118 results on '"McCarthy, James"'
Search Results
2. Maintenance of acetabular correction following PAO: a multicenter study comparing stainless-steel and titanium screws.
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Zhao, Lei, Uchtman, Molly, Aretakis, Alexander, Selberg, Courtney, McCarthy, James J, and Whitlock, Patrick W
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STAINLESS steel ,TITANIUM ,OSTEOTOMY - Abstract
Stainless-steel screws are commonly used for fragment fixation during periacetabular osteotomy (PAO) at our institutions. Titanium is reserved for patients with documented nickel allergies. Titanium screws possess a significantly lower Young's modulus than stainless steel and, therefore, potentially less resistance to physiologic loading. Thus, we hypothesized that the use of titanium screws might be associated with changes in acetabular correction prior to healing. The aim of this study was to compare the maintenance of acetabular correction following PAO using stainless-steel or titanium screws. A documented nickel allergy was confirmed with an allergy specialist. Patients' age at surgery, gender and BMI were collected. The lateral center–edge angle of Wiberg (LCEA), medial center–edge angle (MCEA), anterior wall index (AWI), posterior wall index (PWI) and Tönnis angle were measured. The delta value for radiographic parameters was calculated as the difference between values immediately post-operation and at 6 months post-operation. Only age at surgery (P < 0.001) and the pre-operative LCEA (P = 0.013) were significantly different between groups (Tables I and II). The remaining pre- and post-operative radiological measurements were similar (Table II). Comparison of delta values at 6 months follow-up indicated no significant differences between screw types (Table III). No patients in the titanium group had a trans-iliac retrograde screw included in their construct (P = 0.003). All patients healed from their osteotomies. The use of titanium screws in patients with an allergy to nickel was not associated with differences in acetabular correction or the rate of osseous union rates despite its lower inherent mechanical properties. [ABSTRACT FROM AUTHOR]
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- 2024
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3. Characterizing the Blood-Stage Antimalarial Activity of Tafenoquine in Healthy Volunteers Experimentally Infected With Plasmodium falciparum.
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Barber, Bridget E, Abd-Rahman, Azrin N, Webster, Rebecca, Potter, Adam J, Llewellyn, Stacey, Marquart, Louise, Sahai, Nischal, Leelasena, Indika, Birrell, Geoffrey W, Edstein, Michael D, Shanks, G Dennis, Wesche, David, Moehrle, Joerg J, and McCarthy, James S
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MALARIA prevention ,PROTOZOA ,PARASITEMIA ,HEMOGLOBINS ,PUBLIC health ,DRUG administration ,PEROXIDES ,RESEARCH funding ,ANTIMALARIALS ,INBORN errors of metabolism ,OXIDOREDUCTASES ,POLYMERASE chain reaction - Abstract
Background The long-acting 8-aminoquinoline tafenoquine may be a good candidate for mass drug administration if it exhibits sufficient blood-stage antimalarial activity at doses low enough to be tolerated by glucose 6-phosphate dehydrogenase (G6PD)–deficient individuals. Methods Healthy adults with normal levels of G6PD were inoculated with Plasmodium falciparum 3D7-infected erythrocytes on day 0. Different single oral doses of tafenoquine were administered on day 8. Parasitemia and concentrations of tafenoquine and the 5,6-orthoquinone metabolite in plasma/whole blood/urine were measured and standard safety assessments performed. Curative artemether-lumefantrine therapy was administered if parasite regrowth occurred, or on day 48 ± 2. Outcomes were parasite clearance kinetics, pharmacokinetic and pharmacokinetic/pharmacodynamic (PK/PD) parameters from modelling, and dose simulations in a theoretical endemic population. Results Twelve participants were inoculated and administered 200 mg (n = 3), 300 mg (n = 4), 400 mg (n = 2), or 600 mg (n = 3) tafenoquine. The parasite clearance half-life with 400 mg or 600 mg (5.4 hours and 4.2 hours, respectively) was faster than with 200 mg or 300 mg (11.8 hours and 9.6 hours, respectively). Parasite regrowth occurred after dosing with 200 mg (3/3 participants) and 300 mg (3/4 participants) but not after 400 mg or 600 mg. Simulations using the PK/PD model predicted that 460 mg and 540 mg would clear parasitaemia by a factor of 10
6 and 109 , respectively, in a 60-kg adult. Conclusions Although a single dose of tafenoquine exhibits potent P. falciparum blood-stage antimalarial activity, the estimated doses to effectively clear asexual parasitemia will require prior screening to exclude G6PD deficiency. Clinical Trials Registration. Australian and New Zealand Clinical Trials Registry (ACTRN12620000995976). [ABSTRACT FROM AUTHOR]- Published
- 2023
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4. Transmission Blocking Activity of Low-dose Tafenoquine in Healthy Volunteers Experimentally Infected With Plasmodium falciparum.
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Webster, Rebecca, Mitchell, Hayley, Peters, Jenny M, Heunis, Juanita, O'Neill, Brighid, Gower, Jeremy, Lynch, Sean, Jennings, Helen, Amante, Fiona H, Llewellyn, Stacey, Marquart, Louise, Potter, Adam J, Birrell, Geoffrey W, Edstein, Michael D, Shanks, G Dennis, McCarthy, James S, and Barber, Bridget E
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MALARIA prevention ,PREVENTION of infectious disease transmission ,MALARIA transmission ,ORAL drug administration ,TREATMENT effectiveness ,DESCRIPTIVE statistics ,RESEARCH funding ,ANTIMALARIALS ,MOSQUITOES - Abstract
Background Blocking the transmission of parasites from humans to mosquitoes is a key component of malaria control. Tafenoquine exhibits activity against all stages of the malaria parasite and may have utility as a transmission blocking agent. We aimed to characterize the transmission blocking activity of low-dose tafenoquine. Methods Healthy adults were inoculated with Plasmodium falciparum 3D7-infected erythrocytes on day 0. Piperaquine was administered on days 9 and 11 to clear asexual parasitemia while allowing gametocyte development. A single 50-mg oral dose of tafenoquine was administered on day 25. Transmission was determined by enriched membrane feeding assays predose and at 1, 4, and 7 days postdose. Artemether-lumefantrine was administered following the final assay. Outcomes were the reduction in mosquito infection and gametocytemia after tafenoquine and safety parameters. Results Six participants were enrolled, and all were infective to mosquitoes before tafenoquine, with a median 86% (range, 22–98) of mosquitoes positive for oocysts and 57% (range, 4–92) positive for sporozoites. By day 4 after tafenoquine, the oocyst and sporozoite positivity rate had reduced by a median 35% (interquartile range [IQR]: 16–46) and 52% (IQR: 40–62), respectively, and by day 7, 81% (IQR 36–92) and 77% (IQR 52–98), respectively. The decline in gametocyte density after tafenoquine was not significant. No significant participant safety concerns were identified. Conclusions Low-dose tafenoquine (50 mg) reduces P. falciparum transmission to mosquitoes, with a delay in effect. [ABSTRACT FROM AUTHOR]
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- 2023
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5. Early and late results of mitral valve repair with anterior leaflet patch augmentation.
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Kehara, Hiromu, Minakata, Kenji, McCarthy, James, Sunagawa, Gengo, Mangukia, Chirantan, Brann, Stacey, Zhao, Huaqing, Boova, Robert, and Toyoda, Yoshiya
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- 2022
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6. Antimalarial Activity of Artefenomel Against Asexual Parasites and Transmissible Gametocytes During Experimental Blood-Stage Plasmodium vivax Infection.
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Collins, Katharine A, Abd-Rahman, Azrin N, Marquart, Louise, Ballard, Emma, Gobeau, Nathalie, Griffin, Paul, Chalon, Stephan, Möhrle, Jörg J, and McCarthy, James S
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PLASMODIUM vivax ,CLINICAL trial registries ,GERM cells ,PARASITES ,MALARIA prevention ,TRYPANOSOMA cruzi ,TRYPANOSOMA ,DRUG therapy for malaria ,FOLIC acid antagonists ,PROTOZOA ,RESEARCH ,ANIMAL experimentation ,RESEARCH methodology ,EVALUATION research ,MALARIA ,HYDROCARBONS ,PEROXIDES ,COMPARATIVE studies ,RESEARCH funding ,ANTIMALARIALS ,MOSQUITOES ,PHARMACODYNAMICS - Abstract
Background: Interventions that effectively target Plasmodium vivax are critical for the future control and elimination of malaria. We conducted a P. vivax volunteer infection study to characterize the antimalarial activity of artefenomel, a new drug candidate.Methods: Eight healthy, malaria-naive participants were intravenously inoculated with blood-stage P. vivax and subsequently received a single oral 200-mg dose of artefenomel. Blood samples were collected to monitor the development and clearance of parasitemia, and plasma artefenomel concentration. Mosquito feeding assays were conducted before artefenomel dosing to investigate parasite transmissibility.Results: Initial parasite clearance occurred in all participants after artefenomel administration (log10 parasite reduction ratio over 48 hours, 1.67; parasite clearance half-life, 8.67 hours). Recrudescence occurred in 7 participants 11-14 days after dosing. A minimum inhibitory concentration of 0.62 ng/mL and minimum parasiticidal concentration that achieves 90% of maximum effect of 0.83 ng/mL were estimated, and a single 300-mg dose was predicted to clear 109 parasites per milliliter with 95% certainty. Gametocytemia developed in all participants and was cleared 4-8 days after dosing. At peak gametocytemia, 75% of participants were infectious to mosquitoes.Conclusions: The in vivo antimalarial activity of artefenomel supports its further clinical development as a treatment for P. vivax malaria.Clinical Trials Registration: NCT02573857. [ABSTRACT FROM AUTHOR]- Published
- 2022
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7. Phylogenetic diversity and clustering in modern vegetation communities reflects habitat formation and age during the late Cenozoic in New Zealand.
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Heenan, Peter B, McCarthy, James K, Richardson, Sarah J, and McGlone, Matt S
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CENOZOIC Era , *HABITATS , *PLANTS , *PLANT communities , *CHEMICAL composition of plants , *OLD age - Abstract
Phylogenetic diversity analyses were used to interpret the timing and assembly of vegetation communities in temperate New Zealand. A data set comprising 1638 permanent vegetation plots provided plant-distributional data, and a plastid rbcL phylogenetic tree provided phylogenetic metrics. Mean crown age, standardized effect size of mean pairwise distance and standardized effect size of mean nearest taxon distance were analysed in relation to taxonomic groups (angiosperms, gymnosperms and pteridophytes), life form (woody angiosperms, non-woody angiosperms) and temperature and precipitation using generalized additive models. Angiosperms in South Island have a younger crown age than those in most North Island sites, and phylogenetic clustering is prevalent throughout. Angiosperms and pteridophytes from drier and cooler open-habitat communities in central and eastern South Island have younger crown ages and phylogenetic clustering compared to wetter and warmer closed-habitat communities of western South Island and North Island, with older crown ages and phylogenetic over-dispersion. Phylogenetic clustering is consistent with species-rich radiations that have diversified into newly available niches during the late Miocene to Plio-Pleistocene. Pteridophytes displayed less phylogenetic relatedness than angiosperms, reflecting their older crown ages. These findings are consistent with a view that northern New Zealand retained older lineages of subtropical origin during glaciations, whereas novel habitats in cool, dry climates in southern New Zealand facilitated more recent radiations. These results emphasize the strong legacy of history in the modern-day composition of plant communities. [ABSTRACT FROM AUTHOR]
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- 2022
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8. corona mortis: is it a rare and dangerous anomaly in adolescents undergoing periacteabular osteotomy?
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Hu, Alan W, McCarthy, James J, Breitenstein, Rachel, Uchtman, Molly, Emery, Kathleen H, and Whitlock, Patrick W
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HEMORRHAGE ,PELVIC surgery ,OSTEOTOMY ,MAGNETIC resonance imaging ,BLOOD transfusion - Abstract
The corona mortis (CM) is a vascular connection between the obturator and external iliac or internal epigastric vessels that has historically been identified as a source of hemorrhage in pelvic surgery. However, its frequency, location, proximity to the osteotomies performed, vascular contributions and impact on blood loss in patients undergoing periacetabular osteotomy (PAO) are unknown. We sought to identify the frequency, origin, location relative to osteotomies performed during surgery and impact on blood loss of the CM. Preoperative magnetic resonance imaging (MRI) of the hips of 28 adolescent patients (56 hips) undergoing PAO was retrospectively reviewed for the presence of a CM. When identifiable, the size, nature (arterial or venous), orientation, position relative to the iliopectineal eminence (IPE) and associated estimated blood loss (EBL) were recorded. 75% (21/28) of patients possessed an identifiable, ipsilateral CM to the site of PAO, 90% of which were venous and 10% arterial. The vessel was typically 8.3 ± 3.8 mm medial and 11.1 ± 5.3 mm caudal from the anterosuperomedial edge of the IPE. There was no significant difference in the amount of EBL (519 ± 260 versus 694 ± 369 ml) or need for post-op transfusions (1/21 versus 0/7) between patients who possessed a CM and those who did not, respectively (P = 0.21). CM was more prevalent in this study than previously reported. However, the presence of an ipsilateral CM was not associated with an increase in EBL or transfusion during routine PAO surgery using modern surgical techniques. [ABSTRACT FROM AUTHOR]
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- 2021
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9. Randomized Clinical Trial to Compare Plasmodium falciparum Gametocytemia and Infectivity After Blood-Stage or Mosquito Bite–Induced Controlled Malaria Infection.
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Alkema, Manon, Reuling, Isaie J, Jong, Gerdie M de, Lanke, Kjerstin, Coffeng, Luc E, Gemert, Geert-Jan van, van de Vegte-Bolmer, Marga, Mast, Quirijn de, Crevel, Reinout van, Ivinson, Karen, Ockenhouse, Christian F, McCarthy, James S, Sauerwein, Robert, Collins, Katharine A, and Bousema, Teun
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MALARIA prevention ,CLINICAL trials ,PLASMODIUM falciparum ,MOSQUITO control ,INFECTION control ,MOSQUITO nets - Abstract
Background For malaria elimination efforts, it is important to better understand parasite transmission to mosquitoes and develop models for early-clinical evaluation of transmission-blocking interventions. Methods In a randomized open-label trial, 24 participants were infected by bites from Plasmodium falciparum 3D7-infected mosquitoes (mosquito bite [MB]; n = 12) or by induced blood-stage malaria (IBSM) with the same parasite line (n = 12). After subcurative piperaquine treatment, asexual parasite and gametocytes kinetics were assessed, and mosquito feeding experiments were performed. Results Study procedures were well tolerated. The median peak gametocyte density was 1304/mL (interquartile range, 308–1607/mL) after IBSM, compared with 14/mL (10–64/mL) after MB inoculation (P < .001), despite similar peak asexual parasite densities (P = .48). Peak gametocyte density was correlated with preceding pfap2-g transcripts, indicative of gametocyte commitment (ρ = 0.62; P = .002). Direct feeding assays resulted in mosquito infections from 9 of 12 participants after IBSM versus 0 of 12 after MB inoculation (P < .001). Conclusions We observed a striking effect of inoculation method on gametocyte production, suggesting higher gametocyte commitment after IBSM. Our direct comparison of MB and IBSM establishes the controlled human malaria infection transmission model, using intravenous administration of P. falciparum –infected erythrocytes as a model for early-clinical evaluation of interventions that aim to interrupt malaria transmission. Clinical Trial Registration NCT03454048 [ABSTRACT FROM AUTHOR]
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- 2021
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10. Seeking an optimal dosing regimen for OZ439/DSM265 combination therapy for treating uncomplicated falciparum malaria.
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Dini, Saber, Zaloumis, Sophie G., Price, David J., Gobeau, Nathalie, Kümmel, Anne, Cherkaoui, Mohammed, Moehrle, Joerg J., McCarthy, James S., and Simpson, Julie A.
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PARASITE life cycles ,MALARIA ,DRUG interactions ,PLASMODIUM ,DRUG administration ,DRUG therapy for malaria ,PROTOZOA ,COMBINATION drug therapy ,HETEROCYCLIC compounds ,ANTIMALARIALS ,PROBABILITY theory - Abstract
Background: The efficacy of artemisinin-based combination therapies (ACTs), the first-line treatments for uncomplicated falciparum malaria, has been declining in malaria-endemic countries due to the emergence of malaria parasites resistant to these compounds. Novel alternative therapies are needed urgently to prevent the likely surge in morbidity and mortality due to failing ACTs.Objectives: This study investigates the efficacy of the combination of two novel drugs, OZ439 and DSM265, using a biologically informed within-host mathematical model.Methods: A within-host model was developed, which accounts for the differential killing of these compounds against different stages of the parasite's life cycle and accommodates the pharmacodynamic interaction between the drugs. Data of healthy volunteers infected with falciparum malaria collected from four trials (three that administered OZ439 and DSM265 alone, and the fourth a combination of OZ439 and DSM265) were analysed. Model parameters were estimated in a hierarchical Bayesian framework.Results: The posterior predictive simulations of our model predicted that 800 mg of OZ439 combined with 450 mg of DSM265, which are within the safe and tolerable dose range, can provide above 90% cure rates 42 days after drug administration.Conclusions: Our results show that the combination of OZ439 and DSM265 can be a promising alternative to replace ACTs. Our model can be used to inform future Phase 2 and 3 clinical trials of OZ439/DSM265, fast-tracking the deployment of this combination therapy in the regions where ACTs are failing. The dosing regimens that are shown to be efficacious and within safe and tolerable limits are suggested for future investigations. [ABSTRACT FROM AUTHOR]- Published
- 2021
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11. Parasite Viability as a Superior Measure of Antimalarial Drug Activity in Humans.
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Rebelo, Maria, Pawliw, Rebecca, Gower, Jeremy, Webb, Lachlan, Mitchell, Hayley, Pava, Zuleima, Watts, Rebecca E, Davenport, Miles P, McCarthy, James S, and Khoury, David S
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ARTEMISININ derivatives ,BLOOD parasites ,POLYMERASE chain reaction ,PARASITES ,TRYPANOSOMA cruzi ,PLASMODIUM falciparum ,DRUG therapy for malaria ,PROTOZOA ,RESEARCH ,MATHEMATICAL models ,RESEARCH methodology ,DRUG resistance ,EVALUATION research ,COMPARATIVE studies ,THEORY ,ANTIMALARIALS - Abstract
Background: Artemisinin derivatives are the leading class of antimalarial drugs due to their rapid onset of action and rapid clearance of circulating parasites. The parasite clearance half-life measures the rate of loss of parasites from blood after treatment, and this is currently used to assess antimalarial activity of novel agents and to monitor resistance. However, a number of recent studies have challenged the use of parasite clearance to measure drug activity, arguing that many circulating parasites may be nonviable.Methods: Plasmodium falciparum-infected subjects (n = 10) in a malaria volunteer infection study were administered a single dose of artesunate (2 mg/kg). Circulating parasite concentration was assessed by means of quantitative polymerase chain reaction (qPCR). Parasite viability after artesunate administration was estimated by mathematical modeling of the ex vivo growth of parasites collected from subjects.Results: We showed that in artemisinin-sensitive infection, viable parasites declined to <0.1% of baseline within 8 hours after artesunate administration, while the total number of circulating parasites measured with quantitative polymerase chain reaction remained unchanged. In artemisinin-resistant infections over the same interval, viable parasites declined to 51.4% (standard error of the mean, 4.6%) of baseline.Conclusions: These results demonstrate that in vivo drug activity of artesunate is faster than is indicated by the parasite clearance half-life. [ABSTRACT FROM AUTHOR]- Published
- 2021
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12. Dormant Plasmodium falciparum Parasites in Human Infections Following Artesunate Therapy.
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Peatey, Christopher, Chen, Nanhua, Gresty, Karryn, Anderson, Karen, Pickering, Paul, Watts, Rebecca, Gatton, Michelle L, McCarthy, James, and Cheng, Qin
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PLASMODIUM falciparum ,GENETIC mutation ,PARASITES ,ARTEMISININ ,BLOOD sampling - Abstract
Background: Artemisinin monotherapy of Plasmodium falciparum infection is frequently ineffective due to recrudescence. Artemisinin-induced dormancy, shown in vitro and in animal models, provides a plausible explanation. To date, direct evidence of artemisinin-induced dormancy in humans is lacking.Methods: Blood samples were collected from Plasmodium falciparum 3D7- or K13-infected participants before and 48-72 hours after single-dose artesunate (AS) treatment. Parasite morphology, molecular signature of dormancy, capability and dynamics of seeding in vitro cultures, and genetic mutations in the K13 gene were investigated.Results: Dormant parasites were observed in post-AS blood samples of 3D7- and K13-infected participants. The molecular signature of dormancy, an up-regulation of acetyl CoA carboxylase, was detected in 3D7 and K13 samples post-AS, but not in pre-AS samples. Posttreatment samples successfully seeded in vitro cultures, with a significant delay in time to reach 2% parasitemia compared to pretreatment samples.Conclusions: This study provides strong evidence for the presence of artemisinin-induced dormant parasites in P. falciparum infections. These parasites are a likely reservoir for recrudescent infection following artemisinin monotherapy and artemisinin combination therapy (ACT). Combination regimens that target dormant parasites or remain at therapeutic levels for a sufficient time to kill recovering parasites will likely improve efficacy of ACTs. [ABSTRACT FROM AUTHOR]- Published
- 2021
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13. Pragmatic comparative effectiveness study of multimodal fascia iliaca nerve block and continuous lumbar epidural-based protocols for periacetabular osteotomy.
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Albertz, Megan, Whitlock, Patrick, Yang, Fang, Ding, Lili, Uchtman, Molly, Mecoli, Marc, Olbrecht, Vanessa, Moore, David, McCarthy, James, and Chidambaran, Vidya
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OSTEOTOMY ,NERVE block ,PAIN management ,ACETAMINOPHEN ,ANESTHESIA - Published
- 2020
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14. A Phase 1, Placebo-controlled, Randomized, Single Ascending Dose Study and a Volunteer Infection Study to Characterize the Safety, Pharmacokinetics, and Antimalarial Activity of the Plasmodium Phosphatidylinositol 4-Kinase Inhibitor MMV390048.
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McCarthy, James S, Donini, Cristina, Chalon, Stephan, Woodford, John, Marquart, Louise, Collins, Katharine A, Rozenberg, Felix D, Fidock, David A, Cherkaoui-Rbati, Mohammed H, Gobeau, Nathalie, and Möhrle, Jörg J
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DRUG therapy for malaria , *ANTIMALARIALS , *COMBINED modality therapy , *CONFIDENCE intervals , *RESEARCH funding , *STATISTICAL sampling , *TRANSFERASES , *RANDOMIZED controlled trials , *DESCRIPTIVE statistics - Abstract
Background MMV390048 is the first Plasmodium phosphatidylinositol 4-kinase inhibitor to reach clinical development as a new antimalarial. We aimed to characterize the safety, pharmacokinetics, and antimalarial activity of a tablet formulation of MMV390048. Methods A 2-part, phase 1 trial was conducted in healthy adults. Part 1 was a double-blind, randomized, placebo-controlled, single ascending dose study consisting of 3 cohorts (40, 80, 120 mg MMV390048). Part 2 was an open-label volunteer infection study using the Plasmodium falciparum induced blood-stage malaria model consisting of 2 cohorts (40 mg and 80 mg MMV390048). Results Twenty four subjects were enrolled in part 1 (n = 8 per cohort, randomized 3:1 MMV390048:placebo) and 15 subjects were enrolled in part 2 (40 mg [n = 7] and 80 mg [n = 8] cohorts). One subject was withdrawn from part 2 (80 mg cohort) before dosing and was not included in analyses. No serious or severe adverse events were attributed to MMV390048. The rate of parasite clearance was greater in subjects administered 80 mg compared to those administered 40 mg (clearance half-life 5.5 hours [95% confidence interval {CI}, 5.2–6.0 hours] vs 6.4 hours [95% CI, 6.0–6.9 hours]; P = .005). Pharmacokinetic/pharmacodynamic modeling estimated a minimum inhibitory concentration of 83 ng/mL and a minimal parasiticidal concentration that would achieve 90% of the maximum effect of 238 ng/mL, and predicted that a single 120-mg dose would achieve an adequate clinical and parasitological response with 92% certainty. Conclusions The safety, pharmacokinetics, and pharmacodynamics of MMV390048 support its further development as a partner drug of a single-dose combination therapy for malaria. Clinical Trials Registration NCT02783820 (part 1); NCT02783833 (part 2). [ABSTRACT FROM AUTHOR]
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- 2020
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15. ΔNp63α is a super enhancer-enriched master factor controlling the basal-to-luminal differentiation transcriptional program and gene regulatory networks in nasopharyngeal carcinoma.
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Cai, Jing, Chen, Shengnan, Yi, Mei, Tan, Yixin, Peng, Qian, Ban, Yuanyuan, Yang, Jianbo, Li, Xiaoling, Zeng, Zhaoyang, Xiong, Wei, McCarthy, James B, Li, Guiyuan, Li, Xiayu, and Xiang, Bo
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GENE regulatory networks ,CIS-regulatory elements (Genetics) ,GENE enhancers ,GENETIC regulation ,GENE expression - Abstract
Nasopharyngeal carcinoma (NPC) originates via malignant transformation of the pseudostratified nasopharyngeal epithelium, composed of basal and luminal cells. Super enhancers (SEs) are large clusters of cis -elements involved in the regulation of gene expression through epigenetic regulatory mechanisms. In this study, we demonstrated that basal cell-specific proteins are highly expressed, whereas luminal cell proteins are downregulated in NPC, implying a perturbation of basal-to-luminal differentiation during NPC development. We characterized NPC cell models according to different molecular signatures associated with their differentiation status and found that distinct SE landscapes are tightly associated with basal or luminal-like molecular signatures in NPC cells. Furthermore, the transcription of ΔNP63α, a prominent isoform of TP63, was found to be driven by SEs in NPC cells. Data from chromatin immunoprecipitation (ChIP)-sequencing showed that ΔNP63α largely occupied regions of SEs associated with basal cell-specific genes. Silencing of ΔNP63α led to a loss of H3K27ac occupancy at basal-type SEs and triggered a basal-to-luminal gene expression signature switch, suggesting that ΔNP63α is a master factor contributing to the perturbation of luminal differentiation. Integrative transcriptomics analysis also revealed that ΔNP63α acts as a core factor involved in the dysregulation of gene expression in NPC. Furthermore, ΔNP63α enhanced EGF-stimulated NF-κB activation in NPC cells by activating SE-mediated EGFR transcription. Finally, depletion of ΔNP63α in NPC cells induced robust growth inhibition of NPC cells in vitro and in vivo. Our data revealed that ΔNP63α-dependent SE reprogramming contributes to the blockade of luminal differentiation and uncontrolled proliferation in NPC. [ABSTRACT FROM AUTHOR]
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- 2020
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16. Growth Rate of Plasmodium falciparum: Analysis of Parasite Growth Data From Malaria Volunteer Infection Studies.
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Wockner, Leesa F, Hoffmann, Isabell, Webb, Lachlan, Mordmüller, Benjamin, Murphy, Sean C, Kublin, James G, O'Rourke, Peter, McCarthy, James S, and Marquart, Louise
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PLASMODIUM falciparum ,MALARIA ,BLOOD parasites ,PLASMODIUM ,PROTOZOA ,RESEARCH ,PARASITEMIA ,RESEARCH methodology ,RETROSPECTIVE studies ,EVALUATION research ,MEDICAL cooperation ,COMPARATIVE studies - Abstract
Background: Growth rate of malaria parasites in the blood of infected subjects is an important measure of efficacy of drugs and vaccines.Methods: We used log-linear and sine-wave models to estimate the parasite growth rate of the 3D7 strain of Plasmodium falciparum using data from 177 subjects from 14 induced blood stage malaria (IBSM) studies conducted at QIMR Berghofer. We estimated parasite multiplication rate per 48 hours (PMR48), PMR per life-cycle (PMRLC), and parasite life-cycle duration. We compared these parameters to those from studies conducted elsewhere with infections induced by IBSM (n = 66), sporozoites via mosquito bite (n = 336), or injection (n = 51).Results: The parasite growth rate of 3D7 in QIMR Berghofer studies was 0.75/day (95% confidence interval [CI], .73-.77/day), PMR48 was 31.9 (95% CI, 28.7-35.4), PMRLC was 16.4 (95% CI, 15.1-17.8), and parasite life-cycle was 38.8 hours (95% CI, 38.3-39.2 hours). These parameters were similar to estimates from IBSM studies elsewhere (0.71/day, 95% CI, .67-.75/day; PMR48 26.6, 95% CI, 22.2-31.8) but significantly higher (P < .001) than in sporozoite studies (0.47/day, 95% CI, .43-.50/day; PMR48 8.6, 95% CI, 7.3-10.1).Conclusions: Parasite growth rates were similar across different IBSM studies and higher than infections induced by sporozoite. [ABSTRACT FROM AUTHOR]- Published
- 2020
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17. An Experimental Human Blood-Stage Model for Studying Plasmodium malariae Infection.
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Woodford, John, Collins, Katharine A, Odedra, Anand, Wang, Claire, Jang, Ihn Kyung, Domingo, Gonzalo J, Watts, Rebecca, Marquart, Louise, Berriman, Matthew, Otto, Thomas D, and McCarthy, James S
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PLASMODIUM ,SYMPTOMS ,PARASITEMIA ,INFECTION ,MALARIA ,PROTOZOA physiology ,PROTOZOA ,FOOD habits ,RESEARCH ,ANIMAL experimentation ,RESEARCH methodology ,EVALUATION research ,MEDICAL cooperation ,COMPARATIVE studies ,GENE expression profiling ,ANTIMALARIALS ,INSECTS - Abstract
Background: Plasmodium malariae is considered a minor malaria parasite, although its global disease burden is underappreciated. The aim of this study was to develop an induced blood-stage malaria (IBSM) model of P. malariae to study parasite biology, diagnostic assays, and treatment.Methods: This clinical trial involved 2 healthy subjects who were intravenously inoculated with cryopreserved P. malariae-infected erythrocytes. Subjects were treated with artemether-lumefantrine after development of clinical symptoms. Prior to antimalarial therapy, mosquito-feeding assays were performed to investigate transmission, and blood samples were collected for rapid diagnostic testing and parasite transcription profiling. Serial blood samples were collected for biomarker analysis.Results: Both subjects experienced symptoms and signs typical of early malaria. Parasitemia was detected 7 days after inoculation, and parasite concentrations increased until antimalarial treatment was initiated 25 and 21 days after inoculation for subjects 1 and 2 respectively (peak parasitemia levels, 174 182 and 50 291 parasites/mL, respectively). The parasite clearance half-life following artemether-lumefantrine treatment was 6.7 hours. Mosquito transmission was observed for 1 subject, while in vivo parasite transcription and biomarkers were successfully profiled.Conclusions: An IBSM model of P. malariae has been successfully developed and may be used to study the biology of, diagnostic testing for, and treatment of this neglected malaria species.Clinical Trials Registration: ACTRN12617000048381. [ABSTRACT FROM AUTHOR]- Published
- 2020
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18. Antiphosphatidylserine Immunoglobulin M and Immunoglobulin G Antibodies Are Higher in Vivax Than Falciparum Malaria, and Associated With Early Anemia in Both Species.
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Barber, Bridget E, Grigg, Matthew J, Piera, Kim, Amante, Fiona H, William, Timothy, Boyle, Michelle J, Minigo, Gabriela, Dondorp, Arjen M, McCarthy, James S, and Anstey, Nicholas M
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IMMUNOGLOBULIN M ,IMMUNOGLOBULIN G ,TRYPANOSOMA ,MALARIA ,IMMUNOGLOBULINS ,ERYTHROCYTES ,PHAGOCYTOSIS ,ANTICARDIOLIPIN antibodies ,ANEMIA ,AUTOANTIBODIES ,COMPARATIVE studies ,HEMOGLOBINS ,RESEARCH methodology ,MEDICAL cooperation ,RESEARCH ,EVALUATION research ,DISEASE complications - Abstract
Background: Anemia is a major complication of vivax malaria. Antiphosphatidylserine (PS) antibodies generated during falciparum malaria mediate phagocytosis of uninfected red blood cells that expose PS and have been linked to late malarial anemia. However, their role in anemia from non-falciparum Plasmodium species is not known, nor their role in early anemia from falciparum malaria.Methods: We measured PS immunoglobulin G (IgG) and immunoglobulin M (IgM) antibodies in Malaysian patients with vivax, falciparum, knowlesi, and malariae malaria, and in healthy controls, and correlated antibody titres with hemoglobin. PS antibodies were also measured in volunteers experimentally infected with Plasmodium vivax and Plasmodium falciparum.Results: PS IgM and IgG antibodies were elevated in patients with vivax, falciparum, knowlesi, and malariae malaria (P < .0001 for all comparisons with controls) and were highest in vivax malaria. In vivax and falciparum malaria, PS IgM and IgG on admission correlated inversely with admission and nadir hemoglobin, controlling for parasitemia and fever duration. PS IgM and IgG were also increased in volunteers infected with blood-stage P. vivax and P. falciparum, and were higher in P. vivax infection.Conclusions: PS antibodies are higher in vivax than falciparum malaria, correlate inversely with hemoglobin, and may contribute to the early loss of uninfected red blood cells found in malarial anemia from both species. [ABSTRACT FROM AUTHOR]- Published
- 2019
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19. Blood Schizonticidal Activity and Safety of Tafenoquine When Administered as Chemoprophylaxis to Healthy, Nonimmune Participants Followed by Blood Stage Plasmodium falciparum Challenge: A Randomized, Double-blind, Placebo-controlled Phase 1b Study.
- Author
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McCarthy, James S, Smith, Bryan, Reid, Mark, Berman, Jonathan, Marquart, Louise, Dobbin, Caroline, West, Leanne, Read, Lisa T, and Dow, Geoff S
- Subjects
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BACTEREMIA prevention , *MALARIA prevention , *ERYTHROCYTES , *ANIMAL experimentation , *ANTIMALARIALS , *HYPERBILIRUBINEMIA , *INTRAVENOUS therapy , *MALARIA , *OXIDOREDUCTASES , *PATIENT safety , *POLYMERASE chain reaction , *QUINOLINE , *RANDOMIZED controlled trials , *TREATMENT effectiveness , *BLIND experiment , *PARASITEMIA , *THERAPEUTICS - Abstract
Background Tafenoquine was recently approved for chemoprophylaxis of malaria. Its specific activity against liver and blood stages of Plasmodium species has been separately characterized in animals but not in humans. Methods In this randomized, double-blind, placebo-controlled study, 16 malaria-naive, glucose-6-phosphate dehydrogenase–normal participants aged 20–42 years received tafenoquine chemoprophylaxis prior to challenge with blood stage Plasmodium falciparum. Participants were randomly assigned to either tafenoquine (n = 12) or placebo (n = 4) and took blinded study medication (single 200-mg dose) on days 1, 2, 3, and 10, followed by intravenous inoculation with approximately 2800 P. falciparum parasitized erythrocytes on day 13. The primary endpoint was the number of participants requiring rescue treatment with artemether/lumefantrine due to the onset of parasitemia as determined by quantitative polymerase chain reaction. Results None of the 12 participants who received tafenoquine developed parasitemia, whereas all placebo participants developed parasitemia (P =.0005). Two cases of mild hemoglobin decrease and a single case of mild hyperbilirubinemia occurred in the tafenoquine group. Conclusions Tafenoquine chemoprophylaxis is safe and effective in preventing malaria in healthy nonimmune participants challenged with blood stage P. falciparum. Clinical Trials Registration Australian and New Zealand Clinical Trials Registry (ANZCTR): ACTRN12617000102370. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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20. Plasmodium falciparum Activates CD16 + Dendritic Cells to Produce Tumor Necrosis Factor and Interleukin-10 in Subpatent Malaria.
- Author
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Loughland, Jessica R, Woodberry, Tonia, Boyle, Michelle J, Tipping, Peta E, Piera, Kim A, Amante, Fiona H, Kenangalem, Enny, Price, Ric N, Engwerda, Christian R, Anstey, Nicholas M, McCarthy, James S, and Minigo, Gabriela
- Abstract
Background The malaria causing parasite Plasmodium subverts host immune responses by several strategies including the modulation of dendritic cells (DCs). Methods In this study, we show that Plasmodium falciparum skewed CD16
+ DC cytokine responses towards interleukin (IL)-10 production in vitro, distinct to the cytokine profile induced by Toll-like receptor ligation. To determine CD16+ DC responsiveness in vivo, we assessed their function after induced P falciparum infection in malaria-naive volunteers. Results CD16+ DCs underwent distinctive activation, with increased expression of maturation markers human leukocyte antigen (HLA)-DR and CD86, enhanced tumor necrosis factor (TNF) production, and coproduction of TNF/IL-10. In vitro restimulation with P falciparum further increased IL-10 production. In contrast, during naturally acquired malaria episode, CD16+ DCs showed diminished maturation, suggesting increased parasite burden and previous exposure influence DC subset function. Conclusions These findings identify CD16+ DCs as the only DC subset activated during primary blood-stage human Plasmodium infection. As dual cytokine producers, CD16+ DCs contribute to inflammatory as well as regulatory innate immune processes. [ABSTRACT FROM AUTHOR]- Published
- 2019
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21. Early Changes in CD4+ T-Cell Activation During Blood-Stage Plasmodium falciparum Infection.
- Author
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Edwards, Chelsea L, Ng, Susanna S, Corvino, Dillon, Oca, Marcela Montes de, Rivera, Fabian de Labastida, Nones, Katia, Lakis, Vanessa, Waddell, Nicola, Amante, Fiona H, McCarthy, James S, Montes de Oca, Marcela, de Labastida Rivera, Fabian, and Engwerda, Christian R
- Subjects
RISK of malaria ,PLASMODIUM falciparum ,CD4 antigen ,IMMUNOREGULATION ,ARTEMISININ ,MALARIA vaccines ,ANTIPARASITIC agents ,THERAPEUTICS - Abstract
We examined transcriptional changes in CD4+ T cells during blood-stage Plasmodium falciparum infection in individuals without a history of previous parasite exposure. Transcription of CXCL8 (encoding interleukin 8) in CD4+ T cells was identified as an early biomarker of submicroscopic P. falciparum infection, with predictive power for parasite growth. Following antiparasitic drug treatment, a CD4+ T-cell regulatory phenotype developed. PD1 expression on CD49b+CD4+ T (putative type I regulatory T) cells after drug treatment negatively correlated with earlier parasite growth. Blockade of PD1 but no other immune checkpoint molecules tested increased interferon γ and interleukin 10 production in an ex vivo antigen-specific cellular assay at the peak of infection. These results demonstrate the early development of an immunoregulatory CD4+ T-cell phenotype in blood-stage P. falciparum infection and show that a selective immune checkpoint blockade may be used to modulate early developing antiparasitic immunoregulatory pathways as part of malaria vaccine and/or drug treatment protocols. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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22. Human Immunization With a Polymorphic Malaria Vaccine Candidate Induced Antibodies to Conserved Epitopes That Promote Functional Antibodies to Multiple Parasite Strains.
- Author
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Feng, Gaoqian, Boyle, Michelle J., Cross, Nadia, Chan, Jo-Anne, Reiling, Linda, Osier, Faith, Stanisic, Danielle I., Mueller, Ivo, Anders, Robin F., McCarthy, James S., Richards, Jack S., and Beeson, James G.
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MALARIA vaccines ,IMMUNOGLOBULINS ,PLASMODIUM falciparum ,PHAGOCYTOSIS ,MEROZOITES - Abstract
Background: Overcoming antigenic diversity is a key challenge in the development of effective Plasmodium falciparum malaria vaccines. Strategies that promote the generation of antibodies targeting conserved epitopes of vaccine antigens may provide protection against diverse parasites strains. Understanding differences between vaccine-induced and naturally acquired immunity is important to achieving this goal.Methods: We analyzed antibodies generated in a phase 1 human vaccine trial, MSP2-C1, which included 2 allelic forms of MSP2, an abundant vaccine antigen on the merozoite surface. Vaccine-induced responses were assessed for functional activity against multiple parasite strains, and cross-reactivity of antibodies was determined using competition ELISA and epitope mapping approaches.Results: Vaccination induced cytophilic antibody responses with strain-transcending opsonic phagocytosis and complement-fixing function. In contrast to antibodies acquired via natural infection, vaccine-induced antibodies were directed towards conserved epitopes at the C-terminus of MSP2, whereas naturally acquired antibodies mainly targeted polymorphic epitopes. Functional activity of C-terminal-targeted antibodies was confirmed using monoclonal antibodies that promoted opsonic phagocytosis against multiple parasite strains.Conclusion: Vaccination generated markedly different responses to polymorphic antigens than naturally acquired immunity and targeted conserved functional epitopes. Induction of antibodies targeting conserved regions of malaria antigens provides a promising vaccine strategy to overcome antigenic diversity for developing effective malaria vaccines. [ABSTRACT FROM AUTHOR]- Published
- 2018
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23. In vitro elucidation of the role of pericellular matrix in metastatic extravasation and invasion of breast carcinoma cells.
- Author
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Brett, Marie-Elena, Bomberger, Heather E., Doak, Geneva R., Price, Matthew A., McCarthy, James B., and Wood, David K.
- Abstract
Numerous studies have demonstrated the importance of altered hyaluronan metabolism to malignant progression of multiple tumor types, including breast carcinomas. Increased hyaluronan (HA) metabolism in the stroma of primary tumors promotes activation of oncogenic signaling pathways that impact tumor initiation, growth, and invasion. Carcinoma cell synthesis and assembly of HA-rich pericellular matrices induces a stromal-independent phenotype, which is associated with cancer progression. Although the pro-tumorigenic role of stromal HA is well established, a novel but unexplored hypothesis is that carcinoma cell-associated HA pericellular matrices promote metastasis of circulating tumor cells. Here, we report the development of an in vitro assay that employs microfluidic techniques to directly measure the importance of an HA-rich pericellular matrix in the entry of carcinoma cells into ectopic sites. This model provides the capability to visualize specific steps in metastasis, which is difficult using animal models. The results show that the presence of a HA-rich pericellular matrix correlates to the invasive and metastatic potential of breast carcinoma cells. Furthermore, enzymatic removal or pharmacologic inhibition of HA synthesis significantly inhibits carcinoma cell extravasation and invasion in this model system. These results implicate pericellular HA-rich carcinoma cell associated pericellular matrices in colonization of ectopic sites by circulating tumor cells and support specific targeting of this matrix to limit metastasis in patients. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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24. Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom.
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McCarthy, James K., Smith, Sarah R., McCrow, John P., Tan, Maxine, Zheng, Hong, Beeri, Karen, Roth, Robyn, Lichtle, Christian, Goodenough, Ursula, Bowler, Chris P., Dupont, Christopher L., and Allen, Andrew E.
- Subjects
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GENETIC regulation , *CHLORIDE channels , *NITRATE reductase , *PHAEODACTYLUM tricornutum , *DIATOMS , *CARBON fixation , *MEMBRANE lipids - Abstract
The ecological prominence of diatoms in the ocean environment largely results from their superior competitive ability for dissolved nitrate (NO3 −). To investigate the cellular and genetic basis of diatom NO3 − assimilation, we generated a knockout in the nitrate reductase gene (NR -KO) of the model pennate diatom Phaeodactylum tricornutum. In NR -KO cells, N-assimilation was abolished although NO3 − transport remained intact. Unassimilated NO3 − accumulated in NR -KO cells, resulting in swelling and associated changes in biochemical composition and physiology. Elevated expression of genes encoding putative vacuolar NO3 − chloride channel transporters plus electron micrographs indicating enlarged vacuoles suggested vacuolar storage of NO3 −. Triacylglycerol concentrations in the NR -KO cells increased immediately following the addition of NO3 −, and these increases coincided with elevated gene expression of key triacylglycerol biosynthesis components. Simultaneously, induction of transcripts encoding proteins involved in thylakoid membrane lipid recycling suggested more abrupt repartitioning of carbon resources in NR -KO cells compared with the wild type. Conversely, ribosomal structure and photosystem genes were immediately deactivated in NR -KO cells following NO3 − addition, followed within hours by deactivation of genes encoding enzymes for chlorophyll biosynthesis and carbon fixation and metabolism. N-assimilation pathway genes respond uniquely, apparently induced simultaneously by both NO3 − replete and deplete conditions. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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25. Initiation of gametocytogenesis at very low parasite density in Plasmodium falciparum infection.
- Author
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Farid, Ryan, Dixon, Matthew W., Tilley, Leann, and McCarthy, James S.
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PLASMODIUM ,BLOOD parasites ,GERM cells ,PARASITEMIA ,PARASITIC diseases - Abstract
The recent focus on the elimination of malaria has led to an increased interest in the role of sexual stages in its transmission. We introduce Plasmodium falciparum gametocyte exported protein-5 (PfGEXP5) transcript analysis as an important tool for evaluating the earliest (ring) stage sexual gametocytes in the blood of infected individuals. We show that gametocyte rings are detected in the peripheral blood immediately following establishment of asexual infections-without the need for triggers such as high-density asexual parasitemia or drug treatment. Committed gametocytes are refractory to the commonly used drug piperaquine, and mature gametocytes reappear in the bloodstream 10 days after the initial appearance of gametocyte rings. A further wave of commitment is observed following recrudescent asexual parasitemia, and these gametocytes are again refractory to piperaquine treatment. This work has implications for monitoring gametocyte and transmission dynamics and responses to drug treatment. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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26. A humidity shock leads to rapid, temperature dependent changes in coffee leaf physiology and gene expression.
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Thioune, El-Hadji, McCarthy, James, Gallagher, Thomas, and Osborne, Bruce
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COFFEE , *EFFECT of temperature on plants , *EFFECT of humidity on plants , *LEAF physiology , *GENE expression in plants , *PHYSIOLOGY - Abstract
Climate change is expected to increase the frequency of above-normal atmospheric water deficits contemporaneous with periods of high temperatures. Here we explore alterations in physiology and gene expression in leaves of Coffea canephora Pierre ex A. Froehner caused by a sharp drop in relative humidity (RH) at three different temperatures. Both stomatal conductance (gs) and CO2 assimilation (A) measurements showed that gs and A values fell quickly at all temperatures after the transfer to low RH. However, leaf relative water content measurements indicated that leaves nonetheless experienced substantial water losses, implying that stomatal closure and/or resupply of water was not fast enough to stop excessive evaporative losses. At 27 and 35 °C, upper leaves showed significant decreases in Fv/Fm compared with lower leaves, suggesting a stronger impact on photosystem II for upper leaves, while at 42 °C, both upper and lower leaves were equally affected. Quantitative gene expression analysis of transcription factors associated with conventional dehydration stress, and genes involved with abscisic acid signalling, such as CcNCED3, indicated temperature-dependent, transcriptional changes during the Humidity Shock ('HuS') treatments. No expression was seen at 27 °C for the heat-shock gene CcHSP90-7, but it was strongly induced during the 42 °C 'HuS' treatment. Consistent with a proposal that important cellular damage occurred during the 42 °C 'HuS' treatment, two genes implicated in senescence were induced by this treatment. Overall, the data show that C. canephora plants subjected to a sharp drop in RH exhibit major, temperature-dependent alterations in leaf physiology and important changes in the expression of genes associated with abiotic stress and senescence. The results presented suggest that more detailed studies on the combined effects of low RH and high temperature are warranted. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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27. Posttreatment Transaminase Elevations in Controlled Human Malaria Infection and Naturally Acquired Malaria.
- Author
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Odedra, Anand, Woodford, John, Chalon, Stephan, Barber, Bridget E, and McCarthy, James S
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MALARIA ,INFECTION ,HUMAN beings ,DRUG therapy for malaria ,AMINOTRANSFERASES - Published
- 2022
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28. Efficacy of OZ439 (artefenomel) against early Plasmodium falciparum blood-stage malaria infection in healthy volunteers.
- Author
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McCarthy, James S., Baker, Mark, O'Rourke, Peter, Marquart, Louise, Griffin, Paul, van Huijsduijnen, Rob Hooft, Möhrle, Jörg J., and Hooft van Huijsduijnen, Rob
- Subjects
- *
ANTIMALARIALS , *PHARMACOKINETICS , *PHARMACODYNAMICS , *PLASMODIUM , *PARASITEMIA , *DRUG therapy for malaria , *HYDROCARBONS , *LONGITUDINAL method , *MICROBIAL sensitivity tests , *ORAL drug administration , *PARASITES , *PEROXIDES , *POLYMERASE chain reaction , *PROTOZOA , *RESEARCH funding , *TREATMENT effectiveness , *HUMAN research subjects - Abstract
Objectives: OZ439, or artefenomel, is an investigational synthetic ozonide antimalarial with similar potency, but a significantly improved pharmacokinetic profile, compared with artemisinins. We wished to measure key pharmacokinetic and pharmacodynamic parameters and the pharmacokinetic/pharmacodynamic relationship of artefenomel in humans to guide the drug's further development as combination therapy in patients.Patients and Methods: We tested artefenomel in the human induced blood-stage malaria (IBSM) model. Plasmodium infection was monitored by quantitative PCR (qPCR) and upon reaching 1000 parasites/mL single doses of 100, 200 and 500 mg of artefenomel were administered orally with evaluation of drug exposure and parasitaemia until rescue treatment after 16 days or earlier, if required.Results: A single 100 mg dose had only a transient effect, while the 200 mg dose resulted in a significant reduction in parasitaemia before early recrudescence. At the highest (500 mg) dose, initial clearance of parasites below the limit of detection of qPCR was observed, with a 48 h parasite reduction ratio (PRR48) >10 000 and a parasite clearance half-life of 3.6 h (95% CI 3.4-3.8 h). However, at this dose, recrudescence was seen in four of eight subjects 6-10 days after treatment. Pharmacokinetic/pharmacodynamic modelling predicted an MIC of 4.1 ng/mL.Conclusions: These results confirm the antimalarial potential of artefenomel for use in a single-exposure combination therapy. The observations from this study support and will assist further clinical development of artefenomel. [ABSTRACT FROM AUTHOR]- Published
- 2016
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29. Defining the Effectiveness of Antimalarial Chemotherapy: Investigation of the Lag in Parasite Clearance Following Drug Administration.
- Author
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Khoury, David S., Cromer, Deborah, Möhrle, Jörg J., McCarthy, James S., and Davenport, Miles P.
- Subjects
ANTIMALARIALS ,CANCER chemotherapy ,DRUG administration ,PARASITEMIA ,DRUG development ,POLYMERASE chain reaction - Abstract
Background: The emergence of drug-resistant malaria highlights the need for new agents. A desired characteristic of candidate antimalarials is rapid killing of parasites. This is typically measured by the rate of exponential clearance of parasitemia following treatment. However, this clearance rate excludes the highly variable lag phase, when the parasitemia level may increase, remain constant, or decrease. Understanding factors determining this lag phase is important for drug development.Methods: We assessed the kinetics of parasitemia in 112 volunteers infected with blood-stage Plasmodium falciparum and treated with 8 different antimalarials. The parasitemia level was measured by quantitative polymerase chain reaction. We analyzed the relationship between the timing of treatment in the parasite growth cycle, and whether the parasitemia level rose or fell in the first 12 or 24 hours after treatment.Results: The timing of treatment in the parasite life cycle predicted whether subjects experienced rises or falls in parasitemia level after treatment. Antimalarials were unable to prevent rises in the parasitemia level in the first 12 hours. However, in the first 24 hours after treatment, fast-acting but not slow-acting drugs reduced the parasitemia level independent of when treatment was administered.Conclusions: The highly variable lag phase depends on the speed of action of an antimalarial and when in the periodic growth cycle it is administered. [ABSTRACT FROM AUTHOR]- Published
- 2016
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30. Piperaquine Monotherapy of Drug-Susceptible Plasmodium falciparum Infection Results in Rapid Clearance of Parasitemia but Is Followed by the Appearance of Gametocytemia.
- Author
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Pasay, Cielo J., Rockett, Rebecca, Sekuloski, Silvana, Griffin, Paul, Marquart, Louise, Peatey, Christopher, Wang, Claire Y. T., O'Rourke, Peter, Elliott, Suzanne, Baker, Mark, Möhrle, Jörg J., and McCarthy, James S.
- Subjects
ARTEMISININ ,ANTIMALARIALS ,GERM cells ,MALARIA ,SESQUITERPENES - Abstract
Background: Piperaquine, coformulated with dihydroartemisinin, is a component of a widely used artemisinin combination therapy. There is a paucity of data on its antimalarial activity as a single agent. Such data, if available, would inform selection of new coformulations.Methods: We undertook a study in healthy subjects, using the induced blood stage malaria (IBSM) model to test the antimalarial activity of single doses of piperaquine (960, 640, and 480 mg) in 3 cohorts. In a pilot study in the third cohort, gametocyte clearance following administration of 15 mg, or 45 mg or no primaquine was investigated.Results: Parasite clearance over the 48-hour period after piperaquine administration was more rapid in the 960 mg cohort, compared with the 640 mg cohort (parasite reduction ratio, 2951 [95% confidence interval {CI}, 1520-5728] vs 586 [95% CI, 351-978]; P < .001). All 24 subjects developed gametocytemia as determined by pfs25 transcripts. Clearance of pfs25 was significantly faster in those receiving primaquine than in those not receiving primaquine (P < .001).Conclusions: Piperaquine possesses rapid parasite-clearing activity, but monotherapy is followed by the appearance of gametocytemia, which could facilitate the spread of malaria. This new information should be taken into account when developing future antimalarial coformulations.Clinical Trials Registration: ACTRN12613000565741. [ABSTRACT FROM AUTHOR]- Published
- 2016
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31. Identification, design and synthesis of tubulin-derived peptides as novel hyaluronan mimetic ligands for the receptor for hyaluronan-mediated motility (RHAMM/HMMR).
- Author
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Esguerra, Kenneth Virgel N., Tolg, Cornelia, Akentieva, Natalia, Price, Matthew, Cho, Choi-Fong, Lewis, John D., McCarthy, James B., Turley, Eva A., and Luyt, Leonard G.
- Published
- 2015
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32. 977Mechanistic within-host modelling to fast-track the selection of new antimalarial combination therapies.
- Author
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Simpson, Julie, Dini, Saber, Zaloumis, Sophie, Price, David, McCarthy, James, Cherkaoui, Mohammed, Kummel, Anne, and Gobeau, Nathalie
- Subjects
MALARIA ,DRUG development ,DRUG interactions ,PLASMODIUM ,FRAMES (Social sciences) ,RESOURCE allocation - Abstract
Background The efficacy of artemisinin-based combination therapies (ACTs), currently the first-line antimalarial treatments, is declining due to the emergence of resistance of malaria parasites to these drugs. This has led drug development initiatives to search for novel combination therapies to replace the failing ACTs. We developed a biologically informed within-host model, validated against data from volunteer infection studies, to guide critical drug development decisions. Methods A within-host model was developed, linking drug concentrations of two novel antimalarial drugs, OZ439 and DSM265, to their combined killing action and accounting for differential killing of these compounds against stages of the parasite's lifecycle. Data collected from malaria-infected volunteers treated with OZ439–DSM265 were used to estimate the model parameters in a hierarchical Bayesian framework. Posterior-predictive simulations of the model were used to determine the dosing regimen required to cure >90% patients. Results The results showed that 800 mg of OZ439 combined with 450 mg of DSM265, which are within the safe and tolerable dose range, can provide day 42 cure rates >90%, despite the estimated antagonistic interaction between the drugs. The importance of accommodating parasite age specificity of drug action was demonstrated. Conclusions The dosing regimens for the combination of OZ439-DSM265 determined from our data-informed in silico model suggest this compound may be a suitable candidate to replace failing ACTs. Key messages Assessing various scenarios within a simulation framework allows discovery of robust dosing regimens, accelerating the drug development process and ensuring efficient allocation of resources for phase 2 and 3 clinical trials. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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33. The catabolic triad: case report of fasting, major cardiac surgery and sodium–glucose co-transporter 2 inhibitors leading to perioperative euglycaemic ketoacidosis.
- Author
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Smyth, Coilin Collins, Collins, Maghnus, McCarthy, James, and Galvin, Sinead
- Published
- 2021
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34. Reply to White and Watson.
- Author
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Rebelo, Maria, McCarthy, James S, and Khoury, David S
- Subjects
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PHARMACOKINETICS - Published
- 2021
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35. Analysis of Breath Specimens for Biomarkers of Plasmodium falciparum Infection.
- Author
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Berna, Amalia Z., McCarthy, James S., Wang, Rosalind X., Saliba, Kevin J., Bravo, Florence G., Cassells, Julie, Padovan, Benjamin, and Trowell, Stephen C.
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MALARIA diagnosis , *ORGANIC compound analysis , *SULFIDES analysis , *BREATH tests , *LONGITUDINAL method , *ODORS , *RESEARCH funding , *PARASITEMIA - Abstract
Currently, the majority of diagnoses of malaria rely on a combination of the patient's clinical presentation and the visualization of parasites on a stained blood film. Breath offers an attractive alternative to blood as the basis for simple, noninvasive diagnosis of infectious diseases. In this study, breath samples were collected from individuals during controlled malaria to determine whether specific malaria-associated volatiles could be detected in breath. We identified 9 compounds whose concentrations varied significantly over the course of malaria: carbon dioxide, isoprene, acetone, benzene, cyclohexanone, and 4 thioethers. The latter group, consisting of allyl methyl sulfide, 1-methylthio-propane, (Z)-1-methylthio-1-propene, and (E)-1-methylthio-1-propene, had not previously been associated with any disease or condition. Before the availability of antimalarial drug treatment, there was evidence of concurrent 48-hour cyclical changes in the levels of both thioethers and parasitemia. When thioether concentrations were subjected to a phase shift of 24 hours, a direct correlation between the parasitemia and volatile levels was revealed. Volatile levels declined monotonically approximately 6.5 hours after initial drug treatment, correlating with clearance of parasitemia. No thioethers were detected in in vitro cultures of Plasmodium falciparum. The metabolic origin of the thioethers is not known, but results suggest that interplay between host and parasite metabolic pathways is involved in the production of these thioethers. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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36. Experimentally Induced Blood-Stage Plasmodium vivax Infection in Healthy Volunteers.
- Author
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McCarthy, James S., Griffin, Paul M., Sekuloski, Silvana, Bright, A. Taylor, Rockett, Rebecca, Looke, David, Elliott, Suzanne, Whiley, David, Sloots, Theo, Winzeler, Elizabeth A., and Trenholme, Katharine R.
- Subjects
- *
PLASMODIUM vivax , *MALARIA , *INFECTION , *VACCINES , *GERM cells , *ANTIMALARIALS - Abstract
Background. Major impediments to development of vaccines and drugs for Plasmodium vivax malaria are the inability to culture this species and the extreme difficulty in undertaking clinical research by experimental infection.Methods. A parasite bank was collected from a 49-year-old woman with P. vivax infection, characterized, and used in an experimental infection study.Results. The donor made a full recovery from malaria after collection of a parasite bank, which tested negative for agents screened for in blood donations. DNA sequence analysis of the isolate indicated that it was clonal. Two subjects inoculated with the isolate became polymerase chain reaction positive on days 8 and 9, with onset of symptoms and positive blood smears on day 14, when they were treated with artemether-lumefantrine, with rapid clinical and parasitologic response. Transcripts of the parasite gene pvs25 that is expressed in gametocytes, the life cycle stage infectious to mosquitoes, were first detected on days 11 and 12.Conclusions. This experimental system results in in vivo parasite growth, probably infectious to mosquitoes. It offers the opportunity to undertake studies previously impossible in P. vivax that will facilitate a better understanding of the pathology of vivax malaria and development of antimalarial drugs and vaccines.Trial Registration. ANZCTR: 12612001096842. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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37. miR-18a promotes malignant progression by impairing microRNA biogenesis in nasopharyngeal carcinoma.
- Author
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Luo, Zhaohui, Dai, Yafei, zhang, Liyang, Jiang, Chen, Li, Zheng, Yang, Jianbo, McCarthy, James B., She, Xiaoling, Zhang, Wenling, Ma, Jian, Xiong, Wei, Wu, Minghua, Lu, Jianhong, Li, Xiayu, Li, Xiaoling, Xiang, Juanjuan, and Li, Guiyuan
- Subjects
MICRORNA ,CANCER invasiveness ,NASOPHARYNX cancer ,RIBONUCLEASES ,DNA microarrays ,NON-coding RNA ,EPSTEIN-Barr virus ,CADHERINS ,CANCER treatment - Abstract
Dysregulation of microRNA (miRNA) biogenesis is implicated in cancer development and progression. Dicer and Drosha are established regulators of miRNA biogenesis. In this study, we used a miRNA array to evaluate the miRNA expression profiles in nasopharyngeal carcinoma (NPC) samples. The significance analysis of microarrays showed a global downregulation of miRNA expression in NPC samples compared with normal nasopharyngeal epithelial tissues. Notably, miR-18a, a member of the oncogenic miR-17–92 cluster, was upregulated in the NPC samples and ell lines. Clinical parameter studies showed that higher levels of miR-18a correlated with NPC advanced stage, lymph node metastasis, Epstein-Barr virus infection and a higher death rate from NPC, indicating oncogenic roles in NPC development. The expression levels of miR-18a and Dicer1 were inversely related in NPC tissues. Further studies demonstrated that miR-18a negatively regulated Dicer1 by binding to the 3′ untranslated regions of Dicer1. In vitro and in vivo biological function assays showed that miR-18a promoted the growth, migration and invasion of NPC cells by regulating Dicer1 expression, which caused the global downregulation of miRNA expression levels including miR-200 family and miR-143. Furthermore, we found that the epithelial mesenchymal transition marker E-cadherin and the oncogene K-Ras were aberrantly expressed after miR-18a transduction, and these alterations were directly induced by downregulation of the miR-200 family and miR-143. Collectively, our findings indicate that miR-18a plays an oncogenic role in the development of NPC by widespread downregulation of the miRNome and could be a potential therapeutic target for NPC. [ABSTRACT FROM PUBLISHER]
- Published
- 2013
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38. A Structural Basis for the Biosynthesis of the Major Chlorogenic Acids Found in Coffee.
- Author
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Lallemand, Laura A., Zubieta, Chloe, Soon Goo Lee, Yechun Wang, Acajjaoui, Samira, Timmins, Joanna, McSweeney, Sean, Jez, Joseph M., McCarthy, James G., and McCarthy, Andrew A.
- Subjects
BIOSYNTHESIS ,CHLOROGENIC acid ,COFFEE ,DEPSIDES ,PSYCHOTROPIC plants - Abstract
Chlorogenic acids (CGAs) are a group of phenolic secondary metabolites produced by certain plant species and an important component of coffee (Coffea spp.). The CGAs have been implicated in biotic and abiotic stress responses, while the related shikimate esters are key intermediates for lignin biosynthesis. Here, two hydroxycinnamoyl-coenzyme A shikimate/quinate hydroxycinnamoyl transferases (HCT/HQT) from coffee were biochemically characterized. We show, to our knowledge for the first time, that in vitro, HCT is capable of synthesizing the 3,5-O-dicaffeoylquinic acid diester, a major constituent of the immature coffee grain. In order to further understand the substrate specificity and catalytic mechanism of the HCT/HQT, we performed structural and mutagenesis studies of HCT. The three-dimensional structure of a native HCT and a proteolytically stable lysine mutant enabled the identification of important residues involved in substrate specificity and catalysis. Site-directed mutagenesis confirmed the role of residues leucine-400 and phenylalanine-402 in substrate specificity and of histidine-153 and the valine-31 to proline-37 loop in catalysis. In addition, the histidine-154-asparagine mutant was observed to produce 4-fold more dichlorogenic acids compared with the native protein. These data provide, to our knowledge, the first structural characterization of a HCT and, in conjunction with the biochemical and mutagenesis studies presented here, delineate the underlying molecular-level determinants for substrate specificity and catalysis. This work has potential applications in fine-tuning the levels of shikimate and quinate esters (CGAs including dichlorogenic acids) in different plant species in order to generate reduced or elevated levels of the desired target compounds. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
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39. Low-Level Plasmodium falciparum Blood-Stage Infection Causes Dendritic Cell Apoptosis and Dysfunction in Healthy Volunteers.
- Author
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Woodberry, Tonia, Minigo, Gabriela, Piera, Kim A., Amante, Fiona H., Pinzon-Charry, Alberto, Good, Michael F., Lopez, J. Alejandro, Engwerda, Christian R., McCarthy, James S., and Anstey, Nicholas M.
- Subjects
PLASMODIUM falciparum ,DENDRITIC cells ,APOPTOSIS ,DRUG administration ,ETIOLOGY of diseases ,SYMPTOMS ,IMMUNE response - Abstract
Background. Dendritic cells (DCs) are highly specialized antigen-presenting cells that are crucial for initiation of immune responses. During naturally acquired malaria, DC number and function is reduced.Methods. The timing of, parasitemia threshold of, and contribution of apoptosis to DC loss were prospectively evaluated in 10 men after experimental challenge with approximately 1800 Plasmodium falciparum–parasitized red blood cells (pRBCs) and after drug cure initiated at a parasite level of ≥1000 parasites/mL.Results. The nadir levels of total, myeloid, and plasmacytoid DCs occurred 8 days after infection. DC loss was partially attributable to apoptosis, which was first detected on day 5 (median parasite level, 238 parasites/mL) and maximal at day 7. Remaining DCs exhibited a reduced ability to uptake particulate antigen. DC numbers recovered approximately 60 hours after antimalarial drug administration. There was no loss of DC number or function before or after drug cure in 5 men inoculated with <180 pRBCs and treated on day 6, when their parasite level was approximately 200 parasites/mL.Conclusions. Plasmodium causes DC loss in vivo, which is at least partially explained by apoptosis in response to blood-stage parasites. In primary infection, loss of DC number and function occurs early during the prepatent period and before or with onset of clinical symptoms. These findings may explain in part the inadequate development of immunity to blood-stage malaria infection. [ABSTRACT FROM PUBLISHER]
- Published
- 2012
- Full Text
- View/download PDF
40. NOR1 is an HSF1- and NRF1-regulated putative tumor suppressor inactivated by promoter hypermethylation in nasopharyngeal carcinoma.
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Li, Wenjuan, Li, Xiaoling, Wang, Wei, Li, Xiayu, Tan, Yixin, Yi, Mei, Yang, Jianbo, McCarthy, James B., Xiong, Wei, Wu, Minghua, Ma, Jian, Su, Bo, Zhang, Zuping, Liao, Qianjin, Xiang, Bo, and Li, Guiyuan
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NASOPHARYNX cancer ,GENETIC transcription regulation ,GENE silencing ,CARCINOGENESIS ,TUMOR suppressor genes ,CANCER chemotherapy ,LEUKEMIA ,HEAT shock proteins ,PROMOTERS (Genetics) ,MESSENGER RNA - Abstract
Promoter hypermethylation-mediated silencing of tumor suppressor genes (TSGs) is a hallmark of oncogenesis. Oxidored-nitro domain-containing protein 1 (NOR1) is a candidate TSG that is downregulated in nasopharyngeal carcinoma (NPC). In the present study, we identified a functional NOR1 promoter that is regulated by heat shock factor 1 and nuclear respiratory factor 1. The promoter is located within a CpG island. Hypermethylation of this CpG island was found in NPC tissue samples and cancer cell lines, whereas no aberrant promoter methylation was detected in non-cancerous nasopharyngeal tissue samples or normal nasopharyngeal epithelial cells. Treatment of NPC 6-10B cells and leukemia HL60 cells with 5′-aza-2′-deoxycytidine increased endogenous levels of NOR1 messenger RNA. Ectopic expression of NOR1 in NPC HNE1 cells inhibited tumor cell colony formation and viability. These findings suggest that promoter hypermethylation may participate in transcriptional inactivation of the NOR1 gene in NPC. Frequent epigenetic inactivation of the NOR1 gene in NPC suggests that it may be a critical tumor suppressor involved in the development of NPC. [ABSTRACT FROM AUTHOR]
- Published
- 2011
41. CSPG4 Protein as a New Target for the Antibody-Based Immunotherapy of Triple-Negative Breast Cancer.
- Author
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Xinhui Wang, Osada, Takuya, Yangyang Wang, Ling Yu, Sakakura, Koichi, Katayama, Akihiro, McCarthy, James B., Brufsky, Adam, Chivukula, Mamatha, Khoury, Thaer, Hsu, David S., Barry, William T., Lyerly, H. Kim, Clay, Timothy M., and Ferrone, Soldano
- Subjects
IMMUNOTHERAPY ,CHONDROITIN sulfates ,MONOCLONAL antibodies ,TRIPLE-negative breast cancer ,CANCER patients ,REGRESSION analysis ,CELL proliferation - Abstract
Background The cell surface proteoglycan, chondroitin sulfate proteoglycan 4 (CSPG4), is a potential target for monoclonal antibody (mAb)–based immunotherapy for many types of cancer. The lack of effective therapy for triple-negative breast cancer (TNBC) prompted us to examine whether CSPG4 is expressed in TNBC and can be targeted with CSPG4-specific mAb. Methods CSPG4 protein expression was assessed in 44 primary TNBC lesions, in TNBC cell lines HS578T, MDA-MB-231, MDA-MB-435, and SUM149, and in tumor cells in pleural effusions from 12 metastatic breast cancer patients. The effect of CSPG4-specific mAb 225.28 on growth, adhesion, and migration of TNBC cells was tested in vitro. The ability of mAb 225.28 to induce regression of tumor metastases (n = 7 mice) and to inhibit spontaneous metastasis and tumor recurrence (n = 12 mice per group) was tested in breast cancer models in mice. The mechanisms responsible for the antitumor effect of mAb 225.28 were also investigated in the cell lines and in the mouse models. All statistical tests were two-sided. Results CSPG4 protein was preferentially expressed in 32 of the 44 (72.7%) primary TNBC lesions tested, in TNBC cell lines, and in tumor cells in pleural effusions from 12 metastatic breast cancer patients. CSPG4-specific mAb 225.28 statistically significantly inhibited growth, adhesion, and migration of TNBC cells in vitro. mAb 225.28 induced 73.1% regression of tumor metastasis in a TNBC cell–derived experimental lung metastasis model (mAb 225.28 vs control, mean area of metastatic nodules = 44590.8 vs 165950.8 μm2; difference of mean = 121360.0 μm2, 95% confidence interval = 91010.7 to 151709.4 μm2; P < .001). Additionally, mAb 225.28 statistically significantly reduced spontaneous lung metastases and tumor recurrences in an orthotopic xenograft mouse model. The mechanisms responsible for antitumor effect included increased apoptosis and reduced mitotic activity in tumor cells, decreased blood vessel density in the tumor microenvironment, and reduced activation of signaling pathways involved in cell survival, proliferation and metastasis. Conclusions This study identified CSPG4 as a new target for TNBC. The antitumor activity of CSPG4-specific mAb was mediated by multiple mechanisms, including the inhibition of signaling pathways crucial for TNBC cell survival, proliferation, and metastasis. [ABSTRACT FROM PUBLISHER]
- Published
- 2010
- Full Text
- View/download PDF
42. Effect of Antimalarial Drugs on Plasmodium falciparum Gametocytes.
- Author
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Peatey, Christopher L., Skinner-Adams, Tina S., Dixon, Matthew W. A., McCarthy, James S., Gardiner, Donald L., and Trenholme, Katharine R.
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MALARIA treatment ,DRUGS ,PLASMODIUM falciparum ,PLASMODIUM ,GERM cells ,GREEN fluorescent protein ,FLOW cytometry ,MICROBIAL viability counts ,MOSQUITOES ,INFECTIOUS disease transmission - Abstract
Gametocytes are the sexual stage of the malaria parasite and are essential for transmission to the mosquito. Antimalarial drugs have been reported to affect gametocyte production in vivo, which leads to a potential increase in transmission. We used transgenic Plasmodium falciparum parasites expressing a green fluorescent protein tag in a fluorescence-activated cell sorting-based assay to measure the effect of 8 antimalarial drugs on gametocyte production in vitro. Exposure to antimalarial drugs resulted in an increase in the number of gametocytes in test cultures. Although a dose-dependent reduction in late-stage gametocyte viability was observed, none of the drugs tested statistically significantly reduced gametocyte numbers. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
43. The Structure of Two N-Methyltransferases from the Caffeine Biosynthetic Pathway.
- Author
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McCarthy, Andrew A. and McCarthy, James G.
- Subjects
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COFFEE , *METHYLTRANSFERASES , *CAFFEINE , *BIOSYNTHESIS , *PLANT metabolites , *CATALYSIS - Abstract
Caffeine (1,3,7-trimethylxanthine) is a secondary metabolite produced by certain plant species and an important component of coffee (Coffea arabica and Coffea canephora) and tea (Camellia sinensis). Here we describe the structures of two S-adenosyl-L- n-methionine-dependent N-methyltransferases that mediate caffeine biosynthesis in C. canephora `robusta', xanthosine (XR) methyltransferase (XMT), and 1,7-dimethylxanthine methyltransferase (DXMT). Both were cocrystallized with the demethylated cofactor, S-adenosyl-L-cysteine, and substrate, either xanthosine or theobromine. Our structures reveal several elements that appear critical for substrate selectivity. Serme-316 in XMT appears central to the recognition of XR. Likewise, a change from glutamine-161 in XMT to histidine-160 in DXMT is likely to have catalytic consequences. A phenylalanine-266 to isoleucine-266 change in DXMT is also likely to be crucial for the discrimination between mono and dimethyl transferases in coffee. These key residues are probably functionally important and will guide future studies with implications for the biosynthesis of caffeine and its derivatives in plants. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
44. Utility of serological follow-up of chronic strongyloidiasis after anthelminthic chemotherapy
- Author
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Page, Wendy A., Dempsey, Karen, and McCarthy, James S.
- Subjects
STRONGYLOIDIASIS ,DIAGNOSIS ,ALBENDAZOLE ,DRUG therapy - Abstract
Summary: The difficulty of establishing a diagnosis and confirming cure of strongyloidiasis is widely appreciated. As parasitological diagnosis is often unsatisfactory, serodiagnosis is frequently relied upon. The aim of this study was to investigate changes in Strongyloides-specific antibody levels among a group of 79 seropositive Indigenous Australians living in a Strongyloides-endemic region. Testing before and after treatment revealed that seroreversion occurred most commonly after multiple courses of ivermectin therapy, with antibody titres of 35/42 (83%) subjects becoming negative. Seroreversion was also common following a single course of ivermectin or multiple courses of a 3-day regimen of albendazole, with seroreversion occurring in 13/19 (68%) and 7/10 (70%) subjects respectively. One 3-day course of albendazole was less effective with 4/10 (40%) subjects seroreverting, whereas none of the five subjects receiving a single dose of albendazole and 1/10 (10%) of subjects receiving no therapy seroreverted. These results support the use of serological follow-up for strongyloidiasis, and indicate that reversion to negative serostatus after ivermectin therapy is frequent. [Copyright &y& Elsevier]
- Published
- 2006
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45. Isolation and Characterization of cDNA Encoding Three Dehydrins Expressed During Coffea canephora (Robusta) Grain Development.
- Author
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HINNIGER, CÉCILE, CAILLET, VICTORIA, MICHOUX, FRANCK, BEN AMOR, MOHAMED, TANKSLEY, STEVE, CHENWEI LIN, and MCCARTHY, JAMES
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COFFEE ,PLANT proteins ,PLANT cells & tissues ,OSMOSIS ,GENE expression - Abstract
• Background and Aims Dehydrins, or group 2 late embryogenic abundant proteins (LEA), are hydrophilic Gly-rich proteins that are induced in vegetative tissues in response to dehydration, elevated salt, and low temperature, in addition to being expressed during the late stages of seed maturation. With the aim of characterizing and studying genes involved in osmotic stress tolerance in coffee, several full-length cDNA-encoding dehydrins (CcDH1, CcDH2 and CcDH3) and an LEA protein (CcLEA1) from Coffea canephora (robusta) were isolated and characterized.• Methods The protein sequences deduced from the full-length cDNA were analysed to classify each dehydrin/LEA gene product and RT–PCR was used to determine the expression pattern of all four genes during pericarp and grain development, and in several other tissues of C. arabica and C. canephora. Primer-assisted genome walking was used to isolate the promoter region of the grain specific dehydrin gene (CcDH2).• Key Results The CcDH1 and CcDH2 genes encode Y3SK2 dehydrins and the CcDH3 gene encodes an SK3 dehydrin. CcDH1 and CcDH2 are expressed during the final stages of arabica and robusta grain development, but only the CcDH1 transcripts are clearly detected in other tissues such as pericarp, leaves and flowers. CcDH3 transcripts are also found in developing arabica and robusta grain, in addition to being detected in pericarp, stem, leaves and flowers. CcLEA1 transcripts were only detected during a brief period of grain development. Finally, over 1 kb of genomic sequence potentially encoding the entire grain-specific promoter region of the CcDH2 gene was isolated and characterized.• Conclusions cDNA sequences for three dehydrins and one LEA protein have been obtained and the expression of the associated genes has been determined in various tissues of arabica and robusta coffees. Because induction of dehydrin gene expression is associated with osmotic stress in other plants, the dehydrin sequences presented here will facilitate future studies on the induction and control of the osmotic stress response in coffee. The unique expression pattern observed for CcLEA1, and the expression of a related gene in other plants, suggests that this gene may play an important role in the development of grain endosperm tissue. Genomic DNA containing the grain-specific CcDH2 promoter region has been cloned. Sequence analysis indicates that this promoter contains several putative regulatory sites implicated in the control of both seed- and osmotic stress-specific gene expression. Thus, the CcDH2 promoter is likely to be a useful tool for basic studies on the control of gene expression during both grain maturation and osmotic stress in coffee. [ABSTRACT FROM AUTHOR]
- Published
- 2006
- Full Text
- View/download PDF
46. Genetic Diversity of Plasmodium falciparum Histidine-Rich Protein 2 (PfHRP2) and Its Effect on the Performance of PfHRP2-Based Rapid Diagnostic Tests.
- Author
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Baker, Joanne, McCarthy, James, Gatton, Michelle, Kyle, Dennis E., Belizario, Vicente, Luchavez, Jennifer, Bell, David, and Qin Cheng
- Subjects
- *
PLASMODIUM falciparum , *MALARIA , *FEVER , *PROTOZOAN diseases , *DIAGNOSIS , *CLINICAL medicine - Abstract
Rising costs of antimalarial agents are increasing the demand for accurate diagnosis of malaria. Rapid diagnostic tests (RDTs) offer great potential to improve the diagnosis of malaria, particularly in remote areas. Many RDTs are based on the detection of Plasmodium falciparum histidine-rich protein (PfHRP) 2, but reports from field tests have questioned their sensitivity and reliability. We hypothesize that the variability in the results of PfHRP2-based RDTs is related to the variability in the target antigen. We tested this hypothesis by examining the genetic diversity of PfHRP2, which includes numerous amino acid repeats, in 75 P. falciparum lines and isolates originating from 19 countries and testing a subset of parasites by use of 2 PfHRP2-based RDTs. We observed extensive diversity in PfHRP2 sequences, both within and between countries. Logistic regression analysis indicated that 2 types of repeats were predictive of RDT detection sensitivity (87.5% accuracy), with predictions suggesting that only 84% of P. falciparum parasites in the Asia-Pacific region are likely to be detected at densities ≤250 parasites/μL. Our data also indicated that PfHRP3 may play a role in the performance of PfHRP2-based RDTs. These findings provide an alternative explanation for the variable sensitivity in field tests of malaria RDTs that is not due to the quality of the RDTs. [ABSTRACT FROM AUTHOR]
- Published
- 2005
- Full Text
- View/download PDF
47. Patterns of infant mortality from Armenian parish records: a study from 10 countries of the diaspora, 1737-1982.
- Author
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ARMENIAN, HAROUTUNE K, MCCARTHY, JAMES F, BALBANIAN, SEVAN G O, Armenian, H K, McCarthy, J F, and Balbanian, S G
- Abstract
Using parish records from 10 different countries with small Armenian communities, this study compared patterns of in fant mortality in these countnes over a period of 245 years. Deaths registered as aged ≥1 year were used to estimate the numerator for the infant mortality rates (IMR) while the denominator was estimated from births in the same year based on baptisms in the appropriate registers. To check on the validity of using the baptisms as the denominator for the IMR, records of infant deaths were linked with the baptismal records. Thus, from a sample of 273 infant deaths 78.4% had a baptismal record in the registers of the same church in which the death was recorded. Of the deaths 60% had a recorded cause of death. Over the past 245 years, IMR have fallen substantially in all parishes. However, there were notable exceptions to this general pattern of declining IMR over time. For example, the IMR was tripled in Palestine during the decade of the First World War, possibly as a result of the influx of refugees deported from Turkey. A study of the seasonal occurrence of the deaths revealed peaking of deaths between May and August, a pattern influenced by the relative importance of gastroenteritis as a cause of death during the summer months in Egypt where the majority of these infant deaths were recorded. A review of the most important causes of death helped identify an out break of undetermined cause in Belgrade in 1737 and an outhreak of dysentery deaths in Alexandria, Egypt, in 1909. The observed variation in IMR between the various communities and during different time periods may be due to dif ferences in registration procedures and also may reflect differences in socioeconomic or environmental conditions. [ABSTRACT FROM PUBLISHER]
- Published
- 1993
- Full Text
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48. A structural analysis of the bent kinetoplast DNA from Crithidia fasciculata by high resolution chemical probing.
- Author
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McCarthy, James G., Frederick, Christine A., and Nicolas, Alain
- Published
- 1993
49. Detection of an unusual distortion in A-tract DNA using KMnO4: effect of temperature and distamycin on the altered conformation.
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McCarthy, James and Rich, Alexander
- Published
- 1991
50. Isotopic fractionation during nitrate uptake by phytoplankton grown in continuous culture.
- Author
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Montoya, Joseph P. and McCarthy, James J.
- Published
- 1995
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