31 results on '"Duan, N."'
Search Results
2. Further contraction of ZrW2O8
- Author
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Duan, N., Kameswari, U., and Sleight, A. W.
- Subjects
Chemical bonds -- Research ,Hydrogen bonding -- Research ,Neutrons -- Diffraction ,Zirconium -- Research ,Chemistry - Abstract
Research is presented describing the insertion of water into structure of cubic zirconium tungstate, ZrW2O8. The Zr-O or W-O bond lengths are not shortened in spite of a 10% volumetric contraction. It is presumed that hydrogen bonding forces cause pulling in the framework.
- Published
- 1999
3. Development of an Automated Capture-SELEX Device for Efficient Screening of β-Conglycinin Aptamer.
- Author
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Zhang Y, Zhang S, Ning Z, Lin X, Duan N, Wang Z, and Wu S
- Subjects
- Thermodynamics, Glycine max chemistry, Allergens chemistry, Allergens immunology, Molecular Docking Simulation, Seed Storage Proteins chemistry, Antigens, Plant chemistry, Antigens, Plant immunology, Globulins chemistry, Soybean Proteins chemistry, Aptamers, Nucleotide chemistry, SELEX Aptamer Technique methods, SELEX Aptamer Technique instrumentation
- Abstract
β-Conglycinin is the main allergen present in soybeans, and it is causing wide concern due to its notable allergenicity, heat, and digestive enzyme resistance. Screening for aptamers that both recognize β-conglycinin and inhibit the allergic reactions that it triggers is necessary. Conventional aptamer screening is labor-intensive, requires skilled personnel, and has limited reproducibility. To address these limitations, an automated device was developed to enhance the efficiency of aptamer selection in Capture-SELEX. The device achieves highly integrated, reproducible, and accurate contamination control. Using this device, a high-affinity and specific aptamer, β-5, was selected with a K
d = 18.24 ± 2.42 nM for β-conglycinin, as confirmed by isothermal titration calorimetry and fluorescence polarization. Thermodynamic analysis revealed that enthalpy-driven binding and docking simulations clarified the recognition mechanism. Overall, this automated device enables high-efficiency aptamer generation for certain targets, with aptamer β-5 expected to play a vital role in the detection of β-conglycinin and the targeted inhibition of its allergic reaction.- Published
- 2024
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4. High-Performance Flexible Pressure Sensor with Micropyramid Structure for Human Motion Signal Detection and Electromagnetic Interference Shielding.
- Author
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Duan N, Zhang N, Shi Z, Wang J, Zhang C, Ni J, Cai Z, and Wang G
- Subjects
- Humans, Pressure, Dimethylpolysiloxanes chemistry, Carbon Fiber chemistry, Nanotubes, Carbon chemistry, Wearable Electronic Devices
- Abstract
Flexible pressure sensors have a wide range of applications in the field of human motion signal detection, but the electromagnetic radiation generated during the monitoring process has become an unavoidable problem. Nowadays, it is still a challenge to develop high-performance pressure sensors with excellent electromagnetic interference (EMI) shielding performance. Herein, the Ti
3 C2 TX MXene/carbon fiber/multiwalled carbon nanotube/polydimethylsiloxane (MXene/CMP) films with a micropyramidal structure were developed by the technology of vacuum high-temperature hot pressing and spray deposition. Benefiting from the dielectric loss of the conductive fillers and the presence of the microstructure, the MXene/CMP film exhibits excellent EMI shielding performance, and the EMI shielding efficiency (SE) can reach 49.37 dB. Besides, the introduction of CF effectively improves the mechanical properties of the MXene/CMP films, and the MXene nanosheets deposited on the surface of the film can reduce stress concentration, which in turn delays the expansion of cracks. Furthermore, the MXene/CMP sensor exhibits high sensitivity (89.76 kPa-1 ) and fast response/recovery time (61/60 ms). The deformation of microstructure and the construction of conductive networks enable the sensor to realize the monitoring of human motion signals (such as finger bending, knee bending, wrist bending, etc.). Meanwhile, the sensor maintains sensing stability even after 2000 pressure cycles, which can be attributed to the improvement in mechanical properties. In summary, the developed high-performance flexible pressure sensor with micropyramid structure has great application prospects in wearable devices and healthcare.- Published
- 2024
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5. Construction of Aptamer-Functionalized DNA Hydrogels for Effective Inhibition of Shiga Toxin II Toxicity.
- Author
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Chang Y, Zheng W, Duan M, Su T, Wang Z, Wu S, and Duan N
- Subjects
- Animals, Humans, Mice, Escherichia coli Infections drug therapy, Escherichia coli Infections prevention & control, Escherichia coli Infections microbiology, DNA chemistry, Anti-Bacterial Agents chemistry, Anti-Bacterial Agents pharmacology, Aptamers, Nucleotide chemistry, Hydrogels chemistry, Shiga Toxin 2 chemistry, Shiga Toxin 2 toxicity, Shiga Toxin 2 genetics, Shiga Toxin 2 antagonists & inhibitors
- Abstract
Bacterial infections have been seriously endangering public health and life, making it imperative to explore novel anti-infection strategies for their control. Herein, we constructed a DNA hydrogel encoded with aptamers (Apt-hydrogel) to inhibit Shiga toxin II (Stx2) toxicity, thereby alleviating Escherichia coli (EHEC) infection. The Apt-hydrogel was formed by two Y-shaped DNA scaffolds through rational design, where one end of Y was encoded with an aptamer sequence targeting the B subunit of Shiga toxin II (Stx2B). The Apt-hydrogel not only retained the high affinity of the aptamer but also provided protection for the aptamer, endowing it with better stability and biocompatibility. The results from in vitro and in vivo demonstrated good mediation effects of the Apt-hydrogel on Stx2 toxicity and confirmed its excellent inhibition activity. We hypothesized that the mechanism could be attributed to the high affinity of Apt-hydrogel for Stx2B, which effectively occupies the active site of Stx2B and its receptor Gb3. This interaction enhanced steric hindrance, thereby mediating their interaction and preventing Stx2 from entering the cell to exert toxicity. We anticipate that the novel Apt-hydrogel will expand the usage of aptamers and provide a new dimension for the Apt-hydrogel as a promising blocking assistant to inhibit Shiga toxin infections via a strong steric hindrance effect.
- Published
- 2024
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6. 4f-2p-3d Orbital Coupling in Ce-Ni 3 S 2 Enhancing the Urea Oxidation Reaction.
- Author
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Zheng W, Duan N, Yang Y, Wang P, Qu Y, Zong C, and Chen Q
- Abstract
The electrocatalytic urea oxidation reaction (UOR) provides a promising alternative to the oxygen evolution reaction (OER) for various renewable energy-related systems owing to its lower thermodynamic barriers. However, its optimization and commercial utilization were hampered due to a lack of mechanistic understanding. Here, we demonstrate a Ce-doped Ni
3 S2 catalyst supported on Ni foam (Ce-Ni3 S2 /NF) with superior activity toward UOR. The resultant Ce-Ni3 S2 /NF catalyst exhibits a lower Tafel slope of 20.3 mV dec-1 , a higher current density of 100 mA cm-2 at 1.39 V versus RHE, and better durability than those for Ni3 S2 /NF. Based on in situ synchrotron radiation X-ray absorption spectroscopy, in situ Fourier transform infrared (FTIR), and in situ Raman spectroscopy, we observe the structural reconstruction of sulfide and identify the adsorbed intermediates during UOR. Density functional theory (DFT) calculations reveal that Ce can regulate the electronic structure of Ni through Ce(4f)-O(2p)-Ni(3d) orbital electronic coupling. The modulated Ni sites have weaker adsorption of carbonaceous intermediates, thus accelerating the UOR. This work provides a promising route for the design of high-activity UOR catalysts.- Published
- 2024
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7. Rational Design of a Robust G-Quadruplex Aptamer as an Inhibitor to Alleviate Listeria monocytogenes Infection.
- Author
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Chen X, Chang Y, Ye M, Wang Z, Wu S, and Duan N
- Subjects
- Humans, Molecular Docking Simulation, Mutation, Bacterial Proteins metabolism, Listeria monocytogenes metabolism, Listeriosis drug therapy, Listeriosis genetics, Listeriosis metabolism
- Abstract
Listeria monocytogenes (LM) is one of the most invasive foodborne pathogens that cause listeriosis, making it imperative to explore novel inhibiting strategies for alleviating its infection. The adhesion and invasion of LM within host cells are partly orchestrated by an invasin protein internalin A (InlA), which facilitates bacterial passage by interacting with the host cell E-cadherin (E-Cad). Hence, in this work, we proposed an aptamer blocking strategy by binding to the region on InlA that directly mediated E-Cad receptor engagement, thereby alleviating LM infection. An aptamer GA8 with a robust G-quadruplex (G4) structural feature was designed through truncation and base mutation from the original aptamer A8. The molecular docking and dynamics analysis showed that the InlA/aptamer GA8 binding interface was highly overlapping with the natural InlA/E-Cad binding interface, which confirmed that GA8 can tightly and stably bind InlA and block more distinct epitopes on InlA that involved the interaction with E-Cad. On the cellular level, it was confirmed that GA8 effectively blocked LM adhesion with an inhibition rate of 78%. Overall, the robust G4 aptamer-mediated design provides a new direction for the development of inhibitors against other wide-ranging and emerging pathogens.
- Published
- 2024
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8. Fe-Co-Based Metal-Organic Frameworks as Peroxidase Mimics for Sensitive Colorimetric Detection and Efficient Degradation of Aflatoxin B 1 .
- Author
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Lin X, Li J, Wu J, Guo K, Duan N, Wang Z, and Wu S
- Subjects
- Peroxidase, Aflatoxin B1 analysis, Colorimetry, Hydrogen Peroxide, Coloring Agents, Limit of Detection, Metal-Organic Frameworks chemistry, Aptamers, Nucleotide chemistry, Biosensing Techniques
- Abstract
Building multifunctional platforms for integrating the detection and control of hazards has great significance in food safety and environment protection. Herein, bimetallic Fe-Co-based metal-organic frameworks (Fe-Co-MOFs) peroxidase mimics are prepared and applied to develop a bifunctional platform for the synergetic sensitive detection and controllable degradation of aflatoxin B
1 (AFB1 ). On the one hand, Fe-Co-MOFs with excellent peroxidase-like activity are combined with target-induced catalyzed hairpin assembly (CHA) to construct a colorimetric aptasensor for the detection of AFB1 . Specifically, the binding of aptamer with AFB1 releases the prelocked Trigger to initiate the CHA cycle between hairpin H2-modified Fe-Co-MOFs and hairpin H1-tethered magnetic nanoparticles to form complexes. After magnetic separation, the colorimetric signal of the supernatant in the presence of TMB and H2 O2 is inversely proportional to the target contents. Under optimal conditions, this biosensor enables the analysis of AFB1 with a limit of detection of 6.44 pg/mL, and high selectivity and satisfactory recovery in real samples are obtained. On the other hand, Fe-Co-MOFs with remarkable Fenton-like catalytic degradation performance for organic contaminants are further used for the detoxification of AFB1 after colorimetric detection. The AFB1 is almost completely removed within 120 min. Overall, the introduction of CHA improves the sensing sensitivity; efficient postcolorimetric-detection degradation of AFB1 reduces the secondary contamination and risk to the experimental environment and operators. This strategy is expected to provide ideas for designing other multifunctional platforms to integrate the detection and degradation of various hazards.- Published
- 2024
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9. Multiplex Assay of Cytokines with Tunable Detection Ranges for the Precise Diagnosis of Breast Cancer.
- Author
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Shi H, Zeng T, Liang Q, Yang J, Chen R, Wu S, Duan N, Zhao J, Li G, and Yin Y
- Subjects
- Humans, Female, Interleukin-6, C-Reactive Protein, Biomarkers, Procalcitonin, Cytokines, Breast Neoplasms diagnosis
- Abstract
Precise profiling of the cytokine panel consisting of different levels of cytokines can provide personalized information about several diseases at certain stages. In this study, we have designed and fabricated an "all-in-one" diagnostic tool kit to bioassay multiple inflammatory cytokines ranging from picograms per milliliter to μg/mL in a small cytokine panel. Taking advantage of the kit fabricated by the DNA-encoded assembly of nanocatalysts in dynamic regulation and signal amplification, we have demonstrated the multiplex, visual, and quantitative detection of C-reactive protein (CRP), procalcitonin (PCT), and interleukin-6 (IL-6) with limits of detection of 1.6 ng/mL (61.54 pM), 20 pg/mL (1.57 pM), and 4 pg/mL (0.19 pM), respectively. This diagnostic tool kit can work well with commercial kits for detecting serum cytokines from breast cancer patients treated with immunotherapies. Furthermore, a small cytokine panel composed of CRP, PCT, and IL-6 is revealed to be significantly heterogeneous in each patient and highly dynamic for different treatment courses, showing promise as a panel of quantitative biomarker candidates for individual treatments. So, our work may provide a versatile diagnostic tool kit for the visual detection of clinical biomarkers with an adjustable broad detection range.
- Published
- 2024
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10. Deoxynivalenol (DON)-Triggered Dual-Color Composite Probe Based on Gold Nanoclusters for Simultaneous Imaging of DON and miR-34a in Living Cells.
- Author
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Yu W, Kang L, Lin X, Duan N, Ying D, Wang Z, and Wu S
- Subjects
- Humans, Gold, Trichothecenes toxicity, Mycotoxins toxicity, MicroRNAs genetics, MicroRNAs metabolism
- Abstract
Deoxynivalenol (DON) is a mycotoxin secreted by Fusarium species, posing great harm to food safety and human health. Therefore, it is of great significance to study its toxic effects and mechanism. miR-34a is a representative biomarker during the process of DON-induced apoptosis. Herein, a DON-triggered dual-color composite probe was constructed for simultaneous imaging of DON and miR-34a in living cells. The aptamer blocks the recognition sequence of miR-34a to realize DON-triggered cell imaging. The specific binding of DON with its aptamer and HCR induced by miR-34a resulted in the recovery of fluorescence of the dual-color Au NCs. Under the optimal conditions, the correlation between the relative fluorescence intensities of dual-color Au NCs showed good linear relationships with the logarithm of DON and miR-34a concentration, respectively. With the increase in DON concentration (0-20 μg/mL) and stimulation time (0-12 h), the fluorescence of dual-color Au NCs gradually recovered. This dual-color Au NCs composite probe can realize simultaneous detection of DON and miR-34a induced by DON, which is significant for verifying the cytotoxic mechanism of DON.
- Published
- 2023
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11. Electronic Excitation Characteristics and Spectral Behavior of Phosphate Anions.
- Author
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Zhang R, Duan N, Jiang L, Xu F, Cheng W, Zhu G, and Gao W
- Abstract
Absorption spectra are fundamental bases for the qualitative and quantitative analysis of the target chemical, and the development of an analytical model can be improved by studying its characteristics and rules. In the present study, the electronic excitation characteristics of phosphate anions (H
2 PO4 - , HPO4 2- , and PO4 3- ) were analyzed based on the charge-transfer spectrum. In addition, the absorption spectra of phosphate anions at the energy level of PBE0/6-311+G (d,p) were recorded based on the time-dependent density functional theory (TD-DFT) method. Different (HPO4 2- )n ·(H2 O)10- n molecular clusters were theoretically constructed, and the combined TD-DFT method and independent gradient model revealed that red shift of the maximum absorption wavelength (λmax ) with the increase of phosphate anion concentration (0-10 mM) may be caused by the decrease of hydrogen bond interaction. In addition, the prominent dispersion in the short-wave region mainly resulted in the red shift of λmax with the increase in optical path length (1-100 mm). Moreover, with the increase in spectral bandwidth (0.4-3.0 nm), λmax slightly blue-shifted because of the increase in energy through the slit, and repeatability of the corresponding absorbance measurement at λmax gradually improved. As the spectral bandwidth increased, light monochromaticity became poor, resulting in the decrease of the linearly fitted correlation coefficient of the concentration-absorbance curve. Finally, the multivariate analysis of variance results showed that the optical path length was the most significant factor that influenced the absorption spectral characteristics of phosphate anions. This study provides a basis for the qualitative and quantitative analysis of phosphate anions by using absorption spectra and also renders a theoretical reference for absorption spectroscopy of other chemicals.- Published
- 2023
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12. Biomimetic, Injectable, and Self-Healing Hydrogels with Sustained Release of Ranibizumab to Treat Retinal Neovascularization.
- Author
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Duan N, Mei L, Hu L, Yin X, Wei X, Li Y, Li Q, Zhao G, Zhou Q, and Du Z
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- Animals, Rabbits, Angiogenesis Inhibitors pharmacology, Angiogenesis Inhibitors therapeutic use, Hydrogels chemistry, Delayed-Action Preparations chemistry, Biomimetics, Vascular Endothelial Growth Factors, Ranibizumab pharmacology, Ranibizumab therapeutic use, Retinal Neovascularization drug therapy
- Abstract
Retinal neovascularization (RNV) is a typical feature of ischemic retinal diseases that can lead to traction retinal detachment and even blindness in patients, in which the vascular endothelial cell growth factor (VEGF) plays a pivotal role. However, most anti-VEGF drugs currently used for treating RNV, such as ranibizumab, need frequent and repeated intravitreal injections due to their short intravitreal half-life, which increases the incidence of complications. Herein, a hydrogel intravitreal drug delivery system (DDS) is prepared by a dynamic Schiff base reaction between aminated hyaluronic acid and aldehyde-functionalized Pluronic 127 for sustained release of ranibizumab. The prepared hydrogel system named HP@Ran exhibits excellent injectability, self-healing ability, structural stability, cytocompatibility, and blood compatibility. According to an in vitro drug release study, the hydrogel system continuously releases the model drug bovine serum albumin for more than 56 days. Importantly, in an in vivo rabbit persistent RNV model, the HP@Ran hydrogel system continuously releases pharmacologically active ranibizumab for more than 7 weeks and also exhibits superior anti-angiogenic efficacy over ranibizumab treatment by decreasing vascular leakage and neovascularization at 12 weeks. Thus, the developed HP@Ran hydrogel system possesses great potential for intravitreal DDS for the treatment of RNV.
- Published
- 2023
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13. Laser-Printed Paper-Based Microfluidic Chip Based on a Multicolor Fluorescence Carbon Dot Biosensor for Visual Determination of Multiantibiotics in Aquatic Products.
- Author
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Tong X, Lin X, Duan N, Wang Z, and Wu S
- Subjects
- Humans, Microfluidics, Carbon, Ecosystem, Molybdenum, Anti-Bacterial Agents, Chloramphenicol analysis, Oxytetracycline, Biosensing Techniques methods
- Abstract
Excessive use of antibiotics in aquaculture severely endangers human health and ecosystems, which has raised significant concerns in recent years. However, conventional laboratory-based approaches regularly required time or skilled manpower. Herein, we propose a point-of-care-testing (POCT) biosensor detection device for the simultaneous determination of multiantibiotics without complex equipment or professional operators. A laser-printed paper-based microfluidic chip loaded with multicolor fluorescence nanoprobes (mCD-μPAD) was developed to rapidly detect sulfamethazine (SMZ), oxytetracycline (OTC), and chloramphenicol (CAP) on-site. These "fluorescence off" detection probes composed of carbon dots (CDs) conjugated with aptamers (donor) and MoS
2 nanosheets (acceptor) (CD-apt-MoS2 ) were based on Förster resonance energy transfer. Upon the addition of target antibiotics, the significantly recovered fluorescence signal on the μPAD can be sensitively perceived by employing a 3D-printed portable detection box through a smartphone. Under optimal conditions, this μPAD allowed for a rapid response of 15 min toward SMZ, OTC, and CAP with considerable sensitivities of 0.47, 0.48, and 0.34 ng/mL, respectively. In shrimp samples, the recoveries were 95.2-101.2, 96.4-105, and 96.7-106.1% with RSD below 6%. This paper-based sensor opens an avenue for on-site, high-throughput, and rapid detection methods and can be widely used in POCT in food safety.- Published
- 2022
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14. Discovery and Optimization of an Aptamer and Its Sensing Ability to Amantadine Based on SERS via Binary Metal Nanoparticles.
- Author
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Duan N, Ren K, Lyu C, Wang Z, and Wu S
- Subjects
- Humans, Gold, Spectrum Analysis, Raman methods, Amantadine, Limit of Detection, Aptamers, Nucleotide, Metal Nanoparticles, Biosensing Techniques methods
- Abstract
With the growing concern of illegal abuse of amantadine (AMD) and its potential harmful impact on humans, detection of AMD has become an urgent food safety and environmental topic. Biosensing is a promising method for this, but the effective recognition of AMD still remains a challenge. Herein, we isolated an aptamer (Am-20) for AMD through a 14-round iterative selection based on capture-SELEX. The preliminary interaction mechanism between AMD and Am-20 was clarified with the help of docking simulations. Facilitated by a base mutation and truncation strategy, an optimized aptamer Am-20-1 with a short length of 62-mer was obtained, which exhibited competitive affinity with a K
d value of 33.90 ± 5.16 nM. A structure-switching SERS-based aptasensor based on Am-20-1 was then established for AMD quantification via a binary metal nanoparticle-embedded Raman reporter substrate (AuNRs@ATP@AgNPs). The fabricated strategy showed a wide linear range (0.005∼25 ng/mL) and a low limit of detection (0.001 ng/mL) for AMD determination. We envision that the novel aptamer identified in this study will provide a complementary tool for specific recognition and detection of AMD and could assist in the supervision of illegal abuse of AMD.- Published
- 2022
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15. Effectively Selecting Aptamers for Targeting Aromatic Biogenic Amines and Their Application in Aptasensing Establishment.
- Author
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Duan N, Song M, Mi W, Wang Z, and Wu S
- Subjects
- Biogenic Amines, Molecular Docking Simulation, Tyramine, Aptamers, Nucleotide, SELEX Aptamer Technique
- Abstract
It is necessary to detect the biogenic amine (BA) content in food due to their toxicological effects and their role as an index of freshness for protein-rich foods. Aptamer-based techniques have the potential to provide alternative methods for sensitive and efficient monitoring of BAs. Herein, we described the selection and characterization of DNA aptamers for tyramine (TYR) and β-phenethylamine (PHE) using a one-pot coupled with separate selection strategy. During the selection process, melting curve analysis was developed to monitor the enrichment of the aptamer species, and a saturation of the selection was found at the 14th round. Based on the fluorescence assay, aptamers TYR-2 and PHE-2 showed high affinity to TYR and PHE with the dissociation constant values of 64.28 ± 10.4 and 71.64 ± 11.47 nM, respectively. The circular dichromatic and molecular docking technologies were employed for the preliminary binding mechanism analysis. The obtained aptamers TYR-2 and PHE-2 were used in a fluorescence method for the TYR and PHE determination with limits of detection of 0.34 and 0.39 ng/mL, respectively. In addition, the developed aptasensor was further applied to the TYR and PHE detection in pork and beer samples, and the recovery rate was between 95.6 and 104.2%. It was demonstrated that the selected aptamers had enormous potential as a molecular probe for the identification and determination of BAs.
- Published
- 2021
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16. Shape- and Color-Switchable Polyurethane Thermochromic Actuators Based on Metal-Containing Ionic Liquids.
- Author
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Wang Z, Hou X, Duan N, Ren Y, and Yan F
- Abstract
Many creatures have excellent control over their form, color, and morphology, allowing them to respond to the interaction of environmental stimuli better. Here, the bioinspired synergistic shape-color-switchable actuators based on thermally induced shape-memory triethanolamine cross-linked polyurethane (TEAPU) and thermochromic ionic liquids (ILs) were prepared. The thermochromic ILs with various metalized anions, including bis(1-butyl-3-methylimidazolium) tetrachloro nickelate ([Bmim]
2 [NiCl4 ]) and bis(1-butyl-3-methylimidazolium) tetrachloride cobalt ([Bmim]2 [CoCl4 ]), are investigated. The actuators exhibit thermochromic response, as evidenced by a shift in the color of the composites, which is due to the formation of the tetrahedral complex MCl4 2- (M = Ni and Co) after dehydration. The shape-color-switchable thermochromic actuators have strong molecular interaction between TEAPU and ILs and can mimic natural flowers and change the color and shape quickly in a narrow temperature range (30-70 °C). In addition, these thermochromic actuators can lift more than 50 times their weight and withstand strains of more than 1100%. The results represent the potential application in artificial muscle actuators and intelligent camouflages.- Published
- 2021
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17. Inorganic-Ligand Quantum Dots Meet Inorganic-Ligand Semiconductor Nanoplatelets: A Promising Fusion to Construct All-Inorganic Assembly.
- Author
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Shi Y, Lim SJ, Ma L, Duan N, Yan X, Tang X, Yang W, Yang S, Hu J, Smith AM, and Zhu X
- Abstract
By the reaction of inorganic-ligand CdS/Cd
2+ quantum dots (QDs) with inorganic-ligand CdSe/CdS/S2- nanoplatelets (NPLs), semiconductor CdS QDs were fused with CdSe/CdS NPLs to yield all-inorganic assemblies, accompanied by great photoluminescence-enhancement. These all-inorganic assemblies facilitate charge transport between each other and open up interesting prospects with electronic and optoelectronic nanodevices.- Published
- 2021
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18. Unexpected Polypseudorotaxanes Formed from the Self-assembly of β-Cyclodextrins with Poly( N-isopropylacrylamide) Homo- and Copolymers.
- Author
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Duan N, Lu H, Ye L, Zhang AY, and Feng ZG
- Abstract
Compared with polypseudorotaxanes (PPRs) formed from the self-assembly of β-cyclodextrins (β-CDs) with poly(propylene glycol) (PPG) and γ-CDs with poly( N-isopropylacrylamide) (PNIPAAm), the ratio of the inner cavity size of β-CD to the cross-sectional area of PNIPAAm appears not appropriate for their self-assembly. For a better understanding of the possibility of β-CDs including PNIPAAm and the crystal structure of PPRs formed therefrom, the PNIPAAm homo- and copolymers were subjected to self-assembly with β-CDs in an aqueous solution at room temperature. The results revealed that when β-CDs meet thicker PNIPAAms, the self-assembly takes place, not only giving rise to PPRs by a manner of main-chain inclusion complexation but also presenting the PPRs a matched over-fit crystal structure different from those of either a matched tight-fit β-CD-PPG PPR or a mismatched over-fit γ-CD-PNIPAAm PPR. This is most likely due to the thicker PNIPAAm adapting its unfavorable main-chain cross-sectional area to fit into the cavity of β-CDs by changing the side-chain conformations. Based on the X-ray diffraction patterns, a monoclinic crystal system was created from these PPRs and the unit cell parameters calculated were as follows: a = 15.3 Å, b = 10.3 Å, and c = 21.2 Å; β = 110.3°; and space group P2. It suggested that this matched over-fit crystal structure would possess a Mosaic crystal structure rather than a typical channel-like one.
- Published
- 2019
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19. Colorimetric Aptasensor Based on Truncated Aptamer and Trivalent DNAzyme for Vibrio parahemolyticus Determination.
- Author
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Sun Y, Duan N, Ma P, Liang Y, Zhu X, and Wang Z
- Subjects
- Animals, Aptamers, Nucleotide genetics, Limit of Detection, Nanoparticles chemistry, Vibrio parahaemolyticus genetics, Aptamers, Nucleotide chemistry, Biosensing Techniques methods, Colorimetry methods, DNA, Catalytic chemistry, Food Contamination analysis, Salmon microbiology, Vibrio parahaemolyticus isolation & purification
- Abstract
In this work, after optimizing the original aptamer sequence by truncation and site-directed mutagenesis, a simple and sensitive colorimetric aptasensor was established for detecting the widespread food-borne pathogen Vibrio parahemolyticus ( V. parahemolyticus). The detection strategy was based on the competition for an V. parahemolyticus specific aptamer between its complementary DNA (cDNA) and V. parahemolyticus. The aptamer-conjugated magnetic nanoparticles (MNPs) were used as capture probes, and the G-quadruplex (G4) DNAzyme was employed as the signal amplifying element. Under optimal conditions, a wide linear detection range (from 10
2 to 107 cfu/mL) was available, and the detection limit could be as low as 10 cfu/mL. This method was also used to detect V. parahemolyticus in contaminated salmon samples, and the results showed good consistency with those obtained from standard plate counting method. Therefore, this novel aptasensor could be a good candidate for sensitive and selective detection of V. parahemolyticus without complicated operations.- Published
- 2019
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20. Magnetic Separation-Based Multiple SELEX for Effectively Selecting Aptamers against Saxitoxin, Domoic Acid, and Tetrodotoxin.
- Author
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Gu H, Duan N, Xia Y, Hun X, Wang H, and Wang Z
- Subjects
- Aptamers, Nucleotide chemistry, Graphite chemistry, Kainic Acid chemistry, Kainic Acid isolation & purification, Kinetics, Magnetics instrumentation, Marine Toxins chemistry, Oxides chemistry, SELEX Aptamer Technique instrumentation, Saxitoxin chemistry, Tetrodotoxin chemistry, Kainic Acid analogs & derivatives, Magnetics methods, Marine Toxins isolation & purification, SELEX Aptamer Technique methods, Saxitoxin isolation & purification, Tetrodotoxin isolation & purification
- Abstract
In this study, a novel magnetic separation-based multiple systematic evolution of ligands by exponential enrichment (SELEX) was applied to select aptamers simultaneously against three kinds of marine biotoxins, including domoic acid (DA), saxitoxin (STX), and tetrodotoxin (TTX). Magnetic reduced graphene oxide (MRGO) was prepared to adsorb unbound ssDNAs and simplify the separation step. In the multiple SELEX, after the initial twelve rounds of selection against mixed targets and the subsequent four respective rounds of selection against each single target, the three resulting ssDNA pools were cloned, sequenced, and analyzed. Several aptamer candidates were selected and subjected to the binding affinity and specificity test. Finally, DA-06 ( K
d = 62.07 ± 19.97 nM), TTX-07 ( Kd = 44.12 ± 15.38 nM), and STX-41 ( Kd = 61.44 ± 23.18 nM) showed high affinity and good specificity for DA, TTX, and STX, respectively. They were also applied to detect and quantify DA, TTX, and STX successfully. The other two multitarget aptamers, DA-01 and TTX-27, were also obtained, which can bind with either DA or TTX. These aptamers provide alternative recognition molecules to antibodies for biosensor applications.- Published
- 2018
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21. Selection, Identification, and Binding Mechanism Studies of an ssDNA Aptamer Targeted to Different Stages of E. coli O157:H7.
- Author
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Zou Y, Duan N, Wu S, Shen M, and Wang Z
- Subjects
- Aptamers, Nucleotide chemistry, Aptamers, Nucleotide metabolism, DNA, Single-Stranded chemistry, DNA, Single-Stranded metabolism, Escherichia coli O157 isolation & purification, Escherichia coli O157 metabolism, Aptamers, Nucleotide genetics, DNA, Single-Stranded genetics, Escherichia coli O157 genetics, Escherichia coli O157 growth & development, SELEX Aptamer Technique methods
- Abstract
Enterohemorrhagic Escherichia coli O157:H7 ( E. coli O157:H7) is known as an important food-borne pathogen related to public health. In this study, aptamers which could bind to different stages of E. coli O157:H7 (adjustment phase, log phase, and stationary phase) with high affinity and specificity were obtained by the whole cell-SELEX method through 14 selection rounds including three counter-selection rounds. Altogether, 32 sequences were obtained, and nine families were classified to select the optimal aptamer. To analyze affinity and specificity by flow cytometer, an ssDNA aptamer named Apt-5 was picked out as the optimal aptamer that recognizes different stages of E. coli O157:H7 specifically with the K
d value of 9.04 ± 2.80 nM. In addition, in order to study the binding mechanism, target bacteria were treated by proteinase K and trypsin, indicating that the specific binding site is not protein on the cell membrane. Furthermore, when we treated E. coli O157:H7 with EDTA, the result showed that the binding site might be lipopolysaccharide (LPS) on the outer membrane of E. coli O157:H7.- Published
- 2018
- Full Text
- View/download PDF
22. Aptamer-Based Lateral Flow Test Strip for Rapid Detection of Zearalenone in Corn Samples.
- Author
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Wu S, Liu L, Duan N, Li Q, Zhou Y, and Wang Z
- Subjects
- Aptamers, Nucleotide chemistry, Gold chemistry, Limit of Detection, Metal Nanoparticles chemistry, SELEX Aptamer Technique instrumentation, Food Contamination analysis, SELEX Aptamer Technique methods, Zea mays chemistry, Zearalenone analysis
- Abstract
An aptamer-based lateral flow test strip was developed for the detection of zearalenone (ZEN). This assay was based on the competition for the aptamer between ZEN and its complementary sequence. Several experimental conditions that could influence sensitivity have been investigated, including the concentration of aptamer and NaCl used in the probe preparation, the mole ratio of streptavidin and biotinylated DNA used in the preparation of test line and control line, and the loading quantity of gold nanoparticles-aptamer conjugates (AuNPs-Apt). Under the optimal experimental conditions, we successfully detected ZEN within a detection range of 5-200 ng/mL and the visual limit of detection of 20 ng/mL. This aptamer-based strip was successfully applied to the determination of ZEN in spiked corn samples, and the recoveries were from 93.4% to 114.2%. All detections can be achieved within 5 min. The results demonstrated that the developed aptamer-based lateral flow test strip is a potential alternative tool for the rapid and sensitive detection of ZEN.
- Published
- 2018
- Full Text
- View/download PDF
23. Selection and Application of ssDNA Aptamers against Clenbuterol Hydrochloride Based on ssDNA Library Immobilized SELEX.
- Author
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Duan N, Gong W, Wu S, and Wang Z
- Subjects
- Animals, Aptamers, Nucleotide genetics, Biological Assay instrumentation, DNA, Single-Stranded genetics, Meat analysis, SELEX Aptamer Technique instrumentation, Swine, Adrenergic beta-Agonists analysis, Aptamers, Nucleotide chemistry, Biological Assay methods, Clenbuterol analysis, DNA, Single-Stranded chemistry, Food Contamination analysis, SELEX Aptamer Technique methods
- Abstract
Clenbuterol hydrochloride (CLB) is often abused as additive feed for livestock to decrease adipose tissue deposition and to increase growth rate. It raises a potential risk to human health through the consumption of animal product. In this study, aptamers with higher affinity and specificity were screened through 16 selection rounds based on the ssDNA library immobilized systematic evolution of ligands by exponential enrichment (SELEX) technique. After cloning and sequencing, five aptamer candidates were picked out for affinity and specificity assays based on a graphene oxide (GO) adsorption method. The results showed that the aptamer CLB-2 binds specifically against CLB with a dissociation constant, K
d , value of 76.61 ± 12.70 nM. In addition, an aptamer-based fluorescence bioassay was established for CLB analysis. The correlation between the CLB concentration and fluorescent signal was found to be linear within the range of 0.10 to 50 ng/mL with a limit of detection of 0.07 ng/mL. It has been further applied for the determination of CLB in pork samples, showing its great potential for sensitive analysis in food safety control.- Published
- 2017
- Full Text
- View/download PDF
24. Realization of Functional Complete Stateful Boolean Logic in Memristive Crossbar.
- Author
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Li Y, Zhou YX, Xu L, Lu K, Wang ZR, Duan N, Jiang L, Cheng L, Chang TC, Chang KC, Sun HJ, Xue KH, and Miao XS
- Abstract
Nonvolatile stateful logic computing in memristors is a promising paradigm with which to realize the unity of information storage and processing in the same physical location that has shown great feasibility for breaking the von Neumann bottleneck in traditional computing architecture. How to reduce the computational complexity of memristor-based logic functions is a matter of concern. Here, based on a general logic expression, we proposed a method to implement the arbitrary logic of complete 16 Boolean logic in two steps with one memristor in the crossbar architecture. A representative functional complete NAND logic is successfully experimentally demonstrated in the filamentary Ag-AgGeTe-Ta memristors to prove the validity of our method. We believe our work may promote the development of the revolutionary logic in memory architectures.
- Published
- 2016
- Full Text
- View/download PDF
25. Colorimetric Aptasensor Based on Enzyme for the Detection of Vibrio parahemolyticus.
- Author
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Wu S, Wang Y, Duan N, Ma H, and Wang Z
- Subjects
- Benzidines chemistry, Biosensing Techniques instrumentation, Colorimetry instrumentation, Gold chemistry, Hydrogen Peroxide chemistry, Limit of Detection, Metal Nanoparticles chemistry, Vibrio parahaemolyticus chemistry, Biosensing Techniques methods, Colorimetry methods, Horseradish Peroxidase chemistry, Vibrio parahaemolyticus isolation & purification
- Abstract
A simple colorimetric aptasensor system has been developed to detect Vibrio parahemolyticus. Magnetic nanoparticles (MNPs) are synthesized and conjugated with specific aptamers against target and used as capture probes. In addition, this method employs gold nanoparticles (AuNPs) as carriers of horseradish peroxidase (HRP) and aptamers, which served as signal probes. In the presence of target, a "sandwich-type" complex of AuNPs-HRP-aptamer-target-aptamer-MNPs is formed through specific recognition of aptamers and corresponding target. As a result, HRP molecules confined at the surface of the "sandwich" complexes catalyze the enzyme substrate, 3,3',5,5'-tetramethylbenzidine (TMB) and H2O2 and generate an optical signal. Under optimal conditions, the signals are linearly dependent on V. parahemolyticus concentrations from 10 to 10(6) colony-forming units (cfu)/mL in a logarithmic plot, with a limit of detection of 10 cfu/mL. Owing to AuNPs, a large amount of HRP could be loaded, resulting in an amplified signal, and the sensitivity would be improved. This strategy has the potential of being extended to the construction of simple monitor systems for a variety of biomolecules related to food safety.
- Published
- 2015
- Full Text
- View/download PDF
26. Screening and identification of DNA aptamers against T-2 toxin assisted by graphene oxide.
- Author
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Chen X, Huang Y, Duan N, Wu S, Xia Y, Ma X, Zhu C, Jiang Y, and Wang Z
- Subjects
- Adsorption, Food Contamination analysis, Limit of Detection, Aptamers, Nucleotide chemistry, Beverages analysis, Graphite chemistry, Oxides chemistry, SELEX Aptamer Technique methods, T-2 Toxin analysis
- Abstract
A high-affinity ssDNA aptamer that specifically binds to T-2 toxin was generated by the systemic evolution of ligands by exponential enrichment (SELEX) procedure assisted by graphene oxide (GO). After 10 rounds of selection against T-2 toxin, a highly enriched ssDNA pool was sequenced and the representative aptamers were subjected to binding assays to evaluate their affinity and specificity. Circular dichroism spectroscopy was also used to study the inherent interaction of T-2 toxin and the preferred aptamer Seq.16, which demonstrated a low dissociation constant (Kd) of 20.8 ± 3.1 nM and excellent selectivity for T-2 toxin. Using the selected aptamer Seq.16 as the recognition element, an aptamer-based fluorescent bioassay was developed for the measurement of T-2 in beer samples with a linear range from 0.5 to 37.5 μM (R(2) = 0.988) and a limit of detection (LOD) of 0.4 μM. The results indicate that GO-SELEX technology is appropriate for the screening of aptamers against small-molecule toxins, offering a promising application for aptamer-based biosensors.
- Published
- 2014
- Full Text
- View/download PDF
27. Simultaneous aptasensor for multiplex pathogenic bacteria detection based on multicolor upconversion nanoparticles labels.
- Author
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Wu S, Duan N, Shi Z, Fang C, and Wang Z
- Subjects
- Color, SELEX Aptamer Technique, Bacteria pathogenicity, Nanoparticles
- Abstract
A highly sensitive and specific multiplex method for the simultaneous detection of three pathogenic bacteria was fabricated using multicolor upconversion nanoparticles (UCNPs) as luminescence labels coupled with aptamers as the molecular recognition elements. Multicolor UCNPs were synthesized via doping with various rare-earth ions to obtain well-separated emission peaks. The aptamer sequences were selected using the systematic evolution of ligands by exponential enrichment (SELEX) strategy for Staphylococcus aureus, Vibrio parahemolyticus, and Salmonella typhimurium. When applied in this method, aptamers can be used for the specific recognition of the bacteria from complex mixtures, including those found in real food matrixes. Aptamers and multicolor UCNPs were employed to selectively capture and simultaneously quantify the three target bacteria on the basis of the independent peaks. Under optimal conditions, the correlation between the concentration of three bacteria and the luminescence signal was found to be linear from 50-10(6) cfu mL(-1). Improved by the magnetic separation and concentration effect of Fe3O4 magnetic nanoparticles, the limits of detection of the developed method were found to be 25, 10, and 15 cfu mL(-1) for S. aureus, V. parahemolyticus, and S. typhimurium, respectively. The capability of the bioassay in real food samples was also investigated, and the results were consistent with experimental results obtained from plate-counting methods. This proposed method for the detection of various pathogenic bacteria based on multicolor UCNPs has great potential in the application of food safety and multiplex nanosensors.
- Published
- 2014
- Full Text
- View/download PDF
28. Selection and characterization of aptamers against Salmonella typhimurium using whole-bacterium Systemic Evolution of Ligands by Exponential Enrichment (SELEX).
- Author
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Duan N, Wu S, Chen X, Huang Y, Xia Y, Ma X, and Wang Z
- Subjects
- Base Sequence, DNA Primers, Flow Cytometry, SELEX Aptamer Technique methods, Salmonella typhimurium genetics
- Abstract
In this paper, a high-affinity ssDNA aptamer binding to Salmonella typhimurium was obtained by a whole-bacterium-based Systemic Evolution of Ligands by Exponential Enrichment (SELEX) procedure. After nine rounds of selection with S. typhimurium as the target, a highly enriched oligonucleotide pool was sequenced and then grouped into different families based on primary sequence homology and secondary structure similarity. Eleven sequences from different families were selected for further characterization via flow cytometry analysis. The results showed that the sequence ST2P demonstrates affinity for S. typhimurium much more strongly and specifically than other sequences tested. The estimated Kd value of this particularly promising aptamer was 6.33 ± 0.58 nM. To demonstrate the potential use of the aptamers in the quantitative determination of S. typhimurium, a fluorescent bioassay with the aptamer ST2P was prepared. Under optimal conditions, the correlation between the concentration of S. typhimurium and fluorescent signal was found to be linear within the range of 50-10(6) cfu/mL (R(2) = 0.9957). The limit of detection (LOD) of the developed method was found to be 25 cfu/mL. This work demonstrates that this aptamer could potentially be used to improve the detection of S. typhimurium.
- Published
- 2013
- Full Text
- View/download PDF
29. Multiplexed fluorescence resonance energy transfer aptasensor between upconversion nanoparticles and graphene oxide for the simultaneous determination of mycotoxins.
- Author
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Wu S, Duan N, Ma X, Xia Y, Wang H, Wang Z, and Zhang Q
- Subjects
- Aptamers, Nucleotide chemistry, Aptamers, Nucleotide genetics, Base Sequence, Fumonisins analysis, Kinetics, Ochratoxins analysis, Time Factors, Aptamers, Nucleotide metabolism, Biosensing Techniques methods, Fluorescence Resonance Energy Transfer methods, Graphite chemistry, Mycotoxins analysis, Nanoparticles chemistry, Oxides chemistry
- Abstract
We presented a new aptasensor for mycotoxins, which was based on multiplexed fluorescence resonance energy transfer (FRET) between multicolor upconversion fluorescent nanoparticles (UCNPs) as donors and graphene oxide (GO) as the entire and effective acceptor. BaY(0.78)F(5):Yb(0.2), Er(0.02) and BaY(0.78)F(5):Yb(0.7), Tm(0.02) upconversion nanoparticles were synthesized and functionalized, respectively, with immobilized ochratoxin A (OTA)-aptamers and fumonisin B(1) (FB(1))-aptamers. On the basis of the strong π-π stacking effect between the nucleobases of the aptamers and the sp(2) atoms of GO, the aptamer modified-UCNPs can be brought in close proximity to the GO surface. The strong upconversion fluorescence both of BaY(0.78)F(5):Yb(0.2), Er(0.02) and BaY(0.78)F(5):Yb(0.2), Tm(0.02) can be completely quenched by the GO, because of a good overlap between the fluorescence emission of multicolor UCNPs and the absorption spectrum of GO. In contrast, in the presence of OTA and FB(1), the aptamers preferred to bind to their corresponding mycotoxins, which led to changes in the formation of aptamers, and therefore, aptamer modified-UCNPs were far away from the GO surface. Our study results showed that the fluorescence intensity of BaYF(5):Yb Er and BaYF(5):Yb Tm were related to the concentration of OTA and FB(1). We therefore developed a sensitive and simple platform for the simultaneous detection of OTA and FB(1) with multicolor UCNPs and GO as the FRET pair. The aptasensor provided a linear range from 0.05 to 100 ng·mL(-1) for OTA and 0.1 to 500 ng·mL(-1) for FB(1); the detection limit of OTA was 0.02 ng·mL(-1) and FB(1) was 0.1 ng·mL(-1). As a practical application, the aptasensor was used to monitor OTA and FB(1) level in naturally contaminated maize samples with the results consistent with that of a classic ELISA method. More importantly, the novel multiplexed FRET was established for the first time based on multiplexed energy donors to the entire energy acceptor; this work was expected to open up a new field of FRET system applications for various targets.
- Published
- 2012
- Full Text
- View/download PDF
30. Selection and identification of a DNA aptamer targeted to Vibrio parahemolyticus.
- Author
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Duan N, Wu S, Chen X, Huang Y, and Wang Z
- Subjects
- Aptamers, Nucleotide chemistry, DNA, Single-Stranded chemistry, DNA, Single-Stranded genetics, Gene Library, Kinetics, Nucleic Acid Conformation, Vibrio parahaemolyticus genetics, Aptamers, Nucleotide genetics, SELEX Aptamer Technique methods, Vibrio parahaemolyticus isolation & purification
- Abstract
A whole-bacterium systemic evolution of ligands by exponential enrichment (SELEX) method was applied to a combinatorial library of FAM-labeled single-stranded DNA molecules to identify DNA aptamers demonstrating specific binding to Vibrio parahemolyticus . FAM-labeled aptamer sequences with high binding affinity to V. parahemolyticus were identified by flow cytometric analysis. Aptamer A3P, which showed a particularly high binding affinity in preliminary studies, was chosen for further characterization. This aptamer displayed a dissociation constant (K(d)) of 16.88 ± 1.92 nM. Binding assays to assess the specificity of aptamer A3P showed a high binding affinity (76%) for V. parahemolyticus and a low apparent binding affinity (4%) for other bacteria. Whole-bacterium SELEX is a promising technique for the design of aptamer-based molecular probes for microbial pathogens that does not require the labor-intensive steps of isolating and purifying complex markers or targets.
- Published
- 2012
- Full Text
- View/download PDF
31. Hydrothermal Synthesis and Structure of a Potassium Tantalum Defect Pyrochlore.
- Author
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Duan N, Tian ZR, Willis WS, Suib SL, Newsam JM, and Levine SM
- Abstract
The synthesis and crystal structure of potassium tantalate (KTa(2)(O,OH)(6).1.8H(2)O) with a defect pyrochlore structure are reported. The compound was crystallized directly from tantalum pentoxide in basic solution under hydrothermal conditions at temperatures as low as 200 degrees C. Ion exchange of this substance in acid yielded an H-type defect pyrochlore. Both highly crystalline K-type and H-type materials absorb argon and have BET surface areas of about 14 m(2)/g. The crystal structures were refined by the Rietveld least-squares method from powder X-ray diffraction data. The final R(wp) and chi(2) were 7.70% and 2.79, respectively. The high thermal stability and control of acidity of these materials, along with the simple and cheap synthesis, may find many applications in sorption, catalysis, and microelectronics.
- Published
- 1998
- Full Text
- View/download PDF
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