3,052 results on '"Lane, John"'
Search Results
2. Non-contrast MRI of micro-vascularity of the feet and toes
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Bae, Won C, Malis, Vadim, Vucevic, Diana, Yamamoto, Asako, Nakamura, Katsumi, Lane, John, and Miyazaki, Mitsue
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Biomedical and Clinical Sciences ,Clinical Sciences ,Clinical Research ,Biomedical Imaging ,4.2 Evaluation of markers and technologies ,Detection ,screening and diagnosis ,Cardiovascular ,Humans ,Male ,Middle Aged ,Female ,Adult ,Aged ,Foot ,Toes ,Peripheral Arterial Disease ,Magnetic Resonance Imaging ,Raynaud Disease ,Foot and toe ,Peripheral artery disease ,Diabetes ,Blood flow perfusion ,Arterial spin labeling ,Clinical sciences - Abstract
PurposeThis study aimed to develop novel non-contrast MR perfusion techniques for assessing micro-vascularity of the foot in human subjects.MethodsAll experiments were performed on a clinical 3 T scanner using arterial spin labeling (ASL). Seven healthy subjects (30-72 years old, 5 males and 2 females) were enrolled and bilateral feet were imaged with tag-on and tag-off alternating inversion recovery spin labeling for determining micro-vascularity. We compared an ASL technique with 1-tag against 4-tag pulses. For perfusion, we determined signal increase ratio (SIR) at varying inversion times (TI) from 0.5 to 2 s. SIR versus TI data were fit to determine perfusion metrics of peak height (PH), time to peak (TTP), full width at half maximum (FWHM), area under the curve (AUC), and apparent blood flow (aBF) in the distal foot and individual toes. Using analysis of variance (ANOVA), effects of tag pulse and region of interest (ROI) on the mean perfusion metrics were assessed. In addition, a 4-tag pulse perfusion experiment was performed on patients with peripheral artery disease (PAD) and Raynaud's disease.ResultsUsing our MR perfusion techniques, SIR versus TI data showed well-defined leading and trailing edges, with a peak near TI of 0.75-1.0 s and subsiding quickly to near zero by TI of 2 s, particularly when 4-tag pulses were used. When imaged with 4-tag pulse, we found significantly greater values in perfusion metrics, as compared to 1-tag pulse. The patients with PAD and Raynaud's disease showed a reduced or scattered perfusion curves compared to the healthy control.ConclusionMR perfusion imaging of the distal foot shows greater SIR and perfusion metrics with the 4-tag pulse compared to the 1-tag pulse technique. This will likely benefit those with low perfusion due to aging, PAD, diabetic foot, and other vascular diseases.
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- 2024
3. Scatology
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Lane, John
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- 2014
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4. Lunar Cold Trap Contamination by Landing Vehicles
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Shipley, Scott T., Lane, John E., and Metzger, Philip T.
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics ,Physics - Fluid Dynamics ,Physics - Space Physics - Abstract
Tools have been developed to model and simulate the effects of lunar landing vehicles on the lunar environment, mostly addressing the effects of regolith erosion by rocket plumes and the fate of the ejected lunar soil particles. The KSC Granular Mechanics and Regolith Operations Lab tools have now been expanded to address volatile contamination of the lunar surface (Stern, 1999). Landing nearby such a crater will result in the migration of significant exhaust plume gas into the cold trap of the crater, and will also create an unnatural atmosphere over the volatile reservoirs that are to be studied. Our calculations address: 1) the time for the plume-induced local atmosphere above cold traps to decay to normal levels, 2) the efficiency of gas migration into a permanently shadowed crater when the landing is outside it but nearby, and 3) reduction on contamination afforded by moving the landing site further from the crater or by topographically shielding the crater from the direct flux of a lander's ground jet. We also address plume volatiles adsorbed onto and driven inside soil ejecta particles from their residence in the high pressure stagnation region of the engine exhaust plume, and how their mechanical dispersal across the lunar surface contributes to the induced atmosphere. One additional question is whether the collection of soil ejecta along the base of a topographic feature will produce a measurable plume volatile release distinct from the background. We mostly address item 2). Item 3) is obvious from our results excepting that the removal distances may be large, but changes to landing strategy can improve the situation., Comment: 13 pages, 18 figures. Presented at Earth & Space 2014 conference
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- 2023
5. Further Analysis on the Mystery of the Surveyor III Dust Deposits
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Lane, John, Trigwell, Steven, Hintze, Paul, and Metzger, Philip
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics ,Condensed Matter - Soft Condensed Matter ,Physics - Fluid Dynamics ,Physics - Space Physics - Abstract
The Apollo 12 lunar module (LM) landing near the Surveyor III spacecraft at the end of 1969 has remained the primary experimental verification of the predicted physics of plume ejecta effects from a rocket engine interacting with the surface of the moon. This was made possible by the return of the Surveyor III camera housing by the Apollo 12 astronauts, allowing detailed analysis of the composition of dust deposited by the LM plume. It was soon realized after the initial analysis of the camera housing that the LM plume tended to remove more dust than it had deposited. In the present study, coupons from the camera housing have been reexamined. In addition, plume effects recorded in landing videos from each Apollo mission have been studied for possible clues. Several likely scenarios are proposed to explain the Surveyor III dust observations. These include electrostatic levitation of the dust from the surface of the Moon as a result of periodic passing of the day-night terminator; dust blown by the Apollo 12 LM flyby while on its descent trajectory; dust ejected from the lunar surface due to gas forced into the soil by the Surveyor III rocket nozzle, based on Darcy's law; and mechanical movement of dust during the Surveyor landing. Even though an absolute answer may not be possible based on available data and theory, various computational models are employed to estimate the feasibility of each of these proposed mechanisms. Scenarios are then discussed which combine multiple mechanisms to produce results consistent with observations., Comment: 10 pages, 10 figures. Presented at Earth & Space 2012 conference
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- 2023
6. A Single Institution Case Series of Total Endovascular Relining for Type 3 Endoleaks in Traditional EVAR Grafts with Raised Bifurcations
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Patel, Rohini J, Sibona, Agustin, Malas, Mahmoud B, Al-Nouri, Omar, Lane, John S, and Barleben, Andrew R
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Biomedical and Clinical Sciences ,Cardiovascular Medicine and Haematology ,Clinical Sciences ,Bioengineering ,Cardiovascular ,Assistive Technology ,Good Health and Well Being ,EVAR ,Endoleak ,Endovascular ,Technique ,Cardiovascular System & Hematology ,Cardiovascular medicine and haematology ,Clinical sciences ,Dentistry - Abstract
BackgroundThe endovascular repair of infrarenal abdominal aortic aneurysms (AAA) can be performed with a wide variety of devices. Many of these grafts elevate the aortic bifurcation which can limit future repairs if the graft material fails thereby creating a type III endoleak to aorto-uniliac (AUI) grafts. Many manufacturers have grafts susceptible to this, but we have seen this in the Medtronic AneuRx graft. Our goal is to provide technical details and outcomes regarding a novel technique to re-line these grafts while maintaining inline flow to the iliac arteries.MethodsThis was a single institution review of patients who had endoleaks requiring intervention after a previously placed graft with an elevated aortic bifurcation. Primary outcomes included technical success defined as placement of all planned devices, resolution of type III endoleak, aneurysm size at follow-up, and requirement of reintervention. Secondary outcomes included 30-day complications, aneurysm-related mortality (ARM), and all-cause mortality (ACM). Technical details of the operation include back table deployment of an Ovation device, modification of the deployment system tether and preemptive placement of an up and over 0.014" wire. The wire is placed up and over and hung outside the contralateral gate. Once the main body is introduced above the old graft, the 0.014" is snared from the contralateral side and externalized. The main body is then able to be seated at the bifurcation as the limb is not fully deployed and then device deployment is completed per IFU.ResultsOur study consists of four individuals, three of which had an AAA initially managed with an AneuRx EVAR and one with a combination of Gore and Cook grafts. All four patients were male with an average age of 84.5 years at time of re-line. All patients had at least 10 years between initial surgery and re-line at our institution. Primary outcomes revealed no type 1 or 3 endoleaks at follow-up, technical success was 100% and one patient required reintervention for aneurysm growth and type 2 endoleak. In terms of our secondary outcomes, there was one postoperative complication which was cardiac dysfunction secondary to demand ischemia, ARM was 0% and ACM was 25% at average follow up of 2.44 years.ConclusionAs individuals continue to age, there are more patients who would benefit from less invasive reinterventions following EVAR. Whether this is due to aortic degeneration, stent migration, or stent material damage is not always known. In this study we present an endovascular approach to treating type III endoleak patients with a previous graft and elevated aortic bifurcation using Ovation stent grafts and found no evidence of type 1 or 3 endoleaks on follow-up imaging. This approach may allow patients with type III endoleak the option of a minimally invasive, percutaneous approach where they previously would not have had one.
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- 2023
7. Coachwhip
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Lane, John
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- 2012
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8. Photon Counting Versus Energy-integrated Detector CT in Detection of Superior Semicircular Canal Dehiscence
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Doyle, Nathan S., Benson, John C., Carr, Carrie M., Diehn, Felix E., Carlson, Matthew L., Leng, Shuai, and Lane, John I.
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- 2024
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9. Lagrangian Trajectory Modeling of Lunar Dust Particles
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Lane, John E., Metzger, Philip T., Immer, Christopher D., and Li, Xiaoyi
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics ,Physics - Fluid Dynamics ,Physics - Space Physics - Abstract
A mathematical model and software implementation developed to predict trajectories of single lunar dust particles acted on by a high velocity gas flow is discussed. The model uses output from a computation fluid dynamics (CFD) or direct simulation Monte Carlo (DSMC) simulation of a rocket nozzle hot gas jet. The gas density, velocity vector field, and temperature predicted by the CFD/DSMC simulations, provide the data necessary to compute the forces and accelerations acting on a single particle of regolith. All calculations of trajectory assume that the duration of particle flight is much shorter than the change in gas properties, i.e., the particle trajectory calculations take into account the spatial variation of the gas jet, but not the temporal variation. This is a reasonable first-order assumption. Final results are compared to photogrammetry derived estimates of dust angles form Apollo landing videos., Comment: 9 pages, 9 figures. Presented at Earth & Space 2008 conference
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- 2023
10. Sardis
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Lane, John
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- 2011
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11. Medicine Wheel
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Lane, John
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- 2010
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12. Upper Extremity Access Has Worse Outcomes in F/BEVAR using the VQI Dataset
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Patel, Rohini J, Sibona, Agustin, Malas, Mahmoud B, Lane, John S, Al-Nouri, Omar, and Barleben, Andrew R
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Stroke ,Clinical Research ,Clinical Sciences ,Cardiovascular System & Hematology ,Cardiovascular medicine and haematology ,Clinical sciences ,Dentistry - Abstract
ObjectivePhysician modified endografts (PMEG) and custom manufactured devices (CMD) use branched and fenestrated techniques (F/BEVAR) to repair complex aneurysms. Traditionally many of these are deployed through a combination of upper and lower extremity access. However, with newer steerable sheaths, you can now simulate upper extremity access from a transfemoral approach. Single institution studies have demonstrated increased risks of access site complications and stroke when upper extremity access is used. This study compares outcomes after F/BEVAR in a national database between total transfemoral (TTF) access and mixed upper extremity (UEM) access.MethodsThis study is an analysis of the Vascular Quality Initiate for all patients who underwent F/BEVAR from 2014-2021. Patients were stratified based on a TTF delivery of all devices versus any UEM access for deployment of target vessel stents. Primary outcomes included stroke, myocardial infarction and perioperative death. Secondary outcomes included access site hematoma, occlusion, or embolization, operative time, fluoroscopy time, and technical success. Multivariable linear and logistic regression analyses were performed.Results3146 patients underwent a F/BEVAR; 2309 (73.4%) TTF and 837 (26.6%) UEM. Logistic regression analysis indicated a two-fold increased risk of death and MI and a three-fold increased risk of stroke in the UEM group. Furthermore, there is decreased operative time (221 versus 297 minutes, p
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- 2023
13. Screening initial entry training trainees for postural faults and low back or hip pain
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Lane, John R., Maj
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MEDICAL RESEARCH ,ARMY - United States - Training ,WOUNDS AND INJURIES - Abstract
tab chart bibliog
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- 2014
14. Use of surgical augmented intelligence maps can reduce radiation and improve safety in the endovascular treatment of complex aortic aneurysms
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Patel, Rohini J, Lee, Arielle M, Hallsten, John, Lane, John S, Barleben, Andrew R, and Malas, Mahmoud B
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Pediatric Research Initiative ,Clinical Research ,Patient Safety ,Cardiovascular ,Humans ,Aortic Aneurysm ,Abdominal ,Blood Vessel Prosthesis ,Blood Vessel Prosthesis Implantation ,Treatment Outcome ,Endovascular Procedures ,Aortic Aneurysm ,Retrospective Studies ,Postoperative Complications ,Aortic aneurysm ,Artificial intelligence ,Radiation ,Medical and Health Sciences ,Cardiovascular System & Hematology - Abstract
ObjectiveThe introduction of endovascular procedures has revolutionized the management of complex aortic aneurysms. Although repair has traditionally required longer operative times and increased radiation exposure compared with simple endovascular aneurysm repair, the recent introduction of three-dimensional technology has become an invaluable operative adjunct. Surgical augmented intelligence (AI) is a rapidly evolving tool initiated at our institution in June 2019. In our study, we sought to determine whether this technology improved patient and operator safety.MethodsA retrospective review of patients who had undergone endovascular repair of complex aortic aneurysms (pararenal, juxtarenal, or thoracoabdominal), type B dissection, or infrarenal (endoleak, coil placement, or renal angiography with or without intervention) at a tertiary care center from August 2015 to November 2021 was performed. Patients were stratified according to the findings from intelligent maps, which are patient-specific AI tools used in the operating room in conjunction with real-time fluoroscopic images. The primary outcomes included operative time, radiation exposure, fluoroscopy time, and contrast use. The secondary outcomes included 30-day postoperative complications and long-term follow-up. Linear regression models were used to evaluate the association between AI use and the main outcomes.ResultsDuring the 6-year period, 116 patients were included in the present study, with no significant differences in the baseline characteristics. Of the 116 patients, 76 (65.5%) had undergone procedures using AI and 40 (34.5%) had undergone procedures without AI software. The intraoperative outcomes revealed a significant decrease in radiation exposure (AI group, 1955 mGy; vs non-AI group, 3755 mGy; P = .004), a significant decrease in the fluoroscopy time (AI group, 55.6 minutes; vs non-AI group, 86.9 minutes; P = .007), a decrease in the operative time (AI group, 255 minutes; vs non-AI group, 284 minutes; P = .294), and a significant decrease in contrast use (AI group, 123 mL; vs non-AI group, 199 mL; P
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- 2023
15. Transcriptional time course after rotator cuff repair in 6 month old female rabbits
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Vasquez-Bolanos, Laura S, Gibbons, Michael C, Ruoss, Severin, Wu, Isabella T, Esparza, Mary C, Fithian, Donald C, Lane, John G, Singh, Anshuman, Nasamran, Chanond A, Fisch, Kathleen M, and Ward, Samuel R
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Biological Sciences ,Bioinformatics and Computational Biology ,Genetics ,Musculoskeletal ,rotator cuff repair ,transcriptome analysis ,time series data ,rotator cuff muscle dysfunction ,muscle biology ,muscle atrophy ,Physiology ,Medical Physiology ,Psychology ,Biochemistry and cell biology ,Medical physiology - Abstract
Introduction: Rotator cuff tears are prevalent in the population above the age of 60. The disease progression leads to muscle atrophy, fibrosis, and fatty infiltration, which is not improved upon with surgical repair, highlighting the need to better understand the underlying biology impairing more favorable outcomes. Methods: In this study, we collected supraspinatus muscle tissue from 6 month old female rabbits who had undergone unilateral tenotomy for 8 weeks at 1, 2, 4, or 8 weeks post-repair (n = 4/group). RNA sequencing and enrichment analyses were performed to identify a transcriptional timeline of rotator cuff muscle adaptations and related morphological sequelae. Results: There were differentially expressed (DE) genes at 1 (819 up/210 down), 2 (776/120), and 4 (63/27) weeks post-repair, with none at 8 week post-repair. Of the time points with DE genes, there were 1092 unique DE genes and 442 shared genes, highlighting that there are changing processes in the muscle at each time point. Broadly, 1-week post-repair differentially expressed genes were significantly enriched in pathways of metabolism and energetic activity, binding, and regulation. Many were also significantly enriched at 2 weeks, with the addition of NIF/NF-kappaB signaling, transcription in response to hypoxia, and mRNA stability alongside many additional pathways. There was also a shift in transcriptional activity at 4 weeks post-repair with significantly enriched pathways for lipids, hormones, apoptosis, and cytokine activity, despite an overall decrease in the number of differentially expressed genes. At 8 weeks post-repair there were no DE genes when compared to control. These transcriptional profiles were correlated with the histological findings of increased fat, degeneration, and fibrosis. Specifically, correlated gene sets were enriched for fatty acid metabolism, TGF-B-related, and other pathways. Discussion: This study identifies the timeline of transcriptional changes in muscle after RC repair, which by itself, does not induce a growth/regenerative response as desired. Instead, it is predominately related to metabolism/energetics changes at 1 week post-repair, unclear or asynchronous transcriptional diversity at 2 weeks post-repair, increased adipogenesis at 4 weeks post-repair, and a low transcriptional steady state or a dysregulated stress response at 8 weeks post-repair.
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- 2023
16. A Single Center Review of a Total Transfemoral Approach to Upper Extremity Access in Branched and Fenestrated Physician Modified Endografts.
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Barleben, Andrew, Mathlouthi, Asma, Al-Nouri, Omar, Lane, John, Malas, Mahmoud, and Patel, Rohini
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Humans ,Blood Vessel Prosthesis ,Blood Vessel Prosthesis Implantation ,Endovascular Procedures ,Prosthesis Design ,Retrospective Studies ,Treatment Outcome ,Risk Factors ,Postoperative Complications ,Time Factors ,Aortic Aneurysm ,Thoracic ,Upper Extremity ,Physicians - Abstract
BACKGROUND: Aortic aneurysms are normally treated by an endovascular approach. Due to the lack of devices and increasing experience, there is a growing number of complex aneurysms undergoing repair by physician modified endografts (PMEGs). Previously, our practice was to target visceral vessels exclusively through upper extremity access. We have since then shifted to an all transfemoral approach when possible. This study aims to show the operative benefits of transfemoral only approaches. METHODS: Patients who underwent a PMEG at a tertiary center between 2015 and 2020 were included. Patients were stratified into 2 groups based on branched vessel approach-transfemoral only versus axillary or composite (axillary and femoral). Forty-one patients had a pararenal or type IV thoracoabdominal aortic aneurysm (TAAA) and 15 patients had more complex TAAA. Primary outcomes were operative time, radiation exposure, fluoroscopy time, contrast, and blood loss. Secondary outcomes were 30-day mortality and major adverse events. Linear regression models were used to evaluate the association between approach type and the main outcomes. RESULTS: Fifty-six patients were included with 48% (n = 27) in the transfemoral group and 52% (n = 29) in the axillary/composite group. Baseline characteristics were similar between the groups. Intraoperative outcomes revealed significant increase in the average operative time (418 vs. 246 min, P
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- 2022
17. Investigation of the weekend effect on perioperative complications and mortality after carotid revascularization
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Ramachandran, Mokhshan, Hamouda, Mohammed, Cui, Christina L., Moghaddam, Marjan, Zarrintan, Sina, Lane, John S., and Malas, Mahmoud B.
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- 2024
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18. Absent Stapedial Tendon: Imaging Features of an Underrecognized Entity: Clinical Neuroradiology
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Burkett, Brian J., Oien, Michael P., Benson, John C., Nassiri, Ashley M., Carlson, Matthew L., and Lane, John I.
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- 2023
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19. Quality of Life in Patients With Chronic Limb-Threatening Ischemia Treated With Revascularization
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Menard, Matthew T., Farber, Alik, Powell, Richard J., Rosenfield, Kenneth, Conte, Michael S., Hamza, Taye H., Kaufman, John A., Cziraky, Mark J., Creager, Mark A., Dake, Michael D., Jaff, Michael R., Reid, Diane, Sopko, George, White, Christopher J., Strong, Michael B., van Over, Max, Chisci, Emiliano, Goodney, Philip P., Gray, Bruce, Kayssi, Ahmed, Siracuse, Jeffrey J., Choudhry, Niteesh K., Maurao, Mick, Muluk, Satish, Belkin, Michael, Lyden, Sean, Shishehbor, Mehdi, Bajakian, Danielle, Duwayri, Yazan, Bowens, Nina, Nypaver, Timothy, Mukherjee, Dipankar, Obrand, Daniel, LaMuraglia, Glenn, Kalra, Manju, Bernardo, Nelson, Barshes, Neal, Lipsitz, Evan, Jenkins, J. Stephen, Gasper, Warren, Owens, Christopher, Pomposelli, Frank, Rogers, Kevin, Vouyouka, Ageliki, Passman, Marc, Pena, Constantino, Ramaiah, Venkatesh, Hoch, John, Bersin, Robert, Hayes, Greg, Ho, Karen, Shah, Aamir, Lum, Ying Wie, Darling, R. Clement, III, Aalami, Oliver, Zhou, Wei, Patel, Parag, Aziz, Abdulhameed, Halloran, Brian, Jung, Enjae, Mitchell, Erica, Turba, Ulku Cenk, Choi, Eric, Hiramoto, Jade, Owens, Christopher, Milner, Ross, Crawford, Robert, Ucuzian, Areck, Henke, Peter, Chaer, Rabih, Lahiri (Adams), Julie, Gelabert, Hugh, Safian, Robert, Mena-Hurtado, Carlos, Ihnat, Daniel, Rowe, Vincent, Kashyap, Vikram, Shaw, Palma, Korngold, Ethan, Lindsay, Thomas, Winkelaar, Gerrit, Mell, Matthew, DuVal, Bruce, Aziz, Faisal, Reed, Amy, Nazzal, Munier, Schanzer, Andres, Hamdan, Allen, Smeds, Matthew, Kalish, Jeffrey, Slaiby, Jeffrey, Androes, Mark, Hanover, Tod, Motaganahalli, Raghu, Chang, Catherine, Hye, Robert, Alexander, Jason, Ansel, Gary, Bohannon, Todd, Desai, Sapan, Hodgson, Kim, Hood, Douglas, Guzman, Randolph Pl, Giles, Kristina, Shah, Samir, Hawkins, Beau, Brothers, Thomas Edward, Azizzadeh, Ali, Charlton-Ouw, Kristofer, Khan, Sophia, Brooke, Benjamin S., Kabutey, Nii-Kabu, Sachar, Ravish, Dosluoglu, Hasan, Berman, Scott, Blebea, John, Taubman, Kevin, Douville, Yvan, Cox, Mitchell W., Davis, Joseph, Caps, Michael, Schneider, Peter, Abou-Zamzam, Ahmed, Feldman, Robert, von Mering, Gregory, Tan, Tze-Woei, Virk, Chiranjiv S., Zhang, Wayne, Bacharach, Michael, Seidman, Craig, Iafrati, Mark, Findeiss, Laura, Bailey, Charles, Shames, Murray, Lane, John, Baril, Donald, Hass, Stephen, Stone, Patrick, Sharma, Aditya, Tracci, Margaret, Mackenzie, Kent, Stoner, Michael, Starr, Jean, McAllister, David, Singh, Niten, Tsai, Shirling, Kinlay, Scott, Macsata, Robyn, Neville, Richard, Rundback, John, McGinigle, Kate, Vallabhaneni, Raghu, Espinoza, Andrey, Azarbal, Amir, Longo, G. Matthew, Kovach, Richard, Soukas, Peter, Metzger, Chris, Artis, Andre, Bachinsky, William, Armstrong, Ehrin, Hattler, Brack, Chandra, Venita, Schor, Jonathan, Bianchi, Christian, Kiang, Sharon, Ben-Arie, Eyal, Verta, Michael, Wilkinson, Julia, Hurie, Justin, Kopriva, David, Molnar, Robert, Chun, Linda Jun, Azene, Ezana, Davis, Clark, Blazick, Elizabeth, Henao, Steve, Proffitt, Trent, Herman, Christine, Nathan, Derek, Chang, Robert, Lane, John, Mureebe, Leila, Chen, Jerry, Semel, Marcus, Fecteau, Scott, Mehta, Manish, Nagpal, Sudhir, Shammas, Nicolas, Kujath, Scott, Beasley, Robert, Vogel, Todd, Hedayati, Nasim, Brooks, James, Nelson, Peter, Parrack, Inkyong, Bernik, Thomas, Dexter, David, Brown, Kellie, Huang, Joe, Wu, Timothy, Hacker, Robert, Garland, Brandon Tyler, Griffin, Joseph, Laskowski, Igor, Pfau, Steven, Duncan, Audra, Trachtenberg, Jeffrey, Gordon, Ian, Tan, Tze-Woei, Aulivola, Bernadette, Zayed, Mohamed, Venermo, Maarit, Hill, Andrew, Wickremesekera, Janaka Kesara, Ketteler, Erika, Michelagnoli, Stefano, Bannazadeh, Mohsen, Sikalas, Nicholas, Khashram, Manar, Vasudevan, Thodur, Simmons, Justin, Osborne, Nicholas, Fox, Charles, and Vallabhaneni, Raghuveer
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- 2024
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20. Teacher Evaluation Policy Enactment: Understanding the Relationship among Principal Characteristics, Teacher Perspectives, and Institutional Environments
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Lane, John L.
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Based extensive fieldwork and interviews, this study explains teacher evaluation policy enactment as shaped by three conditions: (1) a principal's backgrounds, role perceptions, knowledge of instruction, and interactions with teachers; (2) teachers' perspectives; and (3) environmental demands. Notably, principals may lack the backgrounds, knowledge of teaching, role perceptions, and established interactional routines to engage teachers about their instruction in evaluative contexts. Furthermore, the teachers' press to earn high evaluation scores may inhibit instructional leadership, as teachers become focused on the accountability aspects of evaluation rather than on the affordances of evaluation reforms to help them improve.
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- 2023
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21. Evaluation of Patellofemoral Knee Pain
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Sciarretta, Fabio Valerio, Lane, John G., Lane, John G., editor, Gobbi, Alberto, editor, Espregueira-Mendes, João, editor, Kaleka, Camila Cohen, editor, and Adachi, Nobuo, editor
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- 2023
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22. Evaluation of Malalignment of the Knee
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Dallo, Ignacio, Lane, John G., Marin, Silvio Villascusa, Gobbi, Alberto, Lane, John G., editor, Gobbi, Alberto, editor, Espregueira-Mendes, João, editor, Kaleka, Camila Cohen, editor, and Adachi, Nobuo, editor
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- 2023
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23. Anatomy of the Knee
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Sciarretta, Fabio Valerio, Lane, John G., Lane, John G., editor, Gobbi, Alberto, editor, Espregueira-Mendes, João, editor, Kaleka, Camila Cohen, editor, and Adachi, Nobuo, editor
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- 2023
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24. Evaluation of the Stability and Function of the Glenohumeral Joint
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Hall, Gregory W., Kasch, Anthony, Lane, John G., Singh, Anshuman, Lane, John G., editor, Gobbi, Alberto, editor, Espregueira-Mendes, João, editor, Kaleka, Camila Cohen, editor, and Adachi, Nobuo, editor
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- 2023
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25. Shoulder Anatomy
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Taniguchi, Kevin, Lane, John G., Singh, Anshuman, Lane, John G., editor, Gobbi, Alberto, editor, Espregueira-Mendes, João, editor, Kaleka, Camila Cohen, editor, and Adachi, Nobuo, editor
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- 2023
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26. Electronic properties and optical spectra of donor–acceptor conjugated organic polymers
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Sarap, Chandra Shekar, Singh, Yashpal, Lane, John Michael, and Rai, Neeraj
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- 2023
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27. Mendelian randomization supports bidirectional causality between telomere length and clonal hematopoiesis of indeterminate potential
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Nakao, Tetsushi, Bick, Alexander G, Taub, Margaret A, Zekavat, Seyedeh M, Uddin, Md M, Niroula, Abhishek, Carty, Cara L, Lane, John, Honigberg, Michael C, Weinstock, Joshua S, Pampana, Akhil, Gibson, Christopher J, Griffin, Gabriel K, Clarke, Shoa L, Bhattacharya, Romit, Assimes, Themistocles L, Emery, Leslie S, Stilp, Adrienne M, Wong, Quenna, Broome, Jai, Laurie, Cecelia A, Khan, Alyna T, Smith, Albert V, Blackwell, Thomas W, Codd, Veryan, Nelson, Christopher P, Yoneda, Zachary T, Peralta, Juan M, Bowden, Donald W, Irvin, Marguerite R, Boorgula, Meher, Zhao, Wei, Yanek, Lisa R, Wiggins, Kerri L, Hixson, James E, Gu, C Charles, Peloso, Gina M, Roden, Dan M, Reupena, Muagututi’a S, Hwu, Chii-Min, DeMeo, Dawn L, North, Kari E, Kelly, Shannon, Musani, Solomon K, Bis, Joshua C, Lloyd-Jones, Donald M, Johnsen, Jill M, Preuss, Michael, Tracy, Russell P, Peyser, Patricia A, Qiao, Dandi, Desai, Pinkal, Curran, Joanne E, Freedman, Barry I, Tiwari, Hemant K, Chavan, Sameer, Smith, Jennifer A, Smith, Nicholas L, Kelly, Tanika N, Hidalgo, Bertha, Cupples, L Adrienne, Weeks, Daniel E, Hawley, Nicola L, Minster, Ryan L, Deka, Ranjan, Naseri, Take T, de las Fuentes, Lisa, Raffield, Laura M, Morrison, Alanna C, Vries, Paul S, Ballantyne, Christie M, Kenny, Eimear E, Rich, Stephen S, Whitsel, Eric A, Cho, Michael H, Shoemaker, M Benjamin, Pace, Betty S, Blangero, John, Palmer, Nicholette D, Mitchell, Braxton D, Shuldiner, Alan R, Barnes, Kathleen C, Redline, Susan, Kardia, Sharon LR, Abecasis, Gonçalo R, Becker, Lewis C, Heckbert, Susan R, He, Jiang, Post, Wendy, Arnett, Donna K, Vasan, Ramachandran S, Darbar, Dawood, Weiss, Scott T, McGarvey, Stephen T, de Andrade, Mariza, Chen, Yii-Der Ida, Kaplan, Robert C, Meyers, Deborah A, Custer, Brian S, and Correa, Adolfo
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Cardiovascular ,Genetics ,Aging ,Heart Disease ,Heart Disease - Coronary Heart Disease ,Human Genome ,Atherosclerosis ,Aetiology ,2.1 Biological and endogenous factors ,Good Health and Well Being ,Samoan Obesity ,Lifestyle and Genetic Adaptations Study (OLaGA) Group ,NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium - Abstract
Human genetic studies support an inverse causal relationship between leukocyte telomere length (LTL) and coronary artery disease (CAD), but directionally mixed effects for LTL and diverse malignancies. Clonal hematopoiesis of indeterminate potential (CHIP), characterized by expansion of hematopoietic cells bearing leukemogenic mutations, predisposes both hematologic malignancy and CAD. TERT (which encodes telomerase reverse transcriptase) is the most significantly associated germline locus for CHIP in genome-wide association studies. Here, we investigated the relationship between CHIP, LTL, and CAD in the Trans-Omics for Precision Medicine (TOPMed) program (n = 63,302) and UK Biobank (n = 47,080). Bidirectional Mendelian randomization studies were consistent with longer genetically imputed LTL increasing propensity to develop CHIP, but CHIP then, in turn, hastens to shorten measured LTL (mLTL). We also demonstrated evidence of modest mediation between CHIP and CAD by mLTL. Our data promote an understanding of potential causal relationships across CHIP and LTL toward prevention of CAD.
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- 2022
28. Third window lesions of the inner ear: A pictorial review
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Khandalavala, Karl R., Dornhoffer, James R., Farnsworth, Paul J., Staricha, Kelly L., Benson, John C., Lane, John I., and Carlson, Matthew L.
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- 2024
- Full Text
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29. Whole genome sequencing identifies structural variants contributing to hematologic traits in the NHLBI TOPMed program
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Wheeler, Marsha M, Stilp, Adrienne M, Rao, Shuquan, Halldórsson, Bjarni V, Beyter, Doruk, Wen, Jia, Mihkaylova, Anna V, McHugh, Caitlin P, Lane, John, Jiang, Min-Zhi, Raffield, Laura M, Jun, Goo, Sedlazeck, Fritz J, Metcalf, Ginger, Yao, Yao, Bis, Joshua B, Chami, Nathalie, de Vries, Paul S, Desai, Pinkal, Floyd, James S, Gao, Yan, Kammers, Kai, Kim, Wonji, Moon, Jee-Young, Ratan, Aakrosh, Yanek, Lisa R, Almasy, Laura, Becker, Lewis C, Blangero, John, Cho, Michael H, Curran, Joanne E, Fornage, Myriam, Kaplan, Robert C, Lewis, Joshua P, Loos, Ruth JF, Mitchell, Braxton D, Morrison, Alanna C, Preuss, Michael, Psaty, Bruce M, Rich, Stephen S, Rotter, Jerome I, Tang, Hua, Tracy, Russell P, Boerwinkle, Eric, Abecasis, Goncalo R, Blackwell, Thomas W, Smith, Albert V, Johnson, Andrew D, Mathias, Rasika A, Nickerson, Deborah A, Conomos, Matthew P, Li, Yun, Þorsteinsdóttir, Unnur, Magnússon, Magnús K, Stefansson, Kari, Pankratz, Nathan D, Bauer, Daniel E, Auer, Paul L, and Reiner, Alex P
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Epidemiology ,Biological Sciences ,Health Sciences ,Genetics ,Hematology ,Human Genome ,Aetiology ,2.1 Biological and endogenous factors ,Cardiovascular ,Good Health and Well Being ,Humans ,Genome-Wide Association Study ,Whole Genome Sequencing ,Blood Cells - Abstract
Genome-wide association studies have identified thousands of single nucleotide variants and small indels that contribute to variation in hematologic traits. While structural variants are known to cause rare blood or hematopoietic disorders, the genome-wide contribution of structural variants to quantitative blood cell trait variation is unknown. Here we utilized whole genome sequencing data in ancestrally diverse participants of the NHLBI Trans Omics for Precision Medicine program (N = 50,675) to detect structural variants associated with hematologic traits. Using single variant tests, we assessed the association of common and rare structural variants with red cell-, white cell-, and platelet-related quantitative traits and observed 21 independent signals (12 common and 9 rare) reaching genome-wide significance. The majority of these associations (N = 18) replicated in independent datasets. In genome-editing experiments, we provide evidence that a deletion associated with lower monocyte counts leads to disruption of an S1PR3 monocyte enhancer and decreased S1PR3 expression.
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- 2022
30. Genetic determinants of telomere length from 109,122 ancestrally diverse whole-genome sequences in TOPMed
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Taub, Margaret A, Conomos, Matthew P, Keener, Rebecca, Iyer, Kruthika R, Weinstock, Joshua S, Yanek, Lisa R, Lane, John, Miller-Fleming, Tyne W, Brody, Jennifer A, Raffield, Laura M, McHugh, Caitlin P, Jain, Deepti, Gogarten, Stephanie M, Laurie, Cecelia A, Keramati, Ali, Arvanitis, Marios, Smith, Albert V, Heavner, Benjamin, Barwick, Lucas, Becker, Lewis C, Bis, Joshua C, Blangero, John, Bleecker, Eugene R, Burchard, Esteban G, Celedón, Juan C, Chang, Yen Pei C, Custer, Brian, Darbar, Dawood, de las Fuentes, Lisa, DeMeo, Dawn L, Freedman, Barry I, Garrett, Melanie E, Gladwin, Mark T, Heckbert, Susan R, Hidalgo, Bertha A, Irvin, Marguerite R, Islam, Talat, Johnson, W Craig, Kaab, Stefan, Launer, Lenore, Lee, Jiwon, Liu, Simin, Moscati, Arden, North, Kari E, Peyser, Patricia A, Rafaels, Nicholas, Seidman, Christine, Weeks, Daniel E, Wen, Fayun, Wheeler, Marsha M, Williams, L Keoki, Yang, Ivana V, Zhao, Wei, Aslibekyan, Stella, Auer, Paul L, Bowden, Donald W, Cade, Brian E, Chen, Zhanghua, Cho, Michael H, Cupples, L Adrienne, Curran, Joanne E, Daya, Michelle, Deka, Ranjan, Eng, Celeste, Fingerlin, Tasha E, Guo, Xiuqing, Hou, Lifang, Hwang, Shih-Jen, Johnsen, Jill M, Kenny, Eimear E, Levin, Albert M, Liu, Chunyu, Minster, Ryan L, Naseri, Take, Nouraie, Mehdi, Reupena, Muagututi A Sefuiva, Sabino, Ester C, Smith, Jennifer A, Smith, Nicholas L, Lasky-Su, Jessica, Taylor, James G, Telen, Marilyn J, Tiwari, Hemant K, Tracy, Russell P, White, Marquitta J, Zhang, Yingze, Wiggins, Kerri L, Weiss, Scott T, Vasan, Ramachandran S, Taylor, Kent D, Sinner, Moritz F, Silverman, Edwin K, Shoemaker, M Benjamin, Sheu, Wayne H-H, Sciurba, Frank, Schwartz, David A, Rotter, Jerome I, Roden, Daniel, Redline, Susan, and Raby, Benjamin A
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Epidemiology ,Biological Sciences ,Health Sciences ,Genetics ,Human Genome ,Biotechnology ,Aetiology ,2.1 Biological and endogenous factors ,Generic health relevance ,Good Health and Well Being ,NHLBI CARE Network ,NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium ,TOPMed Hematology and Hemostasis Working Group ,TOPMed Structural Variation Working Group - Abstract
Genetic studies on telomere length are important for understanding age-related diseases. Prior GWAS for leukocyte TL have been limited to European and Asian populations. Here, we report the first sequencing-based association study for TL across ancestrally-diverse individuals (European, African, Asian and Hispanic/Latino) from the NHLBI Trans-Omics for Precision Medicine (TOPMed) program. We used whole genome sequencing (WGS) of whole blood for variant genotype calling and the bioinformatic estimation of telomere length in n=109,122 individuals. We identified 59 sentinel variants (p-value
- Published
- 2022
31. Apollo Video Photogrammetry Estimation of Plume Impingement Effects (conference version)
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Immer, Christopher, Lane, John, Metzger, Philip, and Clements, Sandra
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Astrophysics - Earth and Planetary Astrophysics ,Physics - Instrumentation and Detectors - Abstract
The Constellation Project's planned return to the moon requires numerous landings at the same site. Since the top few centimeters are loosely packed regolith, plume impingement from the Lander ejects the granular material at high velocities. Much work is needed to understand the physics of plume impingement during landing in order to protect hardware surrounding the landing sites. While mostly qualitative in nature, the Apollo Lunar Module landing videos can provide a wealth of quantitative information using modern photogrammetry techniques. The authors have used the digitized videos to quantify plume impingement effects of the landing exhaust on the lunar surface. The dust ejection angle from the plume is estimated at 1-3 degrees. The lofted particle density is estimated at 10^8 - 10^13 particles/m^3. Additionally, evidence for ejection of large 10-15 cm sized objects and a dependence of ejection angle on thrust are presented. Further work is ongoing to continue quantitative analysis of the landing videos., Comment: 9 pages, 9 figures
- Published
- 2021
- Full Text
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32. Scaling of Erosion Rate in Subsonic Jet Experiments and Apollo Lunar Module Landings
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Metzger, Philip T., Lane, John E., Immer, Christopher D., Gamsky, Jacob N., Hauslein, Whitney, Li, Xiaoyi, Latta III, Robert C., and Donahue, Carly M.
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Astrophysics - Earth and Planetary Astrophysics - Abstract
Small scale jet-induced erosion experiments are useful for identifying the scaling of erosion with respect to the various physical parameters (gravity, grain size, gas velocity, gas density, grain density, etc.), and because they provide a data set for benchmarking numerical flow codes. We have performed experiments varying the physical parameters listed above (e.g., gravity was varied in reduced gravity aircraft flights). In all these experiments, a subsonic jet of gas impinges vertically on a bed of sand or lunar soil simulant forming a localized scour hole beneath the jet. Videography captures the erosion and scour hole formation processes, and analysis of these videos post-test identifies the scaling of these processes. This has produced important new insights into the physics of erosion. Based on these insights, we have developed an erosion rate model that can be applied to generalized situations, such as the erosion of soil beneath a horizontal gas flow on a planetary surface. This is important to lunar exploration because the rate of erosion beneath the rocket exhaust plume of a landing spacecraft will determine the amount of sand-blasting damage that can be inflicted upon surrounding hardware. Although the rocket exhaust plume at the exit of the nozzle is supersonic, the boundary layer on the lunar surface where erosion occurs is subsonic. The model has been benchmarked through comparison with the Apollo landing videos, which show the blowing lunar soil, and computational fluid dynamics simulations of those landings., Comment: 17 pages, 11 figures
- Published
- 2021
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33. Lunar Dust Particles Blown By Lander Engine Exhaust in Rarefied and Compressible Flow
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Lane, John E., Metzger, Philip T., and Carlson, Jeffrey W.
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Physics - Fluid Dynamics ,Astrophysics - Earth and Planetary Astrophysics - Abstract
Previously we presented a numerical model that predicts trajectories of lunar dust, soil, and gravel blown by the engine exhaust of a lunar lander. The model uses the gas density, velocity vector field, and temperature predicted by computational fluid dynamics (CFD) or Direct Simulation Monte Carlo (DSMC) simulations to compute the forces and accelerations acting on the regolith particles, one particle at a time (ignoring particle collisions until more advanced models are developed). Here we present significant improvements to the model, including the implementation of particle drag and lift formulas to account for the rarefaction and compressibility of the flow. It turns out that the drag force is reduced due to the rarefaction, but the lift is increased due to several effects such as particle rotation. A data matrix of particle sizes, engine thrusts (descent and ascent values for Altair), horizontal and vertical starting distances, and lander height above ground, have been tested using the latest version of the software. These results suggest that the previously reported 3 degree trajectory angle limit can be exceeded in several cases by as much as a factor of five. Particles that originate at a height of 1 cm above the surface from an outer crater rim can be propelled to angles of 5 degrees or more. Particles that start at 10 cm above the surface can be ejected with angles of up to 15 degrees. Mechanisms responsible for placing particles at starting heights above the surface may include the kinetics of horizontal collisions, as suggested by Discrete Element Method (DEM) simulations. We also present results showing the distance particles travel and their impact velocities. We then use the model to evaluate the effectiveness of berms or other methods to block the spray of soil at a lunar landing site., Comment: 9 pages, 6 figures
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- 2021
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34. ISRU Implications for Lunar and Martian Plume Effects
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Metzger, Philip T., Li, Xiaoyi, Immer, Christopher D., and Lane, John E.
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics ,Physics - Fluid Dynamics - Abstract
Experiments, analyses, and simulations have shown that the engine exhaust plume of a Mars lander large enough for human spaceflight will create a deep crater in the martian soil, blowing ejecta to approximately 1 km distance, damaging the bottom of the lander with high-momentum rock impacts, and possibly tilting the lander as the excavated hole collapses to become a broad residual crater upon engine cutoff. Because of this, we deem that we will not have adequate safety margins to land humans on Mars unless we robotically stabilize the soil to form in situ landing pads prior to the mission. It will take a significant amount of time working in a harsh off-planet environment to develop and certify the new technologies and procedures for in situ landing pad construction. The only place to reasonably accomplish this is on the Moon., Comment: 19 pages, 17 figures
- Published
- 2021
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35. Modification of Roberts' Theory for Rocket Exhaust Plumes Eroding Lunar Soil
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Metzger, Philip T., Lane, John E., and Immer, Christopher D.
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Astrophysics - Earth and Planetary Astrophysics ,Physics - Fluid Dynamics - Abstract
Roberts' model of lunar soil erosion beneath a landing rocket has been updated in several ways to predict the effects of future lunar landings. The model predicts, among other things, the number of divots that would result on surrounding hardware due to the impact of high velocity particulates, the amount and depth of surface material removed, the volume of ejected soil, its velocity, and the distance the particles travel on the Moon. The results are compared against measured results from the Apollo program and predictions are made for mitigating the spray around a future lunar outpost., Comment: 8 pages, 8 figures
- Published
- 2021
36. Cratering of Soil by Impinging Jets of Gas, with Application to Landing Rockets on Planetary Surfaces
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Metzger, Philip T., Vu, Bruce T., Taylor, D. E., Kromann, M. J., Fuchs, M., Yutko, B., Dokos, Adam, Immer, Christopher D., Lane, John E., Dunkel, M. B., Donahue, Carly M., and Latta III, Robert C.
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Astrophysics - Earth and Planetary Astrophysics ,Condensed Matter - Statistical Mechanics ,Physics - Fluid Dynamics - Abstract
Several physical mechanisms are involved in excavating granular materials beneath a vertical jet of gas. These occur, for example, beneath the exhaust plume of a rocket landing on the soil of the Moon or Mars. A series of experiments and simulations have been performed to provide a detailed view of the complex gas/soil interactions. Measurements have also been taken from the Apollo lunar landing videos and from photographs of the resulting terrain, and these help to demonstrate how the interactions extrapolate into the lunar environment. It is important to understand these processes at a fundamental level to support the on-going design of higher-fidelity numerical simulations and larger-scale experiments. These are needed to enable future lunar exploration wherein multiple hardware assets will be placed on the Moon within short distances of one another. The high-velocity spray of soil from landing spacecraft must be accurately predicted and controlled lest it erosively damage the surrounding hardware., Comment: 6 pages, 5 figures
- Published
- 2021
37. Major John Lane
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Lane, John, Cullinane, Michael Patrick, editor, and Johnston-White, Iain, editor
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- 2023
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38. Bloody Tarawa: The 2d Marine Division, November 20-23, 1943
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Hammel, Eric and Lane, John E.
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BOOK REVIEWS - Published
- 2006
39. Management of Articular Cartilage Lesions of the Glenohumeral Joint
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Amar, Karun, Singh, Anshuman, Lane, John G., Gobbi, Alberto, editor, Lane, John G., editor, Longo, Umile Giuseppe, editor, and Dallo, Ignacio, editor
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- 2022
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40. Osteochondral Pathologies as Effect of General Diseases
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Ambach, Mary A., Rogers, Christopher J., Lane, John G., Gobbi, Alberto, editor, Lane, John G., editor, Longo, Umile Giuseppe, editor, and Dallo, Ignacio, editor
- Published
- 2022
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41. Failure or Delay of Fracture Healing
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Morales, Macarena, Lane, John G., Sciarretta, Fabio, Dallo, Ignacio, Gobbi, Alberto, Gobbi, Alberto, editor, Lane, John G., editor, Longo, Umile Giuseppe, editor, and Dallo, Ignacio, editor
- Published
- 2022
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42. Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program
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Hu, Yao, Stilp, Adrienne M, McHugh, Caitlin P, Rao, Shuquan, Jain, Deepti, Zheng, Xiuwen, Lane, John, de Bellefon, Sébastian Méric, Raffield, Laura M, Chen, Ming-Huei, Yanek, Lisa R, Wheeler, Marsha, Yao, Yao, Ren, Chunyan, Broome, Jai, Moon, Jee-Young, de Vries, Paul S, Hobbs, Brian D, Sun, Quan, Surendran, Praveen, Brody, Jennifer A, Blackwell, Thomas W, Choquet, Hélène, Ryan, Kathleen, Duggirala, Ravindranath, Heard-Costa, Nancy, Wang, Zhe, Chami, Nathalie, Preuss, Michael H, Min, Nancy, Ekunwe, Lynette, Lange, Leslie A, Cushman, Mary, Faraday, Nauder, Curran, Joanne E, Almasy, Laura, Kundu, Kousik, Smith, Albert V, Gabriel, Stacey, Rotter, Jerome I, Fornage, Myriam, Lloyd-Jones, Donald M, Vasan, Ramachandran S, Smith, Nicholas L, North, Kari E, Boerwinkle, Eric, Becker, Lewis C, Lewis, Joshua P, Abecasis, Goncalo R, Hou, Lifang, O’Connell, Jeffrey R, Morrison, Alanna C, Beaty, Terri H, Kaplan, Robert, Correa, Adolfo, Blangero, John, Jorgenson, Eric, Psaty, Bruce M, Kooperberg, Charles, Walton, Russell T, Kleinstiver, Benjamin P, Tang, Hua, Loos, Ruth JF, Soranzo, Nicole, Butterworth, Adam S, Nickerson, Debbie, Rich, Stephen S, Mitchell, Braxton D, Johnson, Andrew D, Auer, Paul L, Li, Yun, Mathias, Rasika A, Lettre, Guillaume, Pankratz, Nathan, Laurie, Cathy C, Laurie, Cecelia A, Bauer, Daniel E, Conomos, Matthew P, Reiner, Alexander P, and Consortium, NHLBI Trans-Omics for Precision Medicine
- Subjects
Epidemiology ,Biological Sciences ,Health Sciences ,Genetics ,Biotechnology ,Clinical Research ,Hematology ,Human Genome ,Aetiology ,2.1 Biological and endogenous factors ,Good Health and Well Being ,Adult ,Aged ,Chromosomes ,Human ,Pair 16 ,Datasets as Topic ,Erythrocytes ,Female ,Gene Editing ,Genetic Variation ,Genome-Wide Association Study ,HEK293 Cells ,Humans ,Male ,Middle Aged ,National Heart ,Lung ,and Blood Institute (U.S.) ,Phenotype ,Quality Control ,Reproducibility of Results ,United States ,NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium ,base editing ,red blood cell traits ,whole-genome sequencing ,Medical and Health Sciences ,Genetics & Heredity ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
Whole-genome sequencing (WGS), a powerful tool for detecting novel coding and non-coding disease-causing variants, has largely been applied to clinical diagnosis of inherited disorders. Here we leveraged WGS data in up to 62,653 ethnically diverse participants from the NHLBI Trans-Omics for Precision Medicine (TOPMed) program and assessed statistical association of variants with seven red blood cell (RBC) quantitative traits. We discovered 14 single variant-RBC trait associations at 12 genomic loci, which have not been reported previously. Several of the RBC trait-variant associations (RPN1, ELL2, MIDN, HBB, HBA1, PIEZO1, and G6PD) were replicated in independent GWAS datasets imputed to the TOPMed reference panel. Most of these discovered variants are rare/low frequency, and several are observed disproportionately among non-European Ancestry (African, Hispanic/Latino, or East Asian) populations. We identified a 3 bp indel p.Lys2169del (g.88717175_88717177TCT[4]) (common only in the Ashkenazi Jewish population) of PIEZO1, a gene responsible for the Mendelian red cell disorder hereditary xerocytosis (MIM: 194380), associated with higher mean corpuscular hemoglobin concentration (MCHC). In stepwise conditional analysis and in gene-based rare variant aggregated association analysis, we identified several of the variants in HBB, HBA1, TMPRSS6, and G6PD that represent the carrier state for known coding, promoter, or splice site loss-of-function variants that cause inherited RBC disorders. Finally, we applied base and nuclease editing to demonstrate that the sentinel variant rs112097551 (nearest gene RPN1) acts through a cis-regulatory element that exerts long-range control of the gene RUVBL1 which is essential for hematopoiesis. Together, these results demonstrate the utility of WGS in ethnically diverse population-based samples and gene editing for expanding knowledge of the genetic architecture of quantitative hematologic traits and suggest a continuum between complex trait and Mendelian red cell disorders.
- Published
- 2021
43. Upper Extremity Access Has Worse Outcomes in F/BEVAR Using the VQI Dataset
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Patel, Rohini J., Sibona, Agustin, Malas, Mahmoud B., Lane, John S., Al-Nouri, Omar, and Barleben, Andrew R.
- Published
- 2023
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44. Mitochondrial DNA copy number and incident atrial fibrillation
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Zhao, Di, Bartz, Traci M, Sotoodehnia, Nona, Post, Wendy S, Heckbert, Susan R, Alonso, Alvaro, Longchamps, Ryan J, Castellani, Christina A, Hong, Yun Soo, Rotter, Jerome I, Lin, Henry J, O’Rourke, Brian, Pankratz, Nathan, Lane, John A, Yang, Stephanie Y, Guallar, Eliseo, and Arking, Dan E
- Subjects
Biomedical and Clinical Sciences ,Heart Disease ,Atherosclerosis ,Aging ,Cardiovascular ,Genetics ,Clinical Research ,Prevention ,Aetiology ,2.1 Biological and endogenous factors ,Good Health and Well Being ,Atrial Fibrillation ,Cohort Studies ,DNA Copy Number Variations ,DNA ,Mitochondrial ,Female ,Humans ,Male ,Middle Aged ,Prospective Studies ,Risk Factors ,Mitochondria DNA copy number ,mtDNA ,Atrial fibrillation ,Medical and Health Sciences ,General & Internal Medicine ,Biomedical and clinical sciences ,Health sciences - Abstract
BackgroundMechanistic studies suggest that mitochondria DNA (mtDNA) dysfunction may be associated with increased risk of atrial fibrillation (AF). The association between mtDNA copy number (mtDNA-CN) and incident AF in the general population, however, remains unknown.MethodsWe conducted prospective analyses of 19,709 participants from the Atherosclerosis Risk in Communities Study (ARIC), the Multi-Ethnic Study of Atherosclerosis (MESA), and the Cardiovascular Health Study (CHS). mtDNA-CN from the peripheral blood was calculated from probe intensities on the Affymetrix Genome-Wide Human single nucleotide polymorphisms (SNP) Array 6.0 in ARIC and MESA and from multiplexed real-time quantitative polymerase chain reaction (qPCR) in CHS. Incident AF cases were identified through electrocardiograms, review of hospital discharge codes, Medicare claims, and death certificates.ResultsThe median follow-up time was 21.4 years in ARIC, 12.9 years in MESA, and 11.0 years in CHS, during which 4021 participants developed incident atrial fibrillation (1761 in ARIC, 790 in MESA, and 1470 in CHS). In fully adjusted models, participants with the lowest quintile of mitochondria DNA copy number had an overall 13% increased risk (95% CI 1 to 27%) of incident atrial fibrillation compared to those with the highest quintile. Dose-response spline analysis also showed an inverse association between mitochondria DNA copy number and hazard for atrial fibrillation for all three cohorts. These associations were consistent across subgroups.ConclusionsMitochondria DNA copy number was inversely associated with the risk of AF independent of traditional cardiovascular risk factors. These findings implicate mitochondria DNA copy number as a novel risk factor for atrial fibrillation. Further research is warranted to understand the underlying mechanisms and to evaluate the role of mitochondria DNA copy number in the management of atrial fibrillation risk.
- Published
- 2020
45. Endovascular Aneurysm Sealing is Associated with Higher Medium-Term Survival than Traditional EVAR
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O'Donnell, Thomas FX, Carpenter, Jeffrey P, Lane, John S, Trani, Jose, Hussain, Sajjad, Healey, Christopher, Malas, Mahmoud B, and Schermerhorn, Marc L
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Biomedical and Clinical Sciences ,Clinical Sciences ,Cardiovascular ,Good Health and Well Being ,Aged ,Aged ,80 and over ,Aortic Aneurysm ,Abdominal ,Blood Vessel Prosthesis ,Blood Vessel Prosthesis Implantation ,Endovascular Procedures ,Female ,Humans ,Male ,Postoperative Complications ,Prosthesis Design ,Registries ,Retrospective Studies ,Risk Assessment ,Risk Factors ,Stents ,Time Factors ,Treatment Outcome ,Cardiovascular System & Hematology ,Cardiovascular medicine and haematology ,Clinical sciences ,Dentistry - Abstract
BackgroundEndovascular aneurysm repair (EVAR) is the dominant treatment modality for abdominal aortic aneurysm (AAA). Periprocedural risks are low, and cardiovascular events are the principle determinants of long-term survival. Recently, the concept of endovascular aneurysm sealing (EVAS) has been introduced into clinical investigation. In previous cohort studies, EVAS has been associated with a lower all-cause mortality than expected despite device issues. We used a propensity weighted approach to investigate whether EVAS was associated with lower all-cause mortality after aneurysm repair.MethodsWe compared 333 patients in the Nellix United States Investigational Device Exemption trial to 15,431 controls from the Vascular Quality Initiative between 2014 and 2016 after applying the exclusion criteria from the investigational device exemption (hemodialysis, creatinine > 2.0 mg/dL, or rupture). We calculated propensity scores and applied inverse probability weighting to compare risk adjusted medium-term survival using Kaplan-Meier and Cox regression.ResultsAfter weighting, patients treated with the Nellix EVAS system experienced higher 3-year survival than controls from the Vascular Quality Initiative (93% vs. 88%, respectively). This corresponded to a 41% lower risk of mortality for EVAS compared with EVAR (HR 0.59 [0.38-0.92], P = 0.02). Subgroup analysis demonstrated that the association between EVAS and higher survival was strongest in the subgroup of patients with aneurysms over 5.5 cm (P for interaction
- Published
- 2020
46. Evaluation of mitochondrial DNA copy number estimation techniques.
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Longchamps, Ryan J, Castellani, Christina A, Yang, Stephanie Y, Newcomb, Charles E, Sumpter, Jason A, Lane, John, Grove, Megan L, Guallar, Eliseo, Pankratz, Nathan, Taylor, Kent D, Rotter, Jerome I, Boerwinkle, Eric, and Arking, Dan E
- Subjects
Humans ,DNA ,Mitochondrial ,Genomics ,Gene Dosage ,Aged ,Middle Aged ,Female ,Male ,DNA ,Mitochondrial ,General Science & Technology - Abstract
Mitochondrial DNA copy number (mtDNA-CN), a measure of the number of mitochondrial genomes per cell, is a minimally invasive proxy measure for mitochondrial function and has been associated with several aging-related diseases. Although quantitative real-time PCR (qPCR) is the current gold standard method for measuring mtDNA-CN, mtDNA-CN can also be measured from genotyping microarray probe intensities and DNA sequencing read counts. To conduct a comprehensive examination on the performance of these methods, we use known mtDNA-CN correlates (age, sex, white blood cell count, Duffy locus genotype, incident cardiovascular disease) to evaluate mtDNA-CN calculated from qPCR, two microarray platforms, as well as whole genome (WGS) and whole exome sequence (WES) data across 1,085 participants from the Atherosclerosis Risk in Communities (ARIC) study and 3,489 participants from the Multi-Ethnic Study of Atherosclerosis (MESA). We observe mtDNA-CN derived from WGS data is significantly more associated with known correlates compared to all other methods (p < 0.001). Additionally, mtDNA-CN measured from WGS is on average more significantly associated with traits by 5.6 orders of magnitude and has effect size estimates 5.8 times more extreme than the current gold standard of qPCR. We further investigated the role of DNA extraction method on mtDNA-CN estimate reproducibility and found mtDNA-CN estimated from cell lysate is significantly less variable than traditional phenol-chloroform-isoamyl alcohol (p = 5.44x10-4) and silica-based column selection (p = 2.82x10-7). In conclusion, we recommend the field moves towards more accurate methods for mtDNA-CN, as well as re-analyze trait associations as more WGS data becomes available from larger initiatives such as TOPMed.
- Published
- 2020
47. Rare Germline DICER1 Variants in Pediatric Patients With Cushings Disease: What Is Their Role?
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Martínez de LaPiscina, Idoia, Hernández-Ramírez, Laura, Portillo, Nancy, Gómez-Gila, Ana, Urrutia, Inés, Martínez-Salazar, Rosa, García-Castaño, Alejandro, Aguayo, Aníbal, Rica, Itxaso, Gaztambide, Sonia, Faucz, Fabio, Keil, Margaret, Lodish, Maya, Quezado, Martha, Pankratz, Nathan, Chittiboina, Prashant, Lane, John, Kay, Denise, Mills, James, Castaño, Luis, and Stratakis, Constantine
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Cushings disease ,DICER1 ,corticotropinoma ,disease-modifying gene ,pituitary neuroendocrine tumor ,Adolescent ,Adult ,Child ,Cohort Studies ,DEAD-box RNA Helicases ,Female ,Genetic Testing ,Germ-Line Mutation ,Humans ,Male ,Pituitary ACTH Hypersecretion ,Ribonuclease III ,Young Adult - Abstract
Context: The DICER1 syndrome is a multiple neoplasia disorder caused by germline mutations in the DICER1 gene. In DICER1 patients, aggressive congenital pituitary tumors lead to neonatal Cushings disease (CD). The role of DICER1 in other corticotropinomas, however, remains unknown. Objective: To perform a comprehensive screening for DICER1 variants in a large cohort of CD patients, and to analyze their possible contribution to the phenotype. Design, setting, patients, and interventions: We included 192 CD cases: ten young-onset (age
- Published
- 2020
48. Impact of Flow Reversal Duration on Neurological Outcomes of Transcarotid Artery Revascularization (TCAR)
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Naazie, Isaac N., Dodo-Williams, Taiwo, Janssen, Claire, Lane, John, Smeds, Matthew R., and Malas, Mahmoud
- Published
- 2023
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49. Whole-exome sequencing in 415,422 individuals identifies rare variants associated with mitochondrial DNA copy number
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Pillalamarri, Vamsee, Shi, Wen, Say, Conrad, Yang, Stephanie, Lane, John, Guallar, Eliseo, Pankratz, Nathan, and Arking, Dan E.
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- 2023
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50. A Single-Institution Case Series of Total Endovascular Relining for Type 3 Endoleaks in Traditional Endovascular Aneurysm Repair (EVAR) Grafts with Raised Bifurcations
- Author
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Patel, Rohini J., Sibona, Agustin, Malas, Mahmoud B., Al-Nouri, Omar, Lane, John S., and Barleben, Andrew R.
- Published
- 2023
- Full Text
- View/download PDF
Catalog
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