1. Quantification of EVI1 transcript levels in acute myeloid leukemia by RT-qPCR analysis: A study by the ALFA Group
- Author
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Karine Celli-Lebras, Nicolas Boissel, Aline Renneville, Xavier Thomas, Thomas Smol, Christine Terré, B. Quesnel, Alice Marceau-Renaut, Claude Preudhomme, Hervé Dombret, Sylvie Castaigne, Céline Berthon, and Olivier Nibourel
- Subjects
Adult ,Male ,Cancer Research ,Pathology ,medicine.medical_specialty ,Neoplasm, Residual ,Adolescent ,Transcription, Genetic ,Bone Marrow Cells ,Biology ,Real-Time Polymerase Chain Reaction ,Sensitivity and Specificity ,Young Adult ,Exon ,Plasmid ,Proto-Oncogenes ,medicine ,Humans ,Multicenter Studies as Topic ,splice ,RNA, Messenger ,RNA, Neoplasm ,Aged ,Randomized Controlled Trials as Topic ,Blood Cells ,Gene Expression Regulation, Leukemic ,Alternative splicing ,Myeloid leukemia ,Hematology ,Middle Aged ,Minimal residual disease ,Molecular biology ,MDS1 and EVI1 Complex Locus Protein ,Neoplasm Proteins ,DNA-Binding Proteins ,Leukemia, Myeloid, Acute ,Real-time polymerase chain reaction ,medicine.anatomical_structure ,Oncology ,Female ,Bone marrow ,Follow-Up Studies ,Transcription Factors - Abstract
EVI1 overexpression confers poor prognosis in acute myeloid leukemia (AML). Quantification of EVI1 expression has been mainly assessed by real-time quantitative PCR (RT-qPCR) based on relative quantification of EVI1-1D splice variant. In this study, we developed a RT-qPCR assay to perform quantification of EVI1 expression covering the different splice variants. A sequence localized in EVI1 exons 14 and 15 was cloned into plasmids that were used to establish RT-qPCR standard curves. Threshold values to define EVI1 overexpression were determined using 17 bone marrow (BM) and 31 peripheral blood (PB) control samples and were set at 1% in BM and 0.5% in PB. Samples from 64 AML patients overexpressing EVI1 included in the ALFA-0701 or -0702 trials were collected at diagnosis and during follow-up (n=152). Median EVI1 expression at AML diagnosis was 23.3% in BM and 3.6% in PB. EVI1 expression levels significantly decreased between diagnostic and post-induction samples, with an average variation from 21.6% to 3.56% in BM and from 4.0% to 0.22% in PB, but did not exceed 1 log10 reduction. Our study demonstrates that the magnitude of reduction in EVI1 expression levels between AML diagnosis and follow-up is not sufficient to allow sensitive detection of minimal residual disease.
- Published
- 2015