13 results on '"John Wei"'
Search Results
2. Patient reported outcomes for quality of life (QOL) by Expanded Prostate Cancer Index (EPIC) on average 15 years post treatment
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Zachary A. Seymour, Stephanie Daignault-Newton, P.W. McLaughlin, Howard Sandler, William Jackson, Skyler B. Johnson, David Miller, John Wei, Martin Sanda, and Daniel A. Hamstra
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Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Objective/purpose: Previously patient reported quality of life (QOL) was reported in men with prostate cancer a mean 2 and 6 years post treatment with open radical prostatectomy (RP), 3D conformal radiation therapy (3D CRT), or 125I low dose rate (LDR) brachytherapy (BT). Herein we update the results 15 years post-treatment QOL. Materials/methods: The Expanded Prostate Cancer Index (EPIC) domains were scored with differences evaluated at a median 15.8 years follow up based upon mean EPIC summary domains by ANOVA with pairwise post-hoc comparisons adjusted for age. Patient differences of current survey from first cross-section are reported as median change in summary score for each treatment group at median of 2.2 and 6.0, and 15.8 years. Results: Among men still alive response rate was 52% in BT, 60% in 3D CRT, and 62% in RP resulting in 30, 41, and 330 QOL questionnaires to evaluate for each corresponding modality at median follow up of 15.8 years. Men were a mean 75.3, 83.6, and 79.3 years of age after RP, 3DCRT, and BT, respectively.At a median of 15.8 years, there were largely persistent differences in EPIC domains without substantial evolution in QoL from middle time points. Persistent worsening in urinary irritative and bowel domain with 3DRT or BT compared to RP. Trend towards worse urinary incontinence with RP were noted without statistical differences within radiotherapy options. Conclusion: As the EPIC patient reported outcomes with the longest follow-up, these data uniquely reveal temporal trends from 2 to 15 years post treatment. However, the treatment modalities of open RP, 3D CRT without image guidance or intensity modulation, and BT without peripheral loading or MRI guidance may not reflect modern techniques.
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- 2022
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3. Genome-wide copy number variant data for inflammatory bowel disease in a caucasian population
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Svetlana Frenkel, Charles N. Bernstein, Yong Won Jin, Michael Sargent, Qin Kuang, Wenxin Jiang, John Wei, Bhooma Thiruvahindrapuram, Stephen W. Scherer, and Pingzhao Hu
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Science (General) ,Q1-390 - Abstract
Genome-wide copy-number association studies offer new opportunities to identify the mechanisms underlying complex diseases, including chronic inflammatory, psychiatric disorders and others. We have used genotyping microarrays to analyse the copy-number variants (CNVs) from 243 Caucasian individuals with Inflammatory Bowel Disease (IBD). The CNV data was obtained by using multiple quality control measures and merging the results of three different CNV detection algorithms: PennCNV, iPattern, and QuantiSNP. The final dataset contains 4,402 CNVs detected by two or three algorithms independently with high confidence. This paper provides a detailed description of the data generation and quality control steps. For further interpretation of the data presented in this article, please see the research article entitled ‘Copy number variation-based gene set analysis reveals cytokine signalling pathways associated with psychiatric comorbidity in patients with inflammatory bowel disease’.
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- 2019
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4. A Novel RNA In Situ Hybridization Assay for the Long Noncoding RNA SChLAP1 Predicts Poor Clinical Outcome After Radical Prostatectomy in Clinically Localized Prostate Cancer
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Rohit Mehra, Yang Shi, Aaron M. Udager, John R. Prensner, Anirban Sahu, Matthew K. Iyer, Javed Siddiqui, Xuhong Cao, John Wei, Hui Jiang, Felix Y. Feng, and Arul M. Chinnaiyan
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Long noncoding RNAs (lncRNAs) are an emerging class of oncogenic molecules implicated in a diverse range of human malignancies. We recently identified SChLAP1 as a novel lncRNA that demonstrates outlier expression in a subset of prostate cancers, promotes tumor cell invasion and metastasis, and associates with lethal disease. Based on these findings, we sought to develop an RNA in situ hybridization (ISH) assay for SChLAP1 to 1) investigate the spectrum of SChLAP1 expression from benign prostatic tissue to metastatic castration-resistant prostate cancer and 2) to determine whether SChLAP1 expression by ISH is associated with outcome after radical prostatectomy in patients with clinically localized disease. The results from our current study demonstrate that SChLAP1 expression increases with prostate cancer progression, and high SChLAP1 expression by ISH is associated with poor outcome after radical prostatectomy in patients with clinically localized prostate cancer by both univariate (hazard ratio = 2.343, P = .005) and multivariate (hazard ratio = 1.99, P = .032) Cox regression analyses. This study highlights a potential clinical utility for SChLAP1 ISH as a novel tissue-based biomarker assay for outcome prognostication after radical prostatectomy.
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- 2014
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5. Epidemiology of norovirus disease in the first 2 years of life: A prospective multisite cohort study in Lima, Peru
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Claudio F. Lanata, Giselle Soto, Ana I. Gil, Joan Neyra, Rubelio Cornejo, Candice Romero, Lucie Ecker, Maria L. Huaylinos, Sayda La Rosa, Ana Goios, Astrid Borkowski, and John Weil
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Norovirus ,Epidemiology ,Coinfection ,Children ,Peru ,Infectious and parasitic diseases ,RC109-216 - Abstract
Objectives: Norovirus is associated with 18% of acute gastroenteritis (AGE) cases worldwide. We aim to document the norovirus-related AGE incidence in peri-urban areas of Lima (Peru), evaluating the potential impact of a norovirus vaccine introduction. Methods: A prospective, community-based pediatric cohort study was established at two sites in Lima. Healthy children between 5 and 18 months were contacted weekly for AGE detection during a 6-month period. Stool samples from AGE cases were tested for norovirus by RT-PCR. Incidence and coinfection of norovirus-associated AGE were analyzed. All norovirus-positive samples were genotyped by Sanger DNA sequencing. Results: Among 498 enrolled children, 461 (93%) completed the follow-up period. We detected 799 AGE cases, yielding 676 valid stool samples. Norovirus was detected in 216 samples (32%), with an incidence of 7.7 episodes per 100 child-months (95% CI: 6.7-8.8). Genotypes GII.4 (31%) and GII.6 (22%) were frequent. Campylobacter (43%) and Salmonella spp. (15%) were the most common coinfections with norovirus. Ninety-five percent of study children had received an oral rotavirus vaccine. Conclusion: Norovirus was the second most frequent cause of AGE in this Peruvian cohort with high rotavirus vaccine coverage. An effective norovirus vaccine would have an important public health benefit in this population.
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- 2025
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6. Leveraging digital medication adherence technologies to enhance sustainability of European health systems: ENABLE’s key recommendations
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Job F.M. van Boven, Alexandra L. Dima, Björn Wettermark, Ines Potočnjak, Tamás Ágh, Emma Aarnio, Maria Achterbosch, Nilay Aksoy, Martina Bago, Pilar Barnestein-Fonseca, Noemi Bitterman, Michel Burnier, Edel Burton, Theodosia Charitou, Maria Cordina, Tinne Dilles, Klemen Dovc, Marie Ekenberg, Monique Elseviers, Válter R. Fonseca, Sabina de Geest, Cristina M. Ghiciuc, Catherine Goetzinger, Hanna Gottlieb, Anne-Gerd Granas, João Gregório, Gaye Hafez, Kjeld Hansen, Frederik Haupenthal, Rob Heerdink, Maria Teresa Herdeiro, Mickaël Hiligsmann, Dalma Hosszú, Cristina Jacome, Fatjona Kamberi, Maria Kamusheva, Anthony Karageorgos, Przemyslaw Kardas, Nataliia Khanyk, Sandrine Lavalle, Francisca Leiva Fernández, Carlotta Lunghi, Enrica Menditto, Jovan Mihajlovic, Iva Mucalo, Sara Mucherino, Urska Nabergoj Makovec, Anna Oleárová, Maja Ortner Hadžiabdić, Christos Petrou, Ana Tomas Petrovic, Guenka Petrova, Hilary Pinnock, Elisabetta Poluzzi, Miriam Qvarnström, Pamela Rackow, Janette Ribaut, Fatima Roque, Laura J. Sahm, Marie Paule Schneider, Katarina Smilkov, Dins Smits, Ivana Tadic, Indrė Trečiokienė, Ioanna Tsiligianni, Katia Vermeire, Marcia Vervloet, Jiří Vlček, Shlomo Vinker, Daisy Volmer, Bernard Vrijens, and John Weinman
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Public aspects of medicine ,RA1-1270 - Published
- 2025
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7. Genome-wide copy number variant data for inflammatory bowel disease in a caucasian population
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John Wei, Svetlana Frenkel, Wenxin Jiang, Pingzhao Hu, Stephen W. Scherer, Yong Won Jin, Charles N. Bernstein, Michael Sargent, Bhooma Thiruvahindrapuram, and Qin Kuang
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0303 health sciences ,Multidisciplinary ,business.industry ,Computational biology ,medicine.disease ,lcsh:Computer applications to medicine. Medical informatics ,Genome ,Inflammatory bowel disease ,03 medical and health sciences ,0302 clinical medicine ,Biochemistry, Genetics and Molecular Biology ,Medicine ,lcsh:R858-859.7 ,In patient ,Copy-number variation ,DNA microarray ,business ,Caucasian population ,lcsh:Science (General) ,Genotyping ,030217 neurology & neurosurgery ,030304 developmental biology ,Genetic association ,lcsh:Q1-390 - Abstract
Genome-wide copy-number association studies offer new opportunities to identify the mechanisms underlying complex diseases, including chronic inflammatory, psychiatric disorders and others. We have used genotyping microarrays to analyse the copy-number variants (CNVs) from 243 Caucasian individuals with Inflammatory Bowel Disease (IBD). The CNV data was obtained by using multiple quality control measures and merging the results of three different CNV detection algorithms: PennCNV, iPattern, and QuantiSNP. The final dataset contains 4,402 CNVs detected by two or three algorithms independently with high confidence. This paper provides a detailed description of the data generation and quality control steps. For further interpretation of the data presented in this article, please see the research article entitled 'Copy number variation-based gene set analysis reveals cytokine signalling pathways associated with psychiatric comorbidity in patients with inflammatory bowel disease'.
- Published
- 2019
8. Illustrated State‐of‐the‐Art Capsules of the ISTH 2020 Congress
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Robert Ariens, Cecilia Becattini, Markus Bender, Wolfgang Bergmeier, Elisabetta Castoldi, Katrien Devreese, Martin Ellis, David Gailani, Vera Ignjatovic, Paula D. James, Steven Kerrigan, Michele Lambert, Lai Heng Lee, Marcel Levi, Norma Maugeri, Joost Meijers, Juan Melero‐Martin, Alan D. Michelson, Federico Mingozzi, Keith Neeves, Heyu Ni, Anna‐Karin Olsson, Zoltán Prohászka, Marie Ranson, Nicoletta Riva, Yotis Senis, Cornelia H. vanOmmen, Douglas E. Vaughan, and John Weisel
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Abstract The 2020 Congress of the International Society of Thrombosis and Haemostasis (ISTH) was held virtually July 12‐15, 2019, due to the coronavirus disease 2019 pandemic. The congress convenes annually to discuss clinical and basic topics in hemostasis and thrombosis. Each year, the program includes State of Art (SOA) lectures given by prominent scientists. Presenters are asked to create Illustrated Capsules of their talks, which are concise illustrations with minimal explanatory text. Capsules cover major themes of the presentation, and these undergo formal peer review for inclusion in this article. Owing to the shift to a virtual congress this year, organizers reduced the program size. There were 39 SOA lectures virtually presented, and 29 capsules (9 from talks omitted from the virtual congress) were both submitted and successful in peer review, and are included in this article. Topics include the roles of the hemostatic system in inflammation, infection, immunity, and cancer, platelet function and signaling, platelet function disorders, megakaryocyte biology, hemophilia including gene therapy, phenotype tests in hemostasis, von Willebrand factor, anticoagulant factor V, computational driven discovery, endothelium, clinical and basic aspects of thrombotic microangiopathies, fibrinolysis and thrombolysis, antithrombotics in pediatrics, direct oral anticoagulant management, and thrombosis and hemostasis in pregnancy. Capsule authors invite virtual congress attendees to refer to these capsules during the live presentations and participate on Twitter in discussion. Research and Practice in Haemostasis and Thrombosis will release 2 tweets from @RPTHJournal during each presentation, using #IllustratedReview, #CoagCapsule and #ISTH2020. Readers are also welcome to utilize capsules for teaching and ongoing education.
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- 2020
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9. Purification of lipase derived from Burkholderia pseudomallei with alcohol/salt-based aqueous two-phase systems
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Ooi, Chien Wei, Tey, Beng Ti, Hii, Siew Ling, Mustapa Kamal, Siti Mazlina, Chi, John Wei Lan, Ariff, Arbakariya, Tau, Chuan Ling, Ooi, Chien Wei, Tey, Beng Ti, Hii, Siew Ling, Mustapa Kamal, Siti Mazlina, Chi, John Wei Lan, Ariff, Arbakariya, and Tau, Chuan Ling
- Abstract
Alcohol/salt-based aqueous two-phase systems (ATPSs) were used to recover lipase derived from Burkholderia pseudomallei (B. pseudomallei). Nine biphasic systems, comprised of an alcohol-based top phase (ethanol, 2-propanol and 1-propanol) and a salt-based bottom phase (ammonium sulfate, potassium phosphate and sodium citrate), were evaluated for their effectiveness in lipase recovery. The stability of lipase in each of the solutions was tested, and phase diagrams were constructed for each system. The optimum partition efficiency for the purification of lipase was obtained in an ATPS of 16% (w/w) 2-propanol and 16% (w/w) phosphate in the presence of 4.5% (w/v) NaCl. The purified lipase had a purification factor of 13.5 and a yield of 99%.
- Published
- 2009
10. The effect of evidence and theory-based health advice accompanying smartphone air quality alerts on adherence to preventative recommendations during poor air quality days: A randomised controlled trial
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Donatella D'Antoni, Vivian Auyeung, Heather Walton, Gary W. Fuller, Andrew Grieve, and John Weinman
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Environmental sciences ,GE1-350 - Abstract
Although poor air quality can have a negative impact on human health, studies have shown suboptimal levels of adherence to health advice associated with air quality alerts. The present study compared the behavioural impact of the UK Air Quality Index (DAQI) with an alternative message format, using a 2 (general population vs. at-risk individuals) X 2 (usual DAQI messages vs. behaviourally enhanced messages) factorial design. Messages were sent via a smartphone application. Eighty-two participants were randomly allocated to the experimental groups. It was found that the enhanced messages (targeting messages specificity and psychosocial predictors of behaviour change) increased intentions to make permanent behavioural changes to reduce exposure, compared to the control group (V = 0.23). This effect was mediated by a reduced perception of not having enough time to follow the health advice received (b = −0.769, BCa CI [−2.588, 0.533]). It was also found that higher worry about air pollution, perceived severity, perceived efficacy of the recommended behaviour and self-efficacy were predictive of self-reported behaviour change at four weeks. In response to a real moderate air quality alert, among those with a pre-existing lung condition, more respondents in the intervention group reported to have used their preventer inhaler compared to the control group (V = 0.49).On the other hand, the two message formats performed similarly when intentions were collected in relation to a hypothetical high air pollution scenario, with all groups showing relatively high intentions to change behaviours. This study expands the currently limited understanding of how to improve the behavioural impact of existing air quality alerts.
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- 2019
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11. Hepatitis A virus immunity and vaccination among at-risk persons receiving HIV medical care
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Nicholas P. DeGroote, Christine L. Mattson, Yunfeng Tie, John T. Brooks, Shikha Garg, and John Weiser
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Medicine - Abstract
United States guidelines recommend hepatitis A virus (HAV) vaccination for persons living with HIV (PLWH) who are at increased risk for HAV infection, including men who have sex with men (MSM) and persons who inject drugs (PWID). However, nationally representative estimates of vaccine coverage and immunity for this population are lacking. We used medical record and interview data from the 2009–2012 cycles of the Medical Monitoring Project, a nationally representative surveillance system of PLWH receiving HIV medical care in the United States, to estimate the prevalence of HAV immunity, defined as receipt of at least one dose of vaccine or laboratory documentation of anti-HAV antibodies, among 8695 MSM and PWID. Among HAV-nonimmune PLWH, we then examined factors associated with HAV vaccination during the 12-month retrospective observation period using Rao-Scott chi-square tests.Among MSM and PWID receiving HIV medical care, 64% had evidence of HAV immunity. Among those who were nonimmune, 10% were vaccinated during the 12-month retrospective observation period. Factors associated with vaccination during follow-up included younger age (i.e., 18–29 years), self-reported black non-Hispanic race/ethnicity, having detectable HIV RNA, and having been diagnosed with HIV within the past 5 years. Over one third of MSM and PWID receiving HIV medical care during 2009–2012 cycles were not immune to HAV. This analysis suggests that a sizeable proportion of at risk MSM and PWID receiving HIV medical care do not receive HAV vaccination, which is currently recommended. Keywords: Human immunodeficiency virus, Hepatitis A, Vaccination, Men who have sex with men, Persons who inject drugs
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- 2018
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12. Evaluación de las creencias sobre el tratamiento: validez y fiabilidad de la versión española del Beliefs about Medicines Questionnaire
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Marina Beléndez-Vázquez, Antonio Hernández-Mijares, Robert Horne, and John Weinman
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Psychology ,BF1-990 - Abstract
El Beliefs about Medicines Questionnaire (BMQ) se diseñó para evaluar las creencias sobre la medicación y consta de dos secciones, BMQ-General y BMQEspecífico. El objetivo de este estudio instrumental fue evaluar la estructura factorial y fiabilidad de la versión española del BMQ. En el estudio del BMQ-Específico participaron 156 pacientes, 97 diabéticos tratados con insulina y 59 pacientes con medicación antihipertensiva. Las propiedades del BMQ-General se analizaron con las muestras de pacientes crónicos y en un grupo de 256 jóvenes universitarios. Se obtuvo un patrón bifactorial para ambas escalas de la versión española del BMQ, al igual que la versión original. Se comprobó su validez para discriminar entre pacientes con distintas modalidades de tratamiento. Los pacientes tratados con insulina obtuvieron puntuaciones significativamente mayores en la escala Necesidad en comparación con los sujetos hipertensos. La consistencia interna de las escalas del BMQ resultó adecuada en las tres muestras de participantes. La versión española del BMQ es un instrumento válido y fiable para evaluar las creencias sobre la medicación, aunque es preciso realizar otros estudios con diferentes grupos de pacientes y tipos de tratamiento, así como estudiar las relaciones entre el BMQ y la adherencia al tratamiento.
- Published
- 2007
13. Contribution of HIV-1 genomes that do not integrate to the basic reproductive ratio of the virus.
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Lau JW, Levy DN, and Wodarz D
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- DNA Replication, HIV Infections transmission, HIV Infections virology, Humans, Immunological Synapses, Models, Biological, Virus Integration genetics, Virus Replication, Basic Reproduction Number, DNA, Viral genetics, Genome, Viral, HIV-1 genetics
- Abstract
Recent experimental data indicate that HIV-1 DNA that fails to integrate (from now on called uDNA) can by itself successfully produce infectious offspring virions in resting T cells that become activated after infection. This scenario is likely important at the initial stages of the infection. We use mathematical models to calculate the relative contribution of unintegrated and integrated viral DNA to the basic reproductive ratio of the virus, R0, and the models are parameterized with preliminary data. This is done in the context of both free virus spread and transmission of the virus through virological synapses. For free virus transmission, we find that under preliminary parameter estimates, uDNA might contribute about 20% to the total R0. This requires that a single copy of uDNA can successfully replicate. If the presence of more than one uDNA copy is required for replication, uDNA does not contribute to R0. For synaptic transmission, uDNA can contribute to R0 regardless of the number of uDNA copies required for replication. The larger the number of viruses that are successfully transmitted per synapse, however, the lower the contribution of uDNA to R0 because this increases the chances that at least one virus integrates. Using available parameter values, uDNA can maximally contribute 20% to R0 in this case. We argue that the contribution of uDNA to virus reproduction might also be important for continued low level replication of HIV-1 in the presence of integrase inhibitor therapy. Assuming a 20% contribution of uDNA to the overall R0, our calculations suggest that R0=1.6 in the absence of virus integration. While these are rough estimates based on preliminary data that are currently available, this analysis provides a framework for future experimental work which should directly measure key parameters., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2015
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