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Molasses are a source of fermentable sugars, the substrate utilized for this study, as it is a subproduct from sugarcane processing for sucrose recovery. These sugars can be metabolized for bioH 2 production by bacterial strains, particularly strict-anaerobe Clostridium acetobutylicum (Clac) and its media preparation requires chemical of O 2 removal and N 2 flushing to promote anaerobiosis. Bacillus subtilis (Bsub) can deplete O 2 from culture media and promotes anaerobiosis, which is an aspect that would benefit from further research. Clac was grown in an anaerobic medium and produced 269 mL of hydrogen at 72 h. By co-culturing Clac and Bsub , 502 mL of bioH 2 were produced in a cysteine/N 2 flushed medium, while 203 mL of bioH 2 at 72 h were produced by aerobic co-culture. Additionally, in an untreated/aerobic conventional growth culture for Clac , no production of H 2 was detected, reinforcing the utility of Bsub for anaerobiosis generation. • Clostridium acetobutylicum consumes substrate approximately 6x faster than Bacillus subtilis. • Clostridium acetobutylicum produced 202 mL of bioH 2 in a culture with anaerobiosis assisted by Bacillus subtilis. • Bacillus subtilis CBB5555 can act as a biological O 2 depleter for anaerobic bioprocesses. [ABSTRACT FROM AUTHOR]

Vibrio cholerae can form biofilms in the aquatic environment and in the human intestine, facilitating the release of hyper-infectious aggregates. Due to the increasing antibiotic resistance, alternatives need to be found. One of these alternatives is antimicrobial peptides, including polymyxin B (PmB). In this study, we first investigated the resistance of V. cholerae O1 El Tor strain A1552 to various antimicrobials under aerobic and anaerobic conditions. An increased resistance to PmB is observed in anaerobiosis, with a 3-fold increase in the dose required for 50 % growth inhibition. We then studied the impact of the PmB on the formation and the degradation of V. cholerae biofilms to PmB. Our results show that PmB affects more efficiently biofilm formation under anaerobic conditions. On the other hand, preformed biofilms are susceptible to degradation by PmB at concentrations close to the minimal inhibitory concentration. At higher concentrations, we observe an opacification of the biofilm structures within 20 min post-treatment, suggesting a densification of the structure. This densification does not seem to result from the overexpression of matrix genes but rather from DNA release through massive cell lysis, likely forming a protective shield that limits the penetration of the PmB into the biofilm. [ABSTRACT FROM AUTHOR]

Ancient microbes invented biochemical mechanisms and assembled core metabolic pathways on an anoxic Earth. Molecular oxygen appeared far later, forcing microbes to devise layers of defensive tactics that fend off the destructive actions of both reactive oxygen species (ROS) and oxygen itself. Recent work has pinpointed the enzymes that ROS attack, plus an array of clever protective strategies that abet the well known scavenging systems. Oxygen also directly damages the low-potential metal centers and radical-based mechanisms that optimize anaerobic metabolism; therefore, committed anaerobes have evolved customized tactics that defend these various enzymes from occasional oxygen exposure. Thus a more comprehensive, detailed, and surprising view of oxygen toxicity is coming into view. Reactive oxygen species (ROS) attack iron-dependent enzymes that contemporary microbes inherited from their anoxic ancestors. Microbes that adapted to live in oxic environments evolved layers of defenses against ROS, rather than discarding iron-centered metabolism. Molecular oxygen directly damages the radical species and low-potential metal centers that are critical for optimal anaerobic metabolism, and these injuries may be more important than ROS stress in constraining anaerobes to anoxic environments. Anaerobes periodically confront oxygen, and they have developed esoteric tactics to minimize injuries to some of their most vulnerable enzymes. [ABSTRACT FROM AUTHOR]

Abstract Low yield and inhibition of hydrogenase by oxygen are the main limitations for hydrogen production by microalgae. Considering the role of electron flow in the metabolism for hydrogen production, a genome-scale metabolic model (named i MM627) was reconstructed for Auxenochlorella protothecoides. i MM627 was evaluated using experimental data for growth and flux distribution. Then, considering the well-known degeneracy of FBA solutions, a new method of finding effective reactions based on multiple optimal solutions was developed. At a constant growth rate, flux distributions for maximal and minimal hydrogen production under anaerobiosis and for maximal oxygen production were compared to identify target reactions for improvement of hydrogen production and for providing anaerobiosis. Existing researches on some reactions truly confirm the predicted changes by i MM627. The main proposed strategies for improvement of hydrogen production include changes in metabolism to provide NADH. Consumption of oxygen by mitochondrial respiration and energy dissipation was proposed to provide anaerobiosis. Graphical abstract Image 1 Highlights • The first genome-scale metabolic model was reconstructed for A. protothecoides. • The model was employed as a framework to study hydrogen and oxygen production. • A new method of finding effective reactions was developed by optimal solutions. • The method was applied to find strategies for improvement of hydrogen production. [ABSTRACT FROM AUTHOR]

Abstract In the production of fuel ethanol from sugarcane in Brazilian biorefineries, one way to achieve lower production costs is the fermentation of sugars into ethanol at high temperatures (˜48 °C), which could lead to a decrease in: contamination levels, use of antibiotics, cooling costs, water usage, use of sulphuric acid in cell recycling, and energy used in distillation. Since Saccharomyces cerevisiae , the yeast species used in these biorefineries, cannot grow at these temperatures, alternative organisms need to be employed and one candidate is Kluyveromyces marxianus. Here, 20 strains belonging to this species were screened for their capacity to thrive at high temperatures (37, 45 and 48 °C) and under conditions relevant in the fuel ethanol industry: low pH (2.5), anaerobiosis, and high ethanol concentrations (up to 10%). The ethanol producing capacity of some strains was also evaluated and the ethanol yield on sugar quantified. Strains K. marxianus NCYC 3396 and UFV-3 stood out as potential microorganisms to be plugged into this industry (metabolic, evolutionary and reverse engineering will be required), since they grew better than the remaining ones under most of the conditions tested and produced ethanol at 48 °C with similar yields (0.40 g ethanol.g glucose−1) to those displayed by S. cerevisiae at 37 °C. Highlights • Four K. marxianus strains have potential to thrive in the presence of stressors found in the fuel ethanol industry in Brazil. • K. marxianus NCYC 3396 and UFV-3 were capable of growing anaerobically in complex medium. • K. marxianus NCYC 3396 and UFV-3 yielded 0.40 g ethanol.g glucose−1 at 48 °C in a synthetic medium. • Cell viability was severely jeopardized when K. marxianus UFV-3 was tested in a miniaturized industrial system above 40 °C. [ABSTRACT FROM AUTHOR]

Abstract Given the wide diversity of wild-type Chlamydomonas reinhardtii genotypes due to the presence of genes belonging to either of different gene haplotypes (Gallaher, S.D., Fitz-Gibon, S.R., Glaesener, A.G., Pellegrini, M. and Merchant, S.S. 2015, The Plant Cell, doi 10.1105/tpc.15.00508), we performed a phenotypic characterization of representative strains whose anaerobic metabolism has been studied either by our laboratory or by others. Our results reveal major differences in the levels of H 2 production and in the pattern of fermentative metabolite generation, highlighting the activation of different fermentative pathways in each organism. Some of the differences could be attributed to differences in the haplotypes of the various genes involved in these pathways. Moreover, the nature of the metabolites produced under dark anaerobiosis versus sulfur-deprivation-induced anaerobiosis are different in the analyzed strains, emphasizing the differential activation of metabolic pathways promoted under the two conditions and highlighting the importance of utilizing appropriate C. reinhardtii strains for addressing specific research questions. Highlights • A comparison of various wild-type strains of Chlamydomonas reinhardtii reveal major differences in their anaerobic metabolism. • Anaerobiosis induced by dark incubation yields different metabolites than that induced by sulfur deprivation. • Preferential activation of different fermentative pathways in each strain could be due to differences in the gene haplotypes in these reactions. [ABSTRACT FROM AUTHOR]

The African clawed frog, Xenopus laevis , can withstand extremely arid conditions through aestivation, resulting in dehydration and urea accumulation. Aestivating X. laevis reduce their metabolic rate, and rely on anaerobic glycolysis to meet reduced ATP demands. The present study investigated how severe dehydration affected the transcript levels, kinetic profile, and phosphorylation state of the key glycolytic enzyme pyruvate kinase (PK) in the liver and skeletal muscle of X. laevis . Compared to control frogs, severely dehydrated frogs showed an increase in the transcript abundance of both liver and muscle isoforms of PK. While the kinetics of muscle PK did not differ between dehydrated and control frogs, PK from the liver of dehydrated frogs had a lower K m for phosphoenolpyruvate (PEP) (38%), a lower K a for fructose-1,6-bisphosphate (F1,6P 2 ) (32%), and a greater activation of PK via F1,6P 2 (1.56-fold). PK from dehydrated frogs also had a lower phosphorylation-state (25%) in comparison to the enzyme from control frogs in the liver. Experimental manipulation of the phosphorylation-state of liver PK taken from control frogs by endogenous protein phosphatases resulted in decreased phosphorylation, and a similar kinetic profile as seen in dehydrated frogs. The physiological consequence of dehydration-induced PK modification appears to adjust PK function to remain active during a metabolically depressed state. This study provides evidence for the maintenance of PK activity through elevated mRNA levels and a dephosphorylation event which activates frog liver PK in the dehydrated state in order to facilitate the production of ATP via anaerobic glycolysis. [ABSTRACT FROM AUTHOR]

The research on anaerobic ciliates, to date, has mainly been focused on representatives of obligately anaerobic classes such as Armophorea or Plagiopylea. In this study, we focus on the anaerobic representatives of the subclass Scuticociliatia, members of the class Oligohymenophorea, which is mainly composed of aerobic ciliates. Until now, only a single anaerobic species, Cyclidium porcatum (here transferred to the genus Anaerocyclidium gen. nov.), has been described both molecularly and morphologically. Our broad sampling of anoxic sediments together with cultivation and single cell sequencing approaches have shown that scuticociliates are common and diversified in anoxic environments. Our results show that anaerobic scuticociliates represent a distinctive evolutionary lineage not closely related to the family Cyclidiidae (order Pleuronematida), as previously suggested. However, the phylogenetic position of the newly recognized lineage within the subclass Scuticociliatia remains unresolved. Based on molecular and morphological data, we establish the family Anaerocyclidiidae fam. nov. to accommodate members of this clade. We further provide detailed morphological descriptions and 18S rRNA gene sequences for six new Anaerocyclidium species and significantly broaden the described diversity of anaerobic scuticociliates. [ABSTRACT FROM AUTHOR]

Hypoxia in the root zone activates several mechanisms to cope with the energetic imbalance that triggers hypoxia. Prunus is a hypoxia-sensitive species, and there is not information about the relationship between components of the root respiration and the hypoxia tolerance. We investigated whether adjusting root respiratory components plays a role in the hypoxia tolerance in Prunus rootstocks genotypes. Three Prunus rootstocks genotypes, ‘Mariana 2624’ (tolerant), ‘CAB6P’ (moderately sensitive) and ‘Mazzard F12/1’ (sensitive), were exposed to normoxia and hypoxia in a hydroponic system for 30 days. During the first 10 days of the experiment, the hypoxia-tolerant genotype under hypoxia exhibited a higher root relative growth rate, maintained net nitrogen uptake rate, and had lower protein turnover and electrolyte leakage, as well as increased root porosity (aerenchyma formation from 0.3 to 6.0 cm from the root tip at 30 days of experiment) compared to hypoxia-sensitive genotypes. ‘Mariana 2624’ roots exhibited tolerance to hypoxia by reducing maintenance respiration by 50% compared to normoxia, while growth respiration increased. Control of root respiratory components, early response of ion uptake favors root relative growth rate, and change of the root anatomy are associated with the ability to tolerate hypoxia by reducing maintenance costs. [ABSTRACT FROM AUTHOR]

Graphical abstract Highlights • The chemical family distribution of VOC in pile was homogeneous during composting. • Concentrations of emitted VOC was not dependent on their concentrations in the pile. • Amount and chemical distribution of emitted VOC were driven by microbial activity. • Anaerobic conditions altered the chemical family distribution of emitted VOC. Abstract Composting operations taking place at municipal solid waste (MSW) treatment plants represent a source of volatile organic compounds (VOC) to the atmosphere. Understanding the variables governing the release of VOC at these facilities is crucial to assess potential health risks for site workers and local residents. In this work the changes in the VOC composition of a composting pile were monitored and compared to the VOC emmited from the same pile in order to understand the impact of composting operations on the release of VOC. More than one hundred VOC were indentified in the solid phase of the composting piles, which were dominated by terpenes (about 50% of the total amount of VOC) and in a lower quantity alcohols, volatile fatty acids and aromatic compounds. There was a reduction in the total concentration of VOC in the pile during composting, from 45 to 35 mg/kg, but the compostion and distribution of VOC families remained stable in the pile even in the mature compost. However, there was no correlation between the emitted VOC and their concentration in the composting pile. The VOC emission pattern was affected by the biological activity in the pile (measured by temperature, CO 2 evolution and the presence of CH 4 emissions). The highest VOC emissions were detected at early stages of the process, alongside with the generation of CH 4 in the pile, and then decreased sharply in the mature compost as a consequence of biodegradation and volatilisation. These results pointed to the importance of composting operation rather than the composition of the raw materials on the release of VOC in composting plants. [ABSTRACT FROM AUTHOR]

For over 50 years, metronidazole and other nitro compounds such as nitazoxanide have been used as a therapy of choice against giardiasis and more and more frequently, resistance formation has been observed. Model systems allowing studies on biochemical aspects of resistance formation to nitro drugs are, however, scarce since resistant strains are often unstable in culture. In order to fill this gap, we have generated a stable metronidazole- and nitazoxanide-resistant Giardia lamblia WBC6 clone, the strain C4. Previous studies on strain C4 and the corresponding wild-type strain WBC6 revealed marked differences in the transcriptomes of both strains. Here, we present a physiological comparison between trophozoites of both strains with respect to their ultrastructure, whole cell activities such as oxygen consumption and resazurin reduction assays, key enzyme activities, and several metabolic key parameters such as NAD(P) + /NAD(P)H and ADP/ATP ratios and FAD contents. We show that nitro compound-resistant C4 trophozoites exhibit lower nitroreductase activities, lower oxygen consumption and resazurin reduction rates, lower ornithine-carbamyl-transferase activity, reduced FAD and NADP(H) pool sizes and higher ADP/ATP ratios than wildtype trophozoites. The present results suggest that resistance formation against nitro compounds is correlated with metabolic adaptations resulting in a reduction of the activities of FAD-dependent oxidoreductases. [ABSTRACT FROM AUTHOR]

Various packaging technologies have been developed to meet continuously increasing consumer demand for comfortable and safe use, convenience of use, and fresh quality of packaged products. Porous and breathable films provide various advantages such as the minimization of anaerobiosis originating from the accumulation of CO 2 in packaging and the automatic release of steam in a microwave system. Non-porous breathable films are among the alternative candidates for packaging applications and they can respond to desired and undesired temperature fluctuations by reversibly changing the gas permeability depending on the temperature change. They can also prevent problems related to packaging integrity such as the intrusion of insects and microorganisms through perforations, undesired permeation of moisture, and loss of flavor in agricultural products and food. This review mainly addresses porous and non-porous breathable films that are responsive to stimuli like temperature changes. Further, the importance and possible packaging application areas of non-porous breathable films with temperature-dependent gas permeabilities are briefly identified. [ABSTRACT FROM AUTHOR]

Although the concept of ensiling large-round or large-square bales dates back to the late 1970s, many refinements have been made to both equipment and management since that time, resulting in much greater acceptance by small or mid-sized dairy or beef producers. This silage preservation technique is attractive to producers for several reasons, but the primary advantage is a reduced risk of weather damage to valuable forage crops compared with preservation as dry hay. Most core principles for making high-quality precisionchopped silages also apply to baled silages; among these, establishing and subsequently maintaining anaerobiosis are priorities. For baled silages, these priorities are critical, in part because recommended moisture concentrations (45 to 55%) are drier, and particle length is much longer. These factors act to restrict the rate and extent of silage fermentation, often resulting in less production of desirable fermentation acids and a greater (less acidic) final pH. Within this context, preservation of baled silages can be improved by applying polyethylene (PE) film wraps promptly, using an appropriate number of PE film layers (6 to 8), selecting a storage site free of sharp objects or other debris, and by monitoring wrapped bales closely for evidence of puncture, particularly by birds or vermin. Under certain conditions, such as those in which the bale moisture of highly buffered forages exceeds the recommended range, the heterogeneous nature of baled silages coupled with a restricted rate and extent of fermentation may increase susceptibility to clostridial activity compared with precision- chopped forages ensiled at comparable moisture concentrations. To date, research evaluating inoculants or other additives designed to improve the fermentation of challenging forages or aerobic stability has been limited, but should not be discontinued. Development of PE film embedded with an oxygen-limiting barrier has yielded positive results in some trials; however, most differences between these novel formulations and reputable commercial PE film have been related to decreases in yeast and mold counts at the surface layer. Related assessments of fermentation or nutritive value determined on a whole-bale basis have been less conclusive. Baled silages can be produced successfully by adhering to straightforward management principles; as such, this form of silage production is likely to remain popular for the foreseeable future. [ABSTRACT FROM AUTHOR]

The maintenance of the primitive Hematopoietic Stem Cells (HSC) in course of ex vivo expansion is a critical point to preserve the long-term reconstituting capacity of a hematopoietic graft. On the basis of the numerous experimental results, the maintenance of primitive HSC is related to their specific metabolic profile shifted towards the anaerobiosis. Hence, in addition to the exposition of the cultures to more appropriate, physiologically low O 2 concentrations (usually misleadingly termed “hypoxia”), a specter of “hypoxia-mimicking” factors (cytokines, growth factors, receptor-ligands, antioxidants) can be applied to maintain this specific metabolic profile enabling an appropriate genetic and epigenetic regulation. Some factors already proved to be able to achieve this goal and “hypoxia-mimicking” ex vivo cultures were already used to produce cells for clinical trials. In this article we are discussing the approaches aimed to amplify and/or to condition the HSC, based on the manipulation of energetic metabolism properties. [ABSTRACT FROM AUTHOR]

We report discovery of a new lineage of anaerobic marine amoebae and amoeboflagellates, Anaeramoeba gen. nov., represented by six newly described species. The trophic form of Anaeramoeba spp. is an amoeba corresponding to the uncommon flabellate or flamellian morphotype – it is fan-shaped and produces an anterior, flattened hyaline zone and posterior hyaline projections. In contrast to other representatives of these morphotypes, cells of Anaeramoeba spp. possess acristate mitochondrion-related organelles associated with prokaryotic symbionts, and a large acentriolar centrosome. Surprisingly, two Anaeramoeba species form morphologically unique flagellates with two or four isokont, thickened flagella. Phylogenetic analyses of the SSU rRNA gene showed that Anaeramoeba spp. form a clade, which is not robustly related to any other eukaryotic lineage. We accommodate Anaeramoeba in a new family Anaeramoebidae, which we classify as Eukaryota incertae sedis. [ABSTRACT FROM AUTHOR]

A balanced gut microbiota is important for health, but the mechanisms maintaining homeostasis are incompletely understood. Anaerobiosis of the healthy colon drives the composition of the gut microbiota towards a dominance of obligate anaerobes, while dysbiosis is often associated with a sustained increase in the abundance of facultative anaerobic Proteobacteria , indicative of a disruption in anaerobiosis. The colonic epithelium is hypoxic, but intestinal inflammation or antibiotic treatment increases epithelial oxygenation in the colon, thereby disrupting anaerobiosis to drive a dysbiotic expansion of facultative anaerobic Proteobacteria through aerobic respiration. These observations suggest a dysbiotic expansion of Proteobacteria is a potential diagnostic microbial signature of epithelial dysfunction, a hypothesis that could spawn novel preventative or therapeutic strategies for a broad spectrum of human diseases. [ABSTRACT FROM AUTHOR]

Studying hematopoietic and mesenchymal stem cells for almost three decades revealed some similarities between the stem cell entity and the single-celled eukaryotes exhibiting the anaerobic/facultative aerobic metabolic features. A careful analysis of nowadays knowledge concerning the early eukaryotic evolution allowed us to reveal some analogies between stem cells in the metazoan tissues and the single-celled eukaryotes which existed during the first phase of eukaryotes evolution in mid-Proterozoic era. In fact, it is possible to trace the principle of the self-renewal back to the first eukaryotic common ancestor, the first undifferentiated nucleated cell possessing the primitive, mostly anaerobically-respiring mitochondria and a capacity to reproduction by a simple cell division “à l’identique”. Similarly, the diversification of these single-cell eukaryotes and acquiring of complex life cycle allowed/conditioned by the increase of O 2 in atmosphere (and consequently in the water environment) represents a prototype for the phenomenon of commitment/differentiation. This point of view allowed to predict the ex-vivo behavior of stem cells with respect to the O 2 availability and metabolic profile which enabled to conceive the successful protocols of stem cell expansion and ex vivo conditioning based on “respecting” this relationship between the anaerobiosis and stemness. In this review, the basic elements of this paradigm and a possible application in cell engineering were discussed. [ABSTRACT FROM AUTHOR]

A two months common garden experiment was carried out to explore the potential differences of energy metabolism in northern core (France, 50°N and 47°N) vs southern peripheral (Portugal, 41°N) populations of European flounder Platichthys flesus , submitted to cold condition (CC: water temperature = 10 °C) and to warm and hypoxic condition (WHC: water temperature = 22 °C, and moderate hypoxia with O 2 saturation = 40% during the last 6 days). Convergent growth rates (in length) were observed in the different populations and conditions, when the southern peripheral population of Portugal did not grow under cold conditions. A general reduction in liver lipid storage was observed in all populations subjected to WHC when compared to CC, whereas muscle lipid storage was unaffected. The thermal and hypoxia treatment induced changes in muscle phospholipids (PL) ratios: phosphatidylserine/PL, phosphatidylinositol/PL, between northern and southern populations. Fish from northern estuaries displayed marked anaerobiosis in WHC (increased liver LDH activity) vs marked aerobiosis under CC (higher muscle CS and CCO activities). Contrariwise, fish from the southern estuary displayed equilibrium between anaerobiosis and aerobiosis activities in WHC. Flounders from the southern population exhibited generally lower G6PDH activity (proxy for anabolism and for defense against oxidative damage), tissue-specific anaerobiosis response (muscle LDH activity) and lower CS and CCO muscle activities (aerobiosis markers) when compared to northern populations. Globally, these inter-population differences in bioenergetics suggest that southern peripheral vs northern core populations have developed differential capacity to cope with interacting stressors and that much of this variation is more likely due to local adaptation. [ABSTRACT FROM AUTHOR]

Corynebacterium glutamicum is known to produce organic acids under anaerobic culture conditions, in particular, lactic, succinic, and acetic acids. Our study is focused on acetic and succinic acid production using a lactate dehydrogenase-deficient strain of C. glutamicum . Usually, with this bacterium, the organic acid production process is based on an initial aerobic growth phase, followed by a rapid deoxygenation and an anaerobic production phase. In our study, we demonstrated that this strategy was unfavorable for the production of organic acids. Conversely, we showed that applying the best transition strategy based on progressive deoxygenation significantly increased the concentration of organic acids up to 640%. This was observed either by applying controlled dissolved oxygen concentrations or by decreasing the steps of gas flow rates. Our results also showed that applying constant oxygen transfer flux throughout the culture, and thus in the absence of the anaerobic phase, promoted constant production yields (approximately 0.5 mol of succinate or acetate per mole of glucose). In this case, acetate production (120 mM) was favored over succinate production (132 mM), resulting in a decrease in the molar ratio of products (succinate/acetate) from 4.8 to 1.1 between progressive deoxygenation and constant OTR cultures. [ABSTRACT FROM AUTHOR]

Anaerobiosis, critical for successful ensilage, constitutes a challenge in baled silages. The loss of complete anaerobiosis causes aerobic deterioration and silages undergo dry matter and nutrient losses, pathogen growth, and mycotoxin production. Silage may represent an ideal substrate for Listeria monocytogenes, a pathogen of primary concern in several cheeses. The aim of this research was to investigate the occurrence of Listeria in baled silage fed to cows producing milk for a protected designation of origin cheese, and to characterize isolates by repetitive sequence-based PCR. Listeria spp. were detected in 21 silages and L. monocytogenes in 6 out of 80 of the analyzed silages; 67% of positives were found in molded zones. Results of the PCR typing showed genotypic homogeneity: 72.9 and 78.8% similarity between strains of Listeria spp. (n = 56) and L. monocytogenes (n = 24), respectively. Identical profiles were recovered in molded and nonmolded areas, indicating that contamination may have occurred during production. The application of PCR allowed the unambiguous identification of Listeria isolated from baled silages, and repetitive sequence-based PCR allowed a rapid and effective typing of isolates. Results disclose the potential of the systematic typing of Listeria in primary production, which is needed for the understanding of its transmission pathways. [ABSTRACT FROM AUTHOR]

Using Escherichia coli for installing and maintaining anaerobiosis for hydrogen production by Clostridium acetobutylicum ATCC 824 is a cost-effective approach for industrial hydrogen production, as it does not require reducing agents or sparging with inert gases. This study was devoted for investigating the feasibility for installing and maintaining anaerobiosis of hydrogen production by C. acetobutylicum ATCC 824 when using E . coli HD701 utilizable versus non utilizable sugars as a-carbon source. Using E. coli HD701 for installing anaerobiosis showed a comparable hydrogen production yield and efficiency to the use of reducing agents and nitrogen sparging in case of hydrogen production from the E . coli HD701 non utilizable sugars. In contrast, using E . coli HD701 for installing anaerobiosis showed a lower hydrogen production yield and efficiency than the use of reducing agents and nitrogen sparging in case of using glucose as a substrate. This is possibly because E . coli HD701 when using glucose compensate for the substrate, and produce hydrogen with lower efficiency than C . acetobutylicum ATCC 824. These results indicated that the use of E . coli HD701 for installing anaerobiosis would not be economically feasible when using E . coli HD701 utilizable sugars as a carbon source. In contrast, the use of this approach for installing anaerobiosis for hydrogen production from sucrose and starch would have a high potency for industrial applications. [ABSTRACT FROM AUTHOR]

Previously, we found that marine Chlorella pyrenoidosa strain IOAC707S could generate hydrogen (H 2 ) under nitrogen deprivation in seawater medium, without dark incubation, N 2 flushing or addition of protonophore. In this work, the H 2 yield of C. pyrenoidosa was enhanced, and the mechanism of H 2 photoproduction was investigated. It was found that C. pyrenoidosa could produce H 2 under hypoxic conditions, which indicated the hydrogenase of C.pyrenoidosa could tolerate a low concentration of O 2 . Nitrogen deprivation could lower the efficiency of photosyntem (PS) II photochemical activity and PSII oxygenic activities, which were favorable for rapid establishment of anoxia and efficient H 2 photoproduction, and thus significantly enhance H 2 photoproduction of C. pyrenoidosa . Pre-culture in nitrogen-deprived medium could further increase the H 2 yield of C. pyrenoidosa , for its more severe inhibition of the oxygen-evolving complex, electron transport and photochemical efficiency of PSII, and PSII oxygenic activities, which facilitated the establishment of anaerobiosis and activation of hydrogenase. [ABSTRACT FROM AUTHOR]

Poultry litter (PL) was pre-treated in order to reduce its nitrogen content and to increase the C/N ratio. The pre-treatment consisted of a first anaerobiosis phase of about 60 days in order to accumulate ammonia nitrogen, followed by an ammonia stripping phase by heating the substrate at 80 °C for 24 h. The digestion was performed with PL and pre-treated PL (TPL) after ammonia stripping as mono-substrate under four total solids loads, i.e. 5%, 10%, 15% and 20%. The TPL after ammonia stripping displayed lower ammonia (62–73%) and VFA (41–65%) concentrations compared to digesters with raw PL, while bio-methane yield increased about 8–124%. Bio-methane yields in the series with TPL after ammonia stripping were about 193, 196, 215 and 147 L CH 4 /kg COD , based on the COD added, for 5%, 10%, 15% and 20% TS load, respectively. The results indicate that lowering nitrogen content using the suggested process improves bio-methane yields significantly. [ABSTRACT FROM AUTHOR]

A loss of flavor quality often occurs with some varieties of mandarins ( Citrus reticulata Blanco) following waxing and storage. This is thought to be due to the synthesis of ethyl esters which is stimulated by an accumulation of ethanol in the fruit as a result of anaerobic metabolism. The goal of this study was to determine the importance of postharvest ethyl ester accumulation to mandarin flavor in two important commercial mandarin varieties that differ in ethanol accumulation patterns. This study also aimed to enhance knowledge regarding the importance of ethanol accumulation to ethyl ester synthesis and overall flavor. In order to do this, comparisons were made between ‘Pixie’ (P) and ‘Gold Nugget’ (GN), mandarins that were previously identified as accumulating high and low amounts of ethanol, respectively, after waxing. In three of four harvests (H) at two different locations, P accumulated much higher concentrations of ethanol than GN after waxing and storage for 3 weeks at 5 °C and 1 week at 20 °C. Sensory panel analysis indicated that off-flavor development during storage was more pronounced in P than GN as were declines in overall acceptability. Flavor in fruit from Ojai, California (H4) was less negatively impacted by storage than fruit from the San Joaquin Valley of California (H1, H2, H3), for both varieties. Consistent with prior research, alcohols, esters and aldehydes were greatly altered in amount as a result of waxing and storage, with ethanol and the ethyl esters being the most prominent compounds, although ethyl ester concentration did not consistently relate to the amount of ethanol present. In H1 P had higher ethanol following storage than GN and correspondingly higher ethyl esters, while in H2 and H3 GN had significantly higher ethyl ester concentrations than P but did not have higher ethanol. Fruit from H4 had similar volatile concentrations between the varieties but ethanol was higher in P than GN. Internal oxygen concentrations in Pixie after waxing were lower than those in GN and likely were largely responsible for the greater ethanol accumulation observed in P. Following storage P tended to have higher pyruvate concentration and alcohol dehydrogenase (ADH) activity, while differences in pyruvate decarboxylase (PDC) activity were not consistent across harvests. Although the impact of waxing and storage on flavor was more negative for P than GN, the cause of this could not be simply ascribed to the greater tendency of P than GN to produce ethanol that in turn led to greater ethyl ester accumulation. [ABSTRACT FROM AUTHOR]

Mofette fields, i.e. geogenic, cold CO2-exhaling gas vents occurring naturally in regions of tectonic or volcanic disturbances provide an excellent opportunity to investigate long-term responses of the soil biota to increased CO2 concentrations. The upper centimeters of mofette soils present a small-scale mosaic of different CO2 and O2 concentrations: From up to 100% CO2 and 0% O2 around local degassing vents to ambient soil atmosphere (<2% CO2). The present field study investigated the influence of CO2 on the community structure of Collembola as representatives of the air-filled fraction of the pore system and of Nematoda as inhabitants of soil water films. Canonical correspondence analyses revealed strong correlations between soil faunal communities and environmental measures, above all CO2 concentration, organic matter content and plant coverage. An increase in CO2 concentration was followed by a steady decline in collembolan and nematode species richness and collembolan densities, but below a threshold of 62% CO2 had no significant effect on overall nematode densities. Collembolans developed viable populations at up to 20% CO2, where some mofettophilous species had their highest densities and frequencies, but other more general species also occurred (66% of overall collembolan densities). Nematodes, on the other hand, maintained individual-rich populations at up to 62% CO2, but above 20% CO2 nematode communities consisted almost entirely (97.6%) of three mofettophilous species: one feeding on bacteria, one on fungi and one on plant roots. Likely a combination of active and passive life phases together with temporal and micro-scale changes in environmental conditions allows survival of few mofettophilous species under CO2 conditions too extreme for most other species. The finding that mofettophilous species maintained denser populations in high CO2 patches, with species optima between 3% and 40% CO2, indicates that they even profit from CO2 degassing, presumably via changes in food supply or due to the lack of competitors. [ABSTRACT FROM AUTHOR]

The impact of physicochemical conditions observed in cystic fibrosis (CF) lung on colistin activity against both planktonic and biofilm P . aeruginosa cells was evaluated. MIC, minimum bactericidal concentration (MBC), and minimum biofilm eradication concentration (MBEC) values were assessed against 12 CF strains both under “CF-like” (anaerobiosis, pH 6.4) and “standard” (aerobiosis, pH 7.4) conditions. The activity of colistin was significantly higher under “CF-like” conditions compared to “standard” ones, both against planktonic (MIC 90 : 1 and 4 μg/mL, respectively) and biofilm (MBEC 90 : 512 and 1.024 μg/mL, respectively) cells, as confirmed by scanning electron microscopy. Improved activity was not related to biofilm matrix amount. It may be necessary to adequately “rethink” the protocols used for in vitro assessment of colistin activity, by considering physicochemical and microbiological features in the CF lung at the site of infection. This could provide a more favorable therapeutic index, rationale for administration of lower doses, probably resulting in reduced toxicity and emergence of resistant clones. [ABSTRACT FROM AUTHOR]

The facultative protist Euglena gracilis , a heavy metal hyper-accumulator, was grown under photo-heterotrophic and extreme conditions (acidic pH, anaerobiosis and with Cd 2+ ) and biochemically characterized. High biomass (8.5 × 10 6 cells mL −1 ) was reached after 10 days of culture. Under anaerobiosis, photosynthetic activity built up a microaerophilic environment of 0.7% O 2 , which was sufficient to allow mitochondrial respiratory activity: glutamate and malate were fully consumed, whereas 25–33% of the added glucose was consumed. In anaerobic cells, photosynthesis but not respiration was activated by Cd 2+ which induced higher oxidative stress. Malondialdehyde (MDA) levels were 20 times lower in control cells under anaerobiosis than in aerobiosis, although Cd 2+ induced a higher MDA production. Cd 2+ stress induced increased contents of chelating thiols (cysteine, glutathione and phytochelatins) and polyphosphate. Biosorption (90%) and intracellular accumulation (30%) were the mechanisms by which anaerobic cells removed Cd 2+ from medium, which was 36% higher versus aerobic cells. The present study indicated that E. gracilis has the ability to remove Cd 2+ under anaerobic conditions, which might be advantageous for metal removal in sediments from polluted water bodies or bioreactors, where the O 2 concentration is particularly low. [ABSTRACT FROM AUTHOR]

The genome-scale metabolic flux modeling of anaerobic metabolism relevant to biotechnology has recently expanded in focus. In particular, there is interest in modeling facultative anaerobes (including yeast) to learn how to effectively eliminate microaerobic environments in favor of anaerobiosis. This is advantageous to bioprocessing and maximizes product formation from metabolic pathways that require substantial reducing power. Recent modeling efforts have also focused on CO/CO 2 and lignocellulosic sugar utilization for the production of advanced biofuels and chemicals. Several genome-scale models (GEMs), representing diverse metabolic traits, now exist for the non-pathogenic clostridia, methanogen, and Geobacter spp. obligate anaerobes, and microbial consortia interactions are now being modeled. Several new modeling tools to automate GEM construction, incorporate −omics datasets, and derive metabolic engineering strategies can now apply to anaerobiosis. [ABSTRACT FROM AUTHOR]

The aim of this study was to compare the effect of mesophilic anaerobic digestion with aerobic storage on the survival of selected indigenous microorganisms and microbial groups in blackwater, including the effect of addition of Greenlandic Halibut and shrimp offal. The methane yield of the different substrate mixtures was determined in batch experiments to study possible correlation between methanogenic activity in the anaerobic digesters and reduction of indigenous microorganisms in the blackwater. By the end of the experiments a recovery study was conducted to determine possible injury of the microorganisms. In both anaerobic and aerobic samples, survival of Escherichia coli was better in the presence of Greenlandic Halibut offal when compared to samples containing blackwater only and blackwater and shrimp offal, possibly due to more available carbon in the samples containing Greenlandic Halibut offal. Reduction of faecal streptococci was large under both anaerobic and aerobic conditions, and the results indicated a complete removal of faecal streptococci in the anaerobic samples containing blackwater and a mixture of blackwater and shrimp offal after 17 and 31 days, respectively. Amoxicillin resistant bacteria were reduced in the anaerobic samples in the beginning of the study but increased towards the end of it. The opposite pattern was observed in the aerobic samples, with a growth in the beginning followed by a reduction. During the anaerobic digestion tetracycline resistant bacteria showed the least reduction in the mixture of blackwater and shrimp offal, which had the lowest methane yield while the highest reduction was observed in the mixture of blackwater and Greenlandic Halibut, where the highest methane yield was measured Reduction of coliphages was larger under anaerobic conditions. Addition of fish offal had no effect on survival of coliphages. The results of the recovery study indicated that a fraction of the E. coli in the aerobic blackwater sample and of the faecal streptococci in both the anaerobic and aerobic samples containing blackwater and Greenlandic Halibut were injured only, and thus able to resuscitate during recovery. The use of anaerobic digestion in the Arctic is limited to substrate types like those tested in this study because of absence of agriculture. The results indicate that anaerobic digestion of wastewater could benefit from the addition of fish offal, with respect to both microbial reduction and energy production. [ABSTRACT FROM AUTHOR]

A new chemically defined liquid medium, MODS, was developed for the aerobic growth and anaerobic growth and sporulation of Bacillus cereus strains. The comparison of sporulation capacity of 18 strains of B. cereus has shown effective growth and spore production in anaerobiosis.. [ABSTRACT FROM AUTHOR]

Changes in the energetic metabolism were studied in the fan mussel Pinna nobilis L. exposed to environmental and anthropic stress. The high polymorphism of enzymes suggests an adaptation of the fan mussel to environmental variability peculiar of transitional waters with respect to the same species living in exposed coastal sea. The electrophoretic patterns showed a predominance of LDH-A4 and the presence of both mitochondrial and cytosolic MDH isozymes. Moreover, in all the analyzed tissues and organs, MDH activity was greater than the LDH one. Metabolic plasticity of the fan mussel is further highlighted by octopine dehydrogenase and superoxide dismutase electrophoretic patterns, showing the presence of many isoforms. These evidences are also confirmed by spectroscopic determinations of alanopine, tauropine, strombine and octopine dehydrogenase activity characterized by a specific trend due to environmental variability. Specific variations in anaerobic capacity of P. nobilis L. are discussed in relation to their distribution according to the marine-brackish gradient. [ABSTRACT FROM AUTHOR]

We report the light-microscopic morphology and ultrastructure of a novel free-living, heterotrophic protist, Creneis carolina gen. et sp. nov. isolated from marine anoxic sediments. C . carolina is a heterotrophic, obligately anaerobic amoeboid flagellate, and superficially resembles Mastigamoeba (Amoebozoa: Archamoebae) or Breviata (Breviatea) by possessing a single anterior flagellum closely associated with the nucleus, and because it appears to be an anaerobe. However, its life cycle contains multiflagellate cells with an unusual morphology. The structure of the mastigont of C . carolina is unique and not readily comparable with any eukaryotic group. Unexpectedly, phylogenetic analyses of SSU rDNA and of a concatenate of α- and β-tubulin genes with SSU rDNA convincingly showed that C . carolina is a member of Heterolobosea and belongs to the taxon Tetramitia. [ABSTRACT FROM AUTHOR]

Highlights: [•] Cu exposure affects the level of free energy in clam hemolymph. [•] Contents of major energy stores in tissues were not affected by Cu exposure. [•] Cu exposure increases clam reliance upon anaerobic energy production. [Copyright &y& Elsevier]

Abstract: The aim of this study was to understand the enhancement mechanism of H2 photoproduction in Chlorella protothecoides under simultaneous nitrogen limitation and sulfur deprivation (LNS). Nitrogen limitation (LN) rather than sulfur deprivation significantly inhibited relative variable fluorescence at K-step (W K) and J-step (V J), photochemical efficiency of PSII (photosystem II), F v/F m, during the process of incubation in the light. Under such conditions, photosynthetic O2 evolution decreased and the anaerobiosis was established after 12 h of incubation. The algae generated large amounts of H2 under nitrogen limitation but generated only trace amounts under sulfur deprivation. Obviously, nitrogen limitation rather than sulfur deprivation was the decisive factor that induced H2 photoproduction in C. protothecoides under LNS. The LNS culture generated much more H2 than the LN culture in the presence of DCMU during incubation, suggesting that a PSII-independent electron source contributed many more electrons for transfer to hydrogenase in the LNS culture. PSII electron transport includes linear electron flow (LEF) and cyclic electron flow (CEF) of PSII in C. protothecoides. In the PSII-dependent electron source for H2 photoproduction, PSII supplies electrons to hydrogenase through the LEF. The LNS culture showed much higher LEF and lower CEF than the LN culture during the H2 photoproduction phase, as indicated by the large lower quantum yield of PSII electron transport (Φ PSII) in the LNS culture in the presence of DCMU. Therefore, compared with nitrogen limitation, simultaneous nitrogen limitation and sulfur deprivation enhanced H2 photoproduction in C. protothecoides mainly due to enhanced PSII-dependent and -independent electron sources. [Copyright &y& Elsevier]

Active chloride secretion, measured as short-circuit current (Isc ) in ionocytes of opercular epithelia (OE) in the eurythermic, euryoxic, and euryhaline killifish or mummichog (Fundulus heteroclitus) was studied in cold (5°C) and warm (20°C) acclimated fish to determine if homeoviscous adaptation aided chloride secretion in the cold. Isolated opercular epithelia were cooled from 30°C to 0.2°C for warm and cold acclimated fish; from 30 to 8°C, Isc decreased with Q10 =1.68 for warm and Q10 =1.56 for cold acclimated tissues. By Arrhenius plots, there is a critical temperature, 8°C, below which aerobic Isc decreased sharply (Q10 =6.90 for warm and 4.23 for cold acclimated tissues), suggesting a shift in mitochondrial efficiency of oxidative phosphorylation. In anaerobic conditions (0.5mM NaCN; N2 saturation), chloride transport continued at a lower rate, and Isc decrease with cooling below 8°C was less pronounced (Q10 =2.95 for warm and 3.08 for cold), suggesting a shift in transporter function in plasma membrane. Under anaerobic conditions, NaCl secretion at 20°C was reversibly inhibited by hypotonic shock, indicating normal regulation of transport. Chloride secretion in warm-acclimated fish was supported mostly (75% at 20°C) by aerobic metabolism, whereas that for cold-acclimated fish was lower (55% at 20°C), suggesting a greater reliance on anaerobic metabolism in the cold. Once acclimated to cold, ionocytes may be temporarily incapable of increasing their aerobic ATP supply, even when warmed to 30°C. In cold acclimated fish there was increased polyunsaturated fatty acid composition of gill epithelium (consistent with homeoviscous adaptation) and gill remodeling, wherein epithelial cells filled the interlamellar space (interlamellar cell mass, ILCM) by as much as 70%, thus increasing diffusion distance against passive ion gain. Most ionocytes in these thickened epithelial masses became taller, still connecting basal lamina with the environment, consistent with the continuing transport rates at low temperatures. Whereas the low aerobic scope of cold-acclimated fish and thickened gill epithelium is appropriate to winter inactivity, metabolic depression and anaerobiosis, the large aerobic scope of warm-acclimated fish favors active foraging at high temperatures. [ABSTRACT FROM AUTHOR]

Abstract: Bacillus cereus OhrR is a member of the subgroup of the MarR (multiple antibiotic resistance) family of transcriptional regulators that use a cysteine-based redox sensing mechanism. OhrA is a thiol-dependent, peroxidase-like protein. The dual OhrRA system triggers B. cereus adaptation in response to redox changes, such as those encountered in the environment of the gastrointestinal tract. Here, we investigated the role of OhrRA in toxinogenesis. Comparative shotgun analysis of exoproteomes from ∆ohrA, ∆ohrR and wild-type cells revealed significant changes in the abundance levels of toxin-related proteins depending on the extracellular redox potential. We complemented these data by measuring the DNA binding activity of reduced and oxidized recombinant OhrR on toxin and putative toxin promoter regions. Furthermore, transcriptomic data and OhrRA-dependent, antiproliferative activity of the B. cereus exoproteome on Caco-2 human epithelial cells were recorded. The results indicate that OhrR controlled toxin gene expression directly or indirectly in a redox- and toxin-dependent manner, and may function as a repressor or an activator. Moreover, we found that OhrR restricts toxin-dependent antiproliferative activity of the B. cereus exoproteome whatever the growth conditions, while the restrictive impact of OhrA occurs only under low ORP anoxic conditions. Biological significance: B. cereus is a notorious foodborne pathogen which causes gastroenteritis. Fatal and severe cases have been reported. The pathogenicity of B. cereus is intimately associated with the production of epithelial cell-destructive toxins in the small intestine. The small intestine poses several challenges for a pathogen because it is sliced into various niches with different oxygen concentrations and different redox potentials. We recently showed that the organic hydroperoxide resistance OhrRA system was crucial to the successful adaptation of B. cereus to extreme redox environments such as those encountered in the lumen (high reducing anoxic environment) and on the intestinal epithelium (transient oxic environment). Here we provide evidence that this bacterial system is a major virulence determinant in B. cereus in that it coordinates toxinogenesis in a redox dependent manner. Specifically, our comparative exoproteomic analyses reveal that OhrR strongly restricts B. cereus toxinogenesis under high reducing anoxic conditions while OhrA boosts toxinogenesis. Based on exoproteomic analyses, we further examined the role of OhrR and found that it functions as a redox-dependent transcriptional regulator of toxin and putative toxin genes. These findings provide novel insights into the weapons used by B. cereus to control its toxinogenic potential and, as a result its toxicity against human epithelial cells. [Copyright &y& Elsevier]

Abstract: Fermented or acidified vegetable foods are considered microbiologically safe although the survival of certain pathogens has occasionally been reported in these products. The aim of this research was to investigate the fate of Escherichia coli, Salmonella enterica, Listeria monocytogenes and Staphylococcus aureus when they were added to different industrial olive brines, as well as to correlate their survival with the presence of phenolic and oleosidic substances. Brines of different cultivars prepared following the Spanish-style method or preserved in acidified brine were inoculated with a cocktail of four strains of each species. The evolution of their populations was analyzed by cultural methods when the brines were kept at 4 °C or room temperature and in aerobiosis or anaerobiosis. All the pathogens investigated died off but their death rate was variable depending on the composition of the brines in phenolic compounds, temperature and oxygen availability. The time needed to reduce the inoculated pathogen populations by 5 log oscillated between less than 5 min and up to 17 days in the least deleterious conditions. [Copyright &y& Elsevier]

Abstract: VFAs can be obtained from lignocellulosic agro-industrial wastes, sludge, and various biodegradable organic wastes as key intermediates through dark fermentation processes and synthesized through chemical route also. They are building blocks of several organic compounds viz. alcohol, aldehyde, ketones, esters and olefins. These can serve as alternate carbon source for microbial biolipid, biohydrogen, microbial fuel cells productions, methanisation, and for denitrification. Organic wastes are the substrate for VFA platform that is of zero or even negative cost, giving VFA as intermediate product but their separation from the fermentation broth is still a challenge; however, several separation technologies have been developed, membrane separation being the most suitable one. These aspects will be reviewed and results obtained during anaerobic treatment of slaughterhouse wastes with further utilisation of volatile fatty acids for yeast cultivation have been discussed. [Copyright &y& Elsevier]

Abstract: Immersed membrane bioreactor (IMBR) has emerged as a novel potential technology which is considered globally as potent technology, primarily for wastewater treatment. It offers quality improvement in effluents treatment compared to other technological systems. It also offers potential benefits for the bioprocesses where product formation and separation is desired simultaneously in a compact container. This review gives insight for the wide range applications of IMBR focussing on anaerobiosis. It discusses the significance, advantages and drawbacks of IMBR against the conventional methods, highlighting the external membrane bioreactors. While the commercial significance of IMBR is obvious for industrial and municipal wastewater treatment, the current focus is shifting on other applications such as anaerobic bioprocesses. Though the IMBR technology is generally considered hand-in-hand as sustainable technology, the major bottleneck in its application at commercial scale for wastewater treatment seems its economic feasibility and compatibility. Among the technical issues, the membrane fouling is considered as a major problem for which several strategies have been developed to overcome the problem, though there is no complete or universal solution to this problem. [Copyright &y& Elsevier]

Abstract: Lactate dehydrogenase (LDH) is the terminal enzyme of anaerobic glycolysis and key to hypoxia/anoxia survival by most animals. In this study, the effects of anoxic submergence (20h at 7°C in nitrogen-bubbled water) were assessed on LDH from liver of an anoxia-tolerant freshwater turtle, the red-eared slider (Trachemys scripta elegans). Liver LDH from aerobic and anoxic turtles was purified to homogeneity in two steps. The kinetic properties and thermal stability of purified LDH were analyzed, revealing significant differences between the two enzyme forms in Vmax, Km pyruvate, and I50 pyruvate as well as melting temperature determined by differential scanning fluorimetry. The phosphorylation state of aerobic and anoxic forms of LDH was visualized by ProQ Diamond phosphoprotein staining, the results indicating that the anoxic form had a higher phosphorylation state. Incubation studies that promoted protein kinase versus protein phosphatase actions showed that changes in the phosphorylation state of aerobic and anoxic forms mimicked the anoxia-responsive changes in Km pyruvate and I50 pyruvate. The high phosphate form of liver LDH that occurs in anoxic turtles appears to be a less active form. Turtle liver LDH was also subject to another form of posttranslational modification, protein acetylation, with a 70% higher content of acetylated lysine residues on anoxic versus aerobic LDH. This is the first study to show that LDH function in an anoxia-tolerant animal can be differentially modified between aerobic and anoxic states via the mechanism of posttranslational modification. [Copyright &y& Elsevier]

Abstract: Oral microbial habitat is composed of wide variety of species. These species play a significant role in maintaining the well being of the oral cavity by contributing in various ways. However the proper functioning of these oral microbes can be detrimental for the human oral cavity if the conditions are not suitable such as redox potential (Eh), pH of a site, the activity of the host defenses, and the presence of antimicrobial agents. The oral microbial community represents the best-characterized group associated with the human host. There are strong correlations between the qualitative composition of the oral microbiota and clinically healthy or diseased states. Amongst the bacteria of more than 700 species now identified within the human oral microbiota, it is the streptococci that are numerically predominant. Interactions between mucosal surfaces and microbial microbiota are key to host defense, health, and disease. These surfaces are exposed to high numbers of microbes and must be capable of distinguishing between those that are beneficial or avirulent and those that will invade and cause disease. Our understanding of the mechanisms involved in these discriminatory processes has recently begun to expand as new studies bring to light the importance of epithelial cells and novel immune cell subsets such as T(h)17 T cells in these processes. In this review article we have tried to find out the factors responsible for maintaining oral microbial habitat intact and the reasons which cause changes in its composition. [Copyright &y& Elsevier]

Abstract: The essence of this study was to investigate the metabolic responses of heart tissues of carpet-shell clam Ruditapes decussatus after exposure to two doses (0.2 and 1g/L) of Roundup® during 24 and 72h. The main metabolic changes after Roundup® exposure were related to disturbance in energy metabolism and metabolic biomarkers such as alanine, succinate, acetate and propionate, suggesting the occcurence of anaerobiosis and the impairment of oxydative metabolism. Results showed also that peak intensities of amino acids used as biomarker of anaerobiosis in molluscs are time and dose dependent. In the opposite, phosphoarginine and ATP level are dependent to Roundup® concentration rather than to the time of exposure. We suggest that changes in energy demands require adjustements in the forward arginine kinase reaction rate. Therefore, the results demonstrate the high applicability of HRMAS NMR to elucidate the mechanism of toxicity of Roundup®. In addition, 31P HRMAS NMR appeared to be an effective and simple method to follow bioaccumulation of Roundup® formulation. [Copyright &y& Elsevier]

Abstract: Energy balance is a fundamental requirement of stress adaptation and tolerance. We explore the links between metabolism, energy balance and stress tolerance using aquatic invertebrates as an example and demonstrate that using key parameters of energy balance (aerobic scope for growth, reproduction and activity; tissue energy status; metabolic rate depression; and compensatory onset of anaerobiosis) can assist in integrating the effects of multiple stressors and their interactions and in predicting the whole-organism and population-level consequences of environmental stress. We argue that limitations of both the amount of available energy and the rates of its acquisition and metabolic conversions result in trade-offs between basal maintenance of a stressed organism and energy costs of fitness-related functions such as reproduction, development and growth and can set limit to the tolerance of a broad range of environmental stressors. The degree of stress-induced disturbance of energy balance delineates transition from moderate stress compatible with population persistence (pejus range) to extreme stress where only time-limited existence is possible (pessimum range). It also determines the predominant adaptive strategy of metabolic responses (energy compensation vs. conservation) that allows an organism to survive the disturbance. We propose that energy-related biomarkers can be used to determine the conditions when these metabolic transitions occur and thus predict ecological consequences of stress exposures. Bioenergetic considerations can also provide common denominator for integrating stress responses and predicting tolerance limits under the environmentally realistic scenarios when multiple and often variable stressors act simultaneously on an organism. Determination of bioenergetic sustainability at the organism''s level (or lack thereof) has practical implications. It can help identify the habitats and/or conditions where a population can survive (even if at the cost of reduced reproduction and growth) and those that are incapable of supporting viable populations. Such an approach will assist in explaining and predicting the species'' distribution limits in the face of the environmental change and informing the conservation efforts and resource management practices. [Copyright &y& Elsevier]

Abstract: Lactobacillus plantarum is a facultative heterofermentative lactic acid bacterium widely used in the production of most fermented food due to its ability to thrive in several environmental niches, including the human gut. In order to cope with different growth conditions, it has developed complex molecular response mechanisms, characterized by the induction of a large set of proteins mainly regulated by HrcA and CtsR repressors as well as by global regulators such as carbon catabolite control protein A (CcpA). In this study, the role of CcpA in the regulation of growth under anaerobiosis and aerobiosis, and the adaptation to aeration in L. plantarum WCFS1 were comprehensively investigated by differential proteomics. The inactivation of ccpA, in both growth conditions, significantly changed the expression level of 76 proteins, mainly associated with carbohydrate and energy metabolism, membrane transport, nucleotide metabolism, protein biosynthesis and folding. The role of CcpA as pleiotropic regulator was particularly evident at the shift from homolactic fermentation to mixed fermentation. Proteomic results also indicated that the mutant strain was more responsive to aerobic growth condition. [Copyright &y& Elsevier]