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This study presents an updated assessment of the projected climate change over Greece in the near future (2021–2050) and at the end of the 21st century (2071–2100) (EOC), relative to the reference period 1971–2000, and focusing on seasonal crop-specific climatic indices. The indices include days (d) with: a maximum daily near-surface temperature (TASMAX) > 30 °C in Spring, a TASMAX > 35 °C in Summer (hot days), a minimum daily near-surface temperature (TASMIN) < 0 °C (frost days) in Spring, a TASMIN > 20 °C (tropical nights) in Spring–Summer and the daily precipitation (PR) > 1 mm (wet days) in Spring and Summer covering the critical periods in which wheat, tomatoes, cotton, potato, grapes, rice and olive are more sensitive to water and/or temperature stress. The analysis is based on an ensemble of 11 EURO-CORDEX regional climate model simulations under the influence of a strong, a moderate, and a no mitigation Representative Concentration Pathway (RCP2.6, RCP4.5 and RCP8.5, respectively). The indices related to TASMAX are expected to increase by up to 11 days in Spring and 40 days in Summer, tropical nights to rise by up to 50 days, frost days to decrease by up to 20 days, and wet days to decline by up to 9 days in Spring and Summer, at the EOC with an RCP8.5. The increased heat stress and water deficit are expected to have negative crop impacts, in contrast to the positive effects anticipated by the decrease in frost days. This study constitutes a further step towards identifying the commodities and/or regions in Greece which, under climate change, are or will be significantly impacted.