29 results on '"L Kim"'
Search Results
2. Structure-Based Design of Novel Conformationally Restricted HIV Protease Inhibitors
- Author
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J. P. Griffith, J. T. Court, C. T. Baker, R. D. Tung, F. G. Salituro, D. D. Deininger, S. Pazhanisamy, B. G. Rao, J. L. Kim, W. C. Schairer, E. E. Kim, and B. Li
- Subjects
Chemistry ,Structure based ,HIV Protease Inhibitor ,Virology - Published
- 1999
- Full Text
- View/download PDF
3. Structure-Guided Design of Aminopyrimidine Amides as Potent, Selective Inhibitors of Lymphocyte Specific Kinase: Synthesis, Structure–Activity Relationships, and Inhibition of in Vivo T Cell Activation.
- Author
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Erin F. DiMauro, John Newcomb, Joseph J. Nunes, Jean E. Bemis, Christina Boucher, Lilly Chai, Stuart C. Chaffee, Holly L. Deak, Linda F. Epstein, Ted Faust, Paul Gallant, Anu Gore, Yan Gu, Brad Henkle, Faye Hsieh, Xin Huang, Joseph L. Kim, Josie H. Lee, Matthew W. Martin, and David C. McGowan
- Published
- 2008
- Full Text
- View/download PDF
4. Structure-Based Design of Novel 2-Amino-6-phenyl-pyrimido[5′,4′:5,6]pyrimido[1,2-a]benzimidazol-5(6H)-ones as Potent and Orally Active Inhibitors of Lymphocyte Specific Kinase (Lck): Synthesis, SAR, and In Vivo Anti-Inflammatory Activity.
- Author
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Matthew W. Martin, John Newcomb, Joseph J. Nunes, Christina Boucher, Lilly Chai, Linda F. Epstein, Theodore Faust, Sylvia Flores, Paul Gallant, Anu Gore, Yan Gu, Faye Hsieh, Xin Huang, Joseph L. Kim, Scot Middleton, Kurt Morgenstern, Antonio Oliveira-dos-Santos, Vinod F. Patel, David Powers, and Paul Rose
- Published
- 2008
- Full Text
- View/download PDF
5. Design, Synthesis, and Evaluation of Orally Active Benzimidazoles and Benzoxazoles as Vascular Endothelial Growth Factor-2 Receptor Tyrosine Kinase Inhibitors.
- Author
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Michele H. Potashman, James Bready, Angela Coxon, Thomas M. DeMelfi Jr., Lucian DiPietro, Nicholas Doerr, Daniel Elbaum, Juan Estrada, Paul Gallant, Julie Germain, Yan Gu, Jean-Christophe Harmange, Stephen A. Kaufman, Rick Kendall, Joseph L. Kim, Gondi N. Kumar, Alexander M. Long, Seshadri Neervannan, Vinod F. Patel, and Anthony Polverino
- Published
- 2007
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6. Alkynylpyrimidine Amide Derivatives as Potent, Selective, and Orally Active Inhibitors of Tie-2 Kinase.
- Author
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Victor J. Cee, Brian K. Albrecht, Stephanie Geuns-Meyer, Paul Hughes, Steve Bellon, James Bready, Sean Caenepeel, Stuart C. Chaffee, Angela Coxon, Maurice Emery, Jenne Fretland, Paul Gallant, Yan Gu, Brian L. Hodous, Doug Hoffman, Rebecca E. Johnson, Richard Kendall, Joseph L. Kim, Alexander M. Long, and David McGowan
- Published
- 2007
- Full Text
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7. Evolution of a Highly Selective and Potent 2-(Pyridin-2-yl)-1,3,5-triazine Tie-2 Kinase Inhibitor.
- Author
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Brian L. Hodous, Stephanie D. Geuns-Meyer, Paul E. Hughes, Brian K. Albrecht, Steve Bellon, James Bready, Sean Caenepeel, Victor J. Cee, Stuart C. Chaffee, Angela Coxon, Maurice Emery, Jenne Fretland, Paul Gallant, Yan Gu, Doug Hoffman, Rebecca E. Johnson, Richard Kendall, Joseph L. Kim, Alexander M. Long, and Michael Morrison
- Published
- 2007
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- View/download PDF
8. Rational Drug Design
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Abby Parrill, M. Rami Reddy, Abby L. Parrill, J. D. Hirst, B. Dominy, Z. Guo, M. Vieth, C. L. Brooks, Lu Wang, Mats A. L. Eriksson, Jed Pitera, Peter A. Kollman, Jian Shen, Robert S. DeWitte, Eugene I. Shakhnovich, Donovan Chin, David N. Haney, Katya Delak, Hon M. Chun, Carlos E. Padilla, Mark D. Erion, Gregory D. Hawkins, Jiabo Li, Tianhai (Tony) Zhu, Candee C. Chambers, David J. Giesen, Daniel A. Liotard, Christopher J. Cramer, Donald G. Truhlar, Sherin S. Abdel-Meguid, Baoguang Zhao, Ward W. Smith, Cheryl A. Hanson, Judith LaLonde, Thomas Carr, Karla D'Alessio, Michael S. McQueney, H.-J. Oh, Scott K. Thompson, Daniel F. Veber, Dennis S. Yamashita, K. Raghavan, Scott D. Kahn, John K. Buolamwini, Joong-Youn Shim, Elizabeth R. Collantes, William J. Welsh, Allyn C. Howlett, B. G. Rao, C. T. Baker, J. T. Court, D. D. Deininger, J. P. Griffith, E. E. Kim, J. L. Kim, B. Li, S. Pazhanisamy, F. G. Salituro, W. C. Schairer, R. D. Tung, A. Tropsha, S. J. Cho, W. Zheng, Trevor W. Heritage, David R. Lowis, Arup K. Ghose, Veharkad N. Viswanadhan, John J. Wendolo, Abby Parrill, M. Rami Reddy, Abby L. Parrill, J. D. Hirst, B. Dominy, Z. Guo, M. Vieth, C. L. Brooks, Lu Wang, Mats A. L. Eriksson, Jed Pitera, Peter A. Kollman, Jian Shen, Robert S. DeWitte, Eugene I. Shakhnovich, Donovan Chin, David N. Haney, Katya Delak, Hon M. Chun, Carlos E. Padilla, Mark D. Erion, Gregory D. Hawkins, Jiabo Li, Tianhai (Tony) Zhu, Candee C. Chambers, David J. Giesen, Daniel A. Liotard, Christopher J. Cramer, Donald G. Truhlar, Sherin S. Abdel-Meguid, Baoguang Zhao, Ward W. Smith, Cheryl A. Hanson, Judith LaLonde, Thomas Carr, Karla D'Alessio, Michael S. McQueney, H.-J. Oh, Scott K. Thompson, Daniel F. Veber, Dennis S. Yamashita, K. Raghavan, Scott D. Kahn, John K. Buolamwini, Joong-Youn Shim, Elizabeth R. Collantes, William J. Welsh, Allyn C. Howlett, B. G. Rao, C. T. Baker, J. T. Court, D. D. Deininger, J. P. Griffith, E. E. Kim, J. L. Kim, B. Li, S. Pazhanisamy, F. G. Salituro, W. C. Schairer, R. D. Tung, A. Tropsha, S. J. Cho, W. Zheng, Trevor W. Heritage, David R. Lowis, Arup K. Ghose, Veharkad N. Viswanadhan, and John J. Wendolo
- Published
- 1999
9. Creep Behavior of Amine-Cured Epoxy Networks: Effect of Stoichiometry
- Author
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J. A. Manson, S. L. Kim, and S. C. Misra
- Subjects
Materials science ,Creep ,visual_art ,visual_art.visual_art_medium ,Amine gas treating ,Epoxy ,Composite material ,Stoichiometry - Published
- 1979
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10. Fatigue Crack Propagation in Polycarbonate
- Author
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S. L. Kim, R. W. Hertzberg, J. A. Manson, and W. C. Wu
- Subjects
Crack closure ,Materials science ,visual_art ,visual_art.visual_art_medium ,Polycarbonate ,Composite material ,Fatigue crack propagation - Published
- 1976
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11. Design, Synthesis, and Evaluation of Orally Active Benzimidazoles and Benzoxazoles as Vascular Endothelial Growth Factor-2 Receptor Tyrosine Kinase Inhibitors.
- Author
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Michele H. Potashman, James Bready, Angela Coxon, Thomas M. DeMelfi Jr., Lucian DiPietro, Nicholas Doerr, Daniel Elbaum, Juan Estrada, Paul Gallant, Julie Germain, Yan Gu, Jean-Christophe Harmange, Stephen A. Kaufman, Rick Kendall, Joseph L. Kim, Gondi N. Kumar, Alexander M. Long, Seshadri Neervannan, Vinod F. Patel, and Anthony Polverino
- Published
- 2008
- Full Text
- View/download PDF
12. Epoxy Resin Chemistry
- Author
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RONALD S. BAUER, J. V. CRIVELLO, J. H. W. LAM, WILLIAM R. WATT, JAMES D. B. SMITH, W. RAUDENBUSCH, EDWARD G. BOZZI, CAMILLA Y. ZENDIG, TERRY L. ANDERSON, JAMES H. MELLOAN, KATHLEEN L. POWELL, ROLAND R. McCLAIN, J. BRANDON SIMONS, ROBIN L. CONWAY, DAVID A. SHIMP, W. B. MONIZ, C. F. PORANSKI, H. C. J. VENSELAAR, D. M. PAUL, ROBERT A. GARDINER, ANTHONY P. MANZARA, E. H. CATSIFF, R. E. COULEHAN, J. F. DIPRIMA, D. A. GORDON, R. SELTZER, S. C. MISRA, J. A. MANSON, L. H. SPERLING, S. L. KIM, YOSHIO TANAKA, D. A. CORNFORTH, B. G. COWBURN, K. M. SMITH, C. W. STEPHENS, C. G. TILLEY, JOHN J. KING, JAMES P. BELL, JAMES R. GRIFFITH, RONALD S. BAUER, J. V. CRIVELLO, J. H. W. LAM, WILLIAM R. WATT, JAMES D. B. SMITH, W. RAUDENBUSCH, EDWARD G. BOZZI, CAMILLA Y. ZENDIG, TERRY L. ANDERSON, JAMES H. MELLOAN, KATHLEEN L. POWELL, ROLAND R. McCLAIN, J. BRANDON SIMONS, ROBIN L. CONWAY, DAVID A. SHIMP, W. B. MONIZ, C. F. PORANSKI, H. C. J. VENSELAAR, D. M. PAUL, ROBERT A. GARDINER, ANTHONY P. MANZARA, E. H. CATSIFF, R. E. COULEHAN, J. F. DIPRIMA, D. A. GORDON, R. SELTZER, S. C. MISRA, J. A. MANSON, L. H. SPERLING, S. L. KIM, YOSHIO TANAKA, D. A. CORNFORTH, B. G. COWBURN, K. M. SMITH, C. W. STEPHENS, C. G. TILLEY, JOHN J. KING, JAMES P. BELL, and JAMES R. GRIFFITH
- Subjects
- Epoxy resins--Congresses
- Published
- 1979
13. Toughness and Brittleness of Plastics
- Author
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RUDOLPH D. DEANIN, ALDO M. CRUGNOLA, S. MATSUOKA, ROGER J. MORGAN, JAMES E. O'NEAL, J. H. MAGILL, M. KOJIMA, S. S. POLLACK, M. N. HALLER, S. S. STERNSTEIN, J. ROSENTHAL, M. J. DOYLE, J. G. WAGNER, A. CERS, C. Y. YUAN HSIAO, C. C. HSIAO, RICHARD E. ROBERTSON, A. F. YEE, W. V. OLSZEWSKI, S. MILLER, CHARLES L. BEATTY, WALTER J. STAUFFER, SHAUL M. AHARONI, E. SACHER, R. G. BAYER, P. A. ENGEL, J. A. MANSON, R. W. HERTZBERG, S. L. KIM, W. C. WU, L. H. SPERLING, C. B. BUCKNALL, C. J. PAGE, V. O. YOUNG, MARGARET E. ROYLANCE, DAVID K. ROYLANCE, JACQUES N. SULTAN, R. E. TOUHSAENT, D. A. THOMAS, R. J. ANGELO, R. M. IKEDA, M. L. WALLACH, R. R. DURST, R. M. GRIFFITH, A. J. URBANIC, W. J VAN ESSEN, P. J. FENELON, J. R. WILSON, KALIDAS R. PATEL, BERNARD BAUM, WILLIAM H. HOLLEY, HAROLD STISKIN, ROY A. WHITE, PAUL B. WILLIS, ANTHONY F. WILDE, R. G. BAUER, P. S. PILLAI, F. F. KOBLITZ, S. D. STEEN, P. R. KULP, R. C. GILL, J. F. GLENN, A. NOSHAY, M. MATZNER, B. P. BARTH, R. K. WALTON, R. P. KAMBOUR, D. FAULKNER, E. E. KAMPF, G. E. NIZNIK, A. R. SHULTZ, C. K. RIEW, E. H. ROWE, RUDOLPH D. DEANIN, ALDO M. CRUGNOLA, S. MATSUOKA, ROGER J. MORGAN, JAMES E. O'NEAL, J. H. MAGILL, M. KOJIMA, S. S. POLLACK, M. N. HALLER, S. S. STERNSTEIN, J. ROSENTHAL, M. J. DOYLE, J. G. WAGNER, A. CERS, C. Y. YUAN HSIAO, C. C. HSIAO, RICHARD E. ROBERTSON, A. F. YEE, W. V. OLSZEWSKI, S. MILLER, CHARLES L. BEATTY, WALTER J. STAUFFER, SHAUL M. AHARONI, E. SACHER, R. G. BAYER, P. A. ENGEL, J. A. MANSON, R. W. HERTZBERG, S. L. KIM, W. C. WU, L. H. SPERLING, C. B. BUCKNALL, C. J. PAGE, V. O. YOUNG, MARGARET E. ROYLANCE, DAVID K. ROYLANCE, JACQUES N. SULTAN, R. E. TOUHSAENT, D. A. THOMAS, R. J. ANGELO, R. M. IKEDA, M. L. WALLACH, R. R. DURST, R. M. GRIFFITH, A. J. URBANIC, W. J VAN ESSEN, P. J. FENELON, J. R. WILSON, KALIDAS R. PATEL, BERNARD BAUM, WILLIAM H. HOLLEY, HAROLD STISKIN, ROY A. WHITE, PAUL B. WILLIS, ANTHONY F. WILDE, R. G. BAUER, P. S. PILLAI, F. F. KOBLITZ, S. D. STEEN, P. R. KULP, R. C. GILL, J. F. GLENN, A. NOSHAY, M. MATZNER, B. P. BARTH, R. K. WALTON, R. P. KAMBOUR, D. FAULKNER, E. E. KAMPF, G. E. NIZNIK, A. R. SHULTZ, C. K. RIEW, and E. H. ROWE
- Subjects
- Plastics--Testing--Congresses
- Published
- 1976
14. Completely Multipolar Model for Many-Body Water-Ion and Ion-Ion Interactions.
- Author
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Heindel JP, Kim L, Head-Gordon M, and Head-Gordon T
- Abstract
This work constructs an advanced force field, the Completely Multipolar Model (CMM), to quantitatively reproduce each term of an energy decomposition analysis (EDA) for aqueous solvated alkali metal cations and halide anions and their ion pairings. We find that all individual EDA terms remain well-approximated in the CMM for ion-water and ion-ion interactions, except for polarization, which shows errors due to the partial covalency of ion interactions near their equilibrium. We quantify the onset of the dative bonding regime by examining the change in molecular polarizability and Mayer bond indices as a function of distance, showing that partial covalency manifests by breaking the symmetry of atomic polarizabilities while strongly damping them at short-range. This motivates an environment-dependent atomic polarizability parameter that depends on the strength of the local electric field experienced by the ions to account for strong damping, with anisotropy introduced by atomic multipoles. The resulting CMM model for ions provides accurate dimer surfaces and three-body polarization and charge transfer compared to EDA, and shows excellent performance on various ion benchmarks including vibrational frequencies and cluster geometries.
- Published
- 2025
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- View/download PDF
15. Lewis-Acid Mediated Reactivity in Single-Molecule Junctions.
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Prana J, Kim L, Czyszczon-Burton TM, Homann G, Chen SF, Miao Z, Camarasa-Gómez M, and Inkpen MS
- Abstract
While chemical reactions at a gold electrode can be monitored using molecular conductance and driven by extrinsic stimuli, the intrinsic properties of the nanostructured interface may perform important additional functions that are not yet well understood. Here we evaluate these properties in studies of single-molecule junctions formed from components comprising 4,4'-biphenyl backbones functionalized with 12 different sulfur-based linker groups. With some linkers, we find evidence for in situ S-C(sp
3 ) bond breaking, and C(sp2 )-C(sp3 ) bond forming, reactions consistent with the ex situ transformations expected for those groups in the presence of a Lewis acid. Notably, we also approach the limits of substituent influence on the conductance of physisorbed sulfur-linked junctions. As an illustrative example, we show that a tert- butylthio-functionalized precursor can form both chemisorbed (Au-S) junctions, consistent with heterolytic S-C(sp3 ) bond cleavage and generation of a stable tert- butyl carbocation, as well as physisorbed junctions that are >1 order of magnitude lower conductance than analogous junctions comprising cyclic "locked" thioether contacts. These findings are supported by a systematic analysis of model thioether components comprising different simple hydrocarbon substituents of intermediate size, which do not form chemisorbed contacts and further clarify the inverse relationship between conductance and substituent steric bulk. First-principles calculations confirm that bulky sulfur-substituents increase the probability of forming junction geometries with reduced electronic coupling between the electrode and π-conjugated molecular backbone. Together, this work helps to rationalize the dual roles that linker chemical structure and metal electrode Lewis character can play in mediating interfacial reactions in break-junction experiments.- Published
- 2024
- Full Text
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16. Low Vapor Pressure Solvents for Single-Molecule Junction Measurements.
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Kim L, Czyszczon-Burton TM, Nguyen KM, Stukey S, Lazar S, Prana J, Miao Z, Park S, Chen SF, and Inkpen MS
- Abstract
Nonpolar solvents commonly used in scanning tunneling microscope-based break junction measurements exhibit hazards and relatively low boiling points (bp) that limit the scope of solution experiments at elevated temperatures. Here we show that low toxicity, ultrahigh bp solvents such as bis(2-ethylhexyl) adipate (bp = 417 °C) and squalane (457 °C) can be used to probe molecular junctions at ≥100 °C. With these, we extend solvent- and temperature-dependent conductance trends for junction components such as 4,4'-bipyridine and thiomethyl-terminated oligophenylenes and reveal the gold snapback distance is larger at 100 °C due to increased surface atom mobility. We further show the rate of surface transmetalation and homocoupling reactions using phenylboronic acids increases at 100 °C, while junctions comprising anticipated boroxine condensation products form only at room temperature in an anhydrous glovebox atmosphere. Overall, this work demonstrates the utility of low vapor pressure solvents for the comprehensive characterization of junction properties and chemical reactivity at the single-molecule limit.
- Published
- 2024
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- View/download PDF
17. Nanoscale Infrared Spectroscopic Characterization of Extended Defects in 4H-Silicon Carbide.
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Criswell SG, Mahadik NA, Gallagher JC, Barnett J, Kim L, Ghorbani M, Kamaliya B, Bassim ND, Taubner T, and Caldwell JD
- Abstract
Extended defects in wide-bandgap semiconductors have been widely investigated using techniques providing either spectroscopic or microscopic information. Nano-Fourier transform infrared spectroscopy (nano-FTIR) is a nondestructive characterization method combining FTIR with nanoscale spatial resolution (∼20 nm) and topographic information. Here, we demonstrate the capability of nano-FTIR for the characterization of extended defects in semiconductors by investigating an in-grown stacking fault (IGSF) present in a 4H-SiC epitaxial layer. We observe a local spectral shift of the mid-infrared near-field response, consistent with the identification of the defect stacking order as 3C-SiC (cubic) from comparative simulations based on the finite dipole model (FDM). This 3C-SiC IGSF contrasts with the more typical 8H-SiC IGSFs reported previously and is exemplary in showing that nanoscale spectroscopy with nano-FTIR can provide new insights into the properties of extended defects, the understanding of which is crucial for mitigating deleterious effects of such defects in alternative semiconductor materials and devices.
- Published
- 2024
- Full Text
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18. Second Skin as Self-Protection Against γ-Hydroxybutyrate.
- Author
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Kim GJ, Park SJ, Kim L, Kim KH, Kim S, An JE, Shin CJ, Seo SE, Jo S, Kim J, Ha S, Seo HW, Rho MC, Kwon DH, Kim WK, Jeong G, Ryu JC, Kim JJ, and Kwon OS
- Subjects
- Ethanol, Sodium Oxybate, Rape
- Abstract
γ-Hydroxybutyrate (GHB), a date-rape drug, causes certain symptoms, such as amnesia, confusion, ataxia, and unconsciousness, when dissolved in beverages and consumed by a victim. Commonly, assailants use GHB in secret for the crime of drug-facilitated sexual assault because it is tasteless, odorless, and colorless when dissolved in beverages. Generally, GHB detection methods are difficult to use promptly and secretly in situ and in real life because of the necessary detection equipment and low selectivity. To overcome this problem, we have developed a fast, simple, and easy-to-use second skin platform as a confidential self-protection platform that can detect GHB in situ or in real life without equipment. The second skin platform for naked-eye detection of GHB is fabricated with poly(vinyl alcohol) (PVA), polyurethane (PU), and polyacrylonitrile (PAN) included in the chemical receptor 2-(3-bromo-4-hydroxystyryl)-3-ethylbenzothiazol-3-ium iodide (BHEI). PAN conjugated with BHEI nanofibers (PB NFs) has various characteristics, such as ease of use, high sensitivity, and fast color change. PB NFs rapidly detected GHB at 0.01 mg/mL. Furthermore, the second-skin platform attached to the fingertip and wrist detected both 1 and 0.1 mg/mL GHB in solution within 50 s. The color changes caused by the interaction of GHB and the second skin platform cannot be stopped due to strong chemical reactions. In addition, a second skin platform can be secretly utilized in real life because it can recognize fingerprints and object temperatures. Therefore, the second skin platform can be used to aid daily life and prevent drug-facilitated sexual assault crime when attached to the skin because it can be exposed anytime and anywhere.
- Published
- 2023
- Full Text
- View/download PDF
19. Discrimination of the H1N1 and H5N2 Variants of Influenza A Virus Using an Isomeric Sialic Acid-Conjugated Graphene Field-Effect Transistor.
- Author
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Nazir S, Kim KH, Kim L, Seo SE, Bae PK, An JE, and Kwon OS
- Subjects
- Humans, N-Acetylneuraminic Acid metabolism, Receptors, Virus metabolism, SARS-CoV-2 metabolism, Hemagglutinins metabolism, Hemagglutinin Glycoproteins, Influenza Virus, Influenza A virus metabolism, Influenza A Virus, H1N1 Subtype metabolism, Influenza, Human, Graphite metabolism, Influenza A Virus, H5N2 Subtype metabolism, COVID-19
- Abstract
There has been a continuous effort to fabricate a fast, sensitive, and inexpensive system for influenza virus detection to meet the demand for effective screening in point-of-care testing. Herein, we report a sialic acid (SA)-conjugated graphene field-effect transistor (SA-GFET) sensor designed using α2,3-linked sialic acid (3'-SA) and α2,6-linked sialic acid (6'-SA) for the detection and discrimination of the hemagglutinin (HA) protein of the H5N2 and H1N1 viruses. 3'-SA and 6'-SA specific for H5 and H1 influenza were used in the SA-GFET to capture the HA protein of the influenza virus. The net charge of the captured viral sample led to a change in the electrical current of the SA-GFET platform, which could be correlated to the concentration of the viral sample. This SA-GFET platform exhibited a highly sensitive response in the range of 10
1 -106 pfu mL-1 , with a limit of detection (LOD) of 101 pfu mL-1 in buffer solution and a response time of approximately 10 s. The selectivity of the SA-GFET platform for the H1N1 and H5N2 influenza viruses was verified by testing analogous respiratory viruses, i.e., influenza B and the spike protein of SARS-CoV-2 and MERS-CoV, on the SA-GFET. Overall, the results demonstrate that the developed dual-channel SA-GFET platform can potentially serve as a highly efficient and sensitive sensing platform for the rapid detection of infectious diseases.- Published
- 2023
- Full Text
- View/download PDF
20. Adsorption Studies at the Graphene Oxide-Liquid Interface: A Molecular Dynamics Study.
- Author
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Subasinghege Don V, Kim L, David R, Nauman JA, and Kumar R
- Abstract
The adsorption of organic aromatic molecules, namely aniline, onto graphene oxide is investigated using molecular simulations. The effect of the oxidation level of the graphene oxide sheet as well as the presence of two different halide salts, sodium chloride and sodium iodide, were examined. The aniline molecule in the more-reduced graphene oxide case, in the absence of added salt, showed a slightly greater affinity for the graphene oxide-water interface as compared to the oxidized form. The presence of the iodide ion increased the affinity of the aniline molecule in the reduced case but had the opposite effect for the more-oxidized form. The effect of oxidation and added salt on the interfacial water layer was also examined., Competing Interests: The authors declare no competing financial interest., (© 2023 The Authors. Published by American Chemical Society.)
- Published
- 2023
- Full Text
- View/download PDF
21. Cyclic and Linear Peptides Containing Alternate WW and RR Residues as Molecular Cargo Delivery Tools.
- Author
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Kim L, Lohan S, Moreno J, Zoghebi K, Tiwari RK, and Parang K
- Subjects
- Humans, Chlorpromazine, HEK293 Cells, Nystatin, Cell Line, Tumor, Endocytosis, Peptides, Cyclic chemistry, Cell-Penetrating Peptides
- Abstract
Cell-impermeable and negatively charged compounds' cellular uptake across the cell membranes remains challenging. Herein, the synthesis of four linear [(WWRR)
2 , (WWRR)3 , (WWRR)4 , and (WWRR)5 ] and four cyclic ([WWRR]2 , [WWRR]3 , [WWRR]4 , and [WWRR]5 ) peptides containing alternate two tryptophan (WW) and two arginine (RR) residues and their biological evaluation as molecular transporters are reported. The peptides did not show any significant cytotoxicity in different cell lines (MDA-MB-23, SK-OV-3, and HEK 293) at a concentration of 5 μM and after 3 h of incubation time. The uptake of fluorescence-labeled cargo molecules (F'-GpYEEI, F'-siRNA, and F'-3TC) in the presence of the peptides was monitored in different cell lines (SK-OV-3 and MDA-MB-231) with fluorescence-activated cell sorting. Among all the peptides, [WWRR]5 ( C4 ) showed the highest cellular uptake of cargo molecules, indicating it can act as effective molecular transporter. Confocal microscopy in MDA-MB-231 cells showed the cellular uptake of F'-GpYEEI in the presence of C4 and the intracellular localization of fluorescence-labeled C4 ( F'-C4 ) in the cytosol. The F'-C4 cellular uptake was found to be concentration- and time-dependent, as shown by flow cytometry in MDA-MB-231 cells. Confocal microscopy and flow cytometry of F'-C4 in MDA-MB-231 cells were examined alone and in the presence of different endocytosis inhibitors (chlorpromazine, methyl-β-cyclodextrin, chloroquine, and nystatin). The data showed that the cellular uptake of F'-C4 in the presence of chlorpromazine, chloroquine, and methyl-β-cyclodextrin was reduced but not completely eliminated, indicating that both energy-independent and energy-dependent pathways contributed to the cellular uptake of F'-C4 . Similar results were obtained using the confocal microscopy of C4 and F'-GpYEEI in the presence of endocytosis inhibitors (chlorpromazine, methyl-β-cyclodextrin, chloroquine, and nystatin). These data indicate that C4 has the potential to be used as a cell-penetrating peptide and cargo transporter.- Published
- 2023
- Full Text
- View/download PDF
22. Highly Efficient Real-Time TRPV1 Screening Methodology for Effective Drug Candidates.
- Author
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Lim SG, Seo SE, Jo S, Kim KH, Kim L, and Kwon OS
- Abstract
Transient receptor potential vanilloid 1 (TRPV1) agonists that bind to the vanilloid pocket are being actively studied in the pharmaceutical industry to develop novel treatments for chronic pain and cancer. To discover synthetic vanilloids without the side effect of capsaicin, a time-consuming process of drug candidate selection is essential to a myriad of chemical compounds. Herein, we propose a novel approach to field-effect transistors for the fast and facile screening of lead vanilloid compounds for the development of TRPV1-targeting medications. The graphene field-effect transistor was fabricated with human TRPV1 receptor protein as the bioprobe, and various analyses (SEM, Raman, and FT-IR) were utilized to verify successful manufacture. Simulations of TRPV1 with capsaicin, olvanil, and arvanil were conducted using AutoDock Vina/PyMOL to confirm the binding affinity. The interaction of the ligands with TRPV1 was detected via the fabricated platform, and the collected responses corresponded to the simulation analysis., Competing Interests: The authors declare no competing financial interest., (© 2022 The Authors. Published by American Chemical Society.)
- Published
- 2022
- Full Text
- View/download PDF
23. Synthesis, Characterization, and Hydrogen Evolution Activity of Metallo- meso -(4-fluoro-2,6-dimethylphenyl)porphyrin Derivatives.
- Author
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Chou P, Kim L, Marzouk SM, Sun R, Hartnett AC, Dogutan DK, Zheng SL, and Nocera DG
- Abstract
Zn(II), Cu(II), and Ni(II) 5,10,15,20-tetrakis(4-fluoro-2,6-dimethylphenyl)porphyrins (TFPs) have been synthesized and characterized. The electronic spectroscopy and cyclic voltammetry of these compounds, along with the free-base macrocycle (2H-TFP), have been determined; 2H-TFP was also structurally characterized by X-ray crystallography. The Cu(II)TFP exhibits catalytic activity for the hydrogen evolution reaction (HER). The analysis of linear sweep voltammograms shows that the HER reaction of Cu(II)TFP with benzoic acid is first-order in proton concentration with an average apparent rate constant for HER catalysis of k
app = 5.79 ± 0.47 × 103 M-1 s-1 ., Competing Interests: The authors declare no competing financial interest., (© 2022 The Authors. Published by American Chemical Society.)- Published
- 2022
- Full Text
- View/download PDF
24. Modulation of N -Methyl- N -nitrosourea Mutagenesis in Mouse Embryo Fibroblasts Derived from the gpt Delta Mouse by an Inhibitor of the O 6 -Methylguanine Methyltransferase, MGMT.
- Author
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Thongararm P, Fedeles BI, Khumsubdee S, Armijo AL, Kim L, Thiantanawat A, Promvijit J, Navasumrit P, Ruchirawat M, Croy RG, and Essigmann JM
- Subjects
- Alkylating Agents chemistry, Animals, DNA Modification Methylases metabolism, DNA Repair Enzymes metabolism, Enzyme Inhibitors chemistry, Fibroblasts metabolism, Methylnitrosourea chemistry, Mice, Mice, Inbred C57BL, Mice, Transgenic, Tumor Suppressor Proteins metabolism, Alkylating Agents pharmacology, DNA Modification Methylases antagonists & inhibitors, DNA Repair Enzymes antagonists & inhibitors, Enzyme Inhibitors pharmacology, Fibroblasts drug effects, Methylnitrosourea pharmacology, Mutagenesis drug effects, Tumor Suppressor Proteins antagonists & inhibitors
- Abstract
DNA methylating agents are abundant in the environment and are sometimes used in cancer chemotherapy. They react with DNA to form methyl-DNA adducts and byproduct lesions that can be both toxic and mutagenic. Foremost among the mutagenic lesions is O
6 -methylguanine (m6G), which base pairs with thymine during replication to cause GC → AT mutations. The gpt delta C57BL/6J mouse strain of Nohmi et al. ( Mol. Mutagen 1996 , 28 , 465-70) reliably produces mutational spectra of many DNA damaging agents. In this work, mouse embryo fibroblasts (MEFs) were made from gpt delta C57BL/6J mice and evaluated as a screening tool to determine the qualitative and quantitative features of mutagenesis by N -methyl- N -nitrosourea (MNU), a direct-acting DNA alkylator that serves as a model for environmental N -nitrosamines, such as N -nitrosodimethylamine and therapeutic agents such as Temozolomide. The DNA repair protein MGMT ( O6 -methylguanine DNA methyltransferase) protects against environmental mutagenesis by DNA methylating agents and, by removing m6G, limits the therapeutic potential of Temozolomide in cancer therapy. The gpt delta MEFs were treated with MNU to establish dose-dependent toxicity. In parallel, MNU mutagenicity was determined in the presence and absence of the MGMT inhibitor AA-CW236 (4-(2-(5-(chloromethyl)-4-(4-(trifluoromethoxy)phenyl)-1H-1,2,3-triazol-1-yl)ethyl)-3,5-dimethylisoxazole). With and without the inhibitor, the principal mutagenic event of MNU was GC → AT, but more mutations were observed when the inhibitor was present. Evidence that the mutagenic lesion was m6G was based on mass spectral data collected using O6 -methyl- d3 -guanine as an internal standard; m6G levels were higher in AA-CW236 treated MEFs by an amount proportional to the higher mutation frequency seen in the same cells. This work establishes gpt delta MEFs as a versatile tool for probing mutagenesis by environmental and therapeutic agents and as a cell culture model in which chemical genetics can be used to determine the impact of DNA repair on biological responses to DNA damaging agents.- Published
- 2020
- Full Text
- View/download PDF
25. Electronically Tunable Perfect Absorption in Graphene.
- Author
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Kim S, Jang MS, Brar VW, Mauser KW, Kim L, and Atwater HA
- Abstract
The demand for dynamically tunable light modulation in flat optics applications has grown in recent years. Graphene nanostructures have been extensively studied as means of creating large effective index tunability, motivated by theoretical predictions of the potential for unity absorption in resonantly excited graphene nanostructures. However, the poor radiative coupling to graphene plasmonic nanoresonators and low graphene carrier mobilities from imperfections in processed graphene samples have led to low modulation depths in experimental attempts at creating tunable absorption in graphene devices. Here we demonstrate electronically tunable perfect absorption in graphene, covering less than 10% of the surface area, by incorporating multiscale nanophotonic structures composed of a low-permittivity substrate and subwavelength noble metal plasmonic antennas to enhance the radiative coupling to deep subwavelength graphene nanoresonators. To design the structures, we devised a graphical method based on effective surface admittance, elucidating the origin of perfect absorption arising from critical coupling between radiation and graphene plasmonic modes. Experimental measurements reveal 96.9% absorption in the graphene plasmonic nanostructure at 1389 cm
-1 , with an on/off modulation efficiency of 95.9% in reflection.- Published
- 2018
- Full Text
- View/download PDF
26. Rapid and Simultaneous Analysis of 360 Pesticides in Brown Rice, Spinach, Orange, and Potato Using Microbore GC-MS/MS.
- Author
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Lee J, Kim L, Shin Y, Lee J, Lee J, Kim E, Moon JK, and Kim JH
- Subjects
- Limit of Detection, Citrus sinensis chemistry, Food Contamination analysis, Gas Chromatography-Mass Spectrometry methods, Oryza chemistry, Pesticide Residues chemistry, Solanum tuberosum chemistry, Spinacia oleracea chemistry
- Abstract
A multiresidue method for the simultaneous and rapid analysis of 360 pesticides in representative agricultural produce (brown rice, orange, spinach, and potato) was developed using a modified QuEChERS procedure combined with gas chromatography-tandem mass spectrometry (GC-MS/MS). Selected reaction monitoring transition parameters (e.g., collision energy, precursor and product ions) in MS/MS were optimized to achieve the best selectivity and sensitivity for a wide range of GC-amenable pesticides. A short (20 m) microbore (0.18 mm i.d.) column resulted in better signal-to-noise ratio with reduced analysis time than a conventional narrowbore column (30 m × 0.25 mm i.d.). The priming injection dramatically increased peak areas by masking effect on a new GC liner. The limit of quantitation was <0.01 mg/kg, and the correlation coefficients (r
2 ) of matrix-matched standards were >0.99 within the range of 0.0025-0.1 mg/kg. Acetonitrile with 0.1% formic acid without additional buffer salts was used for pesticide extraction, whereas only primary-secondary amine (PSA) was used for dispersive solid phase extraction (dSPE) cleanup, to achieve good recoveries for most of the target analytes. The recoveries ranged from 70 to 120% with relative standard deviations of ≤20% at 0.01 and 0.05 mg/kg spiking levels (n = 6) in all samples, indicating acceptable accuracy and precision of the method. Seventeen real samples from local markets were analyzed by using the optimized method, and 14 pesticides in 11 incurred samples were found at below the maximum residue limits.- Published
- 2017
- Full Text
- View/download PDF
27. Assessing the severity of rainfall-derived infiltration and inflow and sewer deterioration based on the flux stability of sewage markers.
- Author
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Shelton JM, Kim L, Fang J, Ray C, and Yan T
- Subjects
- Caffeine analysis, Enterococcus isolation & purification, Escherichia coli isolation & purification, Models, Theoretical, Nitrogen analysis, Water Pollutants, Chemical analysis, Environmental Monitoring methods, Rain chemistry, Sewage analysis
- Abstract
This study investigated the flux stability of select chemical and biological sewage markers, including caffeine, total nitrogen (TN), total suspended solids (TSS), E. coli, and enterococci, and their suitability in assessing the severity of rainfall-derived infiltration and inflow (RDII) in a residential sewershed. To quantify and compare marker flux stability, concentrations of the candidate markers in two dry-weather periods were determined and the one-day lag autocorrelation coefficients (r) of their mass fluxes were calculated. TN (r = 0.82-0.88) exhibited higher and more consistent flux stability than TSS (r = 0.49-0.82), caffeine (r = 0.56-0.58), E. coli (r = 0.36-0.87), and enterococci (by culture; r = 0.40-0.52), all of which except enterococci by qPCR (r = -0.10-0.21) showed significant autocorrelation. Sewage flows and marker concentrations were also monitored in two wet-weather periods, and the severity of RDII (R(RDII)) were calculated using either flow measurements or marker concentrations independently. Corresponding to its outstanding flux stability, R(RDII) values estimated by TN predicted all severe RDII instances and gave the highest and most consistent correlation (r = 0.74-0.78) among the different sewage markers. Overall, the study illustrated the feasibility of using the flux stability of sewage markers in assessing the severity of RDII and thereby deterioration levels in sewer systems.
- Published
- 2011
- Full Text
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28. Contact printing of quantum dot light-emitting devices.
- Author
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Kim L, Anikeeva PO, Coe-Sullivan SA, Steckel JS, Bawendi MG, and Bulović V
- Abstract
We demonstrate a solvent-free contact printing process for deposition of patterned and unpatterned colloidal quantum dot (QD) thin films as the electroluminescent layers within hybrid organic-QD light-emitting devices (QD-LEDs). Our method benefits from the simplicity, low cost, and high throughput of solution-processing methods, while eliminating exposure of device structures to solvents. Because the charge transport layers in hybrid organic/inorganic QD-LEDs consist of solvent-sensitive organic thin films, the ability to avoid solvent exposure during device growth, as presented in this study, provides a new flexibility in choosing organic materials for improved device performance. In addition, our method allows us to fabricate both monochrome and red-green-blue patterned electroluminescent structures with 25 microm critical dimension, corresponding to 1000 ppi (pixels-per-inch) print resolution.
- Published
- 2008
- Full Text
- View/download PDF
29. Electron spin resonance of calmodulin-vanadyl complexes.
- Author
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Nieves J, Kim L, Puett D, Echegoyen L, Benabe J, and Martinez-Maldonado M
- Subjects
- Binding Sites, Electron Spin Resonance Spectroscopy, Kinetics, Protein Binding, Protein Conformation, Calmodulin, Vanadates
- Abstract
X-band (9.2 GHz) electron spin resonance spectroscopy was used to investigate the binding of vanadyl to calmodulin. Solution spectra, obtained at ambient temperature with various VO2+:calmodulin molar ratios, suggested a binding stoichioimetry of 4 mol of VO2+/mol of protein and the possibility of two classes of binding sites. The latter was confirmed by using frozen solutions of calmodulin-VO2+ complexes that gave splitting of the spectral bands corresponding to the parallel components, which was particularly pronounced with the three high-field peaks. Competition of Ca2+ for the VO2+ binding sites was investigated, and the results indicated that two of the VO2+ sites corresponded to two of the Ca2+ sites; the other two VO2+ binding sites may have a higher affinity for VO2+ than for Ca2+ or they may correspond to Ca2+-independent sites. These results demonstrate that electron spin resonance spectroscopy can be used advantageously to probe subtle differences in the microenvironments of metal-binding sites in calmodulin.
- Published
- 1987
- Full Text
- View/download PDF
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