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The estimation of water quality properties through satellite remote sensing relies on (1) the optical characteristics of the water body, (2) the resolutions (spatial, spectral, radiometric and temporal) of the sensor and (3) algorithm(s) applied. More than 80% of global water bodies fall under Case I (open ocean) waters, dominated by scattering and absorption associated with phytoplankton in the water column. Globally, previous studies show significant correlations between satellite-based retrieval methods and field measurements of absorbing and scattering constituents, while limited research from Australian coastal water bodies appears. This study presents a methodology to extract chlorophyll a properties from surface waters from near-coastal environments, within 2 km of coastline, in Tasmania, south-eastern Australia. We use general purpose, global, long-time series, multi-spectral satellite data, as opposed to ocean colour-specific sensor data. This approach may offer globally applicable tools for combining global satellite image archives with in situ field sensors for water quality monitoring. To enable applications from local to global scales, a cloud-based geospatial analysis workflow was developed and tested on several sites. This work represents the initial stage in developing a semi-automated near-coastal water-quality workflow using easily accessed, fully corrected global multi-spectral datasets alongside large-scale computation and delivery capabilities. Our results indicated a strong correlation between the in situ chlorophyll concentration data and blue-green band ratios from the multi-spectral sensor. In line with published research, environment-specific empirical models exhibited the highest correlations between in situ and satellite measurements, underscoring the importance of tailoring models to specific coastal waters. Our findings may provide the basis for developing this workflow for other sites in Australia. We acknowledge the use of general purpose multi-spectral data such as the Sentinel-2 and Landsat Series, their corrections and algorithms may not be as accurate and precise as ocean colour satellites. The data we are using are more readily accessible and also have true global coverage with global historic archives and regular, global collection will continue at least 10 years in the future. Regardless of sensor specifications, the retrieval method relies on localised algorithm calibration and validation using in situ measurements, which demonstrates close-to-realistic outputs. We hope this approach enables future applications to also consider these globally accessible and regularly updated datasets that are suited to coastal environments.

This study introduces a prototype end-to-end Simulator software tool for simulating two-dimensional satellite multispectral imagery for a variety of satellite instrument models in aquatic environments. Using case studies, the impact of variable sensor configurations on the performance of value-added products for challenging applications, such as coral reefs and cyanobacterial algal blooms, is assessed. This demonstrates how decisions regarding satellite sensor design, driven by cost constraints, directly influence the quality of value-added remote sensing products. Furthermore, the Simulator is used to identify situations where retrieval algorithms require further parameterization before application to unsimulated satellite data, where error sources cannot always be identified or isolated. The application of the Simulator can verify whether a given instrument design meets the performance requirements of end-users before build and launch, critically allowing for the justification of the cost and specifications for planned and future sensors. It is hoped that the Simulator will enable engineers and scientists to understand important design trade-offs in phase 0/A studies easily, quickly, reliably, and accurately in future Earth observation satellites and systems.

The aim of this research is to expand recent developments in the mapping of pasture yield with remotely piloted aircraft systems to that of satellite-borne imagery. To date, spatially explicit and accurate information of the pasture resource base is needed for improved climate-adapted livestock rangeland grazing. This study developed deep learning predictive models of pasture yield, as total standing dry matter in tonnes per hectare (TSDM (tha−1)), from field measurements and both remotely piloted aircraft systems and satellite imagery. Repeated remotely piloted aircraft system structure measurements derived from structure from motion photogrammetry provided measures of pasture biomass from many overlapping high-resolution images. These measurements were taken throughout a growing season and were modelled with persistent photosynthetic pasture responses from various Planet Dove high spatial resolution satellite image-derived vegetation indices. Pasture height modelling as an input to the modelling of yield was assessed against terrestrial laser scanning and reported correlation coefficients (R2) from 0.3 to 0.8 for both a coastal grassland and inland woodland pasture. Accuracy of the predictive modelling from both the remotely piloted aircraft system and the Planet Dove satellite image estimates of pasture yield ranged from 0.8 to 1.8 TSDM (tha−1). These results indicated that the practical application of repeated remotely piloted aircraft system derived measures of pasture yield can, with some limitations, be scaled-up to satellite-borne imagery to provide more temporally and spatially explicit measures of the pasture resource base.

Data pre-processing for developing a generalised land use and land cover (LULC) deep learning model using earth observation data is important for the classification of a different date and/or sensor. However, it is unclear how to approach deep learning segmentation problems in earth observation data. In this paper, we trialled different methods of data preparation for Convolutional Neural Network (CNN) training and semantic segmentation of LULC features within aerial photography over the Wet Tropics and Atherton Tablelands, Queensland, Australia. This was conducted by trialling and ranking various training patch selection sampling strategies, patch and batch sizes, data augmentations and scaling and inference strategies. Our results showed: a stratified random sampling approach for producing training patches counteracted class imbalances; a smaller number of larger patches (small batch size) improves model accuracy; data augmentations and scaling are imperative in creating a generalised model able to accurately classify LULC features in imagery from a different date and sensor; and producing the output classification by averaging multiple grids of patches and three rotated versions of each patch produced a more accurate and aesthetic result. Combining the findings from the trials, we fully trained five models on the 2018 training image and applied the model to the 2015 test image. The output LULC classifications achieved an average kappa of 0.84, user accuracy of 0.81, and producer accuracy of 0.87. Future research using CNNs and earth observation data should implement the findings of this project to increase LULC model accuracy and transferability.

The aim of this research was to test recent developments in the use of Remotely Piloted Aircraft Systems or Unmanned Aerial Vehicles (UAV)/drones to map both pasture quantity as biomass yield and pasture quality as the proportions of key pasture nutrients, across a selected range of field sites throughout the rangelands of Queensland. Improved pasture management begins with an understanding of the state of the resource base, UAV based methods can potentially achieve this at improved spatial and temporal scales. This study developed machine learning based predictive models of both pasture measures. UAV-based structure from motion photogrammetry provided a measure of yield from overlapping high resolution visible colour imagery. Pasture nutrient composition was estimated from the spectral signatures of visible near infrared hyperspectral UAV sensing. An automated pasture height surface modelling technique was developed, tested and used along with field site measurements to predict further estimates across each field site. Both prior knowledge and automated predictive modelling techniques were employed to predict yield and nutrition. Pasture height surface modelling was assessed against field measurements using a rising plate meter, results reported correlation coefficients (R2) ranging from 0.2 to 0.4 for both woodland and grassland field sites. Accuracy of the predictive modelling was determined from further field measurements of yield and on average indicated an error of 0.8 t ha−1 in grasslands and 1.3 t ha−1 in mixed woodlands across both modelling approaches. Correlation analyses between measures of pasture quality, acid detergent fibre and crude protein (ADF, CP), and spectral reflectance data indicated the visible red (651 nm) and red-edge (759 nm) regions were highly correlated (ADF R2 = 0.9 and CP R2 = 0.5 mean values). These findings agreed with previous studies linking specific absorption features with grass chemical composition. These results conclude that the practical application of such techniques, to efficiently and accurately map pasture yield and quality, is possible at the field site scale; however, further research is needed, in particular further field sampling of both yield and nutrient elements across such a diverse landscape, with the potential to scale up to a satellite platform for broader scale monitoring.

Java’s Brantas River Basin (BRB) is an increasingly urbanized tropical watershed with significant economic and ecological importance; yet knowledge of its land-use changes dynamics and drivers as well as their importance have barely been explored. This is the case for many other tropical watersheds in Java, Indonesia and beyond. This study of the BRB (1) quantifies the land-use changes in the period 1995–2015, (2) determines the patterns of land-use changes during 1995–2015, and (3) identifies the potential drivers of land-use changes during 1995–2015. Findings show that from 1995 to 2015, major transitions from forest to shrubs (218 km2), forest to dryland agriculture (512 km2), and from agriculture to urban areas (1484 km2) were observed in the BRB. Responses from land-user questionnaires suggest that drivers include a wide range of economic, social, technological, and biophysical attributes. An agreement matrix provided insight about consistency and inconsistency in the drivers inferred from the Land Change Modeler and those inferred from questionnaires. Factors that contributed to inconsistencies include the limited representation of local land-use features in the spatial data sets and comprehensiveness of land-user questionnaires. Together the two approaches signify the heterogeneity and scale-dependence of the land-use change process.

The determination of key phenological growth stages of banana plantations, such as flower emergence and plant establishment, is difficult due to the asynchronous growth habit of banana plants. Identifying phenological events assists growers in determining plant maturity, and harvest timing and guides the application of time-specific crop inputs. Currently, phenological monitoring requires repeated manual observations of individual plants’ growth stages, which is highly laborious, time-inefficient, and requires the handling and integration of large field-based data sets. The ability of growers to accurately forecast yield is also compounded by the asynchronous growth of banana plants. Satellite remote sensing has proved effective in monitoring spatial and temporal crop phenology in many broadacre crops. However, for banana crops, very high spatial and temporal resolution imagery is required to enable individual plant level monitoring. Unoccupied aerial vehicle (UAV)-based sensing technologies provide a cost-effective solution, with the potential to derive information on health, yield, and growth in a timely, consistent, and quantifiable manner. Our research explores the ability of UAV-derived data to track temporal phenological changes of individual banana plants from follower establishment to harvest. Individual plant crowns were delineated using object-based image analysis, with calculations of canopy height and canopy area producing strong correlations against corresponding ground-based measures of these parameters (R2 of 0.77 and 0.69 respectively). A temporal profile of canopy reflectance and plant morphology for 15 selected banana plants were derived from UAV-captured multispectral data over 21 UAV campaigns. The temporal profile was validated against ground-based determinations of key phenological growth stages. Derived measures of minimum plant height provided the strongest correlations to plant establishment and harvest, whilst interpolated maxima of normalised difference vegetation index (NDVI) best indicated flower emergence. For pre-harvest yield forecasting, the Enhanced Vegetation Index 2 provided the strongest relationship (R2 = 0.77) from imagery captured near flower emergence. These findings demonstrate that UAV-based multitemporal crop monitoring of individual banana plants can be used to determine key growing stages of banana plants and offer pre-harvest yield forecasts.

In the Australian summer season of 2022, exceptional rainfall events occurred in Southeast Queensland and parts of New South Wales, leading to extensive flooding of rural and urban areas. Here, we map the extent of flooding in the city of Brisbane and evaluate the change in electricity usage as a proxy for flood impact using VIIRS nighttime brightness imagery. Scanning a wide range of possible sensors, we used pre-flood and peak-flood PlanetScope imagery to map the inundated areas, using a new spectral index we developed, the Normalized Difference Inundation Index (NDII), which is based on changes in the NIR reflectance due to sediment-laden flood waters. We compared the Capella-Space X-band/HH imaging radar data captured at peak-flood date to the PlanetScope-derived mapping of the inundated areas. We found that in the Capella-Space image, significant flooded areas identified in PlanetScope imagery were omitted. These omission errors may be partly explained by the use of a single-date radar image, by the X-band, which is partly scattered by tree canopy, and by the SAR look angle under which flooded streets may be blocked from the view of the satellite. Using VIIRS nightly imagery, we were able to identify grid cells where electricity usage was impacted due to the floods. These changes in nighttime brightness matched both the inundated areas mapped via PlanetScope data as well as areas corresponding with decreased electricity loads reported by the regional electricity supplier. Altogether we demonstrate that using a variety of optical and radar sensors, as well as nighttime and daytime sensors, enable us to overcome data gaps and better understand the impact of flood events. We also emphasize the importance of high temporal revisit times (at least twice daily) to more accurately monitor flood events.

This research investigates the capability of field-based spectroscopy (350–2500 nm) for discriminating banana plants (Cavendish subgroup Williams) infested with spider mites from those unaffected. Spider mites are considered a major threat to agricultural production, as they occur on over 1000 plant species, including banana plant varieties. Plants were grown under a controlled glasshouse environment to remove any influence other than the imposed treatment (presence or absence of spider mites). The spectroradiometer measurements were undertaken with a leaf clip over three infestation events. From the resultant spectral data, various classification models were evaluated including partial least squares discriminant analysis (PLSDA), K-nearest neighbour, support vector machines and back propagation neural network. Wavelengths found to have a significant response to the presence of spider mites were extracted using competitive adaptive reweighted sampling (CARS), sub-window permutation analysis (SPA) and random frog (RF) and benchmarked using the classification models. CARS and SPA provided high detection success (86% prediction accuracy), with the wavelengths found to be significant corresponding with the red edge and near-infrared portions of the spectrum. As there is limited access to operational commercial hyperspectral imaging and additional complexity, a multispectral camera (Sequoia) was assessed for detecting spider mite impacts on banana plants. Simulated multispectral bands were able to provide a high level of detection accuracy (prediction accuracy of 82%) based on a PLSDA model, with the near-infrared band being most important, followed by the red edge, green and red bands. Multispectral vegetation indices were trialled using a simple threshold-based classification method using the green normalised difference vegetation index (GNDVI), which achieved 82% accuracy. This investigation determined that remote sensing approaches can provide an accurate method of detecting mite infestations, with multispectral sensors having the potential to provide a more commercially accessible means of detecting outbreaks.

Remotely sensed morphological traits have been used to assess functional diversity of forests. This approach is potentially spatial-scale-independent. Lidar data collected from the ground or by drone at a high point density provide an opportunity to consider multiple ecologically meaningful traits at fine-scale ecological units such as individual trees. However, high-spatial-resolution and multi-trait datasets used to calculate functional diversity can produce large volumes of data that can be computationally resource demanding. Functional diversity can be derived through a trait probability density (TPD) approach. Computing TPD in a high-dimensional trait space is computationally intensive. Reductions of the number of dimensions through trait selection and principal component analysis (PCA) may reduce the computational load. Trait selection can facilitate identification of ecologically meaningful traits and reduce inter-trait correlation. This study investigates whether kernel density estimator (KDE) or one-class support vector machine (SVM) may be computationally more efficient in calculating TPD. Four traits were selected for input into the TPD: canopy height, effective number of layers, plant to ground ratio, and box dimensions. When simulating a high-dimensional trait space, we found that TPD derived from KDE was more efficient than using SVM when the number of input traits was high. For five or more traits, applying dimension reduction techniques (e.g., PCA) are recommended. Furthermore, the kernel size for TPD needs to be appropriate for the ecological target unit and should be appropriate for the number of traits. The kernel size determines the required number of data points within the trait space. Therefore, 3–5 traits require a kernel size of at least 7×7pixels. This study contributes to improving the quality of TPD calculations based on traits derived from remote sensing data. We provide a set of recommendations based on our findings. This has the potential to improve reliability in identifying biodiversity hotspots.

Improved development of remote sensing approaches to deliver timely and accurate measurements for environmental monitoring, particularly with respect to marine and estuarine environments is a priority. We describe a machine learning, cloud processing protocol for simultaneous mapping seagrass meadows in waters of variable quality across Moreton Bay, Australia. This method was adapted from a protocol developed for mapping coral reef areas. Georeferenced spot check field-survey data were obtained across Moreton Bay, covering areas of differing water quality, and categorized into either substrate or ≥25% seagrass cover. These point data with coincident Landsat 8 OLI satellite imagery (30 m resolution; pulled directly from Google Earth Engine’s public archive) and a bathymetric layer (30 m resolution) were incorporated to train a random forest classifier. The semiautomated machine learning algorithm was applied to map seagrass in shallow areas of variable water quality simultaneously, and a bay-wide map was created for Moreton Bay. The output benthic habitat map representing seagrass presence/absence was accurate (63%) as determined by validation with an independent data set.

The summer season of 2019–2020 has been named Australia’s Black Summer because of the large forest fires that burnt for months in southeast Australia, affecting millions of Australia’s citizens and hundreds of millions of animals and capturing global media attention. This extensive fire season has been attributed to the global climate crisis, a long drought season and extreme fire weather conditions. Our aim in this study was to examine the factors that have led some of the wildfires to burn over larger areas for a longer duration and to cause more damage to vegetation. To this end, we studied all large forest and non-forest fires (>100 km2) that burnt in Australia between September 2019 and mid-February 2020 (Australia’s Black Summer fires), focusing on the forest fires in southeast Australia. We used a segmentation algorithm to define individual polygons of large fires based on the burn date from NASA’s Visible Infrared Imaging Radiometer Suite (VIIRS) active fires product and the Moderate Resolution Imaging Spectroradiometer (MODIS) burnt area product (MCD64A1). For each of the wildfires, we calculated the following 10 response variables, which served as proxies for the fires’ extent in space and time, spread and intensity: fire area, fire duration (days), the average spread of fire (area/days), fire radiative power (FRP; as detected by NASA’s MODIS Collection 6 active fires product (MCD14ML)), two burn severity products, and changes in vegetation as a result of the fire (as calculated using the vegetation health index (VHI) derived from AVHRR and VIIRS as well as live fuel moisture content (LFMC), photosynthetic vegetation (PV) and combined photosynthetic and non-photosynthetic vegetation (PV+NPV) derived from MODIS). We also computed more than 30 climatic, vegetation and anthropogenic variables based on remotely sensed derived variables, climatic time series and land cover datasets, which served as the explanatory variables. Altogether, 391 large fires were identified for Australia’s Black Summer. These included 205 forest fires with an average area of 584 km2 and 186 non-forest fires with an average area of 445 km2; 63 of the forest fires took place in southeast (SE) Australia (the area between Fraser Island, Queensland, and Kangaroo Island, South Australia), with an average area of 1097 km2. Australia’s Black Summer forest fires burnt for more days compared with non-forest fires. Overall, the stepwise regression models were most successful at explaining the response variables for the forest fires in SE Australia (n = 63; median-adjusted R2 of 64.3%), followed by all forest fires (n = 205; median-adjusted R2 of 55.8%) and all non-forest fires (n = 186; median-adjusted R2 of 48.2%). The two response variables that were best explained by the explanatory variables used as proxies for fires’ extent, spread and intensity across all models for the Black Summer forest and non-forest fires were the change in PV due to fire (median-adjusted R2 of 69.1%) and the change in VHI due to fire (median-adjusted R2 of 66.3%). Amongst the variables we examined, vegetation and fuel-related variables (such as previous frequency of fires and the conditions of the vegetation before the fire) were found to be more prevalent in the multivariate models for explaining the response variables in comparison with climatic and anthropogenic variables. This result suggests that better management of wildland–urban interfaces and natural vegetation using cultural and prescribed burning as well as planning landscapes with less flammable and more fire-tolerant ground cover plants may reduce fire risk to communities living near forests, but this is challenging given the sheer size and diversity of ecosystems in Australia.

Remote sensing has been applied to map the extent and biophysical properties of mangroves. However, the impact of several critical factors, such as the fractional cover and leaf-to-total area ratio of mangroves, on their canopy reflectance have rarely been reported. In this study, a systematic global sensitivity analysis was performed for mangroves based on a one-dimensional canopy reflectance model. Different scenarios such as sparse or dense canopies were set up to evaluate the impact of various biophysical and environmental factors, together with their ranges and probability distributions, on simulated canopy reflectance spectra and selected Sentinel-2A vegetation indices of mangroves. A variance-based method and a density-based method were adopted to compare the computed sensitivity indices. Our results showed that the fractional cover and leaf-to-total area ratio of mangrove crowns were among the most influential factors for all examined scenarios. As for other factors, plant area index and water depth were influential for sparse canopies while leaf biochemical properties and inclination angles were more influential for dense canopies. Therefore, these influential factors may need attention when mapping the biophysical properties of mangroves such as leaf area index. Moreover, a tailored sensitivity analysis is recommended for a specific mapping application as the computed sensitivity indices may be different if a specific input configuration and sensitivity analysis method are adopted.

Unoccupied aerial vehicles (UAVs) have become increasingly commonplace in aiding planning and management decisions in agricultural and horticultural crop production. The ability of UAV-based sensing technologies to provide high spatial (

Global shallow water bathymetry maps offer critical information to inform activities such as scientific research, environment protection, and marine transportation. Methods that employ satellite-based bathymetric modeling provide an alternative to conventional shipborne measurements, offering high spatial resolution combined with extensive coverage. We developed an automated bathymetry mapping approach based on the Sentinel-2 surface reflectance dataset in Google Earth Engine. We created a new method for generating a clean-water mosaic and a tailored automatic bathymetric estimation algorithm. We then evaluated the performance of the models at six globally diverse sites (Heron Island, Australia; West Coast of Hawaiʻi Island, Hawaiʻi; Saona Island, Dominican Republic; Punta Cana, Dominican Republic; St. Croix, United States Virgin Islands; and The Grenadines) using 113,520 field bathymetry sampling points. Our approach derived accurate bathymetry maps in shallow waters, with Root Mean Square Error (RMSE) values ranging from 1.2 to 1.9 m. This automatic, efficient, and robust method was applied to map shallow water bathymetry at the global scale, especially in areas which have high biodiversity (i.e., coral reefs).

The mining industry has been operating across the globe for millennia, but it is only in the last 50 years that remote sensing technology has enabled the visualization, mapping and assessment of mining impacts and landscape recovery. Our review of published literature (1970–2019) found that the number of ecologically focused remote sensing studies conducted on mine site rehabilitation increased gradually, with the greatest proportion of studies published in the 2010–2019 period. Early studies were driven exclusively by Landsat sensors at the regional and landscape scales while in the last decade, multiple earth observation and drone-based sensors across a diverse range of study locations contributed to our increased understanding of vegetation development post-mining. The Normalized Differenced Vegetation Index (NDVI) was the most common index, and was used in 45% of papers; while research that employed image classification techniques typically used supervised (48%) and manual interpretation methods (37%). Of the 37 publications that conducted error assessments, the average overall mapping accuracy was 84%. In the last decade, new classification methods such as Geographic Object-Based Image Analysis (GEOBIA) have emerged (10% of studies within the last ten years), along with new platforms and sensors such as drones (15% of studies within the last ten years) and high spatial and/or temporal resolution earth observation satellites. We used the monitoring standards recommended by the International Society for Ecological Restoration (SER) to determine the ecological attributes measured by each study. Most studies (63%) focused on land cover mapping (spatial mosaic); while comparatively fewer studies addressed complex topics such as ecosystem function and resilience, species composition, and absence of threats, which are commonly the focus of field-based rehabilitation monitoring. We propose a new research agenda based on identified knowledge gaps and the ecological monitoring tool recommended by SER, to ensure that future remote sensing approaches are conducted with a greater focus on ecological perspectives, i.e., in terms of final targets and end land-use goals. In particular, given the key rehabilitation requirement of self-sustainability, the demonstration of ecosystem resilience to disturbance and climate change should be a key area for future research.

Machine learning has been employed for various mapping and modeling tasks using input variables from different sources of remote sensing data. For feature selection involving high- spatial and spectral dimensionality data, various methods have been developed and incorporated into the machine learning framework to ensure an efficient and optimal computational process. This research aims to assess the accuracy of various feature selection and machine learning methods for estimating forest height using AISA (airborne imaging spectrometer for applications) hyperspectral bands (479 bands) and airborne light detection and ranging (lidar) height metrics (36 metrics), alone and combined. Feature selection and dimensionality reduction using Boruta (BO), principal component analysis (PCA), simulated annealing (SA), and genetic algorithm (GA) in combination with machine learning algorithms such as multivariate adaptive regression spline (MARS), extra trees (ET), support vector regression (SVR) with radial basis function, and extreme gradient boosting (XGB) with trees (XGbtree and XGBdart) and linear (XGBlin) classifiers were evaluated. The results demonstrated that the combinations of BO-XGBdart and BO-SVR delivered the best model performance for estimating tropical forest height by combining lidar and hyperspectral data, with R2 = 0.53 and RMSE = 1.7 m (18.4% of nRMSE and 0.046 m of bias) for BO-XGBdart and R2 = 0.51 and RMSE = 1.8 m (15.8% of nRMSE and −0.244 m of bias) for BO-SVR. Our study also demonstrated the effectiveness of BO for variables selection; it could reduce 95% of the data to select the 29 most important variables from the initial 516 variables from lidar metrics and hyperspectral data.

Airborne Laser Scanning (ALS) and Terrestrial Laser Scanning (TLS) systems are useful tools for deriving horticultural tree structure estimates. However, there are limited studies to guide growers and agronomists on different applications of the two technologies for horticultural tree crops, despite the importance of measuring tree structure for pruning practices, yield forecasting, tree condition assessment, irrigation and fertilization optimization. Here, we evaluated ALS data against near coincident TLS data in avocado, macadamia and mango orchards to demonstrate and assess their accuracies and potential application for mapping crown area, fractional cover, maximum crown height, and crown volume. ALS and TLS measurements were similar for crown area, fractional cover and maximum crown height (coefficient of determination (R2) ≥ 0.94, relative root mean square error (rRMSE) ≤ 4.47%). Due to the limited ability of ALS data to measure lower branches and within crown structure, crown volume estimates from ALS and TLS data were less correlated (R2 = 0.81, rRMSE = 42.66%) with the ALS data found to consistently underestimate crown volume. To illustrate the effects of different spatial resolution, capacity and coverage of ALS and TLS data, we also calculated leaf area, leaf area density and vertical leaf area profile from the TLS data, while canopy height, tree row dimensions and tree counts) at the orchard level were calculated from ALS data. Our results showed that ALS data have the ability to accurately measure horticultural crown structural parameters, which mainly rely on top of crown information, and measurements of hedgerow width, length and tree counts at the orchard scale is also achievable. While the use of TLS data to map crown structure can only cover a limited number of trees, the assessment of all crown strata is achievable, allowing measurements of crown volume, leaf area density and vertical leaf area profile to be derived for individual trees. This study provides information for growers and horticultural industries on the capacities and achievable mapping accuracies of standard ALS data for calculating crown structural attributes of horticultural tree crops.

Providing accurate maps of mangroves, where the spatial scales of the mapped features correspond to the ecological structures and processes, as opposed to pixel sizes and mapping approaches, is a major challenge for remote sensing. This study developed and evaluated an object-based approach to understand what types of mangrove information can be mapped using different image datasets (Landsat TM, ALOS AVNIR-2, WorldView-2, and LiDAR). We compared and contrasted the ability of these images to map five levels of mangrove features, including vegetation boundary, mangrove stands, mangrove zonations, individual tree crowns, and species communities. We used the Moreton Bay site in Australia as the primary site to develop the classification rule sets and Karimunjawa Island in Indonesia to test the applicability of the rule sets. The results demonstrated the effectiveness of a conceptual hierarchical model for mapping specific mangrove features at discrete spatial scales. However, the rule sets developed in this study require modification to map similar mangrove features at different locations or when using image data acquired by different sensors. Across the hierarchical levels, smaller object sizes (i.e., tree crowns) required more complex classification rule sets. Incorporation of contextual information (e.g., distance and elevation) increased the overall mapping accuracy at the mangrove stand level (from 85% to 94%) and mangrove zonation level (from 53% to 59%). We found that higher image spatial resolution, larger object size, and fewer land-cover classes result in higher mapping accuracies. This study highlights the potential of selected images and mapping techniques to map mangrove features, and provides guidance for how to do this effectively through multi-scale mangrove composition mapping.

Great Barrier Reef catchments are under pressure from the effects of climate change, landscape modifications, and hydrology alterations. With the use of remote sensing datasets covering large areas, conventional methods of change detection can expose broad transitions, whereas workflows that excerpt data for time-series trends divulge more subtle transformations of land cover modification. Here, we combine both these approaches to investigate change and trends in a large estuarine region of Central Queensland, Australia, that encompasses a national park and is adjacent to the Great Barrier Reef World Heritage site. Nine information classes were compiled in a maximum likelihood post classification change analysis in 2004−2017. Mangroves decreased (1146 hectares), as was the case with estuarine wetland (1495 hectares), and saltmarsh grass (1546 hectares). The overall classification accuracies and Kappa coefficient for 2004, 2006, 2009, 2013, 2015, and 2017 land cover maps were 85%, 88%, 88%, 89%, 81%, and 92%, respectively. The cumulative area of open forest, estuarine wetland, and saltmarsh grass (1628 hectares) was converted to pasture in a thematic change analysis showing the “from−to” change. We generated linear regression relationships to examine trends in pixel values across the time series. Our findings from a trend analysis showed a decreasing trend (p value range = 0.001−0.099) in the vegetation extent of open forest, fringing mangroves, estuarine wetlands, saltmarsh grass, and grazing areas, but this was inconsistent across the study site. Similar to reports from tropical regions elsewhere, saltmarsh grass is poorly represented in the national park. A severe tropical cyclone preceding the capture of the 2017 Landsat 8 Operational Land Imager (OLI) image was likely the main driver for reduced areas of shoreline and stream vegetation. Our research contributes to the body of knowledge on coastal ecosystem dynamics to enable planning to achieve more effective conservation outcomes.

The Banana Bunchy Top Virus (Genus: Babuvirus) reduces plant growth and prevents banana production. Because of the very large number of properties with banana plants in South East Queensland, Australia, a mapping approach was developed to delineate individual and clusters of banana plants to help plant identification and enable prioritization of plant inspections for Banana Bunchy Top Virus. Due to current outbreaks in South East Queensland, there are concerns that the virus may spread to the major banana growing districts further north. The mapping approach developed was based on very high spatial resolution airborne orthophotos. Object-based image analysis was used to: (1) detect banana plants using edge and line detection approaches; (2) produce accurate and realistic outlines around classified banana plants; and (3) evaluate the mapping results. The mapping approach was developed based on 10 image tiles of 1 km × 1 km and was applied to orthophotos (3600 image tiles) from September 2011 covering the entire Sunshine Coast Region in South East Queensland. Based on field inspections of the classified maps, a user’s mapping accuracy of 88% (n = 146) was achieved. The results will facilitate the detection of banana plants and increase the inspection rate of Banana Bunchy Top Virus in the future.

The spatial and temporal variability of phytoplankton blooms was investigated in two tropical coastal regions of northern Australia using the MEdium Resolution Imaging Spectrometer (MERIS) full mission (2002–2012) reduced resolution dataset. Satellite-derived proxies for phytoplankton (Chlorophyll-a (Chl), Fluorescence Line Height (FLH), Maximum Chlorophyll Index (MCI)) and suspended sediment (Total Suspended Matter (TSM)) were jointly analyzed for two clusters of the Great Barrier Reef Wet tropics (GBRW; 15°–19.5°S; Queensland) and the Van Diemen Gulf (VDG; 9°–13°S; Northern Territory). The analysis of time-series and Hovmöller diagrams of the four MERIS products provided a unique perspective on the processes linking phytoplankton blooms and river runoff, or resuspension, across spatio-temporal scales. Both regions are characterized by a complex oceanography and seasonal inflows of sediment, freshwater and nutrients during the tropical wet season months (November to April). The GBRW is characterized by a great variability in water clarity (Secchi depth 0–25 m). A long history of agricultural land use has led to a large increase in the seasonal discharge of sediments and nutrients, triggering seasonal phytoplankton blooms (>0.4 mg∙m−3) between January and April. In contrast, the VDG is a poorly flushed, turbid (Secchi depth 1.0 mg∙m−3) than in the GBRW, occurring up to twice a year between January and April. Over the 10-year MERIS mission, a weak decline in Chl and TSM was observed for the VDG (Sen slope: −2.85%/decade, τ = −0.32 and −3.57%/decade, τ = −0.24; p 0.05), while no significant trend in those two satellite products was observed in the GBRW. Cyanobacteria surface algal blooms occur in both regions between August and October. The MCI and FLH products were found to adequately complement Chl, while TSM provided relevant insight for the assessment of sediment resuspension and river runoff.

Landsat 8 images have been widely used for many applications, but cloud and cloud-shadow cover issues remain. In this study, multitemporal cloud masking (MCM), designed to detect cloud and cloud-shadow for Landsat 8 in tropical environments, was improved for application in sub-tropical environments, with the greatest improvement in cloud masking. We added a haze optimized transformation (HOT) test and thermal band in the previous MCM algorithm to improve the algorithm in the detection of haze, thin-cirrus cloud, and thick cloud. We also improved the previous MCM in the detection of cloud-shadow by adding a blue band. In the visual assessment, the algorithm can detect a thick cloud, haze, thin-cirrus cloud, and cloud-shadow accurately. In the statistical assessment, the average user’s accuracy and producer’s accuracy of cloud masking results across the different land cover in the selected area was 98.03% and 98.98%, respectively. On the other hand, the average user’s accuracy and producer’s accuracy of cloud-shadow masking results was 97.97% and 96.66%, respectively. Compared to the Landsat 8 cloud cover assessment (L8 CCA) algorithm, MCM has better accuracies, especially in cloud-shadow masking. Our preliminary tests showed that the new MCM algorithm can detect cloud and cloud-shadow for Landsat 8 in a variety of environments.

In the face of increasing climate-related impacts on coral reefs, the integration of ecosystem resilience into marine conservation planning has become a priority. One strategy, including resilient areas in marine protected area (MPA) networks, relies on information on the spatial distribution of resilience. We assess the ability to model and map six indicators of coral reef resilience—stress-tolerant coral taxa, coral generic diversity, fish herbivore biomass, fish herbivore functional group richness, density of juvenile corals and the cover of live coral and crustose coralline algae. We use high spatial resolution satellite data to derive environmental predictors and use these in random forest models, with field observations, to predict resilience indicator values at unsampled locations. Predictions are compared with those obtained from universal kriging and from a baseline model. Prediction errors are estimated using cross-validation, and the ability to map each resilience indicator is quantified as the percentage reduction in prediction error compared to the baseline model. Results are most promising (percentage reduction = 18.3%) for mapping the cover of live coral and crustose coralline algae and least promising (percentage reduction = 0%) for coral diversity. Our study has demonstrated one approach to map indicators of coral reef resilience. In the context of MPA network planning, the potential to consider reef resilience in addition to habitat and feature representation in decision-support software now exists, allowing planners to integrate aspects of reef resilience in MPA network development.

Vegetation communities are traditionally mapped from aerial photography interpretation. Other semi-automated methods include pixel- and object-based image analysis. While these methods have been used for decades, there is a lack of comparative research. We evaluated the cost-effectiveness of seven approaches to map vegetation communities in a northern Australia’s tropical savanna environment. The seven approaches included: (1). aerial photography interpretation, (2). pixel-based image-only classification (Maximum Likelihood Classifier), (3). pixel-based integrated classification (Maximum Likelihood Classifier), (4). object-based image-only classification (nearest neighbor classifier), (5). object-based integrated classification (nearest neighbor classifier), (6). object-based image-only classification (step-wise ruleset), and (7). object-based integrated classification (step-wise ruleset). Approach 1 was applied to 1:50,000 aerial photography and approaches 2–7 were applied to SPOT5 and Landsat5 TM multispectral data. The integrated approaches (3, 5 and 7) included ancillary data (a digital elevation model, slope model, normalized difference vegetation index and hydrology information). The cost-effectiveness was assessed taking into consideration the accuracy and costs associated with each classification approach and image dataset. Accuracy was assessed in terms of overall accuracy and the costs were evaluated using four main components: field data acquisition and preparation, image data acquisition and preparation, image classification and accuracy assessment. Overall accuracy ranged from 28%, for the image-only pixel-based approach, to 67% for the aerial photography interpretation, while total costs ranged from AU$338,000 to AU$388,180 (Australian dollars), for the pixel-based image-only classification and aerial photography interpretation respectively. The most labor-intensive component was field data acquisition and preparation, followed by image data acquisition and preparation, classification and accuracy assessment.

Time series of images are required to extract and separate information on vegetation change due to phenological cycles, inter-annual climatic variability, and long-term trends. While images from the Landsat Thematic Mapper (TM) sensor have the spatial and spectral characteristics suited for mapping a range of vegetation structural and compositional properties, its 16-day revisit period combined with cloud cover problems and seasonally limited latitudinal range, limit the availability of images at intervals and durations suitable for time series analysis of vegetation in many parts of the world. Landsat Image Time Series (LITS) is defined here as a sequence of Landsat TM images with observations from every 16 days for a five-year period, commencing on July 2003, for a Eucalyptus woodland area in Queensland, Australia. Synthetic Landsat TM images were created using the Spatial and Temporal Adaptive Reflectance Fusion Model (STARFM) algorithm for all dates when images were either unavailable or too cloudy. This was done using cloud-free scenes and a MODIS Nadir BRDF Adjusted Reflectance (NBAR) product. The ability of the LITS to measure attributes of vegetation phenology was examined by: (1) assessing the accuracy of predicted image-derived Foliage Projective Cover (FPC) estimates using ground-measured values; and (2) comparing the LITS-generated normalized difference vegetation index (NDVI) and MODIS NDVI (MOD13Q1) time series. The predicted image-derived FPC products (value ranges from 0 to 100%) had an RMSE of 5.6. Comparison between vegetation phenology parameters estimated from LITS-generated NDVI and MODIS NDVI showed no significant difference in trend and less than 16 days (equal to the composite period of the MODIS data used) difference in key seasonal parameters, including start and end of season in most of the cases. In comparison to similar published work, this paper tested the STARFM algorithm in a new (broadleaf) forest environment and also demonstrated that the approach can be used to form a time series of Landsat TM images to study vegetation phenology over a number of years.

Visual image interpretation and digital image classification have been used to map and monitor mangrove extent and composition for decades. The presence of a high-spatial resolution hyperspectral sensor can potentially improve our ability to differentiate mangrove species. However, little research has explored the use of pixel-based and object-based approaches on high-spatial hyperspectral datasets for this purpose. This study assessed the ability of CASI-2 data for mangrove species mapping using pixel-based and object-based approaches at the mouth of the Brisbane River area, southeast Queensland, Australia. Three mapping techniques used in this study: spectral angle mapper (SAM) and linear spectral unmixing (LSU) for the pixel-based approaches, and multi-scale segmentation for the object-based image analysis (OBIA). The endmembers for the pixel-based approach were collected based on existing vegetation community map. Nine targeted classes were mapped in the study area from each approach, including three mangrove species: Avicennia marina, Rhizophora stylosa, and Ceriops australis. The mapping results showed that SAM produced accurate class polygons with only few unclassified pixels (overall accuracy 69%, Kappa 0.57), the LSU resulted in a patchy polygon pattern with many unclassified pixels (overall accuracy 56%, Kappa 0.41), and the object-based mapping produced the most accurate results (overall accuracy 76%, Kappa 0.67). Our results demonstrated that the object-based approach, which combined a rule-based and nearest-neighbor classification method, was the best classifier to map mangrove species and its adjacent environments.

This research presents a time-effective approach for mapping streambed and riparian zone extent from high spatial resolution LiDAR derived products, i.e., digital terrain model, terrain slope and plant projective cover. Geographic object based image analysis (GEOBIA) has proven useful for feature extraction from high spatial resolution image data because of the capacity to reduce effects of reflectance variations of pixels making up individual objects and to include contextual and shape information. This functionality increases the likelihood of developing transferable and automated mapping approaches. LiDAR data covered parts of the Werribee Catchment in Victoria, Australia, which is characterized by urban, agricultural, and forested land cover types. Field data of streamside vegetation structure and physical form properties were used for both calibration of the mapping routines and validation of the mapping results. To improve the transferability of the rule set, the GEOBIA approach was developed for an area representing different riparian zone environments, i.e., urbanized, agricultural and hilly forested areas. Results show that mapping streambed extent (R2 = 0.93, RMSE = 3.6 m, n = 35) and riparian zone extent (R2 = 0.74, RMSE = 3.9, n = 35) from LiDAR derived products can be automated using GEOBIA to enable derivation of spatial information in an accurate and time-effective manner suited for natural resource management agencies.

The use of marine spatial planning for zoning multi-use areas is growing in both developed and developing countries. Comprehensive maps of marine resources, including those important for local fisheries management and biodiversity conservation, provide a crucial foundation of information for the planning process. Using a combination of field and high spatial resolution satellite data, we use an empirical procedure to create a bathymetric map (RMSE 1.76 m) and object-based image analysis to produce accurate maps of geomorphic and benthic coral reef classes (Kappa values of 0.80 and 0.63; 9 and 33 classes, respectively) covering a large (>260 km2) traditional fisheries management area in Fiji. From these maps, we derive per-pixel information on habitat richness, structural complexity, coral cover and the distance from land, and use these variables as input in models to predict fish species richness, diversity and biomass. We show that random forest models outperform five other model types, and that all three fish community variables can be satisfactorily predicted from the high spatial resolution satellite data. We also show geomorphic zone to be the most important predictor on average, with secondary contributions from a range of other variables including benthic class, depth, distance from land, and live coral cover mapped at coarse spatial scales, suggesting that data with lower spatial resolution and lower cost may be sufficient for spatial predictions of the three fish community variables.

Tree condition, pruning and orchard management practices within intensive horticultural tree crop systems can be determined via measurements of tree structure. Multi-spectral imagery acquired from an unmanned aerial system (UAS) has been demonstrated as an accurate and efficient platform for measuring various tree structural attributes, but research in complex horticultural environments has been limited. This research established a methodology for accurately estimating tree crown height, extent, plant projective cover (PPC) and condition of avocado tree crops, from a UAS platform. Individual tree crowns were delineated using object-based image analysis. In comparison to field measured canopy heights, an image-derived canopy height model provided a coefficient of determination (R2) of 0.65 and relative root mean squared error of 6%. Tree crown length perpendicular to the hedgerow was accurately mapped. PPC was measured using spectral and textural image information and produced an R2 value of 0.62 against field data. A random forest classifier was applied to assign tree condition into four categories in accordance with industry standards, producing out-of-bag accuracies >96%. Our results demonstrate the potential of UAS-based mapping for the provision of information to support the horticulture industry and facilitate orchard-based assessment and management.

Shallow coastal ecosystems are the interface between the terrestrial and marine environment. The physical and biological composition and distribution of benthic habitats within these ecosystems determines their contribution to ecosystem services and biodiversity as well as their connections to neighbouring terrestrial and marine ecosystem processes. The capacity to accurately and consistently map and monitor these benthic habitats is critical to developing and implementing management applications. This paper presents a method for integrating field survey data and high spatial resolution, multi-spectral satellite image data to map bathymetry and seagrass in shallow coastal waters. Using Quickbird 2 satellite images from 2004 and 2007, acoustic field survey data were used to map bathymetry using a linear and ratio algorithm method; benthic survey field data were used to calibrate and validate classifications of seagrass percentage cover and seagrass species composition; and a change detection analysis of seagrass cover was performed. The bathymetry mapping showed that only the linear algorithm could effectively and accurately predict water depth; overall benthic map accuracies ranged from 57–95%; and the change detection produced a reliable change map and showed a net decrease in seagrass cover levels, but the majority of the study area showed no change in seagrass cover level. This study demonstrates that multiple spatial products (bathymetry, seagrass and change maps) can be produced from single satellite images and a concurrent field survey dataset. Moreover, the products were produced at higher spatial resolution and accuracy levels than previous studies in Moreton Bay. The methods are developed from previous work in the study area and are continuing to be implemented, as well as being developed to be repeatable in similar shallow coastal water environments.

Vegetation metrics, such as leaf area (LA), leaf area density (LAD), and vertical leaf area profile, are essential measures of tree-scale biophysical processes associated with photosynthetic capacity, and canopy geometry. However, there are limited published investigations of their use for horticultural tree crops. This study evaluated the ability of light detection and ranging (LiDAR) for measuring LA, LAD, and vertical leaf area profile across two mango, macadamia and avocado trees using discrete return data from a RIEGL VZ-400 Terrestrial Laser Scanning (TLS) system. These data were collected multiple times for individual trees to align with key growth stages, essential management practices, and following a severe storm. The first return of each laser pulse was extracted for each individual tree and classified as foliage or wood based on TLS point cloud geometry. LAD at a side length of 25 cm voxels, LA at the canopy level and vertical leaf area profile were calculated to analyse tree crown changes. These changes included: (1) pre-pruning vs. post-pruning for mango trees; (2) pre-pruning vs. post-pruning for macadamia trees; (3) pre-storm vs. post-storm for macadamia trees; and (4) tree leaf growth over a year for two young avocado trees. Decreases of 34.13 m2 and 8.34 m2 in LA of mango tree crowns occurred due to pruning. Pruning for the high vigour mango tree was mostly identified between 1.25 m and 3 m. Decreases of 38.03 m2 and 16.91 m2 in LA of a healthy and unhealthy macadamia tree occurred due to pruning. After flowering and spring flush of the same macadamia trees, storm effects caused a 9.65 m2 decrease in LA for the unhealthy tree, while an increase of 34.19 m2 occurred for the healthy tree. The tree height increased from 11.13 m to 11.66 m, and leaf loss was mainly observed between 1.5 m and 4.5 m for the unhealthy macadamia tree. Annual increases in LA of 82.59 m2 and 59.97 m2 were observed for two three-year-old avocado trees. Our results show that TLS is a useful tool to quantify changes in the LA, LAD, and vertical leaf area profiles of horticultural trees over time, which can be used as a general indicator of tree health, as well as assist growers with improved pruning, irrigation, and fertilisation application decisions.

Multi-spectral imagery captured from unmanned aerial systems (UAS) is becoming increasingly popular for the improved monitoring and managing of various horticultural crops. However, for UAS-based data to be used as an industry standard for assessing tree structure and condition as well as production parameters, it is imperative that the appropriate data collection and pre-processing protocols are established to enable multi-temporal comparison. There are several UAS-based radiometric correction methods commonly used for precision agricultural purposes. However, their relative accuracies have not been assessed for data acquired in complex horticultural environments. This study assessed the variations in estimated surface reflectance values of different radiometric corrections applied to multi-spectral UAS imagery acquired in both avocado and banana orchards. We found that inaccurate calibration panel measurements, inaccurate signal-to-reflectance conversion, and high variation in geometry between illumination, surface, and sensor viewing produced significant radiometric variations in at-surface reflectance estimates. Potential solutions to address these limitations included appropriate panel deployment, site-specific sensor calibration, and appropriate bidirectional reflectance distribution function (BRDF) correction. Future UAS-based horticultural crop monitoring can benefit from the proposed solutions to radiometric corrections to ensure they are using comparable image-based maps of multi-temporal biophysical properties.

Forest structure attributes produced from terrestrial laser scanning (TLS) rely on normalisation of the point cloud values from sensor coordinates to height above ground. One method to do this is through the derivation of an accurate and repeatable digital elevation model (DEM) from the TLS point cloud that is used to adjust the height. The primary aim of this paper was to test a number of TLS scan configurations, filtering options and output DEM grid resolutions (from 0.02 m to 1.0 m) to define a best practice method for DEM generation in sub-tropical forest environments. The generated DEMs were compared to both total station (TS) spot heights and a 1-m DEM generated from airborne laser scanning (ALS) to assess accuracy. The comparison to TS spot heights found that a DEM produced using the minimum elevation (minimum Z value) from a point cloud derived from a single scan had mean errors >1 m for DEM grid resolutions

Ecological measurements in marine settings are often constrained in space and time, with spatial heterogeneity obscuring broader generalisations. While advances in remote sensing, integrative modelling and meta-analysis enable generalisations from field observations, there is an underlying need for high-resolution, standardised and geo-referenced field data. Here, we evaluate a new approach aimed at optimising data collection and analysis to assess broad-scale patterns of coral reef community composition using automatically annotated underwater imagery, captured along 2 km transects. We validate this approach by investigating its ability to detect spatial (e.g., across regions) and temporal (e.g., over years) change, and by comparing automated annotation errors to those of multiple human annotators. Our results indicate that change of coral reef benthos can be captured at high resolution both spatially and temporally, with an average error below 5%, among key benthic groups. Cover estimation errors using automated annotation varied between 2% and 12%, slightly larger than human errors (which varied between 1% and 7%), but small enough to detect significant changes among dominant groups. Overall, this approach allows a rapid collection of in-situ observations at larger spatial scales (km) than previously possible, and provides a pathway to link, calibrate, and validate broader analyses across even larger spatial scales (10–10,000 km2).