118 results on '"Boutin P"'
Search Results
2. Local vs distributed representations: What is the right basis for interpretability?
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Colin, Julien, Goetschalckx, Lore, Fel, Thomas, Boutin, Victor, Gopal, Jay, Serre, Thomas, and Oliver, Nuria
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Much of the research on the interpretability of deep neural networks has focused on studying the visual features that maximally activate individual neurons. However, recent work has cast doubts on the usefulness of such local representations for understanding the behavior of deep neural networks because individual neurons tend to respond to multiple unrelated visual patterns, a phenomenon referred to as "superposition". A promising alternative to disentangle these complex patterns is learning sparsely distributed vector representations from entire network layers, as the resulting basis vectors seemingly encode single identifiable visual patterns consistently. Thus, one would expect the resulting code to align better with human perceivable visual patterns, but supporting evidence remains, at best, anecdotal. To fill this gap, we conducted three large-scale psychophysics experiments collected from a pool of 560 participants. Our findings provide (i) strong evidence that features obtained from sparse distributed representations are easier to interpret by human observers and (ii) that this effect is more pronounced in the deepest layers of a neural network. Complementary analyses also reveal that (iii) features derived from sparse distributed representations contribute more to the model's decision. Overall, our results highlight that distributed representations constitute a superior basis for interpretability, underscoring a need for the field to move beyond the interpretation of local neural codes in favor of sparsely distributed ones.
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- 2024
3. Detecting Underdiagnosed Medical Conditions with Deep Learning-Based Opportunistic CT Imaging
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Aali, Asad, Johnston, Andrew, Blankemeier, Louis, Van Veen, Dave, Derry, Laura T, Svec, David, Hom, Jason, Boutin, Robert D., and Chaudhari, Akshay S.
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
Abdominal computed tomography (CT) scans are frequently performed in clinical settings. Opportunistic CT involves repurposing routine CT images to extract diagnostic information and is an emerging tool for detecting underdiagnosed conditions such as sarcopenia, hepatic steatosis, and ascites. This study utilizes deep learning methods to promote accurate diagnosis and clinical documentation. We analyze 2,674 inpatient CT scans to identify discrepancies between imaging phenotypes (characteristics derived from opportunistic CT scans) and their corresponding documentation in radiology reports and ICD coding. Through our analysis, we find that only 0.5%, 3.2%, and 30.7% of scans diagnosed with sarcopenia, hepatic steatosis, and ascites (respectively) through either opportunistic imaging or radiology reports were ICD-coded. Our findings demonstrate opportunistic CT's potential to enhance diagnostic precision and accuracy of risk adjustment models, offering advancements in precision medicine.
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- 2024
4. Merlin: A Vision Language Foundation Model for 3D Computed Tomography
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Blankemeier, Louis, Cohen, Joseph Paul, Kumar, Ashwin, Van Veen, Dave, Gardezi, Syed Jamal Safdar, Paschali, Magdalini, Chen, Zhihong, Delbrouck, Jean-Benoit, Reis, Eduardo, Truyts, Cesar, Bluethgen, Christian, Jensen, Malte Engmann Kjeldskov, Ostmeier, Sophie, Varma, Maya, Valanarasu, Jeya Maria Jose, Fang, Zhongnan, Huo, Zepeng, Nabulsi, Zaid, Ardila, Diego, Weng, Wei-Hung, Junior, Edson Amaro, Ahuja, Neera, Fries, Jason, Shah, Nigam H., Johnston, Andrew, Boutin, Robert D., Wentland, Andrew, Langlotz, Curtis P., Hom, Jason, Gatidis, Sergios, and Chaudhari, Akshay S.
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
Over 85 million computed tomography (CT) scans are performed annually in the US, of which approximately one quarter focus on the abdomen. Given the current radiologist shortage, there is a large impetus to use artificial intelligence to alleviate the burden of interpreting these complex imaging studies. Prior state-of-the-art approaches for automated medical image interpretation leverage vision language models (VLMs). However, current medical VLMs are generally limited to 2D images and short reports, and do not leverage electronic health record (EHR) data for supervision. We introduce Merlin - a 3D VLM that we train using paired CT scans (6+ million images from 15,331 CTs), EHR diagnosis codes (1.8+ million codes), and radiology reports (6+ million tokens). We evaluate Merlin on 6 task types and 752 individual tasks. The non-adapted (off-the-shelf) tasks include zero-shot findings classification (31 findings), phenotype classification (692 phenotypes), and zero-shot cross-modal retrieval (image to findings and image to impressions), while model adapted tasks include 5-year disease prediction (6 diseases), radiology report generation, and 3D semantic segmentation (20 organs). We perform internal validation on a test set of 5,137 CTs, and external validation on 7,000 clinical CTs and on two public CT datasets (VerSe, TotalSegmentator). Beyond these clinically-relevant evaluations, we assess the efficacy of various network architectures and training strategies to depict that Merlin has favorable performance to existing task-specific baselines. We derive data scaling laws to empirically assess training data needs for requisite downstream task performance. Furthermore, unlike conventional VLMs that require hundreds of GPUs for training, we perform all training on a single GPU., Comment: 18 pages, 7 figures
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- 2024
5. Latent Representation Matters: Human-like Sketches in One-shot Drawing Tasks
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Boutin, Victor, Mukherji, Rishav, Agrawal, Aditya, Muzellec, Sabine, Fel, Thomas, Serre, Thomas, and VanRullen, Rufin
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Humans can effortlessly draw new categories from a single exemplar, a feat that has long posed a challenge for generative models. However, this gap has started to close with recent advances in diffusion models. This one-shot drawing task requires powerful inductive biases that have not been systematically investigated. Here, we study how different inductive biases shape the latent space of Latent Diffusion Models (LDMs). Along with standard LDM regularizers (KL and vector quantization), we explore supervised regularizations (including classification and prototype-based representation) and contrastive inductive biases (using SimCLR and redundancy reduction objectives). We demonstrate that LDMs with redundancy reduction and prototype-based regularizations produce near-human-like drawings (regarding both samples' recognizability and originality) -- better mimicking human perception (as evaluated psychophysically). Overall, our results suggest that the gap between humans and machines in one-shot drawings is almost closed.
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- 2024
6. On the Rashomon ratio of infinite hypothesis sets
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Coupkova, Evzenie and Boutin, Mireille
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Computer Science - Machine Learning ,Mathematics - Probability ,Statistics - Machine Learning ,68T07, 68T10 - Abstract
Given a classification problem and a family of classifiers, the Rashomon ratio measures the proportion of classifiers that yield less than a given loss. Previous work has explored the advantage of a large Rashomon ratio in the case of a finite family of classifiers. Here we consider the more general case of an infinite family. We show that a large Rashomon ratio guarantees that choosing the classifier with the best empirical accuracy among a random subset of the family, which is likely to improve generalizability, will not increase the empirical loss too much. We quantify the Rashomon ratio in two examples involving infinite classifier families in order to illustrate situations in which it is large. In the first example, we estimate the Rashomon ratio of the classification of normally distributed classes using an affine classifier. In the second, we obtain a lower bound for the Rashomon ratio of a classification problem with a modified Gram matrix when the classifier family consists of two-layer ReLU neural networks. In general, we show that the Rashomon ratio can be estimated using a training dataset along with random samples from the classifier family and we provide guarantees that such an estimation is close to the true value of the Rashomon ratio.
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- 2024
7. Geochromatic Number when Crossings are Independent
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Boutin, Debra and Dean, Alice
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Mathematics - Combinatorics - Abstract
A geometric graph, $\overline{G}$, is a graph drawn in the plane, with straight line edges and vertices in general position. A geometric homomorphism between two geometric graphs $\overline{G}$, $\overline{H}$ is a vertex map $f:\overline{G}\to\overline{H}$ that preserves vertex adjacency and edge crossings. The geochromatic number of $\overline{G}$, denoted $X(\overline{G})$, is the smallest integer $n$ so that there is a geometric homomorphism from $\overline{G}$ to some geometric realization of $K_n$. Recall that the chromatic number of an abstract graph $G$, denoted $\chi(G)$, is the smallest integer $n$ for which there is a graph homomorphism from $G$ to $K_n$. It is immediately clear that $\chi(G)\leq X(\overline{G})$. This paper establishes some upper bounds on $X(\overline{G})$ in terms of $\chi(G)$. For instance, if all crossings are at distance at least 1 from each other, then $X(\overline{G})\leq 3\chi(G)$. However, there are more precise results. If all crossing are at distance at least 2, then $X(\overline{G})\leq \chi(G)+2$. If all crossings are at distance at least 1, and there is a graph homomorphism $f: G \to K_n$ that maps no pair of edges that cross in $\overline{G}$ to the same edge in $K_n$, then $X(\overline{G})\leq 2n$. Finally, if $\chi(G)\in \{2,3\}$ and all crossings are at distance at least 1, then $X(\overline{G})\leq 2\chi(G)$.
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- 2024
8. Path Tracking using Echoes in an Unknown Environment: the Issue of Symmetries and How to Break Them
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Boutin, Mireille and Kemper, Gregor
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Mathematics - Metric Geometry ,Computer Science - Robotics ,51K99, 51-08, 70E60 - Abstract
This paper deals with the problem of reconstructing the path of a vehicle in an unknown environment consisting of planar structures using sound. Many systems in the literature do this by using a loudspeaker and microphones mounted on a vehicle. Symmetries in the environment lead to solution ambiguities for such systems. We propose to resolve this issue by placing the loudspeaker at a fixed location in the environment rather than on the vehicle. The question of whether this will remove ambiguities regardless of the environment geometry leads to a question about breaking symmetries that can be phrased in purely mathematical terms. We solve this question in the affirmative if the geometry is in dimension three or bigger, and give counterexamples in dimension two. Excluding the rare situations where the counterexamples arise, we also give an affirmative answer in dimension two. Our results lead to a simple path reconstruction algorithm for a vehicle carrying four microphones navigating within an environment in which a loudspeaker at a fixed position emits short bursts of sounds. This algorithm could be combined with other methods from the literature to construct a path tracking system for vehicles navigating within a potentially symmetric environment.
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- 2024
9. Quantitative Imaging of Regional Cerebral Protein Synthesis in Clinical Alzheimer's Disease by [11C]Leucine PET
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Herholz, Karl, McMahon, Adam, Thompson, Jennifer C., Jones, Matthew, Boutin, Herve, Gregory, Jamil, Parker, Christine A., and Hinz, Rainer
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- 2024
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10. Opportunities for Earth Observation to Inform Risk Management for Ocean Tipping Points
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Wood, Richard A., Baker, Jonathan A., Beaugrand, Grégory, Boutin, Jacqueline, Conversi, Alessandra, Donner, Reik V., Frenger, Ivy, Goberville, Eric, Hayashida, Hakase, Koeve, Wolfgang, Kvale, Karin, Landolfi, Angela, Maslowski, Wieslaw, Oschlies, Andreas, Romanou, Anastasia, Somes, Christopher J., Stocker, Thomas F., and Swingedouw, Didier
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- 2024
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11. A genome-wide association analysis reveals new pathogenic pathways in gout
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Major, Tanya J., Takei, Riku, Matsuo, Hirotaka, Leask, Megan P., Sumpter, Nicholas A., Topless, Ruth K., Shirai, Yuya, Wang, Wei, Cadzow, Murray J., Phipps-Green, Amanda J., Li, Zhiqiang, Ji, Aichang, Merriman, Marilyn E., Morice, Emily, Kelley, Eric E., Wei, Wen-Hua, McCormick, Sally P. A., Bixley, Matthew J., Reynolds, Richard J., Saag, Kenneth G., Fadason, Tayaza, Golovina, Evgenia, O’Sullivan, Justin M., Stamp, Lisa K., Dalbeth, Nicola, Abhishek, Abhishek, Doherty, Michael, Roddy, Edward, Jacobsson, Lennart T. H., Kapetanovic, Meliha C., Melander, Olle, Andrés, Mariano, Pérez-Ruiz, Fernando, Torres, Rosa J., Radstake, Timothy, Jansen, Timothy L., Janssen, Matthijs, Joosten, Leo A. B., Liu, Ruiqi, Gaal, Orsolya I., Crişan, Tania O., Rednic, Simona, Kurreeman, Fina, Huizinga, Tom W. J., Toes, René, Lioté, Frédéric, Richette, Pascal, Bardin, Thomas, Ea, Hang Korng, Pascart, Tristan, McCarthy, Geraldine M., Helbert, Laura, Stibůrková, Blanka, Tausche, Anne-K., Uhlig, Till, Vitart, Véronique, Boutin, Thibaud S., Hayward, Caroline, Riches, Philip L., Ralston, Stuart H., Campbell, Archie, MacDonald, Thomas M., Nakayama, Akiyoshi, Takada, Tappei, Nakatochi, Masahiro, Shimizu, Seiko, Kawamura, Yusuke, Toyoda, Yu, Nakaoka, Hirofumi, Yamamoto, Ken, Matsuo, Keitaro, Shinomiya, Nariyoshi, Ichida, Kimiyoshi, Lee, Chaeyoung, Bradbury, Linda A., Brown, Matthew A., Robinson, Philip C., Buchanan, Russell R. C., Hill, Catherine L., Lester, Susan, Smith, Malcolm D., Rischmueller, Maureen, Choi, Hyon K., Stahl, Eli A., Miner, Jeff N., Solomon, Daniel H., Cui, Jing, Giacomini, Kathleen M., Brackman, Deanna J., Jorgenson, Eric M., Liu, Hongbo, Susztak, Katalin, Shringarpure, Suyash, So, Alexander, Okada, Yukinori, Li, Changgui, Shi, Yongyong, and Merriman, Tony R.
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- 2024
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12. Automated abdominal CT contrast phase detection using an interpretable and open-source artificial intelligence algorithm
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Reis, Eduardo Pontes, Blankemeier, Louis, Zambrano Chaves, Juan Manuel, Jensen, Malte Engmann Kjeldskov, Yao, Sally, Truyts, Cesar Augusto Madid, Willis, Marc H., Adams, Scott, Amaro Jr, Edson, Boutin, Robert D., and Chaudhari, Akshay S.
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- 2024
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13. Measuring and Demonstrating the Value of Patient Engagement Across the Medicines Lifecycle: A Patient Engagement Impact Measurement Framework
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Klein, Beyza, Perfetto, Eleanor M., Oehrlein, Elisabeth M., Weston, Fay, Lobban, Trudie C. A., and Boutin, Marc
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- 2024
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14. Interferometric Single-Shot Parity Measurement in an InAs-Al Hybrid Device
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Aghaee, Morteza, Ramirez, Alejandro Alcaraz, Alam, Zulfi, Ali, Rizwan, Andrzejczuk, Mariusz, Antipov, Andrey, Astafev, Mikhail, Barzegar, Amin, Bauer, Bela, Becker, Jonathan, Bhaskar, Umesh Kumar, Bocharov, Alex, Boddapati, Srini, Bohn, David, Bommer, Jouri, Bourdet, Leo, Bousquet, Arnaud, Boutin, Samuel, Casparis, Lucas, Chapman, Benjamin James, Chatoor, Sohail, Christensen, Anna Wulff, Chua, Cassandra, Codd, Patrick, Cole, William, Cooper, Paul, Corsetti, Fabiano, Cui, Ajuan, Dalpasso, Paolo, Dehollain, Juan Pablo, de Lange, Gijs, de Moor, Michiel, Ekefjärd, Andreas, Dandachi, Tareq El, Saldaña, Juan Carlos Estrada, Fallahi, Saeed, Galletti, Luca, Gardner, Geoff, Govender, Deshan, Griggio, Flavio, Grigoryan, Ruben, Grijalva, Sebastian, Gronin, Sergei, Gukelberger, Jan, Hamdast, Marzie, Hamze, Firas, Hansen, Esben Bork, Heedt, Sebastian, Heidarnia, Zahra, Zamorano, Jesús Herranz, Ho, Samantha, Holgaard, Laurens, Hornibrook, John, Indrapiromkul, Jinnapat, Ingerslev, Henrik, Ivancevic, Lovro, Jensen, Thomas, Jhoja, Jaspreet, Jones, Jeffrey, Kalashnikov, Konstantin V., Kallaher, Ray, Kalra, Rachpon, Karimi, Farhad, Karzig, Torsten, King, Evelyn, Kloster, Maren Elisabeth, Knapp, Christina, Kocon, Dariusz, Koski, Jonne, Kostamo, Pasi, Kumar, Mahesh, Laeven, Tom, Larsen, Thorvald, Lee, Jason, Lee, Kyunghoon, Leum, Grant, Li, Kongyi, Lindemann, Tyler, Looij, Matthew, Love, Julie, Lucas, Marijn, Lutchyn, Roman, Madsen, Morten Hannibal, Madulid, Nash, Malmros, Albert, Manfra, Michael, Mantri, Devashish, Markussen, Signe Brynold, Martinez, Esteban, Mattila, Marco, McNeil, Robert, Mei, Antonio B., Mishmash, Ryan V., Mohandas, Gopakumar, Mollgaard, Christian, Morgan, Trevor, Moussa, George, Nayak, Chetan, Nielsen, Jens Hedegaard, Nielsen, Jens Munk, Nielsen, William Hvidtfelt Padkær, Nijholt, Bas, Nystrom, Mike, O'Farrell, Eoin, Ohki, Thomas, Otani, Keita, Wütz, Brian Paquelet, Pauka, Sebastian, Petersson, Karl, Petit, Luca, Pikulin, Dima, Prawiroatmodjo, Guen, Preiss, Frank, Morejon, Eduardo Puchol, Rajpalke, Mohana, Ranta, Craig, Rasmussen, Katrine, Razmadze, David, Reentila, Outi, Reilly, David J., Ren, Yuan, Reneris, Ken, Rouse, Richard, Sadovskyy, Ivan, Sainiemi, Lauri, Sanlorenzo, Irene, Schmidgall, Emma, Sfiligoj, Cristina, Shah, Mustafeez Bashir, Simoes, Kevin, Singh, Shilpi, Sinha, Sarat, Soerensen, Thomas, Sohr, Patrick, Stankevic, Tomas, Stek, Lieuwe, Stuppard, Eric, Suominen, Henri, Suter, Judith, Teicher, Sam, Thiyagarajah, Nivetha, Tholapi, Raj, Thomas, Mason, Toomey, Emily, Tracy, Josh, Turley, Michelle, Upadhyay, Shivendra, Urban, Ivan, Van Hoogdalem, Kevin, Van Woerkom, David J., Viazmitinov, Dmitrii V., Vogel, Dominik, Watson, John, Webster, Alex, Weston, Joseph, Winkler, Georg W., Xu, Di, Yang, Chung Kai, Yucelen, Emrah, Zeisel, Roland, Zheng, Guoji, and Zilke, Justin
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Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
The fusion of non-Abelian anyons or topological defects is a fundamental operation in measurement-only topological quantum computation. In topological superconductors, this operation amounts to a determination of the shared fermion parity of Majorana zero modes. As a step towards this, we implement a single-shot interferometric measurement of fermion parity in indium arsenide-aluminum heterostructures with a gate-defined nanowire. The interferometer is formed by tunnel-coupling the proximitized nanowire to quantum dots. The nanowire causes a state-dependent shift of these quantum dots' quantum capacitance of up to 1 fF. Our quantum capacitance measurements show flux h/2e-periodic bimodality with a signal-to-noise ratio of 1 in 3.7 $\mu$s at optimal flux values. From the time traces of the quantum capacitance measurements, we extract a dwell time in the two associated states that is longer than 1 ms at in-plane magnetic fields of approximately 2 T. These results are consistent with a measurement of the fermion parity encoded in a pair of Majorana zero modes that are separated by approximately 3 $\mu$m and subjected to a low rate of poisoning by non-equilibrium quasiparticles. The large capacitance shift and long poisoning time enable a parity measurement error probability of 1%., Comment: Added data on a second measurement of device A and a measurement of device B, expanded discussion of a trivial scenario. Refs added, author list updated
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- 2024
15. Genome-wide analysis in over 1 million individuals of European ancestry yields improved polygenic risk scores for blood pressure traits.
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Keaton, Jacob, Kamali, Zoha, Xie, Tian, Vaez, Ahmad, Williams, Ariel, Goleva, Slavina, Ani, Alireza, Evangelou, Evangelos, Hellwege, Jacklyn, Yengo, Loic, Young, William, Traylor, Matthew, Giri, Ayush, Zheng, Zhili, Zeng, Jian, Chasman, Daniel, Morris, Andrew, Caulfield, Mark, Hwang, Shih-Jen, Kooner, Jaspal, Conen, David, Attia, John, Morrison, Alanna, Loos, Ruth, Kristiansson, Kati, Schmidt, Reinhold, Hicks, Andrew, Pramstaller, Peter, Nelson, Christopher, Samani, Nilesh, Risch, Lorenz, Gyllensten, Ulf, Melander, Olle, Riese, Harriette, Wilson, James, Campbell, Harry, Rich, Stephen, Psaty, Bruce, Lu, Yingchang, Guo, Xiuqing, Rice, Kenneth, Vollenweider, Peter, Sundström, Johan, Langenberg, Claudia, Tobin, Martin, Giedraitis, Vilmantas, Luan, Jianan, Tuomilehto, Jaakko, Kutalik, Zoltan, Ripatti, Samuli, Salomaa, Veikko, Girotto, Giorgia, Trompet, Stella, Jukema, J, van der Harst, Pim, Ridker, Paul, Giulianini, Franco, Vitart, Veronique, Goel, Anuj, Watkins, Hugh, Harris, Sarah, Deary, Ian, van der Most, Peter, Oldehinkel, Albertine, Keavney, Bernard, Hayward, Caroline, Campbell, Archie, Boehnke, Michael, Scott, Laura, Boutin, Thibaud, Mamasoula, Chrysovalanto, Järvelin, Marjo-Riitta, Peters, Annette, Gieger, Christian, Lakatta, Edward, Cucca, Francesco, Hui, Jennie, Knekt, Paul, Enroth, Stefan, De Borst, Martin, Polašek, Ozren, Concas, Maria, Catamo, Eulalia, Cocca, Massimiliano, Li-Gao, Ruifang, Hofer, Edith, Schmidt, Helena, Spedicati, Beatrice, Waldenberger, Melanie, Strachan, David, Laan, Maris, Teumer, Alexander, Dörr, Marcus, Gudnason, Vilmundur, Cook, James, Ruggiero, Daniela, Kolcic, Ivana, Boerwinkle, Eric, Traglia, Michela, and Lehtimäki, Terho
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Female ,Humans ,Male ,Blood Pressure ,Genetic Predisposition to Disease ,Genetic Risk Score ,Genome-Wide Association Study ,Hypertension ,Multifactorial Inheritance ,Polymorphism ,Single Nucleotide ,Risk Factors - Abstract
Hypertension affects more than one billion people worldwide. Here we identify 113 novel loci, reporting a total of 2,103 independent genetic signals (P
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- 2024
16. Clinical, functional, and opportunistic CT metrics of sarcopenia at the point of imaging care: analysis of all-cause mortality
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Yao, Lawrence, Petrosyan, Anahit, Chaudhari, Abhijit J, Lenchik, Leon, and Boutin, Robert D
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Biomedical and Clinical Sciences ,Clinical Sciences ,Prevention ,Serious Mental Illness ,Aging ,Biomedical Imaging ,Mental Health ,Clinical Research ,Good Health and Well Being ,Humans ,Aged ,Sarcopenia ,Positron Emission Tomography Computed Tomography ,Muscle ,Skeletal ,Tomography ,X-Ray Computed ,Frailty ,Muscle ,CT ,Opportunistic CT ,Screening ,Mortality ,Nuclear Medicine & Medical Imaging ,Clinical sciences - Abstract
PurposeThis study examines clinical, functional, and CT metrics of sarcopenia and all-cause mortality in older adults undergoing outpatient imaging.MethodsThe study included outpatients ≥ 65 years of age undergoing CT or PET/CT at a tertiary care institution. Assessments included screening questionnaires for sarcopenia (SARC-F) and frailty (FRAIL scale), and measurements of grip strength and usual gait speed (6 m course). Skeletal muscle area (SMA), index (SMI, area/height2) and density (SMD) were measured on CT at T12 and L3. A modified SMI was also examined (SMI-m, area/height). Mortality risk was studied with Cox proportional hazard analysis.ResultsThe study included 416 patients; mean age 73.8 years [sd 6.2]; mean follow-up 2.9 years (sd 1.34). Abnormal grip, SARC-F, and FRAIL scale assessments were associated with higher mortality risk (HR [95%CI] = 2.0 [1.4-2.9], 1.6 [1.1-2.3], 2.0 [1.4-2.8]). Adjusting for age, higher L3-SMA, T12-SMA, T12-SMI and T12-SMI-m were associated with lower mortality risk (HR [95%CI] = 0.80 [0.65-0.90], 0.76 [0.64-0.90], 0.84 [0.70-1.00], and 0.80 [0.67-0.90], respectively). T12-SMD and L3-SMD were not predictive of mortality. After adjusting for abnormal grip strength and FRAIL scale assessments, T12-SMA and T12-SMI-m remained predictive of mortality risk (HR [95%CI] = 0.83 [0.70-1.00] and 0.80 [0.67-0.97], respectively).ConclusionCT areal metrics were weaker predictors of all-cause mortality than clinical and functional metrics of sarcopenia in our older patient cohort; a CT density metric (SMD) was not predictive. Of areal CT metrics, SMI (area/height2) appeared to be less effective than non-normalized SMA or SMA normalized by height1.
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- 2024
17. Optimizing SUV Analysis: A Multicenter Study on Preclinical FDG-PET/CT Highlights the Impact of Standardization
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Kuntner, Claudia, Alcaide, Carlos, Anestis, Dimitris, Bankstahl, Jens P., Boutin, Herve, Brasse, David, Elvas, Filipe, Forster, Duncan, Rouchota, Maritina G., Tavares, Adriana, Teuter, Mari, Wanek, Thomas, Zachhuber, Lena, and Mannheim, Julia G.
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- 2024
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18. Systemic immune challenge exacerbates neurodegeneration in a model of neurological lysosomal disease
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Mandolfo, Oriana, Parker, Helen, Aguado, Èlia, Ishikawa Learmonth, Yuko, Liao, Ai Yin, O’Leary, Claire, Ellison, Stuart, Forte, Gabriella, Taylor, Jessica, Wood, Shaun, Searle, Rachel, Holley, Rebecca J, Boutin, Hervé, and Bigger, Brian W
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- 2024
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19. Clinical relevance of Staphylococcus saccharolyticus detection in human samples: a retrospective cohort study
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Michels, Ricarda, Papan, Cihan, Boutin, Sébastien, Alhussein, Farah, Becker, Sören L., Nurjadi, Dennis, and Last, Katharina
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- 2024
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20. X-chromosome and kidney function: evidence from a multi-trait genetic analysis of 908,697 individuals reveals sex-specific and sex-differential findings in genes regulated by androgen response elements.
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Scholz, Markus, Horn, Katrin, Pott, Janne, Wuttke, Matthias, Kühnapfel, Andreas, Nasr, M, Kirsten, Holger, Li, Yong, Hoppmann, Anselm, Gorski, Mathias, Ghasemi, Sahar, Li, Man, Tin, Adrienne, Chai, Jin-Fang, Cocca, Massimiliano, Wang, Judy, Nutile, Teresa, Akiyama, Masato, Åsvold, Bjørn, Bansal, Nisha, Biggs, Mary, Boutin, Thibaud, Brenner, Hermann, Brumpton, Ben, Burkhardt, Ralph, Cai, Jianwen, Campbell, Archie, Campbell, Harry, Chalmers, John, Chasman, Daniel, Chee, Miao, Chen, Xu, Cheng, Ching-Yu, Cifkova, Renata, Daviglus, Martha, Delgado, Graciela, Dittrich, Katalin, Edwards, Todd, Endlich, Karlhans, Michael Gaziano, J, Giri, Ayush, Giulianini, Franco, Gordon, Scott, Gudbjartsson, Daniel, Hallan, Stein, Hamet, Pavel, Hartman, Catharina, Hayward, Caroline, Heid, Iris, Hellwege, Jacklyn, Holleczek, Bernd, Holm, Hilma, Hutri-Kähönen, Nina, Hveem, Kristian, Isermann, Berend, Jonas, Jost, Joshi, Peter, Kamatani, Yoichiro, Kanai, Masahiro, Kastarinen, Mika, Khor, Chiea, Kiess, Wieland, Kleber, Marcus, Körner, Antje, Kovacs, Peter, Krajcoviechova, Alena, Kramer, Holly, Krämer, Bernhard, Kuokkanen, Mikko, Kähönen, Mika, Lange, Leslie, Lash, James, Lehtimäki, Terho, Li, Hengtong, Lin, Bridget, Liu, Jianjun, Loeffler, Markus, Lyytikäinen, Leo-Pekka, Magnusson, Patrik, Martin, Nicholas, Matsuda, Koichi, Milaneschi, Yuri, Mishra, Pashupati, Mononen, Nina, Montgomery, Grant, Mook-Kanamori, Dennis, Mychaleckyj, Josyf, März, Winfried, Nauck, Matthias, Nikus, Kjell, Nolte, Ilja, Noordam, Raymond, Okada, Yukinori, Olafsson, Isleifur, Oldehinkel, Albertine, Penninx, Brenda, Perola, Markus, Pirastu, Nicola, and Polasek, Ozren
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Humans ,Male ,Female ,Androgens ,Genome-Wide Association Study ,Kidney ,Chromosomes ,Human ,X ,Response Elements ,Polymorphism ,Single Nucleotide ,Genetic Predisposition to Disease ,Tetraspanins - Abstract
X-chromosomal genetic variants are understudied but can yield valuable insights into sexually dimorphic human traits and diseases. We performed a sex-stratified cross-ancestry X-chromosome-wide association meta-analysis of seven kidney-related traits (n = 908,697), identifying 23 loci genome-wide significantly associated with two of the traits: 7 for uric acid and 16 for estimated glomerular filtration rate (eGFR), including four novel eGFR loci containing the functionally plausible prioritized genes ACSL4, CLDN2, TSPAN6 and the female-specific DRP2. Further, we identified five novel sex-interactions, comprising male-specific effects at FAM9B and AR/EDA2R, and three sex-differential findings with larger genetic effect sizes in males at DCAF12L1 and MST4 and larger effect sizes in females at HPRT1. All prioritized genes in loci showing significant sex-interactions were located next to androgen response elements (ARE). Five ARE genes showed sex-differential expressions. This study contributes new insights into sex-dimorphisms of kidney traits along with new prioritized gene targets for further molecular research.
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- 2024
21. Correction: Vibrations and cultural heritage preservation: a new approach to protect objects
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Forma, Loïc, Boutin, Henri, Jossic, Marguerite, Le Conte, Sandie, and Wilkie-Chancellier, Nicolas
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- 2024
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22. Conception and Optimization of Extraction-Free Loop-Mediated Isothermal Amplification Detection of Dry Rot Fungus Serpula lacrymans
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Vanessa Lapointe, Myriam Roy, Stéphanie Rose, Yvan Boutin, and Frédéric Couture
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Chemistry ,QD1-999 - Published
- 2024
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23. Enhanced differentiation between 3‐hydroxyglutaric and 2‐hydroxyglutaric acids facilitates diagnostic testing for glutaric aciduria type 1
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Denis Cyr, Michel Boutin, Bruno Maranda, and Paula J. Waters
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2‐hydroxyglutaric acid ,3‐hydroxyglutaric acid ,gas chromatography–tandem mass spectrometry ,glutaric acid ,glutaric acidemia type 1 ,glutaric aciduria type 1 ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 ,Genetics ,QH426-470 - Abstract
Abstract Glutaric aciduria type 1 (GA1) is an inherited neurometabolic disorder, in which deficiency of glutaryl‐CoA dehydrogenase leads to accumulation of glutaric acid (GA) and 3‐hydroxyglutaric acid (3‐HG). Some low excretors may exhibit only slight elevation of urinary 3‐HG, with normal urinary GA, yet are at significant risk of severe clinical disease. Accurate quantitation of urinary 3‐HG is crucial in diagnostic workup for GA1, but in this context, current gas chromatography–mass spectrometry (GC–MS) methods have inherent analytical challenges. Co‐elution and spectral similarities of the 3‐HG and 2‐HG structural isomers can cause difficulties in quantitation of slightly elevated 3‐HG. Our laboratory recently acquired a gas chromatography system coupled to a triple quadrupole mass spectrometer (GC–MS/MS), and we took advantage of its increased sensitivity and specificity to improve our existing GC–MS method. A stable isotope dilution process is used, with sample treatment consisting of a double liquid–liquid extraction followed by a trimethylsilyl derivatization. The transitions m/z 349 → 333 for 3‐HG and m/z 349 → 321 for 2‐HG were selected to differentiate these two isobaric molecules based on their characteristic fragments, thus minimizing interferences despite co‐elution. Method validation demonstrated satisfactory precision and accuracy. Using GC–MS/MS instead of GC–MS allowed us to decrease the required specimen volume, number of sample processing steps, chromatographic run time, and instrument maintenance. This enhanced assay facilitates clinical laboratory testing for GA1, both in confirmatory protocols following positive newborn screening and in diagnostic investigation of patients with suggestive signs or symptoms.
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- 2024
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24. Age-associated alteration of innate defensive response to a looming stimulus and brain functional connectivity pattern in mice
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Célia Bak, Aroha Boutin, Sébastien Gauzin, Camille Lejards, Claire Rampon, and Cédrick Florian
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Medicine ,Science - Abstract
Abstract Innate defensive behaviors are essential for species survival. While these behaviors start to develop early in an individual’s life, there is still much to be understood about how they evolve with advancing age. Considering that aging is often accompanied by various cognitive and physical declines, we tested the hypothesis that innate fear behaviors and underlying cerebral mechanisms are modified by aging. In our study we investigated this hypothesis by examining how aged mice respond to a looming visual threat compared to their younger counterparts. Our findings indicate that aged mice exhibit a different fear response than young mice when facing this imminent threat. Specifically, unlike young mice, aged mice tend to predominantly display freezing behavior without seeking shelter. Interestingly, this altered behavioral response in aged mice is linked to a distinct pattern of functional brain connectivity compared to young mice. Notably, our data highlights a lack of a consistent brain activation following the fear response in aged mice, suggesting that innate defensive behaviors undergo changes with aging.
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- 2024
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25. Effectiveness of comprehensive geriatric assessment adapted to primary care when provided by a nurse or a general practitioner: the CEpiA cluster-randomised trial
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Veronique Orcel, Leon Banh, Sylvie Bastuji-Garin, Vincent Renard, Emmanuelle Boutin, Amel Gouja, Philippe Caillet, Elena Paillaud, Etienne Audureau, and Emilie Ferrat
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Geriatric assessment ,Primary care ,General practice ,Randomized controlled trials as topic ,Healthy aging ,Physician-nurse relations ,Medicine - Abstract
Abstract Background The benefits of comprehensive geriatric assessment (CGA) are well established for hospital care but less so for primary care. Our primary objective was to assess the effect of two multifaceted interventions based on a CGA adapted for primary care on a composite criterion combining all-cause mortality, emergency department visits, unplanned hospital admissions, and institutionalisation. Methods This open-label, pragmatic, three-arm, cluster-randomised controlled trial involved 39 general practices in France. It included 634 patients aged 70 years or over with chronic health conditions and/or an unplanned hospital admission in the past 3 months, between 05/2016 and 08/2018. Interventions were in arm 1: a systematic nurse-led CGA; arm 2: a GP-led CGA, at the GP’s discretion; arm 3: standard care. The primary composite endpoint was assessed at 12 months. The secondary endpoints included: components of the composite endpoint, health-related quality of life (Duke Health Profile), functional status (Katz Activities of Daily Living Index) and medications (number) at 12 months. Pairwise comparisons between the experimental groups and the control were tested. The main analysis was performed on the intention-to-treat (ITT) population, after imputing missing information and adjusting for baseline imbalances by mixed effects regressions. Results For the primary composite outcome, no statistically significant difference was found between arm 1 and the control (adjusted odds ratio [aOR] = 0.81 [95%CI 0.54–1.21], P = 0.31), whereas arm 2 and the control differed significantly (aOR = 0.60 [0.39–0.93], P = 0.022). A statistically lower risk of unplanned hospital admission in arm 2 vs control (aOR = 0.57 [0.36–0.92], P = 0.020)) was observed, while no statistically significant differences were found for the other components and between arm 1 and the control. None of the other secondary endpoints differed between arms. Conclusions Our study led in community-dwelling older patients with chronic conditions found no significant effect of a CGA adapted for primary care on mortality, functional independence and quality of life, but suggests that a GP-led CGA may reduce the risk of unplanned hospital admission. Our study demonstrates the feasibility of incorporating CGA into clinical practice and highlights its potential benefits when applied on a case-by-case basis, guided by the GPs who develop the resulting PCP. Trial registration NCT02664454.
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- 2024
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26. Sepsis-trained macrophages promote antitumoral tissue-resident T cells
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Broquet, Alexis, Gourain, Victor, Goronflot, Thomas, Le Mabecque, Virginie, Sinha, Debajyoti, Ashayeripanah, Mitra, Jacqueline, Cédric, Martin, Pierre, Davieau, Marion, Boutin, Lea, Poulain, Cecile, Martin, Florian P., Fourgeux, Cynthia, Petrier, Melanie, Cannevet, Manon, Leclercq, Thomas, Guillonneau, Maeva, Chaumette, Tanguy, Laurent, Thomas, Harly, Christelle, Scotet, Emmanuel, Legentil, Laurent, Ferrières, Vincent, Corgnac, Stephanie, Mami-Chouaib, Fathia, Mosnier, Jean Francois, Mauduit, Nicolas, McWilliam, Hamish E. G., Villadangos, Jose A., Gourraud, Pierre Antoine, Asehnoune, Karim, Poschmann, Jeremie, and Roquilly, Antoine
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- 2024
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27. Evolution, control and success of combination therapy with Ampicilin-sulbactam/Ceftazidime-Avibactam during a Carbapenem-Resistant Acinetobacter baumannii outbreak in burn Intensive Care Unit
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Dudoignon, Emmanuel, Caméléna, Francois, Lafaurie, Matthieu, Deniau, Benjamin, Chaussard, Maité, Coutrot, Maxime, Guillemet, Lucie, Cupaciu, Alexandru, Pharaboz, Alexandre, Boutin, Louis, Benyamina, Mourad, Chaouat, Marc, Mimoun, Maurice, Merimèche, Manel, Mebazaa, Alexandre, Plaud, Benoit, Berçot, Béatrice, Dépret, François, and Mellon, Guillaume
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- 2024
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28. Development of a machine learning model for deviation from trajectory detection in multi-pass TIG welding in a narrow gap
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Boutin, Theo, Bendaoud, Issam, Delmas, Josselin, Borel, Damien, and Bordreuil, Cyril
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- 2024
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29. MRI of patellar stabilizers: Anatomic visibility, inter-reader reliability, and intra-reader reproducibility of primary and secondary ligament anatomy
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Zandee van Rilland, Eddy D., Payne, Shelby R., Gorbachova, Tetyana, Shea, Kevin G., Sherman, Seth L., and Boutin, Robert D.
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- 2024
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30. Risk factors for severe and fatal childhood unintentional injury: a systematic review protocol
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Emilie Beaulieu, Norma Maria Perez Herrera, and Amélie Boutin
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Childhood injury ,Risk factors ,Injury prevention ,Injury determinants ,Medicine - Abstract
Abstract Background Unintentional injuries are a leading cause of death among children aged 1–19 years worldwide. Systematic reviews assessing various risk factors for different childhood injuries have been published previously. However, most of the related literature does not distinguish minor from severe or fatal injuries. This study aims to describe and summarize the current knowledge on the determinants of severe and fatal childhood unintentional injuries and to discuss the differences between risk factors for all injuries (including minor injuries) and severe and fatal injuries. The study also aims to quantify the reduction in childhood injuries associated with a reduction in exposure to some of the identified risk factors in the Canadian population. Methods A systematic review and meta-analysis will be conducted by searching MEDLINE, Embase, CINAHL, and Web of Science. Observational and experimental cohort studies assessing children and adolescents aged ≤ 19 years old and determinants of severe and fatal unintentional injury, such as personal behaviors, family and environmental characteristics, and socioeconomic and geographic context, will be eligible. The main outcome will be a composite of any severe or fatal unintentional injuries (including burns, drowning, transport-related injuries, and falls). Any severity measurement scale will be accepted as long as severe cases require at least one hospital admission. Two authors will independently screen for inclusion, extract data, and assess the quality of the data using the Cochrane ROBINS-E tool. Meta-analysis will be performed using random effects models. Subgroup analyses will examine age subgroups and high- vs low-income countries. Sensitivity analysis will be conducted after restricting analyses to studies with a low risk of bias. Attributable fractions will be computed to assess the burden of identified risk factors in the Canadian population. Discussion Given the numerous determinants of childhood injuries and the challenges that may be involved in identifying which individuals should be prioritized for injury prevention efforts, this evidence may help to inform the identification of high-risk children and prevention interventions, considering the disproportionate consequences of severe and fatal injuries. This evidence may also help pediatric healthcare providers prioritize counseling messaging. Systematic review registration PROSPERO CRD42023493322.
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- 2024
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31. Systemic immune challenge exacerbates neurodegeneration in a model of neurological lysosomal disease
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Oriana Mandolfo, Helen Parker, Èlia Aguado, Yuko Ishikawa Learmonth, Ai Yin Liao, Claire O’Leary, Stuart Ellison, Gabriella Forte, Jessica Taylor, Shaun Wood, Rachel Searle, Rebecca J Holley, Hervé Boutin, and Brian W Bigger
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Neurodegeneration ,Neuroinflammation ,Mucopolysaccharidosis ,Sanfilippo ,Inflammasome ,Medicine (General) ,R5-920 ,Genetics ,QH426-470 - Abstract
Abstract Mucopolysaccharidosis type IIIA (MPS IIIA) is a rare paediatric lysosomal storage disorder, caused by the progressive accumulation of heparan sulphate, resulting in neurocognitive decline and behavioural abnormalities. Anecdotal reports from paediatricians indicate a more severe neurodegeneration in MPS IIIA patients, following infection, suggesting inflammation as a potential driver of neuropathology. To test this hypothesis, we performed acute studies in which WT and MPS IIIA mice were challenged with the TLR3-dependent viral mimetic poly(I:C). The challenge with an acute high poly(I:C) dose exacerbated systemic and brain cytokine expression, especially IL-1β in the hippocampus. This was accompanied by an increase in caspase-1 activity within the brain of MPS IIIA mice with concomitant loss of hippocampal GFAP and NeuN expression. Similar levels of cell damage, together with exacerbation of gliosis, were also observed in MPS IIIA mice following low chronic poly(I:C) dosing. While further investigation is warranted to fully understand the extent of IL-1β involvement in MPS IIIA exacerbated neurodegeneration, our data robustly reinforces our previous findings, indicating IL-1β as a pivotal catalyst for neuropathological processes in MPS IIIA.
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- 2024
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32. Clinical, imaging and histopathological characterization of a series of three cats with cerebellar cortical degeneration
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Céline Giron, Pierre Hélie, Joane Parent, Mathieu Boutin, and Guillaume St-Jean
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Purkinje cells ,Cerebellar cortical degeneration ,Genetic ,MRI ,Inherited ,Veterinary medicine ,SF600-1100 - Abstract
Background Neurological inherited disorders are rare in domestic animals. Cerebellar cortical degeneration remains amongst the most common of these disorders. The condition is defined as the premature loss of fully differentiated cerebellar components due to genetic or metabolic defects. It has been studied in dogs and cats, and various genetic defects and diagnostic tests (including magnetic resonance imaging (MRI)) have been refined in these species. Cases in cats remain rare and mostly individual, and few diagnostic criteria, other than post-mortem exam, have been evaluated in reports with multiple cases. Here, we report three feline cases of cerebellar cortical degeneration with detailed clinical, diagnostic imaging and post-mortem findings. Case presentation The three cases were directly (siblings, case #1 and #2) or indirectly related (same farm, case #3) and showed early-onset of the disease, with clinical signs including cerebellar ataxia and tremors. Brain MRI was highly suggestive of cerebellar cortical degeneration on all three cases. The relative cerebrospinal fluid (CSF) space, relative cerebellum size, brainstem: cerebellum area ratio, and cerebellum: total brain area ratio, were measured and compared to a control group of cats and reference cut-offs for dogs in the literature. For the relative cerebellum size and cerebellum: total brain area ratio, all affected cases had a lower value than the control group. For the relative CSF space and brainstem: cerebellum area ratio, the more affected cases (#2 and #3) had higher values than the control group, while the least affected case (#3) had values within the ranges of the control group, but a progression was visible over time. Post-mortem examination confirmed the diagnosis of cerebellar cortical degeneration, with marked to complete loss of Purkinje cells and associated granular layer depletion and proliferation of Bergmann glia. One case also had Wallerian-like degeneration in the spinal cord, suggestive of spinocerebellar degeneration. Conclusion Our report further supports a potential genetic component for the disease in cats. For the MRI examination, the relative cerebellum size and cerebellum: total brain area ratio seem promising, but further studies are needed to establish specific feline cut-offs. Post-mortem evaluation of the cerebellum remains the gold standard for the final diagnosis.
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- 2024
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33. Publisher Correction: A genome-wide association analysis reveals new pathogenic pathways in gout
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Major, Tanya J., Takei, Riku, Matsuo, Hirotaka, Leask, Megan P., Sumpter, Nicholas A., Topless, Ruth K., Shirai, Yuya, Wang, Wei, Cadzow, Murray J., Phipps-Green, Amanda J., Li, Zhiqiang, Ji, Aichang, Merriman, Marilyn E., Morice, Emily, Kelley, Eric E., Wei, Wen-Hua, McCormick, Sally P. A., Bixley, Matthew J., Reynolds, Richard J., Saag, Kenneth G., Fadason, Tayaza, Golovina, Evgenia, O’Sullivan, Justin M., Stamp, Lisa K., Dalbeth, Nicola, Abhishek, Abhishek, Doherty, Michael, Roddy, Edward, Jacobsson, Lennart T. H., Kapetanovic, Meliha C., Melander, Olle, Andrés, Mariano, Pérez-Ruiz, Fernando, Torres, Rosa J., Radstake, Timothy, Jansen, Timothy L., Janssen, Matthijs, Joosten, Leo A. B., Liu, Ruiqi, Gaal, Orsolya I., Crişan, Tania O., Rednic, Simona, Kurreeman, Fina, Huizinga, Tom W. J., Toes, René, Lioté, Frédéric, Richette, Pascal, Bardin, Thomas, Ea, Hang Korng, Pascart, Tristan, McCarthy, Geraldine M., Helbert, Laura, Stibůrková, Blanka, Tausche, Anne-K., Uhlig, Till, Vitart, Véronique, Boutin, Thibaud S., Hayward, Caroline, Riches, Philip L., Ralston, Stuart H., Campbell, Archie, MacDonald, Thomas M., Nakayama, Akiyoshi, Takada, Tappei, Nakatochi, Masahiro, Shimizu, Seiko, Kawamura, Yusuke, Toyoda, Yu, Nakaoka, Hirofumi, Yamamoto, Ken, Matsuo, Keitaro, Shinomiya, Nariyoshi, Ichida, Kimiyoshi, Lee, Chaeyoung, Bradbury, Linda A., Brown, Matthew A., Robinson, Philip C., Buchanan, Russell R. C., Hill, Catherine L., Lester, Susan, Smith, Malcolm D., Rischmueller, Maureen, Choi, Hyon K., Stahl, Eli A., Miner, Jeff N., Solomon, Daniel H., Cui, Jing, Giacomini, Kathleen M., Brackman, Deanna J., Jorgenson, Eric M., Liu, Hongbo, Susztak, Katalin, Shringarpure, Suyash, So, Alexander, Okada, Yukinori, Li, Changgui, Shi, Yongyong, and Merriman, Tony R.
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- 2024
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34. Author Correction: Sepsis-trained macrophages promote antitumoral tissue-resident T cells
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Broquet, Alexis, Gourain, Victor, Goronflot, Thomas, Le Mabecque, Virginie, Sinha, Debajyoti, Ashayeripanah, Mitra, Jacqueline, Cédric, Martin, Pierre, Davieau, Marion, Boutin, Lea, Poulain, Cecile, Martin, Florian P., Fourgeux, Cynthia, Petrier, Melanie, Cannevet, Manon, Leclercq, Thomas, Guillonneau, Maeva, Chaumette, Tanguy, Laurent, Thomas, Harly, Christelle, Scotet, Emmanuel, Legentil, Laurent, Ferrières, Vincent, Corgnac, Stephanie, Mami-Chouaib, Fathia, Mosnier, Jean Francois, Mauduit, Nicolas, McWilliam, Hamish E. G., Villadangos, Jose A., Gourraud, Pierre Antoine, Asehnoune, Karim, Poschmann, Jeremie, and Roquilly, Antoine
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- 2024
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35. Spatiotemporal patterns and surveillance artifacts in maternal mortality in the United States: a population-based studyResearch in context
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K.S. Joseph, Sarka Lisonkova, Amélie Boutin, Giulia M. Muraca, Neda Razaz, Sid John, Yasser Sabr, Sophie Simon, Johanna Kögl, Elizabeth A. Suarez, Wee-Shian Chan, Azar Mehrabadi, Justin S. Brandt, Enrique F. Schisterman, and Cande V. Ananth
- Subjects
Maternal mortality ,United States ,Cause of death ,Epidemiology ,Surveillance ,Pregnancy complications ,Public aspects of medicine ,RA1-1270 - Abstract
Summary: Background: Reports of high and rising maternal mortality ratios (MMR) in the United States have caused serious concern. We examined spatiotemporal patterns in cause-specific MMRs, in order to obtain insights into the cause for the increase. Methods: The study included all maternal deaths recorded by the Centers for Disease Control and Prevention from 1999 to 2021. Changes in overall and cause-specific MMRs were quantified nationally; in low-vs high-MMR states (i.e., MMRs
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- 2024
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36. Heterogeneity of colistin resistance mechanism in clonal populations of carbapenem-resistant Klebsiella pneumoniae in Vietnam
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Bui Tien Sy, Sébastien Boutin, Le Thi Kieu Linh, Simone Weikert-Asbeck, Elias Eger, Susanne Hauswaldt, Truong Nhat My, Nguyen Trong The, Jan Rupp, Le Huu Song, Katharina Schaufler, Thirumalaisamy P. Velavan, and Dennis Nurjadi
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Public aspects of medicine ,RA1-1270 - Published
- 2024
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37. Identification of State Markers in Anorexia Nervosa: Replication and Extension of Inflammation-Associated Biomarkers Using Multiplex Profiling
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Lauren Breithaupt, Laura M. Holsen, Chunni Ji, Jie Hu, Felicia Petterway, Megan Rosa-Caldwell, Ida A.K. Nilsson, Jennifer J. Thomas, Kyle A. Williams, Regine Boutin, Meghan Slattery, Cynthia M. Bulik, Steven E. Arnold, Elizabeth A. Lawson, Madhusmita Misra, and Kamryn T. Eddy
- Subjects
Anorexia nervosa ,Biomarkers ,BMI ,Eating disorders ,Inflammation markers ,Targeted proteomics ,Psychiatry ,RC435-571 - Abstract
Background: Proteomics offers potential for detecting and monitoring anorexia nervosa (AN) and its variant, atypical AN (atyp-AN). However, research has been limited by small protein panels, a focus on adult AN, and lack of replication. Methods: In this study, we performed Olink multiplex profiling of 92 inflammation-related proteins in females with AN/atyp-AN (n = 64), all of whom were ≤90% of expected body weight, and age-matched healthy control individuals (n = 44). Results: Five proteins differed significantly between the primary AN/atyp-AN group and the healthy control group (lower levels: HGF, IL-18R1, TRANCE; higher levels: CCL23, LIF-R). The expression levels of 3 proteins (lower IL-18R1, TRANCE; higher LIF-R) were uniquely disrupted in participants with AN in our primary model. No unique expression levels emerged for atyp-AN. In the total sample, 12 proteins (ADA, CD5, CD6, CXCL1, FGF-21, HGF, IL-12B, IL18, IL-18R1, SIRT2, TNFSF14, TRANCE) were positively correlated with body mass index and 5 proteins (CCL11, FGF-19, IL8, LIF-R, OPG) were negatively correlated with body mass index in our primary models. Conclusions: Our results replicate the results of a previous study that demonstrated a dysregulated inflammatory status in AN and extend those results to atyp-AN. Of the 17 proteins correlated with body mass index, 11 were replicated from a previous study that used similar methods, highlighting the promise of inflammatory protein expression levels as biomarkers of AN disease monitoring. Our findings underscore the complexity of AN and atyp-AN by highlighting the inability of the identified proteins to differentiate between these 2 subtypes, thereby emphasizing the heterogeneous nature of these disorders.
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- 2024
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38. Prospects of industrial membrane concentrates: treatment of landfill leachates by coupling reverse osmosis and wet air oxidation
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Gout, Emilie, Monnot, Mathias, Boutin, Olivier, Vanloot, Pierre, and Moulin, Philippe
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- 2024
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39. Inferring condition in wild mammals: body condition indices confer no benefit over measuring body mass across ecological contexts
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Wishart, Andrea E., Guerrero-Chacón, Adriana L., Smith, Rebecca, Hawkshaw, Deborah M., McAdam, Andrew G., Dantzer, Ben, Boutin, Stan, and Lane, Jeffrey E.
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- 2024
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40. The role of CD146 in renal disease: from experimental nephropathy to clinics
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Boutin, Louis, Roger, Elena, Gayat, Etienne, Depret, François, Blot-Chabaud, Marcel, and Chadjichristos, Christos E.
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- 2024
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41. The specific NQO2 inhibitor, S29434, only marginally improves the survival of dopamine neurons in MPTP-intoxicated mice
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Vallucci, Maeva, Boutin, Jean A., Janda, Elzbieta, Blandel, Florence, Musgrove, Ruth, Di Monte, Donato, Ferry, Gilles, Michel, Patrick P., and Hirsch, Etienne C.
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- 2024
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42. Data-driven surrogate modeling of high-resolution sea-ice thickness in the Arctic
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C. Durand, T. S. Finn, A. Farchi, M. Bocquet, G. Boutin, and E. Ólason
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
A novel generation of sea-ice models with elasto-brittle rheologies, such as neXtSIM, can represent sea-ice processes with an unprecedented accuracy at the mesoscale for resolutions of around 10 km. As these models are computationally expensive, we introduce supervised deep learning techniques for surrogate modeling of the sea-ice thickness from neXtSIM simulations. We adapt a convolutional U-Net architecture to an Arctic-wide setup by taking the land–sea mask with partial convolutions into account. Trained to emulate the sea-ice thickness at a lead time of 12 h, the neural network can be iteratively applied to predictions for up to 1 year. The improvements of the surrogate model over a persistence forecast persist from 12 h to roughly 1 year, with improvements of up to 50 % in the forecast error. Moreover, the predictability gain for the sea-ice thickness measured against the daily climatology extends to over 6 months. By using atmospheric forcings as additional input, the surrogate model can represent advective and thermodynamical processes which influence the sea-ice thickness and the growth and melting therein. While iterating, the surrogate model experiences diffusive processes which result in a loss of fine-scale structures. However, this smoothing increases the coherence of large-scale features and thereby the stability of the model. Therefore, based on these results, we see huge potential for surrogate modeling of state-of-the-art sea-ice models with neural networks.
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- 2024
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43. Datascape: exploring heterogeneous dataspace
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Jakez Rolland, Ronan Boutin, Damien Eveillard, and Benoit Delahaye
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Medicine ,Science - Abstract
Abstract Data science is a powerful field for gaining insights, comparing, and predicting behaviors from datasets. However, the diversity of methods and hypotheses needed to abstract a dataset exhibits a lack of genericity. Moreover, the shape of a dataset, which structures its contained information and uncertainties, is rarely considered. Inspired by state-of-the-art manifold learning and hull estimations algorithms, we propose a novel framework, the datascape, that leverages topology and graph theory to abstract heterogeneous datasets. Built upon the combination of a nearest neighbor graph, a set of convex hulls, and a metric distance that respects the shape of the data, the datascape allows exploration of the dataset’s underlying space. We show that the datascape can uncover underlying functions from simulated datasets, build predictive algorithms with performance close to state-of-the-art algorithms, and reveal insightful geodesic paths between points. It demonstrates versatility through ecological, medical, and simulated data use cases.
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- 2024
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44. Genomic epidemiology of Streptococcus pyogenes from pharyngeal and skin swabs in Gabon
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Sébastien Boutin, Benjamin Arnold, Abraham Sunday Alabi, Sabine Bélard, Nicole Toepfner, and Dennis Nurjadi
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group A streptococcus ,Streptococcus pyogenes ,Africa ,molecular epidemiology ,whole-genome sequencing ,Microbiology ,QR1-502 - Abstract
ABSTRACT The disease burden of Streptococcus pyogenes is particularly high in low- and middle-income countries. However, data on the molecular epidemiology of S. pyogenes in such regions, especially sub-Saharan Africa, are scarce. To address this, whole-genome sequencing (WGS) of S. pyogenes from Gabon was performed to identify transmission clusters and provide valuable genomic data for public repositories. A total of 76 S. pyogenes isolates from 73 patients, collected between September 2012 and January 2013, were characterized by short-read whole-genome sequencing. The predominant emm types were emm58.0, emm81.2 and emm223.0 with 9.2% (7 of 76), 7.9% (6 of 76), and 6.6% (5 of 76), respectively. Single-nucleotide polymorphism analysis revealed 16 putative transmission clusters. Four of these were household transmissions. Four antimicrobial genes (lmrP, tetM, tetL, and thfT) were found in the S. pyogenes isolates from this study. All strains carried lmrP. Of the 76 isolates, 64 (84.2%) carried at least one tetracycline resistance gene (tetM or tetL). Comparisons with other publicly available African genomic data revealed a significant correlation between geographical location and genetic diversity of S. pyogenes, with Gabonese strains showing similarities to those from Kenya and certain Oceanian regions. Our study showed that transmission of S. pyogenes can occur at the community/household level and that high-resolution molecular typing is needed to monitor changes in circulating clones and to detect community outbreaks. Advocacy for the adoption of WGS for comprehensive molecular characterization of S. pyogenes and data sharing through public repositories should be encouraged to understand the molecular epidemiology and evolutionary trajectory of S. pyogenes in sub-Saharan Africa.IMPORTANCEThe study conducted in Gabon underscores the critical importance of addressing the limited knowledge of the molecular epidemiology of Streptococcus pyogenes in low- and middle-income countries, particularly sub-Saharan Africa. Our molecular analysis identified predominant emm types and unveiled 16 putative transmission clusters, four involving household transmissions. Furthermore, the study revealed a correlation between geographical location and genetic diversity, emphasizing the necessity for a comprehensive understanding of the molecular epidemiology and evolutionary trajectory of S. pyogenes in various regions. The call for advocacy in adopting whole-genome sequencing for molecular characterization and data sharing through public repositories is crucial for advancing our knowledge and implementing effective strategies to combat the spread of S. pyogenes in sub-Saharan Africa.
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- 2024
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45. Cyclic dynamics drive summer movement ecology of snowshoe hares (Lepus americanus)
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Hannah A. Miller, Jenilee Gobin, Melanie R. Boudreau, Liam G. Horne, Lee E. Scholl, Jacob L. Seguin, Samuel Sonnega, Charles J. Krebs, Rudy Boonstra, Alice J. Kenney, Thomas S. Jung, Stan Boutin, and Dennis L. Murray
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breeding season ,home range ,movement ecology ,behavior ,predation risk ,boreal forest ,Evolution ,QH359-425 ,Ecology ,QH540-549.5 - Abstract
Animals exhibit dynamic movement and activity in response to environmental variation including changes in reproductive opportunities, predation risk, or food availability. Yet, it remains unclear which factors are primary in affecting animal movement, and whether the relative importance of these factors are consistent through time. We tracked snowshoe hares (Lepus americanus) using GPS telemetry during eight summers spanning a hare population cycle (2015–2022) in southwestern Yukon, Canada, to determine associations between environmental variation and hare movement and home range size. Hare density varied 25-fold during the study and home range size increased markedly during low hare density, especially for males. Both sexes retained similar core space use and linearity of movements, but at low densities males had greater and more variable movement rates and time spent travelling. Trail cameras revealed that annual changes in hare movement were also correlated with relative abundance of lynx (Lynx canadensis) and coyotes (Canis latrans). However, hare detection rates within a season were not closely associated with seasonal variation in predator detection. Observed differences between male and female hares in some metrics highlighted that different life histories and reproductive behavior are likely the main drivers of hare movement dynamics. Therefore, fitness rewards associated with successful mate search and reproduction appear to outweigh risks associated with increased movement, even in highly variable environments where costs of prioritizing reproduction-related activities are notably high and variable.
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- 2024
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46. Influence of non-pharmaceutical interventions during the COVID-19 pandemic on respiratory viral infections – a prospective population-based cohort study
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Nadja Käding, Frederike Waldeck, Bjarne Meier, Sébastien Boutin, Max Borsche, Alexander Balck, Bandik Föh, Jan Kramer, Christine Klein, Alexander Katalinic, and Jan Rupp
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non-pharmaceutical interventions ,respiratory viruses ,infection risk ,virus distribution ,behavioral factors ,Public aspects of medicine ,RA1-1270 - Abstract
Non-pharmaceutical interventions (NPI) have been proven successful in a population-based approach to protect from SARS-CoV-2 transmission during the COVID-19 pandemic. As a consequential-effect, a reduction in the spread of all respiratory viruses has been observed, but the primary factors behind this phenomenon have yet to be identified. We conducted a subgroup analysis of participants from the ELISA study, a prospective longitudinal cohort study on SARS-CoV-2 transmission, at four timepoints from November 2020 – September 2022. The aim was to provide a detailed overview of the circulation of respiratory viruses over 2 years and to identify potential personal risk factors of virus distribution. All participants were screened using qPCR for respiratory viral infections from nasopharyngeal swabs and answered a questionnaire regarding behavioral factors. Several categories of risk factors for the transmission of respiratory viruses were evaluated using a scoring system. In total, 1,124 participants were included in the study, showing high adherence to governmental-introduced NPI. The overall number of respiratory virus infections was low (0–4.9% of participants), with adenovirus (1.7%), rhino−/enterovirus (3.2%) and SARS-CoV-2 (1.2%) being the most abundant. We detected an inverse correlation between the number and intensity of NPI and the number of detected respiratory viruses. More precisely, the attendance of social events and household size was associated with rhino−/enterovirus infection while social contacts were associated with being positive for any virus. NPI introduced during the COVID-19 pandemic reduced the occurrence of seasonal respiratory viruses in our study, showing different risk-factors for enhanced transmission between viruses.Trial registrationDRKS.de, German Clinical Trials Register (DRKS), Identifier: DRKS00023418, Registered on 28 October 2020.
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- 2024
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47. Web-Based, Human-Guided, or Computer-Guided Transdiagnostic Cognitive Behavioral Therapy in University Students With Anxiety and Depression: Randomized Controlled Trial
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Jurrijn Koelen, Anke Klein, Nine Wolters, Eline Bol, Lisa De Koning, Samantha Roetink, Jorien Van Blom, Bruno Boutin, Jessica Schaaf, Raoul Grasman, Claudia Maria Van der Heijde, Elske Salemink, Heleen Riper, Eirini Karyotaki, Pim Cuijpers, Silvia Schneider, Ronald Rapee, Peter Vonk, and Reinout Wiers
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Psychology ,BF1-990 - Abstract
BackgroundInternet-based cognitive behavioral interventions (iCBTs) are efficacious treatments for depression and anxiety. However, it is unknown whether adding human guidance is feasible and beneficial within a large educational setting. ObjectiveThis study aims to potentially demonstrate the superiority of 2 variants of a transdiagnostic iCBT program (human-guided and computer-guided iCBT) over care as usual (CAU) in a large sample of university students and the superiority of human-guided iCBT over computer-guided iCBT. MethodsA total of 801 students with elevated levels of anxiety, depression, or both from a large university in the Netherlands were recruited as participants and randomized to 1 of 3 conditions: human-guided iCBT, computer-guided iCBT, and CAU. The primary outcome measures were depression (Patient Health Questionnaire) and anxiety (Generalized Anxiety Disorder scale). Secondary outcomes included substance use–related problems (Alcohol Use Disorder Identification Test and Drug Abuse Screening Test—10 items). Linear mixed models were used to estimate the effects of time, treatment group, and their interactions (slopes). The primary research question was whether the 3 conditions differed in improvement over 3 time points (baseline, midtreatment, and after treatment) in terms of depression and anxiety symptoms. Results were analyzed according to the intention-to-treat principle using multiple imputation. Patients were followed exploratively from baseline to 6 and 12 months. ResultsIn both short-term and long-term analyses, the slopes for the 3 conditions did not differ significantly in terms of depression and anxiety, although both web-based interventions were marginally more efficacious than CAU over 6 months (P values between .02 and .03). All groups showed significant improvement over time (P
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- 2024
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48. COVID-19 profiles in general practice: a latent class analysis
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Étienne Audureau, Emilie Ferrat, Sylvie Bastuji-Garin, Emmanuelle Boutin, Tan-Trung Phan, William Mirat, Sophie Brossier, Jean-Denis Hoonakker, and Emilie Maroto
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Medicine - Abstract
Background General practitioners (GPs) were on the front line of the COVID-19 outbreak. Identifying clinical profiles in COVID-19 might improve patient care and enable closer monitoring of at-risk profiles.Objectives To identify COVID-19 profiles in a population of adult primary care patients, and to determine whether the profiles were associated with negative outcomes and persistent symptoms.Design, setting and participants In a prospective multicentre study, 44 GPs from multiprofessional primary care practices in the Paris area of France recruited 340 consecutive adult patients (median age: 47 years) with a confirmed diagnosis of COVID-19 during the first two waves of the epidemic.Method and outcome A latent class (LC) analysis with 11 indicators (clinical signs and symptoms) was performed. The resulting profiles were characterised by a 3-month composite outcome (COVID-19-related hospital admission and/or death) and persistent symptoms three and 6 months after inclusion.Results We identified six profiles: ‘paucisymptomatic’ (LC1, 9%), ‘anosmia and/or ageusia’ (LC2, 12.9%), ‘influenza-like syndrome with anosmia and ageusia’ (LC3, 15.5%), ‘influenza-like syndrome without anosmia or ageusia’ (LC4, 24.5%), ‘influenza-like syndrome with respiratory impairment’ (LC5) and a ‘complete form’ (LC6, 17.7%). At 3 months, 7.4% of the patients were hospitalised (with higher rates in LC5), and 18% had persistent symptoms (with higher rates in LC5 and LC6). At 6 months, 6.4% of the patients had persistent symptoms, with no differences between LCs.Conclusion Our findings might help GPs to identify patients at risk of persistent COVID-19 symptoms and hospital admission and then set up procedures for closer monitoring.
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- 2024
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49. Multi-trait analysis characterizes the genetics of thyroid function and identifies causal associations with clinical implications
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Rosalie B. T. M. Sterenborg, Inga Steinbrenner, Yong Li, Melissa N. Bujnis, Tatsuhiko Naito, Eirini Marouli, Tessel E. Galesloot, Oladapo Babajide, Laura Andreasen, Arne Astrup, Bjørn Olav Åsvold, Stefania Bandinelli, Marian Beekman, John P. Beilby, Jette Bork-Jensen, Thibaud Boutin, Jennifer A. Brody, Suzanne J. Brown, Ben Brumpton, Purdey J. Campbell, Anne R. Cappola, Graziano Ceresini, Layal Chaker, Daniel I. Chasman, Maria Pina Concas, Rodrigo Coutinho de Almeida, Simone M. Cross, Francesco Cucca, Ian J. Deary, Alisa Devedzic Kjaergaard, Justin B. Echouffo Tcheugui, Christina Ellervik, Johan G. Eriksson, Luigi Ferrucci, Jan Freudenberg, GHS DiscovEHR, Regeneron Genetics Center, Christian Fuchsberger, Christian Gieger, Franco Giulianini, Martin Gögele, Sarah E. Graham, Niels Grarup, Ivana Gunjača, Torben Hansen, Barbara N. Harding, Sarah E. Harris, Stig Haunsø, Caroline Hayward, Jennie Hui, Till Ittermann, J. Wouter Jukema, Eero Kajantie, Jørgen K. Kanters, Line L. Kårhus, Lambertus A. L. M. Kiemeney, Margreet Kloppenburg, Brigitte Kühnel, Jari Lahti, Claudia Langenberg, Bruno Lapauw, Graham Leese, Shuo Li, David C. M. Liewald, Allan Linneberg, Jesus V. T. Lominchar, Jian’an Luan, Nicholas G. Martin, Antonela Matana, Marcel E. Meima, Thomas Meitinger, Ingrid Meulenbelt, Braxton D. Mitchell, Line T. Møllehave, Samia Mora, Silvia Naitza, Matthias Nauck, Romana T. Netea-Maier, Raymond Noordam, Casia Nursyifa, Yukinori Okada, Stefano Onano, Areti Papadopoulou, Colin N. A. Palmer, Cristian Pattaro, Oluf Pedersen, Annette Peters, Maik Pietzner, Ozren Polašek, Peter P. Pramstaller, Bruce M. Psaty, Ante Punda, Debashree Ray, Paul Redmond, J. Brent Richards, Paul M. Ridker, Tom C. Russ, Kathleen A. Ryan, Morten Salling Olesen, Ulla T. Schultheiss, Elizabeth Selvin, Moneeza K. Siddiqui, Carlo Sidore, P. Eline Slagboom, Thorkild I. A. Sørensen, Enrique Soto-Pedre, Tim D. Spector, Beatrice Spedicati, Sundararajan Srinivasan, John M. Starr, David J. Stott, Toshiko Tanaka, Vesela Torlak, Stella Trompet, Johanna Tuhkanen, André G. Uitterlinden, Erik B. van den Akker, Tibbert van den Eynde, Melanie M. van der Klauw, Diana van Heemst, Charlotte Verroken, W. Edward Visser, Dina Vojinovic, Henry Völzke, Melanie Waldenberger, John P. Walsh, Nicholas J. Wareham, Stefan Weiss, Cristen J. Willer, Scott G. Wilson, Bruce H. R. Wolffenbuttel, Hanneke J. C. M. Wouters, Margaret J. Wright, Qiong Yang, Tatijana Zemunik, Wei Zhou, Gu Zhu, Sebastian Zöllner, Johannes W. A. Smit, Robin P. Peeters, Anna Köttgen, Alexander Teumer, and Marco Medici
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Science - Abstract
Abstract To date only a fraction of the genetic footprint of thyroid function has been clarified. We report a genome-wide association study meta-analysis of thyroid function in up to 271,040 individuals of European ancestry, including reference range thyrotropin (TSH), free thyroxine (FT4), free and total triiodothyronine (T3), proxies for metabolism (T3/FT4 ratio) as well as dichotomized high and low TSH levels. We revealed 259 independent significant associations for TSH (61% novel), 85 for FT4 (67% novel), and 62 novel signals for the T3 related traits. The loci explained 14.1%, 6.0%, 9.5% and 1.1% of the total variation in TSH, FT4, total T3 and free T3 concentrations, respectively. Genetic correlations indicate that TSH associated loci reflect the thyroid function determined by free T3, whereas the FT4 associations represent the thyroid hormone metabolism. Polygenic risk score and Mendelian randomization analyses showed the effects of genetically determined variation in thyroid function on various clinical outcomes, including cardiovascular risk factors and diseases, autoimmune diseases, and cancer. In conclusion, our results improve the understanding of thyroid hormone physiology and highlight the pleiotropic effects of thyroid function on various diseases.
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- 2024
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50. X-chromosome and kidney function: evidence from a multi-trait genetic analysis of 908,697 individuals reveals sex-specific and sex-differential findings in genes regulated by androgen response elements
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Markus Scholz, Katrin Horn, Janne Pott, Matthias Wuttke, Andreas Kühnapfel, M. Kamal Nasr, Holger Kirsten, Yong Li, Anselm Hoppmann, Mathias Gorski, Sahar Ghasemi, Man Li, Adrienne Tin, Jin-Fang Chai, Massimiliano Cocca, Judy Wang, Teresa Nutile, Masato Akiyama, Bjørn Olav Åsvold, Nisha Bansal, Mary L. Biggs, Thibaud Boutin, Hermann Brenner, Ben Brumpton, Ralph Burkhardt, Jianwen Cai, Archie Campbell, Harry Campbell, John Chalmers, Daniel I. Chasman, Miao Ling Chee, Miao Li Chee, Xu Chen, Ching-Yu Cheng, Renata Cifkova, Martha Daviglus, Graciela Delgado, Katalin Dittrich, Todd L. Edwards, Karlhans Endlich, J. Michael Gaziano, Ayush Giri, Franco Giulianini, Scott D. Gordon, Daniel F. Gudbjartsson, Stein Hallan, Pavel Hamet, Catharina A. Hartman, Caroline Hayward, Iris M. Heid, Jacklyn N. Hellwege, Bernd Holleczek, Hilma Holm, Nina Hutri-Kähönen, Kristian Hveem, Berend Isermann, Jost B. Jonas, Peter K. Joshi, Yoichiro Kamatani, Masahiro Kanai, Mika Kastarinen, Chiea Chuen Khor, Wieland Kiess, Marcus E. Kleber, Antje Körner, Peter Kovacs, Alena Krajcoviechova, Holly Kramer, Bernhard K. Krämer, Mikko Kuokkanen, Mika Kähönen, Leslie A. Lange, James P. Lash, Terho Lehtimäki, Hengtong Li, Bridget M. Lin, Jianjun Liu, Markus Loeffler, Leo-Pekka Lyytikäinen, Patrik K. E. Magnusson, Nicholas G. Martin, Koichi Matsuda, Yuri Milaneschi, Pashupati P. Mishra, Nina Mononen, Grant W. Montgomery, Dennis O. Mook-Kanamori, Josyf C. Mychaleckyj, Winfried März, Matthias Nauck, Kjell Nikus, Ilja M. Nolte, Raymond Noordam, Yukinori Okada, Isleifur Olafsson, Albertine J. Oldehinkel, Brenda W. J. H. Penninx, Markus Perola, Nicola Pirastu, Ozren Polasek, David J. Porteous, Tanja Poulain, Bruce M. Psaty, Ton J. Rabelink, Laura M. Raffield, Olli T. Raitakari, Humaira Rasheed, Dermot F. Reilly, Kenneth M. Rice, Anne Richmond, Paul M. Ridker, Jerome I. Rotter, Igor Rudan, Charumathi Sabanayagam, Veikko Salomaa, Neil Schneiderman, Ben Schöttker, Mario Sims, Harold Snieder, Klaus J. Stark, Kari Stefansson, Hannah Stocker, Michael Stumvoll, Patrick Sulem, Gardar Sveinbjornsson, Per O. Svensson, E-Shyong Tai, Kent D. Taylor, Bamidele O. Tayo, Andrej Teren, Yih-Chung Tham, Joachim Thiery, Chris H. L. Thio, Laurent F. Thomas, Johanne Tremblay, Anke Tönjes, Peter J. van der Most, Veronique Vitart, Uwe Völker, Ya Xing Wang, Chaolong Wang, Wen Bin Wei, John B. Whitfield, Sarah H. Wild, James F. Wilson, Thomas W. Winkler, Tien-Yin Wong, Mark Woodward, Xueling Sim, Audrey Y. Chu, Mary F. Feitosa, Unnur Thorsteinsdottir, Adriana M. Hung, Alexander Teumer, Nora Franceschini, Afshin Parsa, Anna Köttgen, Pascal Schlosser, and Cristian Pattaro
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Science - Abstract
Abstract X-chromosomal genetic variants are understudied but can yield valuable insights into sexually dimorphic human traits and diseases. We performed a sex-stratified cross-ancestry X-chromosome-wide association meta-analysis of seven kidney-related traits (n = 908,697), identifying 23 loci genome-wide significantly associated with two of the traits: 7 for uric acid and 16 for estimated glomerular filtration rate (eGFR), including four novel eGFR loci containing the functionally plausible prioritized genes ACSL4, CLDN2, TSPAN6 and the female-specific DRP2. Further, we identified five novel sex-interactions, comprising male-specific effects at FAM9B and AR/EDA2R, and three sex-differential findings with larger genetic effect sizes in males at DCAF12L1 and MST4 and larger effect sizes in females at HPRT1. All prioritized genes in loci showing significant sex-interactions were located next to androgen response elements (ARE). Five ARE genes showed sex-differential expressions. This study contributes new insights into sex-dimorphisms of kidney traits along with new prioritized gene targets for further molecular research.
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- 2024
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