotic cells after magneto-mechanical treatment is higher with PEGylated particles; (3) a lower frequency of RMF (down to 2 Hz) favors the apoptosis. These results highlight a difference in the cell death mechanism according to the properties of particles used - the rapid cell death observed with the bare MMPs indicates a death pathway via necrosis, while PEGylated particles seem to favor apoptosis., Competing Interests: There are no conflicts of interest to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2021
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5. Shape-tuned, surface-active and support-free silver oxygen reduction electrocatalyst enabled high performance fully non-PGM alkaline fuel cell.
- Author
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Anandha Ganesh P, Prakrthi AN, Selva Chandrasekaran S, and Jeyakumar D
- Abstract
Exploring non-platinum group metal (n-PGM) based efficient oxygen reduction reaction (ORR) electro-catalysts is highly important for realizing advancement in sustainable next generation-alkaline anion exchange membrane fuel cells (AAEMFCs). Herein, we demonstrate a new "hierarchical shape tuning approach" for the synthesis of controlled sized and shaped non-PGM based Ag ORR electro-catalysts with surface active nano-islands. Hierarchical shapes ranging from spherical (S-AgNs), worm-in-sphere, sphere-in-worm and vermiform (worm-like) Ag nanostructures (V-AgNs) were obtained by precisely varying the ratios of capping agent to dual reducing agents in water at ambient conditions. Compared to S-AgNs, V-AgNs revealed a higher mass normalized ORR Tafel activity (0.303 A mg
Ag -1 at 0.9 V), onset (1.06 V) and half wave (0.78 V) potentials and higher retention of limiting current density (>88%) after 5000 cycles in 0.5 M potassium hydroxide (KOH) solution attributable to their unique worm like morphology with surface active nano-islands and support free-nature enabled better catalyst utilization. In a fully "non-PGM AAEMFC" (n-PAAEMFC), V-AgNs exhibited the highest fuel cell activity of 115.6 mW cm-2 and stable short-term durability (∼240 h) compared to S-AgNs (41.3 mW cm-2 ) and previously reported fully n-PAAEMFCs indicating their potential use in next-generation alkaline fuel cells., Competing Interests: Authors declare no conflict of interest., (This journal is © The Royal Society of Chemistry.)- Published
- 2021
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6. Krypton-derivatization highlights O 2 -channeling in a four-electron reducing oxidase.
- Author
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Engilberge S, Wagner T, Carpentier P, Girard E, and Shima S
- Subjects
- Hydrogen Peroxide chemistry, Hydrogen Peroxide metabolism, Hydrophobic and Hydrophilic Interactions, Krypton chemistry, Methanobacteriaceae enzymology, Models, Molecular, Oxidation-Reduction, Oxidoreductases chemistry, Oxygen chemistry, Electrons, Krypton metabolism, Oxidoreductases metabolism, Oxygen metabolism
- Abstract
F420H2-oxidase (FprA) catalyses the four-electron reduction of O2 to 2H2O using the reduced form of F420 as electron donor. The hydrophobic O2-channel detected by Kr-derivatization and the concerted movement of a gating loop could contribute to prevent unwanted side-reaction between the catalytic intermediates and solvents, therefore preventing reactive oxygen species formation.
- Published
- 2020
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7. Self-assembly of porphyrin-DNA hybrids into large flat nanostructures.
- Author
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Chatelain G, Clavé G, Saint-Pierre C, Gasparutto D, and Campidelli S
- Subjects
- Nanotechnology, DNA chemistry, Nanostructures chemistry, Porphyrins chemistry
- Abstract
The main aim of nanotechnology is to create functional systems by controlling the matter at the nanometer level. In this context DNA is a versatile building block for the fabrication of micrometer-scale objects with a subnanometer-scale resolution. Over the last 15 years, DNA nanotechnology has considerably developed with the invention of DNA origami, double crossover structures and molecule/oligonucleotide hybrids. Our interest is focused on the combination of short complementary DNA sequences with organic molecules with a view to create large self-assembled nanostructures. Here we report on the synthesis of porphyrin derivatives bearing up to four 21-mer oligonucleotides and we demonstrate that the combination of the molecular hybrids containing complementary DNA strands leads to the formation of large nanostructures with micrometer-scale size.
- Published
- 2017
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8. An oxime-based glycocluster microarray.
- Author
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Hoang A, Laigre E, Goyard D, Defrancq E, Vinet F, Dumy P, and Renaudet O
- Subjects
- Molecular Conformation, Carbohydrates chemistry, Microarray Analysis, Oximes chemistry
- Abstract
Carbohydrate microarrays represent powerful tools to study and detect carbohydrate-binding proteins, pathogens or cells. In this paper, we report two original oxime-based methods to prepare surfaces displaying well-defined structures and valency in a given microspot with improved recognition potency with lectins. In a first "direct" approach, fully synthetic aminooxylated glycoclusters have been coated onto aldehyde-activated SiO
2 (silicium substrate doped with 50 nm thermal oxide layer). To improve the preparation of the microarray in terms of rapidity and simplicity and to provide addressable surfaces on which sugars can be linked chemoselectively as clusters at defined plots, a second "indirect" strategy has been developed using successive oxime ligation steps. In both cases, binding assays with labelled lectins have revealed more potent and selective interaction due to the clustered presentation of sugars. The observed differences of interaction have been confirmed in solution by ITC.- Published
- 2017
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9. Optimization of hydrophilic/hydrophobic phase separation in sPEEK membranes by hydrothermal treatments.
- Author
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Mendil-Jakani H, Zamanillo López I, Mareau VH, and Gonon L
- Abstract
Via SAXS, herein, we studied how a sPEEK microstructure evolves when it is immersed in water at a wide range of temperatures (20-100 °C) and time scales (from a few hours to dozens of days). In particular, we scrutinized the behavior of sPEEK at the temperature and time associated with the appearance of a well-defined nanosegregated morphology. At 80 °C, we observed nanoscale swelling along with smoothing of the water/polymer interface over a long period of time (several days). Herein, two of the main membrane properties, i.e., water uptake and proton conductivity, were studied for different immersion times and temperatures. It was found that the abovementioned properties were remarkably correlated with the evolution of the membrane microstructure, which was partly conserved after drying. The present findings helped us to understand that the thermally activated evolutions observed at both the nanoscale and macroscale were associated with the sPEEK β-relaxation crossover. Therefore, the very different swelling behaviors of sPEEK and Nafion are correlated to the much higher β-relaxation of sPEEK vs. Nafion (75 °C vs. -20 °C - dry state). From a practical viewpoint, this study emphasizes, for membranes alternative to Nafion, the importance and impact of the membrane pretreatment on their functional properties.
- Published
- 2017
- Full Text
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10. Efficient conversion of alkenes to chlorohydrins by a Ru-based artificial enzyme.
- Author
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Lopez S, Rondot L, Cavazza C, Iannello M, Boeri-Erba E, Burzlaff N, Strinitz F, Jorge-Robin A, Marchi-Delapierre C, and Ménage S
- Subjects
- Catalysis, Coordination Complexes chemistry, Molecular Conformation, Spectroscopy, Fourier Transform Infrared, Stereoisomerism, Alkenes chemistry, Chlorohydrins chemistry, Ruthenium chemistry
- Abstract
Artificial enzymes are required to catalyse non-natural reactions. Here, a hybrid catalyst was developed by embedding a novel Ru complex in the transport protein NikA. The protein scaffold activates the bound Ru complex to produce a catalyst with high regio- and stereo-selectivity. The hybrid efficiently and stably produced α-hydroxy-β-chloro chlorohydrins from alkenes (up to 180 TON with a TOF of 1050 h
-1 ).- Published
- 2017
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11. What will freestanding borophene nanoribbons look like? An analysis of their possible structures, magnetism and transport properties.
- Author
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García-Fuente A, Carrete J, Vega A, and Gallego LJ
- Abstract
We report a density-functional theory study of the stability and electronic structure of two recently proposed borophene sheets with Pmmn symmetry and nonzero thickness. We then investigate nanoribbons (BNRs) derived from these nanostructures, with particular attention to technologically relevant properties like magnetism and electronic transport. We consider two perpendicular directions for the edges of the stripes as well as different lateral widths. We show that the Pmmn8 sheet, with 8 atoms in its unit cell and generated by two interpenetrating lattices, has a larger binding energy than the Pmmn2 sheet, with only 2 atoms per unit cell. We also use their phonon spectra to show that the mechanical stability of the Pmmn8 sheet is superior to that of the Pmmn2 sheet. Nanoribbons derived from Pmmn8 are not only more stable than those derived from Pmmn2, but also more interesting from the technological point of view. We find a rich variety of magnetic solutions, depending on the borophene "mother structure", edge orientation, width and, in the case of Pmmn8-derived BNRs, the sublattice of edge atoms. We show that one can build BNRs with magnetic moment in both, one or none of the edges, as well as with parallel or antiparallel magnetic coupling between the edges when magnetic; moreover, their electronic character can be semiconducting, metallic or half-metallic, creating a perfect spin valve at low bias. These different behaviors are reflected in their densities of states, spin density and electronic transport coefficients, which are analyzed in detail. Our work provides a complete overview of what one may expect if nanoribbons are cut out from Pmmn sheets with a view to potential technological applications.
- Published
- 2017
- Full Text
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12. A redox active switch for lanthanide luminescence in phenolate complexes.
- Author
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Molloy JK, Jarjayes O, Philouze C, Fedele L, Imbert D, and Thomas F
- Subjects
- Oxidation-Reduction, Lanthanoid Series Elements chemistry, Luminescence, Phenols chemistry
- Abstract
The reversible oxidation of coordinated phenolates into phenoxyl radicals results in a dramatic quenching (>95%) of the luminescence of the f metal ion.
- Published
- 2017
- Full Text
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13. Asymmetric bi-layer PFSA membranes as model systems for the study of water management in the PEMFC.
- Author
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Peng Z, Morin A, Huguet P, Lanteri Y, and Deabate S
- Abstract
New bi-layer PFSA membranes made of Nafion® NRE212 and Aquivion™ E79-05s with different equivalent weights are prepared with the aim of managing water repartition in the PEMFC. The membrane water transport properties, i.e. back-diffusion and electroosmosis, as well as the electrochemical performances, are compared to those of state-of-art materials. The actual water content (the inner water concentration profile across the membrane thickness) is measured under operation in the fuel cell by in situ Raman microspectroscopy. The orientation of the equivalent weight gradient with respect to the water external gradient and to the proton flow direction affects the membrane water content, the water transport ability and, thus, the fuel cell performances. Higher power outputs, related to lower ohmic losses, are observed when the membrane is assembled with the lower equivalent weight layer (Aquivion™) at the anode side. This orientation, corresponding to enhanced water transport by back-flow while electroosmosis remains unaffected, results in the higher hydration of the membrane and of the anode active layer during operation. Also, polarization data suggest a different water repartition in the fuel cell along the on-plane direction. Even if the interest in multi-layer PFSA membranes as perspective electrolytes for PEMFCs is not definitively attested, these materials appear to be excellent model systems to establish relationships between the membrane transport properties, the water distribution in the fuel cell and the electrochemical performances. Thanks to the micrometric resolution, in situ Raman microspectroscopy proves to be a unique tool to measure the actual hydration of the membrane at the surface swept by the hydrated feed gases during operation, so that it can be used as a local probe of the water concentration evolution along the gas distribution channels according to changing working conditions.
- Published
- 2014
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14. A new interpretation of SAXS peaks in sulfonated poly(ether ether ketone) (sPEEK) membranes for fuel cells.
- Author
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Mendil-Jakani H, Zamanillo Lopez I, Legrand PM, Mareau VH, and Gonon L
- Abstract
The structure of a commercial sulfonated poly(ether ether ketone) (sPEEK) membrane was analyzed by Small-Angle X-Ray Scattering (SAXS) for different water uptakes obtained after immersion in liquid water at various temperatures. For low membrane swelling, the SAXS profile displays only a wide-angle peak in the 0.2-0.3 Å(-1) region. As the membrane swells, two supplementary correlation peaks arise and shift towards small angles, which are the signature of a structural evolution of the membrane, whereas the wide angle peak remains stable. The SAXS spectra of sPEEK membranes can thus display three correlation peaks simultaneously. Therefore we propose a new interpretation of these SAXS spectra which conclude that the two small angle peaks are attributed to the so-called matrix and ionomer peaks and the wide-angle peak is ascribed to the mean separation distance between sulfonic acid groups grafted onto the polymer backbone. This peak attribution implies that the sPEEK nano-phase separation is triggered by an immersion in hot water (ionomer peak apparition). Our new peak attribution was confirmed by studying the impact of temperature, electron density contrast and ionic exchange capacity.
- Published
- 2014
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15. Optimizing the relaxivity of GdIII complexes appended to InP/ZnS quantum dots by linker tuning.
- Author
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Stasiuk GJ, Tamang S, Imbert D, Gateau C, Reiss P, Fries P, and Mazzanti M
- Subjects
- Contrast Media chemistry, Gadolinium chemistry, Quantum Dots, Zinc Sulfate chemistry
- Abstract
Three bimodal MRI/optical nanosized contrast agents with high per-nanoparticle relaxivity (up to 2523 mM(-1) s(-1) at 35 MHz and 932 mM(-1) s(-1) at 200 MHz) have been prepared connecting up to 115 tris-aqua Gd(III) complexes to fluorescent non-toxic InP/ZnS quantum dots. The structure of the linker has an important effect on the relaxivity of the final multimeric contrast agent.
- Published
- 2013
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16. Characterization of strain recovery and "self-healing" in a self-assembled metallo-gel.
- Author
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Terech P, Yan M, Maréchal M, Royal G, Galvez J, and Velu SK
- Abstract
We report a self-assembled metallo suprapolymer gel exhibiting remarkable self-healing features. The Ni2BTC metallo suprapolymer gels result from the complexation of Ni(2+) metal ions by a tritopic ligand (bis-terpyridine cyclam) in dimethylformamide (DMF) and an annealing step at 50 °C for 24 hours. The self-healing properties are characterized by visual inspection, rheological and impedance spectroscopy measurements: the results are compared with those of a fatty acid-based molecular organogel chosen as a reference system. The creep-recovery analysis uses the Burgers model for low strains and characterizes a recovery capability of up to 72% of the deformation in Ni2BTC gels while it is only 32% for the fatty acid organogel. At very large strains, the impedance spectroscopy confirms the slow repairing process consistently with the visual observations. Rheological measurements demonstrate the restructuring of the fractured networks. The fatigue of the self-healed gel networks undergoing long sequences of strain-relaxation steps is characterized.
- Published
- 2013
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17. Charge Photo-Accumulation and Photocatalytic Hydrogen Evolution Under Visible Light at an Iridium(III)-Photosensitized Polyoxotungstate.
- Author
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Matt B, Fize J, Moussa J, Amouri H, Pereira A, Artero V, Izzet G, and Proust A
- Abstract
Steady-state irradiation under visible light of a covalent Ir(III)-photosensitized polyoxotungstate is reported. In the presence of a sacrificial electron donor, the photolysis leads to the very efficient photoreduction of the polyoxometalate. Successive formation of the one-electron and two-electron reduced species, which are unambiguously identified by comparison with spectroelectrochemical measurements, is observed with a significantly faster rate reaction for the formation of the one-electron reduced species. The kinetics of the photoreduction, which are correlated to the reduction potentials of the polyoxometalate (POM), can be finely tuned by the presence of an acid. Indeed light-driven formation of the two-electron reduced POM is considerably facilitated in the presence of acetic acid. The system is also able to perform photocatalytic hydrogen production under visible light without significant loss of performance over more than 1 week of continuous photolysis and displays higher photocatalytic efficiency than the related multi-component system, outlining the decisive effect of the covalent bonding between the POM and the photosensitizer. This functional and modular system constitutes a promising step for the development of charge photoaccumulation devices and subsequent photoelectrocatalysts for artificial photosynthesis.
- Published
- 2013
- Full Text
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18. A cyclic peptide-based redox-active model of rubredoxin.
- Author
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Jacques A, Clémancey M, Blondin G, Fourmond V, Latour JM, and Sénèque O
- Subjects
- Amino Acid Sequence, Binding Sites, Clostridium, Iron metabolism, Oxidation-Reduction, Protein Conformation, Models, Molecular, Peptides, Cyclic chemistry, Rubredoxins chemistry, Rubredoxins metabolism
- Abstract
A model of rubredoxin based on a cyclic peptide with a linear tail is presented. This model reproduces almost perfectly the fold, the spectroscopic characterizations and the redox activity of rubredoxins.
- Published
- 2013
- Full Text
- View/download PDF
19. A tetrameric neptunyl(v) cluster supported by a Schiff base ligand.
- Author
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Copping R, Mougel V, Den Auwer C, Berthon C, Moisy P, and Mazzanti M
- Abstract
The first tetrameric cation-cation neptunyl(v) cluster, [{NpO(2)(salen)}(4)(μ(8)-K)(2)][K(18C6)Py](2), has been synthesized in non-aqueous solution from the reaction of [(NpO(2)Py(5))(KI(2)Py(2))](n) with K(2)salen and its structure determined in the solid state and in solution where the complex retains its tetrameric form.
- Published
- 2012
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20. Influence of polymorphism on charge transport properties in isomers of fluorenone-based liquid crystalline semiconductors.
- Author
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Lincker F, Attias AJ, Mathevet F, Heinrich B, Donnio B, Fave JL, Rannou P, and Demadrille R
- Subjects
- Molecular Structure, Semiconductors, Stereoisomerism, Fluorenes chemistry, Liquid Crystals chemistry
- Abstract
We measured the charge carrier mobilities for two isomers of fluorenone-based liquid crystalline organic semiconductors from their isotropic down to crystalline states through one or two mesophases. Improved charge transport properties of melt-processed crystalline films were obtained for the isomer exhibiting a highly ordered mesophase below its disordered smectic phase., (This journal is © The Royal Society of Chemistry 2012)
- Published
- 2012
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21. Self-assembly of highly luminescent lanthanide complexes promoted by pyridine-tetrazolate ligands.
- Author
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Andreiadis ES, Imbert D, Pécaut J, Demadrille R, and Mazzanti M
- Subjects
- Absorption, Ligands, Luminescent Agents chemical synthesis, Models, Molecular, Molecular Conformation, Organometallic Compounds chemical synthesis, Solutions, Lanthanoid Series Elements chemistry, Luminescent Agents chemistry, Organometallic Compounds chemistry, Pyridines chemistry, Tetrazoles chemistry
- Abstract
Two tridentate pyridine-tetrazolate ligands (H(2)pytz and H(2)pytzc), analogues of the well-known dipicolinate (H(2)dpa) ligand, have been synthesized in a straightforward manner and used for lanthanide(III) coordination. The structures of the resulting tris-ligand complexes were determined in solution ((1)H-NMR), where they remain undissociated, as well as in the solid state (X-ray diffraction). The solubility of these anionic complexes can be easily tuned by changing the countercation. The bis-tetrazolate-pyridine ligand H(2)pytz sensitizes very efficiently both the visible and near-IR emission of the lanthanides, with unusually high luminescence quantum yields in solid state (61% and 65% for Eu and Tb, respectively, and 0.21% for Nd) and in water (63% for Tb and 18% for Eu). Furthermore, the absorption window of the complexes is significantly extended towards the visible region up to 330 nm. The results show that the bis-tetrazolate-pyridine ligand provides a very attractive alternative to the classic dipicolinate ligand.
- Published
- 2012
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22. Magnetic properties of a doped linear polyarylamine bearing a high concentration of coupled spins (S = 1).
- Author
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Maurel V, Jouni M, Baran P, Onofrio N, Gambarelli S, Mouesca JM, Djurado D, Dubois L, Jacquot JF, Desfonds G, and Kulszewicz-Bajer I
- Abstract
Magnetic properties of a doped linear polyarylamine (PA2), whose chain includes alternating para-phenylene and meta-phenylene groups, and of two cyclic and linear model compounds (C2 and D2) were explored by pulsed-EPR nutation spectroscopy, SQUID magnetometry and DFT calculations. Stoichiometrically doped PA2 samples exhibit a pure S = 1 state (exchange coupling constant J = 18 K) with a high spin concentration (0.65) corresponding to 65% of mers bearing holes. Such properties were already observed for doped reticulated polyarylamines but are quite unusual for doped linear polyarylamines. In order to better understand the properties of PA2, model compounds C2 and D2 were also investigated: pure S = 1 spin states could also be obtained, but with higher J (respectively 57 K and 35 K) and, surprisingly, with high but still limited spin concentrations (respectively 0.77 and 0.65).
- Published
- 2012
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23. New polynuclear U(IV)-U(V) complexes from U(IV) mediated uranyl(V) disproportionation.
- Author
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Mougel V, Pécaut J, and Mazzanti M
- Subjects
- Crystallization, Ligands, Molecular Structure, Schiff Bases chemistry, X-Ray Diffraction, Uranium Compounds chemistry
- Abstract
U(IV) promotes the disproportionation of otherwise stable uranyl(V) Schiff base complexes affording U(IV)-U(V) oxo clusters with new geometries and the first example of a U(IV)···UO(2)(+) cation-cation interaction., (This journal is © The Royal Society of Chemistry 2012)
- Published
- 2012
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24. Application of the electron density force to chemical reactivity.
- Author
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Morell C, Ayers PW, Grand A, and Chermette H
- Abstract
In this paper the concept of force experienced by the electron density is applied to chemical reactivity. The force is based upon the gradient of a local chemical potential. Closely related concepts such as force field lines and local electron flux are defined to provide insight in chemical reactivity. The time evolution of a molecular site density is also proposed. From the divergence of the force, the nucleophilic and electrophilic behaviour of atomic sites are characterized. Finally, the relations between the force and local conceptual DFT descriptors are also given., (This journal is © the Owner Societies 2011)
- Published
- 2011
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25. A versatile precursor for non-aqueous neptunyl(V) chemistry.
- Author
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Copping R, Mougel V, Petit S, Den Auwer C, Moisy P, and Mazzanti M
- Abstract
The polymeric complex [(NpO(2)Py(5))(KI(2)Py(2))](n) is prepared from dry "NpO(2)Cl" by anion exchange with potassium iodide in pyridine affording the first convenient starting material for the development of NpO(2)(+) coordination chemistry in anhydrous organic media., (© The Royal Society of Chemistry 2011)
- Published
- 2011
- Full Text
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26. New insights into the acid mediated disproportionation of pentavalent uranyl.
- Author
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Mougel V, Biswas B, Pécaut J, and Mazzanti M
- Abstract
The reaction of benzoic acid with the uranyl(V) complex [(UO(2)Py(5))(KI(2)Py(2))] in pyridine leads to immediate disproportionation with formation of a hexanuclear U(IV) benzoate cluster, a bis-benzoate complex of uranyl(VI) and water.
- Published
- 2010
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27. Highly stable and soluble bis-aqua Gd, Nd, Yb complexes as potential bimodal MRI/NIR imaging agents.
- Author
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Tallec G, Imbert D, Fries PH, and Mazzanti M
- Abstract
A tripodal ligand based on the 8-hydroxyquinolinate binding unit yields a soluble and highly stable bis-hydrated Gd(3+) complex in water (pGd = 19.2(3)) with relaxivity change in the pH range 4.5-7.4 and Nd(3+), Yb(3+) analogues with sizeable NIR emission upon excitation at 370 nm providing a new architecture for the development of bimodal agents.
- Published
- 2010
- Full Text
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28. Structural and photophysical properties of trianionic nine-coordinated near-IR emitting 8-hydroxyquinoline-based complexes.
- Author
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Bozoklu G, Marchal C, Pécaut J, Imbert D, and Mazzanti M
- Subjects
- Anions, Crystallography, X-Ray, Erbium chemistry, Hydrogen Bonding, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Structure, Neodymium chemistry, Organometallic Compounds chemistry, Spectrophotometry, Infrared, Ytterbium chemistry, Light, Oxyquinoline chemistry
- Abstract
Two building blocks, 2-(1H-tetrazol-5-yl)quinoline-8-ol (8-hydroxyquinoline-2-tetrazole) (H(2)hqt) and 8-hydroxyquinoline-2-carboxylic acid (H(2)hqa) provide convenient dianionic tridentate O,N,N- and O,N,O-chelating units containing the 8-hydroxyquinoline chromophore. These ligands form tris-chelate tris-anionic complexes [Ln(hqa)(3)]K(3) and [Ln(hqt)(3)]K(3) in water at pH = 12. At lower pH partially protonated species are formed. The Nd(III), Yb(III) and Er(III) complexes of hqa, and hqt and the partially protonated complex [Nd(H(1/2)hqa)(3)](2)(Et(3)NH)(3).Et(3)NHOTf have been crystallised from methanol solution. The X-ray crystal structure ([Nd(hqa)(3)]K(3).7MeOH(∞)·MeOH, [Er(hqa)(3)]K(3).4MeOH(∞)·3MeOH and [Nd(hqt)(3)]K(3).5MeOH(∞)·MeOH) show a helical arrangement of both ligands with an "anti" geometry for hqa and a "syn" geometry for hqt. Only tris-chelate complexes are formed in water and 0.04 M methanol solutions for both ligands. A "syn" geometry is found for the partially protonated dimeric complexes which is preserved in methanol solution. A statistical distribution of "anti" and "syn" species is found for [Ln(hqa)(3)]K(3) complexes in solution while the major solution geometry of [Ln(hqt)(3)]K(3) complexes is "syn". Sizable near-IR emission quantum yields were measured for the [Ln(hqa)(3)]K(3) complexes in solid state (0.06%, 0.18%, 0.0051% for Nd(III), Yb(III) and Er(III) respectively) and in methanol (0.063%, 0.28%, 0.0019% for Nd(III), Yb(III) and Er(III) respectively). All the values of quantum yields obtained for the hqt complexes are 5-17% higher than those measured for the hqa complexes. The trianionic complexes present a high solubility in organic and aqueous solvents and a good resistance to ligand dissociation compared to neutral tris 8-hydroxyquinoline complexes.
- Published
- 2010
- Full Text
- View/download PDF
29. Hybrid nanocomposites of CdSe nanocrystals distributed in complexing thiophene-based copolymers.
- Author
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Aldakov D, Jiu T, Zagorska M, de Bettignies R, Jouneau PH, Pron A, and Chandezon F
- Abstract
Two types of conjugated polymers were prepared with the goal to blend them with rod-like CdSe nanocrystals. The polymers of the first type were synthesized through copolymerization of 3-octylthiophene and 3-methylene-ethylcarboxylate-thiophene to give polythiophene with solubilizing alkyl groups and methylene ester functional groups (PE series). Post-polymerization hydrolysis of the ester type polymers yielded acid-type ones (PA series). Photoluminescence (PL) quenching in these polymers induced by their titration with nanocrystals solution was chosen as a measure of the polymer-nanocrystal interactions. PL of polyacids turned out to be more efficiently quenched as compared to the case of polymers with ester groups which was interpreted as an indication of better electronic communication between the hybrid components. Infrared (IR) spectroscopy confirmed efficient coordination of the carboxylic groups to CdSe. Voltammetric studies combined with UV-vis spectroelectrochemistry enabled the determination of energy levels alignment of the molecular composite components which turned out to be of staggered type-appropriate for photovoltaic applications. The obtained blends of polyacids with CdSe nanocrystals, when studied by transmission electron microscopy (TEM), revealed the presence of an interpenetrating network in which nanorods were homogeneously distributed within the polymer matrix without any indication of agglomerates formation both on the film surface and in the cross-section. Blends with polymers containing ester groups were less homogeneous which could be explained by weaker polymer-nanocrystals interactions. Photovoltaic cells based on these hybrid materials are also discussed.
- Published
- 2010
- Full Text
- View/download PDF
30. Ligand assisted cleavage of uranium oxo-clusters.
- Author
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Nocton G, Pécaut J, Filinchuk Y, and Mazzanti M
- Abstract
Dibenzoylmethanate replaces the bridging triflate ligands in uranium triflate polyoxo-clusters and cleaves the U(12)O(20) core yielding the new [U(6)O(4)(OH)(4)(eta-dbm)(12)] dibenzoylmethanate (dbm(-)) cluster which slowly dissociates into a monomeric complex. This reactivity demonstrates the importance of bridging ligands in stabilizing uranium polyoxo-clusters.
- Published
- 2010
- Full Text
- View/download PDF
31. Is an elementary reaction step really elementary? Theoretical decomposition of asynchronous concerted mechanisms.
- Author
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Labet V, Morell C, Toro-Labbé A, and Grand A
- Subjects
- Algorithms, Electrons, Thermodynamics, Models, Molecular
- Abstract
In this paper the primitive process concept is used to reproduce and explain the potential energy profile of an asynchronous concerted mechanism. The number of primitive processes constituting such a mechanism can be deduced from the study of the influence of the number of electrons on the potential energy profile of the elementary step. The study of a particular example indicates that the position of the transition states of the primitive processes constituting an asynchronous concerted mechanism seems not to be affected by the number of electrons in the system. This implies that the maximum hardness and minimum electrophilicity principles are valid for primitive processes but not for asynchronous concerted mechanisms. It appears that a potential energy profile with a shoulder before the transition state, and a reaction force profile with more than two extrema together with a hardness profile presenting a minimum shifted with respect to the transition state are thus indicators of the presence of an asynchronous concerted mechanism.
- Published
- 2010
- Full Text
- View/download PDF
32. UVA-induced cyclobutane pyrimidine dimers in DNA: a direct photochemical mechanism?
- Author
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Mouret S, Philippe C, Gracia-Chantegrel J, Banyasz A, Karpati S, Markovitsi D, and Douki T
- Subjects
- Animals, Cattle, Cells, Cultured, Clostridium perfringens genetics, DNA isolation & purification, DNA, Bacterial chemistry, DNA, Bacterial isolation & purification, Genome, Bacterial radiation effects, Humans, Keratinocytes metabolism, Keratinocytes radiation effects, Micrococcus luteus genetics, Photochemistry, DNA chemistry, DNA Damage radiation effects, Pyrimidine Dimers chemistry, Ultraviolet Rays adverse effects
- Abstract
The carcinogenic action of UVA radiation is commonly attributed to DNA oxidation mediated by endogenous photosensitisers. Yet, it was recently shown that cyclobutane pyrimidine dimers (CPD), well known for their involvement in UVB genotoxicity, are produced in larger yield than oxidative lesions in UVA-irradiated cells and skin. In the present work, we gathered mechanistic information on this photoreaction by comparing formation of all possible bipyrimidine photoproducts upon UVA irradiation of cells, purified genomic DNA and dA(20):dT(20) oligonucleotide duplex. We observed that the distribution of photoproducts, characterized by the sole formation of CPD and the absence of (6-4) photoproducts was similar in the three types of samples. The CPD involving two thymines represented 90% of the amount of photoproducts. Moreover, the yields of formation of the DNA lesions were similar in cells and isolated DNA. In addition, the effect of the wavelength of the incident photons was found to be the same in isolated DNA and cells. This set of data shows that UVA-induced cyclobutane pyrimidine dimers are formed via a direct photochemical mechanism, without mediation of a cellular photosensitiser. This is possible because the double-stranded structure increases the capacity of DNA bases to absorb UVA photons, as evidenced in the case of the oligomer dA(20):dT(20). These results emphasize the need to consider UVA in the carcinogenic effects of sunlight. An efficient photoprotection is needed that can only be complete by completely blocking incident photons, rather than by systemic approaches such as antioxidant supplementation.
- Published
- 2010
- Full Text
- View/download PDF
33. PerR vs OhrR: selective peroxide sensing in Bacillus subtilis.
- Author
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Duarte V and Latour JM
- Subjects
- Models, Molecular, Bacillus subtilis physiology, Bacterial Proteins physiology, Peroxides metabolism, Repressor Proteins physiology
- Abstract
Bacteria adapt to elevated levels of reactive oxygen species (ROS) by increasing the expression of detoxification enzymes and repair proteins. These defences are regulated by transcription factors that activate specific genes in response to ROS. In Bacillus subtilis, the adaptive response to peroxide stress is mainly under control of three proteins: sigma(B), PerR and OhrR. sigma(B) is a general stress response transcription factor. PerR is a dimeric zinc protein with a regulatory site that coordinates either a Fe(2+) or a Mn(2+) metal ion. In the presence of iron, PerR mediates strong induction of the perR regulon in response to hydrogen peroxide (H(2)O(2)). In contrast to PerR, the OhrR protein is weakly activated by H(2)O(2) but it shows a much higher reactivity for organic hydroperoxides. OhrR controls the expression of a thiol-dependent peroxidase that reduces organic hydroperoxides into their corresponding alcohols. In this review we emphasis peroxide sensing mechanisms for both proteins, focusing on recent biochemical and structural data.
- Published
- 2010
- Full Text
- View/download PDF
34. Gadolinium(III) complexes of 1,4,7-triazacyclononane based picolinate ligands: simultaneous optimization of water exchange kinetics and electronic relaxation.
- Author
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Nonat A, Giraud M, Gateau C, Fries PH, Helm L, and Mazzanti M
- Subjects
- Kinetics, Lanthanoid Series Elements chemistry, Ligands, Magnetic Resonance Spectroscopy, Potentiometry, Spectrometry, Fluorescence, Gadolinium chemistry, Heterocyclic Compounds chemistry, Picolinic Acids chemistry, Protons, Water chemistry
- Abstract
The two new tripodal picolinate H(3)ebpatcn (1-carboxyethyl-4,7-bis((6-carboxypyridin-2-yl)methyl)-1,4,7-triazacyclononane) and H(4)pbpatcn (1-methylphosphonic-acid-4,7-bis((6-carboxypyridin-2-yl)methyl)-1,4,7-triazacyclononane) ligands based on the 1,4,7-triazacyclononane anchor were prepared and their lanthanide complexes were characterized by NMR, fluorescence and potentiometric studies. The [Gd(ebpatcn)(H(2)O)] complex displays a relaxivity of r(1) = 4.68 mM(-1) s(-1) at 45 MHz and 298 K, whereas r(1) = 4.55 mM(-1) s(-1) was measured for [Gd(Hpbpatcn)(H(2)O)] under the same conditions. The modified scaffold of the ligands with respect to the previously reported H(3)bpatcn (1-(carboxymethyl)-4,7-bis[(6-carboxypyridin-2-yl)methyl]-1,4,7-triazacyclononane) leads to an optimization of the properties of these gadolinium complexes. The replacement of an acetate binding group of the H(3)bpatcn ligand with a propionate group (H(3)ebpatcn) or a phosphonate group (H(4)pbpatcn) leads to a faster exchange rate of the coordinated water molecule in both mono-aquo gadolinium complexes. The resulting water exchange rate is optimized for the future design of high relaxivity macromolecular gadolinium based contrast agents with a value measured by O(17) NMRD of k(ex) = 34 x 10(6) s(-1) for [Gd(Hpbpatcn)(H(2)O)] falling in the range of optimum values of (30 to 50) x 10(6) s(-1) predicted by the SBM theory. The water exchange rate k(ex)(298) = 86 x 10(6) s(-1) of the complex [Gd(ebpatcn)(H(2)O)] is the fastest reported in the literature for a neutral complex with only one inner-sphere water molecule. The relatively high stability of these modified gadolinium complexes (pGd = 14.1 for Gd(pbpatcn) and 13.1 for Gd(ebpatcn)) is similar to that of the [Gd(bpatcn)(H(2)O)] complex (pGd = 13.6). The high luminescence efficiency is also retained for the terbium complex. However, whereas the longitudinal electronic spin relaxation time keeps a value for [Gd(ebpatcn)(H(2)O)], which is long enough not to affect the relaxivity in macromolecular complexes (transient ZFS amplitude Delta(2) [10(20) rad(2) s(-2)] = 0.39), the O(17) relaxation and the (1)H NMRD indicate a rather fast electron spin relaxation for the phosphonate containing complex (Delta(2) [10(20) rad(2) s(-2)] = 1.3).
- Published
- 2009
- Full Text
- View/download PDF
35. Minimum electrophilicity principle: an analysis based upon the variation of both chemical potential and absolute hardness.
- Author
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Morell C, Labet V, Grand A, and Chermette H
- Abstract
In this work, the minimum electrophilicity principle (MEP), assessed by either the electrophilicity power or the DeltaNmax, is mathematically analysed through the variation of both chemical potential and chemical hardness. It appears that the decrease of the electrophilicity power and the decrease of the DeltaNmax are ruled by similar expressions in which both the chemical potential and the absolute hardness should increase. A reduced expression at constant chemical potential shows that the MEP and the maximum hardness principle are equivalent. However it pops up from the monitoring of chemical processes such as bond formation and redox reactions that the variation of the chemical potential is the most important term.
- Published
- 2009
- Full Text
- View/download PDF
36. Pentavalent uranyl stabilized by a dianionic bulky tetradentate ligand.
- Author
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Horeglad P, Nocton G, Filinchuk Y, Pécaut J, and Mazzanti M
- Abstract
A pentavalent uranyl complex supported by a bulky dianionic tetradentate (ONNO)-type salan ligand has been prepared by direct synthesis from the iodide precursor {[UO(2)Py(5)][KI(2)Py(2)]}(n), and displays high stability towards disproportionation and ligand dissociation but reactivity towards oxidizing substrates.
- Published
- 2009
- Full Text
- View/download PDF
37. Mechanism of nitric oxide induced deamination of cytosine.
- Author
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Labet V, Grand A, Morell C, Cadet J, and Eriksson LA
- Subjects
- Catalysis, Deamination drug effects, Hydrogen-Ion Concentration, Isomerism, Quantum Theory, Thermodynamics, Water chemistry, Cytosine chemistry, Nitric Oxide chemistry, Nitric Oxide pharmacology
- Abstract
A five-step mechanism is proposed for the NO -induced deamination of cytosine. It has been investigated using DFT calculations, including both explicit water molecules and a bulk solvent model to mimic an aqueous environment. According to this mechanism, cytosine first undergoes tautomerization with the assistance of a water molecule from the bulk. A NO(+) cation produced by the autooxidation of NO is subsequently added to the exocyclic imino group of the cytosine imine tautomer. The resulting adduct is able to undergo a tautomerization step with the participation of a water molecule to produce a cytosine in which a -N(2)OH group is attached to carbon C4. Protonation of the oxygen of the latter gives a water molecule which dissociates instantaneously, leading to a pyrimidinic diazonium cation. This constitutes the rate-determining step of the mechanism with an activation free energy of 92.6 kJ mol(-1). The last step, which is highly exergonic, represents the driving force of the reaction. It is the substitution of the -N(2)(+) terminal group by a water molecule which simultaneously allows the transfer of one of the two hydrogens to the bulk. Thus, the two products of the reaction consist of a nitrogen molecule and the enol tautomer of uracil in equilibrium with the keto form.
- Published
- 2009
- Full Text
- View/download PDF
38. Rationalization of Diels-Alder reactions through the use of the dual reactivity descriptor Deltaf(r).
- Author
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Morell C, Ayers PW, Grand A, Gutiérrez-Oliva S, and Toro-Labbé A
- Abstract
In this work, the dual descriptor of chemical reactivity, an electronic density-based index, is used to study both the regioselectivity and the stereoselectivity of Diels-Alder reactions. The descriptor has been designed to simultaneously delineate the nucleophilic and electrophilic sites within a molecule. Subsequent pairing between the nucleophilic and electrophilic regions of the reagents predicts the major adducts in all cases studied. Specifically, the descriptor predicts the generation of a ortho-regioisomer when a diene monosubstitued at position 1 by an Electron Donating Group (EDG)/Electron Withdrawing Group (EWG), reacts with a dienophile monosubtituted by an EWG/EDG. Under the same conditions, if the diene is monosubstituted by either an EWG or an EDG at position 2, formation of the para-oriented adduct is predicted. This approach also provides insight into the stereoselectivity. For example, secondary interactions between the non-reactive regions of the reactants explain why the endo stereoisomer is preferred.
- Published
- 2008
- Full Text
- View/download PDF
39. Determination of the rate of a fast exchanging coordinated molecule in a lanthanide(III) complex by proton NMR.
- Author
-
Fries PH, Giraud M, and Belorizky E
- Abstract
An elementary procedure is proposed and applied to study the exchange rate of a solvent or solute molecule bound to a complexed paramagnetic Ln(III) ion, other than Gd(III), from the measured longitudinal and transverse relaxation rates and paramagnetic resonance frequency shift at a given temperature.
- Published
- 2008
- Full Text
- View/download PDF
40. A microarray to measure repair of damaged plasmids by cell lysates.
- Author
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Millau JF, Raffin AL, Caillat S, Claudet C, Arras G, Ugolin N, Douki T, Ravanat JL, Breton J, Oddos T, Dumontet C, Sarasin A, Chevillard S, Favier A, and Sauvaigo S
- Subjects
- Cell Line, Transformed, HeLa Cells, Humans, Spectrometry, Fluorescence, DNA Repair, Plasmids
- Abstract
DNA repair mechanisms constitute major defences against agents that cause cancer, degenerative disease and aging. Different repair systems cooperate to maintain the integrity of genetic information. Investigations of DNA repair involvement in human pathology require an efficient tool that takes into account the variety and complexity of repair systems. We have developed a highly sensitive damaged plasmid microarray to quantify cell lysate excision/synthesis (ES) capacities using small amounts of proteins. This microsystem is based on efficient immobilization and conservation on hydrogel coated glass slides of plasmid DNA damaged with a panel of genotoxic agents. Fluorescent signals are generated from incorporation of labelled dNTPs by DNA excision-repair synthesis mechanisms at plasmid sites. Highly precise DNA repair phenotypes i.e. simultaneous quantitative measures of ES capacities toward seven lesions repaired by distinct repair pathways, are obtained. Applied to the characterization of xeroderma pigmentosum (XP) cells at basal level and in response to a low dose of UVB irradiation, the assay showed the multifunctional role of different XP proteins in cell protection against all types of damage. On the other hand, measurement of the ES of peripheral blood mononuclear cells from six donors revealed significant diversity between individuals. Our results illustrate the power of such a parallelized approach with high potential for several applications including the discovery of new cancer biomarkers and the screening of chemical agents modulating DNA repair systems.
- Published
- 2008
- Full Text
- View/download PDF
41. Formation of cross-linked adducts between guanine and thymine mediated by hydroxyl radical and one-electron oxidation: a theoretical study.
- Author
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Labet V, Morell C, Grand A, Cadet J, Cimino P, and Barone V
- Subjects
- Gases chemistry, Kinetics, Models, Molecular, Molecular Structure, Oxidation-Reduction, Thermodynamics, Electrons, Guanine chemistry, Hydroxyl Radical chemistry, Thymine chemistry
- Abstract
The role of local geometric and stereo-electronic effects in tuning the preference for different cross-linked adducts between thymine and purinic bases has been analyzed by a computational approach rooted in density functional theory. Our study points out that G--T and T--G tandem lesions are produced according to the same mechanism as A--T and T--A intrastrand adducts, and in both cases purine--T adducts are preferred rather than the opposite sequences. Moreover, use of conceptual DFT tools allows the rationalization of the preferential occurrence of G--T and T--G tandem lesions in place of their A--T and T--A counterparts.
- Published
- 2008
- Full Text
- View/download PDF
42. Effect of (5'S)-5',8-cyclo-2'-deoxyadenosine on the conformation of di and trinucleotides. A NMR and DFT study.
- Author
-
Karwowski BT, Gaillard J, Grand A, and Cadet J
- Subjects
- Carbohydrates chemistry, Hydroxylation, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Conformation, Stereoisomerism, Deoxyadenosines chemistry, Oligodeoxyribonucleotides chemistry
- Abstract
5',8-Purine cyclonucleosides constitute an important class of oxidatively generated tandem lesions whose formation involves initial hydroxyl radical-mediated hydrogen atom abstraction from the 5-hydroxymethyl group of 2-deoxyribose followed by intramolecular cyclization. The present study deals with the synthesis of the 5'S diastereomer of 5',8-cyclo-2'-deoxyadenosine containing di- and tri-oligodeoxynucleotides as an attempt to delineate the conformational changes induced in the DNA fragments by the presence of a rigid modified nucleoside. For this purpose, extensive 1D and 2D NMR measurements that were completed by DFT theoretical calculations were performed. As a striking result, it was found that the covalent bond between C(5') and C(8) in the investigated purine cyclonucleoside induces an unusual West ((0)T(1)) conformation of the furanose ring. Thus it can be postulated that the rigid structure of the tandem lesion would strongly perturb the global geometry of oligonucleotides at the site of the modification and therefore affect the enzymatic activity of DNA polymerases and repair enzymes.
- Published
- 2008
- Full Text
- View/download PDF
43. A flexible tripodal ligand linking octametallic terbium rings into luminescent polymeric chains.
- Author
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Chen XY, Marchal C, Filinchuk Y, Imbert D, and Mazzanti M
- Abstract
Six bidentate building blocks have been used to form a tripodal ligand with a flexible C3 symmetric spacer to direct the assembly of large octametallic clusters covalently linked to form a 1-D highly luminescent terbium tube-like polymer.
- Published
- 2008
- Full Text
- View/download PDF
44. SPR imaging for label-free multiplexed analyses of DNA N-glycosylase interactions with damaged DNA duplexes.
- Author
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Corne C, Fiche JB, Gasparutto D, Cunin V, Suraniti E, Buhot A, Fuchs J, Calemczuk R, Livache T, and Favier A
- Subjects
- Animals, Base Pair Mismatch, DNA Repair Enzymes, Humans, Oligonucleotide Array Sequence Analysis, DNA Damage, DNA Glycosylases metabolism, DNA Repair, Surface Plasmon Resonance
- Abstract
Base excision repair (BER) is the major mechanism for the correction of damaged nucleobases resulting from the alkylation and oxidation of DNA. The first step in the BER pathway consists of excision of the abnormal base by several specific DNA N-glycosylases. A decrease in BER activity was found to be related to an increased risk of carcinogenesis and aging. To investigate BER activities we set up a new device for DNA repair analysis based on surface plasmon resonance imaging (SPRi). Oligonucleotides bearing an abnormal nucleoside, namely 8-oxo-7,8-dihydro-2'-deoxyguanosine and (5'S)-5',8-cyclopurine-2'-deoxynucleoside, were grafted by a pyrrole electro-copolymerization process on a glass prism coated with a gold layer. The latter label-free DNA sensor chip permits the detection of N-glycosylase/AP-lyase activity as well as the binding of repair proteins to DNA damage without cleavage activity. Thus, the Fapy DNA N-glycosylase (Fpg) protein is shown as expected to bind and then cleave its natural substrate, namely 8-oxo-7,8-dihydro-guanine, together with the resulting abasic site. Using the current SPR imaging-based DNA array we observed an original binding activity of Fpg towards the (5'S)-5',8-cyclodAdenosine residue. These results altogether show that SPR imaging may be used to simultaneously and specifically detect recognition and excision of several damaged DNA nucleobases, and constitutes an interesting technique to screen inhibitors of DNA repair proteins.
- Published
- 2008
- Full Text
- View/download PDF
45. Layer-by-layer assembled composite films of side-functionalized poly(3-hexylthiophene) and CdSe nanocrystals: electrochemical, spectroelectrochemical and photovoltaic properties.
- Author
-
De Girolamo J, Reiss P, Zagorska M, De Bettignies R, Bailly S, Mevellec JY, Lefrant S, Travers JP, and Pron A
- Subjects
- Crystallization, Electric Conductivity, Hydrogen Bonding, Polymers, Thiophenes chemistry, Cadmium Compounds chemistry, Electrochemistry methods, Nanoparticles, Nanotechnology, Photochemistry methods, Selenium Compounds chemistry, Spectrum Analysis methods
- Abstract
Regioregular poly(3-hexylthiophene) containing one diaminopyrimidine side group per ten repeat units (P3HT-co-P3(ODAP)HT) can form molecular composites with 1-(6-mercaptohexyl)thymine capped CdSe nanocrystals (CdSe(MHT)) via hydrogen bonds directed molecular recognition. Here we report complementary spectroscopic, electrochemical and spectroelectrochemical investigations of both the functionalized poly(thiophene) and its composite with the nanocrystals, the latter being fabricated using the layer-by-layer (LbL) deposition technique. UV-Vis-NIR and Raman spectroelectrochemical investigations unequivocally show that the onset of the first anodic peak in the cyclic voltammogram of the copolymer can be attributed to the oxidation of the pi-conjugated backbone in the polymer chains. For this reason, it is possible to determine the width and the position of its band gap (corresponding to the pi-pi* transition) by UV-Vis spectroscopy combined with cyclic voltammetry. These studies show that the polymer exhibits a slightly larger band gap with the HOMO level insignificantly lower in energy (by 0.03 eV) as compared to the case of regioregular poly(3-hexylthiophene) of comparable degree of polymerization. Hydrogen bond interactions of the polymer with CdSe(MHT) in the molecular composite result in a hypsochromic shift of the band corresponding to the pi-pi* transition from 504 nm to 488 nm. This can be taken as a spectroscopic manifestation of the conformational changes induced by shortening of the conjugation length. The observed spectral modifications are consistent with electrochemically determined lowering of the polymer HOMO level (from -4.91 eV in the pure polymer to -4.99 eV in the composite). Cyclic voltammetry studies supported by spectroelectrochemistry also show that the redox stability of CdSe(MHT) in the molecular composite with P3HT-co-P3(ODAP)HT is lower than that determined for stearate-capped nanocrystals. Their irreversible oxidation starts at E = +0.7 V vs. Ag/0.1 M Ag(+)i.e. at potentials by ca. 0.3 V lower than the oxidation of stearate stabilized CdSe nanocrystals of the same size. We show that-despite these modifications-the alignment of the HOMO and LUMO levels of the composite components remains appropriate for its use in hybrid solar cells, which is demonstrated by the photovoltaic effect observed for the LbL-processed composite sandwiched between two electrodes.
- Published
- 2008
- Full Text
- View/download PDF
46. Responsive viscoelastic giant lipid vesicles filled with a poly(N-isopropylacrylamide) artificial cytoskeleton.
- Author
-
Campillo C, Pépin-Donat B, and Viallat A
- Abstract
Responsive giant lipid vesicles filled with aqueous PolyNipam sol (SFV) or gel (GFV) were prepared by ultra-violet polymerisation performed in situ. Upon crossing the lower critical transition temperature of PolyNipam, SFVs and GFVs undergo a significant change of their structural and mechanical properties or a drastic volume transition, respectively. Rheometric and micropipette experiments show that both internal viscosity of SFVs and internal shear modulus of GFVs are tunable over several orders of magnitude and lie in the range observed for living cells. Moreover, the vesicle membrane is strongly bound to the internal polymer medium, making these systems interesting for mimicking the basic mechanical behaviour of passive living cells.
- Published
- 2007
- Full Text
- View/download PDF
47. Roles of vitamins B5, B8, B9, B12 and molybdenum cofactor at cellular and organismal levels.
- Author
-
Rébeillé F, Ravanel S, Marquet A, Mendel RR, Webb ME, Smith AG, and Warren MJ
- Subjects
- Molecular Structure, Molybdenum Cofactors, Pteridines, Coenzymes physiology, Metalloproteins physiology, Pantothenic Acid physiology, Vitamin B 12 physiology, Vitamin B Complex physiology
- Abstract
Many efforts have been made in recent decades to understand how coenzymes, including vitamins, are synthesised in organisms. In the present review, we describe the most recent findings about the biological roles of five coenzymes: folate (vitamin B9), pantothenate (vitamin B5), cobalamin (vitamin B12), biotin (vitamin B8) and molybdenum cofactor (Moco). In the first part, we will emphasise their biological functions, including the specific roles found in some organisms. In the second part we will present some nutritional aspects and potential strategies to enhance the cofactor contents in organisms of interest.
- Published
- 2007
- Full Text
- View/download PDF
48. Amine-induced growth of an In2O3 shell on colloidal InP nanocrystals.
- Author
-
Protière M and Reiss P
- Subjects
- Microscopy, Electron, Transmission, Spectrophotometry, Ultraviolet, Amines chemistry, Colloids, Indium chemistry, Nanoparticles
- Abstract
A simple and rapid method for the growth of an In2O3 shell on colloidal InP nanocrystals is described, increasing their fluorescence efficiency by one order of magnitude.
- Published
- 2007
- Full Text
- View/download PDF
49. X-ray photoreduction of a di(mu-oxo)Mn(III)Mn(IV) complex occurs at temperatures as low as 20 K.
- Author
-
Dubois L, Jacquamet L, Pécaut J, and Latour JM
- Subjects
- Cold Temperature, Temperature, X-Rays, Manganese, Organometallic Compounds chemistry, Photochemistry
- Abstract
Full reduction of the Mn(III)(mu-O)2Mn(IV) core to Mn(II)(mu-OH2)2Mn(II) is observed upon irradiation by an X-ray beam at ca. 20 K.
- Published
- 2006
- Full Text
- View/download PDF
50. Radiation-induced formation of DNA intrastrand crosslinks between thymine and adenine bases: A theoretical approach.
- Author
-
Xerri B, Morell C, Grand A, Cadet J, Cimino P, and Barone V
- Subjects
- Kinetics, Models, Molecular, Thermodynamics, Adenine chemistry, DNA chemistry, DNA radiation effects, Models, Chemical, Nucleic Acid Conformation radiation effects, Thymine chemistry
- Abstract
The role of local geometric and stereo-electronic effects in tuning the radiation-induced formation of intrastrand crosslinks between adenine and thymine has been analyzed by a computational approach rooted in density functional theory. Our study points out that together with steric accessibility, stereo-electronic effects play a major role in determining the reaction mechanism and the observed predominance of the thymine-adenine lesion over the opposite sequence isomer.
- Published
- 2006
- Full Text
- View/download PDF
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