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Fusarium wilt is a destructive fungal disease of okra that limits okra production in the okra-growing region. In 2015, a new pathogen was identified in an okra field that caused wilt disease in okra. However, no detailed morphological, molecular, or physiological studies have been conducted to characterize this pathogen. The causal agent was identified as Fusarium buharicum by morphological characterization and elongation factor-1α gene sequencing. Moreover, to determine pathogen characteristics that may be useful for future disease management, the effects of different media, temperature, and pH on mycelium growth, conidia production, and germination were studied. Potato sucrose agar and potato dextrose agar were the best media for mycelial growth, whereas rice husk media were suitable for conidial production. The optimal temperature for mycelial growth and conidial germination was 28 °C. Meanwhile, pH ranging from 5 to 9 was suitable for both mycelial growth and conidial germination. The host range assay revealed that F. buharicum infected only okra, but not the other crops tested. Furthermore, in planta biofungicides screening showed that Ecohop (Trichoderma atroviride) reduced wilt disease incidence by 93.8% over control. Characterization of the pathogen along with biofungicide screening would be helpful for the detection and development of management practices to eliminate production loss in the okra field caused by an emerging fungal pathogen. [ABSTRACT FROM AUTHOR]

The class Myxomycetes consists of free-living protists characterised by their complex life cycle, which includes both microscopic (amoebae, flagellates and cists) and macroscopic stages (spore-bearing fruiting bodies, sclerotia, and plasmodia). Within it, the order Physarales, with more than 450 recognised species, constitutes the largest group. Although previous studies have shown the polyphyly of some of the traditionally accepted genera, its internal phylogenetic relationships have remained uncertain so far, and together with the lack of data for some key species, it prevented any taxonomic and nomenclatural revisions. We have compiled a substantially expanded dataset in terms of both taxon sampling and molecular data, including most of the genera described to date and four unlinked DNA regions, for which we provide partial sequences: nSSU, EF-1a, a-Tub, and mtSSU, analysed through maximum likelihood and Bayesian methods. Our results confirm that the family Didymiaceae is paraphyletic to the rest of Physarales. Within Didymiaceae s.lat., the recent reinstatement of the genus Polyschismium for most species traditionally ascribed to Lepidoderma, except for the type (Ronikier et al. 2022), is further supported here, as well as the definite inclusion of the genus Mucilago in Didymium and Lepidoderma s.str. (L. tigrinum) in Diderma (Prikhodko et al. 2023). Additionally, the genus Diachea is redefined to include some species pre viously treated in Physaraceae (Craterium spp. with true columella). Within the monophyletic family Physaraceae, most genera are recovered as polyphyletic, suggesting that they should be no longer accepted as currently defined. However, the lack of resolution of some relationships within Physaraceae prevents us from resuscitating or creating several new genera to mitigate polyphyly. Among the well-defined groups with clear molecular signatures, we propose two taxonomic and nomenclatural changes at generic level: 1) a new genus, Nannengaella, is proposed for a major clade containing Physarum globuliferum and other species with heavily calcified sporophores and, often, a true calcareous columella; 2) Lignydium is resurrected for the clade containing Fuligo muscorum. Additionally, Trichamphora is suggested as the correct name for the clade containing Physarum pezizoideum. The taxonomy and nomenclature of some provisional genera, currently synonymous with Fuligo and Physarum, are disentangled, and we provide a comprehensive and updated nomenclatural conspectus that can be used when better resolved phylogenies are obtained. In total, 22 new combinations are proposed in different genera. A provisional key to the genera of the order is also provided. [ABSTRACT FROM AUTHOR]

Abstract Background Fleas are the most economically significant blood-feeding ectoparasites worldwide. Ctenocephalides felis and Pulex irritans can parasitize various animals closely related to humans and are of high veterinary significance. Methods In this study, 82 samples were collected from 7 provinces of China. Through studying the nuclear genes ITS1 and EF-1α and two different mitochondrial genes cox1 and cox2, the population genetics and genetic variation of C. felis and P. irritans in China were further investigated. Results The intraspecies differences between C. felis and P. irritans ranged from 0 to 3.9%. The interspecific variance in the EF-1α, cox1, and cox2 sequences was 8.2–18.3%, while the ITS1 sequence was 50.1–52.2%. High genetic diversity was observed in both C. felis and P. irritans, and the nucleotide diversity of cox1 was higher than that of cox2. Moderate gene flow was detected in the C. felis and P. irritans populations. Both species possessed many haplotypes, but the haplotype distribution was uneven. Fu's Fs and Tajima's D tests showed that C. felis and P. irritans experienced a bottleneck effect in Guangxi Zhuang Autonomous Region and Henan province. Evolutionary analysis suggested that C. felis may have two geographical lineages in China, while no multiple lineages of P.irritans were found. Conclusions Using sequence comparison and the construction of phylogenetic trees, we found a moderate amount of gene flow in the C. felis and P. irritans populations. Both species possessed many haplotypes, but the distribution of haplotypes varied among the provinces. Fu’s Fs and Tajima’s D tests indicated that both species had experienced a bottleneck effect in Guangxi and Henan provinces. Evolutionary analysis suggested that C. felis may have two geographical lineages in China, while no multiple lineages of P.irritans were found. This study will help better understand fleas' population genetics and evolutionary biology. Graphical Abstract

Ophiocordyceps sinensis Berk. is a fungal parasite that parasitizes the larvae of Hepialidae and is endemic to the Qinghai–Tibet Plateau (QTP). The phylogeny and divergence time of O. sinensis and its host insects were analyzed for 137 individuals from 48 O. sinensis populations based on the elongation factor 1 alpha (EF-1α) gene. Lower nucleotide variation, with only 7 and 16 EF-1α haplotypes, was detected in O. sinensis and its host insects, respectively. The isolated and broad distribution patterns coexisted in both O. sinensis and its host insects on the QTP. The divergence time estimates show that O. sinensis and its host insects originated later than 14.33 million years (Myr) and earlier than 23.60 Myr in the Miocene period, and the major differentiation occurred later than 4 Myr. Their origin and differentiation match well with the second and third uplifts of the QTP, respectively. The host insects from the O. sinensis populations distributed around Qinghai Lake are inferred as an ancient and relict species that has survived various geological events of the QTP. It is suitable to estimate the divergence times of both O. sinensis and its host insects from the same individuals using one gene: EF-1α. Our findings of the origin, phylogeny, and evolution of the endemic species also support the epoch of geological events on the QTP. [ABSTRACT FROM AUTHOR]

Simple Summary: Rhopalosiphum padi and Rhopalosiphum maidis are two common phloem-sucking pests on maize which can even transmit viruses (i.e., maize dwarf mosaic virus, MDMV) leading to severe yield losses of maize. Population genetic studies provide information about how much ecological and genetic divergence has occurred among many near and distant populations. We investigated the genetic diversity of both Rhopalosiphum aphids collected from maize in China and Europe, and we found that different populations of R. maidis showed low genetic variation, indicating a high level of gene flow of both nuclear and mitochondrial genes in this aphid. However, the mitochondrial gene of R. padi exhibited obvious genetic differentiation between Chinese samples and European samples. In conclusion, the domestic populations of both R. padi and R. maidis showed low genetic diversity, and the long distance between China and Europe may interrupt the gene exchange of aphids. Population genetic studies can reveal clues about the evolution of adaptive strategies of aphid species in agroecosystems and demonstrate the influence of environmental factors on the genetic diversity and gene flow among aphid populations. To investigate the genetic diversity of two Rhopalosiphum aphid species from different geographical regions, 32 populations (n = 535) of the bird cherry-oat aphid (Rhopalosiphum padi Linnaeus) and 38 populations (n = 808) of the corn leaf aphid (Rhopalosiphum maidis Fitch) from China and Europe were analyzed using one nuclear (elongation factor-1 alpha) and two mitochondrial (cytochrome oxidase I and II) genes. Based on the COI-COII sequencing, two obvious clades between Chinese and European populations and a low level of gene flow (Nm = 0.15) were detected in R. padi, while no geographical-associated genetic variation was found for EF-1α in this species. All genes in R. maidis had low genetic variation, indicating a high level of gene flow (Nm = 5.31 of COI-COII and Nm = 2.89 of EF-1α). Based on the mitochondrial result of R. padi, we concluded that the long distance between China and Europe may be interrupting the gene flow. The discordant results of nuclear gene analyses in R. padi may be due to the slower evolution of nuclear genes compared to mitochondrial genes. The gene exchange may occur gradually with the potential for continuous migration of the aphid. This study facilitates the design of control strategies for these pests. [ABSTRACT FROM AUTHOR]

Cluster flies of the genus Pollenia are known as mass invaders of human dwellings, but are important plant pollinators in the temperate climatic zone. Despite being the most species-rich and widespread genus in Polleniidae, no study to date has tested infrageneric relationships using molecular data. Here we use three molecular markers, COI , Ef-1α and CAD to reconstruct the phylogenetic relationships between 18 West Palaearctic species of Pollenia , representing eight predefined morphological species groups, using both maximum likelihood and Bayesian approaches. We show several instances where morphological and molecular results are congruent, but also instances where they are discordant. We develop a COI barcode reference library for 18 species, containing newly generated data (87 sequences) and sequences retrieved from the Barcode of Life Data System (BOLD). We analyse this dataset using both Automatic Barcode Gap Discovery (ABGD) and Bayesian Phylogenetics & Phylogeography (BPP) methods to validate morphological species hypotheses and delimit species. The results of these species delimitation analyses were, in most cases, identical and aligned with predefined morphological species concepts. Based on the results of our analyses, we synonymize P. moravica (stat. rev.) with P. amentaria and assign 191 unidentified sequences from BOLD to named morphospecies. [ABSTRACT FROM AUTHOR]

Panax ginseng is a valuable medicinal plant which is affected by many diseases during its long cultivation period. Ginseng root rot, caused by Fusarium oxysporum, has become severe in China. This soilborne pathogen comprises many formae speciales based on host specificity. Ten representative isolates from diseased ginseng rot root showed pathogenicity on ginseng. To identify the forma specialis of the F. oxysporum strains, host range tests of three representative isolates were carried out on nine plant species. All three isolates caused severe symptoms only on ginseng, but only slight or no visual symptoms on the other eight hosts, indicating that the strains were host-specific to ginseng. Phylogenetic trees were constructed based on sequences of the translation elongation factor 1-α (EF-1α) gene, two endopolygalacturonase genes (Pg1, Pg5) and two exopolygalacturonase genes (Pgx1 and Pgx4). The ten F. oxysporum isolates from ginseng clustered into a unique group clearly separated from other formae speciales already described. Based on the host range tests and phylogenetic analyses, the isolates of F. oxysporum derived from ginseng have been identified as a new forma specialis, designated Fusarium oxysporum f. sp. ginseng. This is the first report of forma specialis of F. oxysporum on ginseng.

Background: Fleas are the most economically significant blood-feeding ectoparasites worldwide. Ctenocephalides felis and Pulex irritans can parasitize various animals closely related to humans and are of high veterinary significance. Methods: In this study, 82 samples were collected from 7 provinces of China. Through studying the nuclear genes ITS1 and EF-1α and two different mitochondrial genes cox1 and cox2, the population genetics and genetic variation of C. felis and P. irritans in China were further investigated. Results: The intraspecies differences between C. felis and P. irritans ranged from 0 to 3.9%. The interspecific variance in the EF-1α, cox1, and cox2 sequences was 8.2–18.3%, while the ITS1 sequence was 50.1–52.2%. High genetic diversity was observed in both C. felis and P. irritans, and the nucleotide diversity of cox1 was higher than that of cox2. Moderate gene flow was detected in the C. felis and P. irritans populations. Both species possessed many haplotypes, but the haplotype distribution was uneven. Fu's Fs and Tajima's D tests showed that C. felis and P. irritans experienced a bottleneck effect in Guangxi Zhuang Autonomous Region and Henan province. Evolutionary analysis suggested that C. felis may have two geographical lineages in China, while no multiple lineages of P.irritans were found. Conclusions: Using sequence comparison and the construction of phylogenetic trees, we found a moderate amount of gene flow in the C. felis and P. irritans populations. Both species possessed many haplotypes, but the distribution of haplotypes varied among the provinces. Fu's Fs and Tajima's D tests indicated that both species had experienced a bottleneck effect in Guangxi and Henan provinces. Evolutionary analysis suggested that C. felis may have two geographical lineages in China, while no multiple lineages of P.irritans were found. This study will help better understand fleas' population genetics and evolutionary biology. [ABSTRACT FROM AUTHOR]

The aphid genus Cerataphis Lichtenstein is native to Southeast Asia although several species have been distributed to other tropical regions of the world. Cerataphis brasiliensis (Hempel) and Cerataphis lataniae (Boisduval) are of interest due to their potential as pests on palms. Those species and Cerataphis orchidearum (Westwood) may be morphologically confused with each other. In Costa Rica, two species have been reported, C. brasiliensis and C. orchidearum. This work aimed to contribute molecular data and ecological observations for species of Cerataphis present in Costa Rica. Few colonies (low frequency of occurrence) of C. brasiliensis and C. orchidearum were recorded during a survey conducted during 2014. Ten ant species were found associated to these aphid colonies. Partial sequences for the genes COI and EF-1α were obtained and compared to the few sequences available for this genus in public databases. Species identification by COI (barcoding) was not conclusive. Phylogenetic analyses and similarity pairwise comparisons showed a close relationship with the genus Tuberaphis Takahashi, including the clustering of mixed species from both genera. Yeast-like symbionts were detected by PCR in individuals of both Cerataphis species found in Costa Rica. Overall, the results suggest there is a need of curated sequence data representing the different Cerataphis species worldwide. [ABSTRACT FROM AUTHOR]

Population genetic studies can reveal clues about the evolution of adaptive strategies of aphid species in agroecosystems and demonstrate the influence of environmental factors on the genetic diversity and gene flow among aphid populations. To investigate the genetic diversity of two Rhopalosiphum aphid species from different geographical regions, 32 populations (n = 535) of the bird cherry-oat aphid (Rhopalosiphum padi Linnaeus) and 38 populations (n = 808) of the corn leaf aphid (Rhopalosiphum maidis Fitch) from China and Europe were analyzed using one nuclear (elongation factor-1 alpha) and two mitochondrial (cytochrome oxidase I and II) genes. Based on the COI-COII sequencing, two obvious clades between Chinese and European populations and a low level of gene flow (Nm = 0.15) were detected in R. padi, while no geographical-associated genetic variation was found for EF-1α in this species. All genes in R. maidis had low genetic variation, indicating a high level of gene flow (Nm = 5.31 of COI-COII and Nm = 2.89 of EF-1α). Based on the mitochondrial result of R. padi, we concluded that the long distance between China and Europe may be interrupting the gene flow. The discordant results of nuclear gene analyses in R. padi may be due to the slower evolution of nuclear genes compared to mitochondrial genes. The gene exchange may occur gradually with the potential for continuous migration of the aphid. This study facilitates the design of control strategies for these pests.

The correct identification of morphological species is a key task for species richness estimation of any ecosystem. Although body colour is a widely used character identifying European Lepidocyrtus species, recent investigations using molecular data have revealed that species delineation using body colour can result in an underestimation of real species diversity because of the presence of cryptic species. Lepidocyrtus violaceus is a European species characterised by its dark violet body colour. Its wide distribution leads us to suspect that several cryptic species can be present within this morphospecies. Since traditional morphological characters have appeared insufficient for real diversity identification in Lepidocyrtus , new morphological characters were needed in order to describe the cryptic diversity detected by molecular data in this genus. Pseudopores are integumentary structures present in all Lepidocyrtus species, but the distribution of these structures has not been properly described in the genus, as well as in Entomobryioidea overall. In the present work we aimed to analyse whether L. violaceus is a monophyletic entity in Europe. Moreover, we aimed to determine if the position and number of pseudopores on the different parts of the body and appendages is a phylogenetically useful character in the identification of the species or superspecific entities. Fourteen populations of L. violaceus from five European countries, and another 25 Lepidocyrtus species from nine European countries have been studied. In total, 208 specimens have been analysed morphologically and half of them were studied molecularly using sequences of the genes COXII and EF-1α. Molecular data revealed that the widely distributed Lepidocyrtus violaceus morphospecies is a polyphyletic entity in Europe. Between 6 and 12 diferent cryptic species have been detected within this European morphospecies, and only the presence of pseudopores on the basal plate of the fourth abdominal segment has been found to be a promising diagnostic character between them. A common basal pattern of pseudopore distribution has been recognised in the European members of the genus, and also a diferential pattern within each European species group. As a general trend, an increase in the number of pseudopores has been detected from the most basal to the most derived species groups in the phylogeny of the genus in Europe. Species richness estimation of European Collembola using morphology is challenged by molecular detection of cryptic species. In this study, the morphological and molecular analysis of 26 European Lepidocyrtus species reveals that the common L. violaceus morphospecies is a polyphyletic entity in Europe. The number and distribution of pseudopores on body and appendages is a promising morphological character with a clear phylogenetic signal that can help in describing the detected cryptic diversity. [ABSTRACT FROM AUTHOR]

Aim: Biogeographical studies on the entire ranges of widely distributed species can change our perception of species' range dynamics. We studied the effects of Pleistocene glacial cycles on current butterfly species distributions, aiming to uncover complex biogeographic patterns in the Holarctic, a region dramatically affected by Cenozoic climate change. Location: Eurasia and North America. Taxon: Boloria chariclea, Agriades optilete, Carterocephalus palaemon, Oeneis jutta. Methods: We reconstructed the biogeographic history of four butterfly species differing in habitat preferences (B. chariclea – tundra, A. optilete – bogs, C. palaemon – temperate grasslands, O. jutta – taiga), using one mitochondrial and two nuclear DNA markers and species distribution modelling. Results: Except for B. chariclea, all species originated in Eurasia. The open habitat species A. optilete and C. palaemon formed widely distributed east‐west genetic clusters in continental Asia and clusters separated from them in Europe. Genetic clusters of the taiga species O. jutta were not geographically separated in Eurasia, suggesting Pleistocene fragmentation and recent reconnection. The glaciated North America was recolonized from Beringian and southerly situated refugia by all four species. Main conclusions: The Pleistocene mammoth steppe allowed a widespread continuous distribution of open habitat butterflies, while in contrast the distribution of a taiga‐specialist species was more limited. In the mostly flat and continental North Asia, the butterflies of various types of open habitats survived ice age in widely distributed east‐west belts. In the mountainous and oceanic regions of Europe, Beringia and west North America, all four species persisted in contracted areas during the glacials. After deglaciation, they expanded their ranges and formed contact zones among populations. To conclude, the harsh climate of the glacials did not represent an obstacle for butterflies. Instead, different habitat specialists selected their own ways to thrive in the dynamic conditions of Quaternary glacial periods. [ABSTRACT FROM AUTHOR]

The taxonomy of the widespread Afrotropical ambrosia beetle Xyleborus principalis Eichhoff, 1878 is reviewed based on morphological and molecular data. The species is both morphologically and genetically variable but without any structure corresponding to geography, or between genes and morphology. Examination of type material and other specimens collected across Africa and Madagascar documented the existence of a single species. New synonymies are proposed for Xyleborus principalis (=X. alluaudi Schaufuss, 1897, =X. camerunus Hagedorn, 1910, =X. consobrinus Eggers, 1932, =X. discrepans Schedl, 1950, =X. annectens Schedl, 1957, =X. peramploides Schedl, 1957). [ABSTRACT FROM AUTHOR]

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Copyright of Avian Diseases is the property of American Association of Avian Pathologists, Inc. and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

It is reported that the expression level of EF-1α in Colpoda cucullus Nag-1 is markedly enhanced within several hours after the onset of encystment induction. In this study, the Colpoda strain (stock EQ-1) known to promptly encyst also showed early EF-1α expression while the strain (stock ES-1) known to show prolonged encystment also showed delayed EF-1α expression. In cells in which EF-1α is silenced by feeding RNAi, the cyst formation was prolonged, but normal cyst walls were formed. These results suggest that Colpoda EF-1α is involved in the early morphogenetic events of the resting cyst formation by accelerating protein translation or cytosleletal dynamics such as microtubule disintegration.

Species identification is a crucial step in forensic entomology. In several cases the calculation of the larval age allows the estimation of the minimum Post-Mortem Interval (mPMI). A correct identification of the species is the first step for a correct mPMI estimation. To overcome the difficulties due to the morphological identification especially of the immature stages, a molecular approach can be applied. However, difficulties in separation of closely related species are still an unsolved problem. Sequences of 4 different genes (COI, ND5, EF-1α, PER) of 13 different fly species collected during forensic experiments (Calliphora vicina, Calliphora vomitoria, Lucilia sericata, Lucilia illustris, Lucilia caesar, Chrysomya albiceps, Phormia regina, Cynomya mortuorum, Sarcophaga sp., Hydrotaea sp., Fannia scalaris, Piophila sp., Megaselia scalaris) were evaluated for their capability to identify correctly the species. Three concatenated sequences were obtained combining the four genes in order to verify if longer sequences increase the probability of a correct identification. The obtained results showed that this rule does not work for the species L. caesar and L. illustris. Future works on other DNA regions are suggested to solve this taxonomic issue.

Species identification is a crucial step in forensic entomology. In several cases the calculation of the larval age allows the estimation of the minimum Post-Mortem Interval (mPMI). A correct identification of the species is the first step for a correct mPMI estimation. To overcome the difficulties due to the morphological identification especially of the immature stages, a molecular approach can be applied. However, difficulties in separation of closely related species are still an unsolved problem. Sequences of 4 different genes (COI, ND5, EF-1α, PER) of 13 different fly species collected during forensic experiments (Calliphora vicina, Calliphora vomitoria, Lucilia sericata, Lucilia illustris, Lucilia caesar, Chrysomya albiceps, Phormia regina, Cynomya mortuorum, Sarcophaga sp., Hydrotaea sp., Fannia scalaris, Piophila sp., Megaselia scalaris) were evaluated for their capability to identify correctly the species. Three concatenated sequences were obtained combining the four genes in order to verify if longer sequences increase the probability of a correct identification. The obtained results showed that this rule does not work for the species L. caesar and L. illustris. Future works on other DNA regions are suggested to solve this taxonomic issue. [ABSTRACT FROM AUTHOR]

Sugar beet is widely grown throughout the world and represents the second largest crop used to produce sugar. Root rot in sugar beet, caused by Fusarium, significantly reduces yield, juice purity, and sugar concentration. Here, 307 Fusarium isolates were collected from sugar beet roots exhibiting typical root rot symptoms in eight provinces or autonomous regions of China from 2009 to 2012. Based on morphological characteristics and sequence data of the internal transcribed spacer (ITS) region of ribosomal DNA (rDNA) and the translation elongation factor 1α (EF-1α), Fusarium oxysporum (38.4%) was identified as the most prevalent species, followed by F. solani (20.9%), and F. equiseti (18.9%). These three species were widely distributed in all eight of the provinces and autonomous regions. F. tricinctum (5.9%), F. brachygibbosum (4.6%), F. redolens (3.3%), F. proliferatum (3.3%), F. graminearum (2.3%), F. verticillioides (1.6%), F. nygamai (0.7%), and F. culmorum (0.3%) were less frequently obtained. Of the 307 Fusarium isolates, 117 representing different species and geographic locations were demonstrated to cause tip rot and vascular discoloration in sugar beet roots, with disease incidence ranging from 84.2 to 100.0% and disease index ranging from 41.94 to 75.83. This is the first detailed report of Fusarium species, in particular F. tricinctum, F. brachygibbosum, F. redolens, F. proliferatum, F. nygamai, and F. culmorum, causing sugar beet root rot in China. [ABSTRACT FROM AUTHOR]

European Lepidocyrtus species are usually grouped into five species-groups within two subgenera, Lepidocyrtus s.s. and Lanocyrtus, defined by the distribution of scale covering and dorsal head and body macrochaetotaxy. The discovery of several Lepidocyrtus populations with morphological characters intermediate between two species-groups suggested the need for the present study to test whether molecular data provide support to these groups. The morphology and gene sequences of 110 specimens belonging to 19 species of European Lepidocyrtus have been studied. Our molecular results are congruent with the distribution of the European species into the five groups established in the literature on the basis of morphological characters, but also indicated that subgenus Lanocyrtus is paraphyletic while subgenus Lepidocyrtus s.s. is monophyletic. A new species, Lepidocyrtus intermedius, is described, and a redefinition of European species-groups is proposed based on chaetotaxy. [ABSTRACT FROM AUTHOR]

A new plasmodiocarpic and sporocarpic species of myxomycete in the genus Physarum is described and illustrated. This new species appeared on decayed leaves and remains of succulent plants ( Agave , Opuntia , Yucca ) growing in arid zones. It differs from all other species in the genus in having polyhedral spores linked in chains like a string of beads, a unique feature within all known myxomycetes. Apart from detailed morphological data, partial sequences of both the small-subunit ribosomal RNA and elongation factor 1-alpha genes, generated from four isolates collected in two distant regions, i.e., Mexico and Canary Islands, are also provided in this study. Combined evidence supports the identity of the specimens under study as a new species. [ABSTRACT FROM AUTHOR]

Soybean ( Glycine max (L.) Merr.) has excellent potential as an alternative crop to canola in southern Alberta farming systems. However, soybean is susceptible to Fusarium root rot, which usually results in the occurrence of dead or dying plants in mid-to-late summer and severe reductions in yield. A total of 102 isolates identified as Fusarium were recovered from diseased soybean root samples collected from central and southern Alberta from 2011 to 2013. Ten species of Fusarium were identified, with F. acuminatum as the predominant species (31 out of 102 isolates, 30.39%), followed by F. equiseti (16.67%), F. culmorum (13.73%), F. avenaceum (10.78%), F. oxysporum (8.82%), F. redolens (7.84%), F. torulosum (4.90%), F. tricinctum (2.94%), F. commune (1.96%) and F. proliferatum (0.98%). This is the first report of F. commune , F. redolens and F. torulosum causing root rot in soybean in Canada. Phylogenetic analyses based on sequence data from the translation elongation factor 1-α (EF-1α) and the internal transcribed spacer (ITS) region were used to evaluate genetic variation and, in conjunction with morphological characters, for species identification. All of the Fusarium isolates were able to infect soybean, although some exhibited varying levels of aggressiveness. [ABSTRACT FROM AUTHOR]

The superfamily Psylloidea (Hemiptera: Sternorrhyncha) lacks a robust multigene phylogeny. This impedes our understanding of the evolution of this group of insects and, consequently, an accurate identification of individuals, of their plant host associations, and their roles as vectors of economically important plant pathogens. The conserved nuclear gene elongation factor-1 alpha (EF-1α) has been valuable as a higher-level phylogenetic marker in insects and it has also been widely used to investigate the evolution of intron/exon structure. To explore evolutionary relationships among Psylloidea, polymerase chain reaction amplification and nucleotide sequencing of a 250-bp EF-1α gene fragment was applied to psyllids belonging to five different families. Introns were detected in three individuals belonging to two families. The nine genera belonging to the family Aphalaridae all lacked introns, highlighting the possibility of using intron presence/absence as a diagnostic tool at a family level. When paired with cytochrome oxidase I gene sequences, the 250 bp EF-1α sequence appeared to be a very promising higher-level phylogenetic marker for psyllids. [ABSTRACT FROM AUTHOR]

A new species of Didymium (Myxomycetes), D. azorellae, isolated from plant debris in a moist chamber, collected during studies of cold arid areas of Argentina and Peru, is described. It can be distinguished by its small size, the tightly packed layer of lime crystals on the peridium, the very scant, or absent, capillitium, and the unique spore ornamentation, especially by scanning electron microscopy. The species developed on dead leaves of cushion plants growing in the extremely harsh environments of the central Andean puna at almost 5000 m elevation and the Andino- Patagonian steppe. Morphology was examined with scanning electron microscopy and light microscopy, and micrographs of relevant details are included here. In order to confirm the identity of the new species described in this paper, a molecular study was conducted based on partial sequences of both the 18S rRNA and the elongation factor 1-alpha gene. Phylogenetic analysis including two specimens from different countries of the newly described species, Didymium azorellae, strongly supports the grouping of these specimens as a separate clade from the rest of the analyzed species. [ABSTRACT FROM AUTHOR]

Avian coccidiosis is caused by multiple species of the apicomplexan protozoan, Eimeria , and is one of the most economically devastating enteric diseases for the poultry industry worldwide. Host immunity to Eimeria infection, however, is relatively species-specific. The ability to immunize chickens against different species of Eimeria using a single vaccine will have a major beneficial impact on commercial poultry production. In this paper, we describe the molecular cloning, purification, and vaccination efficacy of a novel Eimeria vaccine candidate, elongation factor-1α (EF-1α). One day-old broiler chickens were given two subcutaneous immunizations one week apart with E. coli -expressed E. tenella recombinant (r)EF-1α protein and evaluated for protection against challenge infection with E. tenella or E. maxima . rEF-1α-vaccinated chickens exhibited increased body weight gains, decreased fecal oocyst output, and greater serum anti-EF-1α antibody levels following challenge infection with either E. tenella or E. maxima compared with unimmunized controls. Vaccination with EF-1α may represent a new approach to inducing cross-protective immunity against avian coccidiosis in the field. [ABSTRACT FROM AUTHOR]

Widespread and severe wilt of cauliflower (Brassica oleraceavar.botrytisL.) plants was observed during 2014–2016 in Shandong Province, China. Symptoms of the disease included wilted leaves, brown stems and root rot. Infected cauliflower plants eventually wilted and died within 2 months. A fungus was consistently isolated from diseased tissues and pathogenicity tests showed it was the causal agent, producing similar symptoms as those observed in the field. Based on morphological characteristics and molecular analysis of the partial sequences of internal transcribed spacer rDNA (ITS-rDNA), the translation elongation factor 1α (EF-1α) and the mitochondrial small subunit ribosomal (mtSSU rDNA), the pathogen was identified asFusarium equiseti(Corda) Sacc. This is the first report ofF. equiseticausing cauliflower wilt. [ABSTRACT FROM AUTHOR]

Symptoms of a new vascular wilt were observed on several plants of Papaver nudicaule cultivated at the Regional Institute for Floriculture in Sanremo and in a nursery near Ventimiglia, Liguria region, Northern Italy. Morphology and ITS sequence analysis characterize the pathogen as Fusarium oxysporum. To identify the forma specialis, eight isolates obtained from infected tissues were used for a phylogenetic analysis based on translation elongation factor 1-α (EF-1α) gene and four polygalacturonase genes (Pg1, Pg5, Pgx1 and Pgx4). After amplification by PCR, the gene sequences were aligned with corresponding sequences from other formae speciales of Fusarium oxysporum obtained from GenBank databases in order to build phylogenetic trees. Results obtained for each genomic region showed that the isolates derived from P. nudicaule form a unique group well separated from other formae speciales. To our knowledge, this is the first report of F. oxysporum on P. nudicaule and together with the phylogenetic analysis and positive pathogenicity tests permits us to introduce a new forma specialis named F. oxysporum f. sp. papaveris.

analysis based on the ITS region confirmed the pathogen as Fusarium oxysporum. In order to identify the forma specialis, thirteen isolates obtained from infected tissues were used for phylogenetic analysis based on four polygalacturonase genes (Pg1, Pg5, Pgx1 and Pgx4) together with the translation elongation factor 1-alpha (EF-1alpha) gene. Sequences generated in this study were aligned with other formae speciales of Fusarium oxysporum from GenBank to construct phylogenetic trees. Eleven isolates of a new forma specialis, Fusarium oxysporum f. sp. crassulae described on Crassula ovata, were added to the analysis based on Pg5 and Pgx1 genes. The results obtained for each genomic region showed that the isolates derived from E. agavoides are in a unique group well separated from other formae speciales already described. The first report of F. oxysporum on E. agavoides together with the results obtained in this study suggest a new forma specialis, here named F. oxysporum f. sp. echeveriae.

The evolution of a nuclear Wingless gene was investigated and its utility for inferring the phylogenetic relationship within Glyphodes moths was assessed by comparing with other three genes namely, COI, COII, and EF-1á. The results show that the bias of base compositions in Wingless (C: 0.19) is the lowest among those in COI, COII, and EF-1á. The averages of nucleotide sequence divergences for comparison between groups based on the Wingless were the highest. While substitutions in Wingless and EF-1á genes were not saturated at the divergence of the species groups, COI and COII genes attained saturation at those levels. The phylogenetic analysis based on Wingless solely show that this gene was very useful to resolve the relationships between groups but gave a poor resolution at the specific level, i.e. the relationships within group 1 was not resolved. Combination of all data supports the phylogenetic hypothesis based on morphological data. Glyphodes falls into three species groups: group 2 branched off first then followed by groups 1 and 3.

The response of entomopathogenic mitosporic ascomycete (EMAs) to abiotic stresses might be adapted to the microhabitats in which they inhabit. In phylloplane, these organisms are more exposed to such stresses than they are in soil, which may have led to adaptation to this environment. In the present work, we investigate whether Beauveria bassiana genotype or isolation habitat, i.e., soil or phylloplane, within the same geographic area influences their responses to key environmental stresses, such as temperature, moisture and ultraviolet radiation (UV-B), which can affect their successful use in microbial control. Twenty isolates of B. bassiana obtained from the soil and phylloplane in two ecosystems from southern Spain (holm oak dehesa and a reforested area) were selected to study the population distribution of these isolates and evaluate their thermal, humidity and UV-B requirements. Molecular characterization was conducted by using elongation factor-1α (EF-1α), the intergenic nuclear region Bloc and 15 microsatellite primers. The cluster analysis based on concatenated EF-1α and Bloc sequences grouped the 20 isolates into five clades within B. basiana , with Clades a, b, d and e containing both soil and phylloplane isolates and Clade c including three phylloplane isolates. The dendrogram and the minimal spanning network generated from the genetic distances among multilocus genotypes showed four divergent groups corresponding to the five clades obtained based on the sequence data (Clades b and d were represented in the same group), with a high degree of shared alleles within groups and few alleles shared among groups. Although no relationship was found between MLG and the habitat (soil or phylloplane) of isolation, isolates grouped into Clade c, all of which were collected from phylloplane, formed a separate group of MLGs. To investigate our hypothesis, the responses to temperature (germination and colony growth evaluated in the range 15–35 °C), water activity (conidia germination evaluated against values of a w between 1 and 0.862) and UV-B exposure (conidia exposed to 920 or 1200 mW m −2 for 2, 4 or 6 h) of the soil and phylloplane isolates from the five clades were investigated. No associations of isolate-specific genetic or physiological characteristics with isolate habitat, i.e., soil or phylloplane, were found. These results provide no support for the hypothesis that EMAs strains from the phylloplane have evolved to resist unfavourable environmental conditions. [ABSTRACT FROM AUTHOR]

Fusarium wilt is a disease that restricts carnation ( Dianthus caryophyllus L.) yield worldwide. Efficacies in reducing the Fusarium wilt of carnation (FWC), of various types of organic amendments (fresh or pelletized poultry manure, pelletized Brassica carinata and olive residue compost) combined with soil solarization, were compared in two biennial field trials conducted in a greenhouse with a history of carnation monoculture over 8 years. Soil treatments combining organic amendments and soil solarization significantly reduced disease incidence (86–99%) and increased the number of commercial carnation stems by 5–9 times compared to non-treated plots. Twenty-one Fusarium spp. isolates, with different colony morphologies were recovered from soil samples taken in the greenhouse, before the application of treatments in June 2013. Nineteen of them were morphological and molecularly characterized. Additionally, two pathogenicity tests with 17 isolates recovered from greenhouse soils and two isolates recovered from organic amendments were performed. Fusarium species associated with carnation cultivation were identified as Fusarium oxysporum (43%) , Fusarium proliferatum (24%), and Fusarium solani (33%). The phylogenetic analysis of the translation elongation factor 1 alpha ( EF-1α ) region distinguished highly aggressive isolates of F. oxysporum f. sp. dianthi , from low aggressive isolates. The pathogenicity tests showed that FWC has a complex etiology, with several Fusarium spp. identified as causal agents. F. proliferatum and F. solani are associated with carnation wilt for the first time in Spain. [ABSTRACT FROM AUTHOR]

Molecular systematics is a remarkable approach for understanding the taxonomic traits and allows the exploration of the inter-population dynamics of several species in the Triatominae subfamily that are involved in Trypanosoma cruzi transmission. Compared to other relevant species that transmit vector-borne diseases, such as some species of the Diptera, there are relatively few nuclear genetic markers available for systematic studies in the Triatominae subfamily. Molecular systematic studies performed on Triatominae are based on mitochondrial gene fragments and, less frequently, on nuclear ribosomal genes or spacers. Due to the fact that these markers can occasionally present problems such as nuclear mitochondrial genes (NUMTs) or intra-genomic variation for high gene copy numbers, it is necessary to use additional nuclear markers to more reliably address the molecular evolution of Triatominae. In this study, we performed phylogenetic analysis using the nuclear elongation factor-1 alpha ( EF-1α ) gene in individuals from 12 species belonging to the Triatomini and Rhodniini tribes. Genetic diversities and phylogenetic topologies were compared with those obtained for the mitochondrial 16S rRNA and Cytochrome b ( cyt b ) genes, as well as for the D2 variable region of the ribosomal 28S rRNA gene. These results indicate that the EF-1α marker exhibits an intermediate level of diversity compared to mitochondrial and nuclear ribosomal genes, and that phylogenetic analysis based on EF-1α is highly informative for resolving deep phylogenetic relationships in Triatominae, such as tribe or genera. [ABSTRACT FROM AUTHOR]

Skippers of the tribe Baorini are evidently a monophyletic group in the subfamily Hesperiinae. In this study, a new Baorini member Tsukiyamaia albimacula gen. n. et sp. n. is described from north Myanmar, southwest China and north Vietnam. Despite its peculiar and striking wing-pattern, this new genus has some important characters of Baorini, such as a broad and bifid uncus and a well-developed gnathos. Based on an analysis of male genitalia and the molecular phylogenies inferred from both mitochondrial and nuclear genes (28 taxa, total aligned length: 2968 bp), it is proposed that the genus Tsukiyamaia is closely related to the genus Polytremis, which has high species diversity in China. This study not only describes a new skipper but also highlights that Tsukiyamaia is important in clarifying phylogenetic relationship of Polytremis and its allies. [ABSTRACT FROM AUTHOR]

It is reported that the expression level of EF-1α in Colpoda cucullus Nag-1 is markedly enhanced within several hours after the onset of encystment induction. In this study, the Colpoda strain (stock EQ-1) known to promptly encyst also showed early EF-1α expression while the strain (stock ES-1) known to show prolonged encystment also showed delayed EF-1α expression. In cells in which EF-1α is silenced by feeding RNAi, the cyst formation was prolonged, but normal cyst walls were formed. These results suggest that Colpoda EF-1α is involved in the early morphogenetic events of the resting cyst formation by accelerating protein translation or cytosleletal dynamics such as microtubule disintegration. [ABSTRACT FROM AUTHOR]

Previously, we identified five Leishmania mexicana antigens reacting with antibodies from cutaneous leishmaniasis patients, designated on the basis of their molecular weights as p26 (pI 7.8), p27 (pI 8.1), p28 (pI 8.6), p29 (pI 8.5), and p31 (pI 9.0). Among these antigens, p29 was most strongly recognized by the antibodies. Thereafter, p29 was identified as elongation factor-1α (EF-1α) of Leishmania mexicana through mass spectrometry analysis and western blot using a commercial antibody that reacted with EF-1α from different species. Our results showed that the p29 antigen of Leishmania mexicana is EF-1α. [ABSTRACT FROM AUTHOR]

In 2011, a new Fusarium wilt of Papaver nudicaule was observed in a commercial nursery near Ventimiglia (Imperia province, northern Italy) as well as in the Regional Institute of Floriculture (I.R.F.) of Sanremo (Imperia province, northern Italy). Molecular analysis enabled identification of the causal agent as a new forma specialis called Fusarium oxysporum f. sp. papaveris. The origin of the infection was found on P. nudicaule seeds. However, disinfection with sodium hypochlorite was able to eliminate the pathogen infection. Virulence of ten isolates obtained from seeds was evaluated by pathogenicity assay. The more virulent strains were analyzed by phylogenetic analysis on the basis of the EF-1α, pg1 and pgx4 genes. Sequences obtained by PCR amplification were aligned with other formae speciales of Fusarium oxysporum from the GenBank and used in the construction of the phylogenetic trees. Seed infections have been observed in the case of many vegetable crops; however, this phenomenon has been less studied in the case of ornamental crops. As a consequence of seed exchanges or transmission via infected seeds, new and old pathogenic species of Fusarium are continuously introduced into new areas and production systems. [ABSTRACT FROM AUTHOR]

Symptoms of a new vascular wilt were observed on several plants of Papaver nudicaule cultivated at the Regional Institute for Floriculture in Sanremo and in a nursery near Ventimiglia, Liguria region, Northern Italy. Morphology and ITS sequence analysis characterize the pathogen as Fusarium oxysporum. To identify the forma specialis, eight isolates obtained from infected tissues were used for a phylogenetic analysis based on translation elongation factor 1-α (EF-1α) gene and four polygalacturonase genes (Pg1, Pg5, Pgx1 and Pgx4). After amplification by PCR, the gene sequences were aligned with corresponding sequences from other formae speciales of Fusarium oxysporum obtained from GenBank databases in order to build phylogenetic trees. Results obtained for each genomic region showed that the isolates derived from P. nudicaule form a unique group well separated from other formae speciales. To our knowledge, this is the first report of F. oxysporum on P. nudicaule and together with the phylogenetic analysis and positive pathogenicity tests permits us to introduce a new forma specialis named F. oxysporum f. sp. papaveris. [ABSTRACT FROM AUTHOR]

A non-papillate, heterothallic Phytophthora species first isolated in 2001 and subsequently from symptomatic roots, crowns and stems of 33 plant species in 25 unrelated botanical families from 13 countries is formally described here as a new species. Symptoms on various hosts included crown and stem rot, chlorosis, wilting, leaf blight, cankers and gumming. This species was isolated from Australia, Hungary, Israel, Italy, Japan, the Netherlands, Norway, South Africa, Spain, Taiwan, Turkey, the United Kingdom and United States in association with shrubs and herbaceous ornamentals grown mainly in greenhouses. The most prevalent hosts are English ivy (Hedera helix) and Cistus (Cistus salvifolius). The association of the species with acorn banksia (Banksia prionotes) plants in natural ecosystems in Australia, in affected vineyards (Vitis vinifera) in South Africa and almond (Prunus dulcis) trees in Spain and Turkey in addition to infection of shrubs and herbaceous ornamentals in a broad range of unrelated families are a sign of a wide ecological adaptation of the species and its potential threat to agricultural and natural ecosystems. The morphology of the persistent non-papillate ellipsoid sporangia, unique toruloid lobate hyphal swellings and amphigynous antheridia does not match any of the described species. Phylogenetic analysis based on sequences of the ITS rDNA, EF-1α, and β-tub supported that this organism is a hitherto unknown species. It is closely related to species in ITS clade 7b with the most closely related species being P. sojae. The name Phytophthora niederhauserii has been used in previous studies without the formal description of the holotype. This name is validated in this manuscript with the formal description of Phytophthora niederhauserii Z.G. Abad et J.A. Abad, sp. nov. The name is coined to honor Dr John S. Niederhauser, a notable plant pathologist and the 1990 World Food Prize laureate. [ABSTRACT FROM AUTHOR]

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The invasive Asian ambrosia beetle Euwallacea sp. (Coleoptera, Scolytinae, Xyleborini) and a novel Fusarium sp. that it farms in its galleries as a source of nutrition causes serious damage to more than 20 species of live trees and pose a serious threat to avocado production (Persea americana) in Israel and California. Adult female beetles are equipped with mandibular mycangia in which its fungal symbiont is transported within and from the natal galleries. Damage caused to the xylem is associated with disease symptoms that include sugar or gum exudates, dieback, wilt and ultimately host tree mortality. In 2012 the beetle was recorded on more than 200 and 20 different urban landscape species in southern California and Israel respectively. Euwallacea sp. and its symbiont are closely related to the tea shot-hole borer (E. fornicatus) and its obligate symbiont, F. ambrosium occurring in Sri Lanka and India. To distinguish these beetles, hereafter the unnamed xyleborine in Israel and California will be referred to as Euwallacea sp. IS/CA. Both fusaria exhibit distinctive ecologies and produce clavate macroconidia, which we think might represent an adaption to the species-specific beetle partner. Both fusaria comprise a genealogically exclusive lineage within Clade 3 of the Fusarium solani species complex (FSSC) that can be differentiated with arbitrarily primed PCR. Currently these fusaria can be distinguished only phenotypically by the abundant production of blue to brownish macroconidia in the symbiont of Euwallacea sp. IS/CA and their rarity or absence in F. ambrosium. We speculate that obligate symbiosis of Euwallacea and Fusarium, might have driven ecological speciation in these mutualists. Thus, the purpose of this paper is to describe and illustrate the novel, economically destructive avocado pathogen as Fusarium euwallaceae sp. nov. S. Freeman et al. [ABSTRACT FROM AUTHOR]

Species of Botryosphaeriaceae are important fungal pathogens of mango worldwide. A survey of 11 mango orchards located in the provinces of Catania, Messina, Palermo and Ragusa (Sicily, southern Italy), resulted in the isolation of a large number (76) of Neofusicoccum isolates associated with decline and dieback symptoms. Isolates were identified based on morphology and DNA sequence data analyses of the internal transcribed spacer region of the nrDNA and partial translation of the elongation factor 1-alpha gene regions. Two species of Neofusicoccum were identified, which included N. parvum and N. australe, the former of which was the dominant species. The high incidence in local orchards and the pathogenicity results indicate that N. parvum and N. australe are important pathogens of mango in Sicily where they may significantly limit mango production. [ABSTRACT FROM AUTHOR]

Background: Elongation factor-1α (EF-1α) and elongation factor-like (EFL) proteins are functionally homologous to one another, and are core components of the eukaryotic translation machinery. The patchy distribution of the two elongation factor types across global eukaryotic phylogeny is suggestive of a ?differential loss? hypothesis that assumes that EF-1α and EFL were present in the most recent common ancestor of eukaryotes followed by independent differential losses of one of the two factors in the descendant lineages. To date, however, just one diatom and one fungus have been found to have both EF-1α and EFL (dual-EF-containing species). Results: In this study, we characterized 35 new EF-1α/EFL sequences from phylogenetically diverse eukaryotes. In so doing we identified 11 previously unreported dual-EF-containing species from diverse eukaryote groups including the Stramenopiles, Apusomonadida, Goniomonadida, and Fungi. Phylogenetic analyses suggested vertical inheritance of both genes in each of the dual-EF lineages. In the dual-EF-containing species we identified, the EF-1α genes appeared to be highly divergent in sequence and suppressed at the transcriptional level compared to the co-occurring EFL genes. Conclusions: According to the known EF-1α/EFL distribution, the differential loss process should have occurred independently in diverse eukaryotic lineages, and more dual-EF-containing species remain unidentified. We predict that dual-EF-containing species retain the divergent EF-1α homologues only for a sub-set of the original functions. As the dual-EF-containing species are distantly related to each other, we propose that independent re-modelling of EF-1α function took place in multiple branches in the tree of eukaryotes. [ABSTRACT FROM AUTHOR]

Mulberries are cultivated for different purposes: for feeding larvae of silkworm,Bombyx mori, as fresh and dry food resources, in wood instrument industry, in pharmaceutical industry and as outdoor ornamental trees in Iran. In recent years, twig and branch canker disease symptoms have been noticed on mulberry trees in northwestern parts of Iran.Diplodiaisolates were repeatedly recovered from symptomatic tissues. Based on cultural and morphological features, the isolates were identified asDiplodia seriata. The identity of the isolates was further confirmed using sequence data from internal transcribed spacer (ITS)-rDNA and ef-1α gene. A phylogenetic analysis using ITS sequence data clustered the isolates obtained in this study together with knownDiplodia seriataisolates of other woody hosts from GenBank. Inoculation studies carried out on white mulberry twigs using an excised shoot method revealed that the isolates are pathogenic on this host.D. seriatahave been reported from other woody host plant species such asJuglans nigraandVitis viniferain Iran, however, to the best of our knowledge, the occurrence ofD. seriataon mulberry trees is new for Iran. The distribution and reaction of differentMorusspp. toD. seriataremain to be studied. [ABSTRACT FROM PUBLISHER]

Background: Climatic oscillations are among the long-term factors shaping the molecular features of animals and plants and it is generally supposed that the rear edges (i.e., the low-latitude limits of distribution of any given specialised species) situated closer to glacial refugia are vital long-term stores of genetic diversity. In the present study, we compared the genetic structure of several populations of an endangered and obligate myrmecophilous butterfly (Maculinea arion) from two distinct and geographically distant parts of its European distribution (i.e., Italy and Poland), which fully represent the ecological and morphological variation occurring across the continent. Results: We sequenced the COI mitochondrial DNA gene (the 'barcoding gene') and the EF-1α nuclear gene and found substantial genetic differentiation among M. arion Italian populations in both markers. Eleven mtDNA haplotypes were present in Italy. In contrast, almost no mtDNA polymorphisms was found in the Polish M. arion populations, where genetic differentiation at the nuclear gene was low to moderate. Interestingly, the within-population diversity levels in the EF-1α gene observed in Italy and in Poland were comparable. The genetic data did not support any subspecies divisions or any ecological specialisations. All of the populations studied were infected with a single strain of Wolbachia and our screening suggested 100% prevalence of the bacterium. Conclusions: Differences in the genetic structure of M. arion observed in Italy and in Poland may be explained by the rear edge theory. Although we were not able to pinpoint any specific evolutionarily significant units, we suggest that the Italian peninsula should be considered as a region of special conservation concern and one that is important for maintaining the genetic diversity of M. arion in Europe. The observed pattern of mtDNA differentiation among the populations could not be explained by an endosymbiotic infection. [ABSTRACT FROM AUTHOR]

Abstract: Fusarium equiseti and Fusarium acuminatum are toxigenic species that contaminate cereal crops from diverse climatic regions. They are common in Spanish cereals. The information available on their phylogenetics and toxigenic profiles is, however, insufficient to assist risk evaluation. In this work, phylogenetic analyses were performed using partial sequences of the translation elongation factor gene (EF-1α) of F. equiseti and F. acuminatum strains isolated from barley and wheat from Spain and other countries. The Northern and Southern European F. equiseti strains largely separated into two phylogenetically distinct clusters. This suggests the existence of two distinct populations within this species, explaining its presence in these regions of markedly different climate. Production of type A and B trichothecenes by the Spanish strains, examined in wheat cultures using a multitoxin analytical method, indicated that F. equiseti could produce deoxynivalenol and nivalenol and other trichothecenes, at concentrations that might represent a significant risk of toxin contamination for Southern European cereals. F. acuminatum showed low intraspecific genetic variability and 58% of the strains could produce deoxynivalenol at low level. Neither species was found to produce T-2 or HT-2 toxins. The present results provide important phylogenetic and toxigenic information essential for the accurate prediction of toxigenic risk. [Copyright &y& Elsevier]

The present study was conducted to better understand how the phylogenetic diversity of true morels (Morchella) in Turkey compares with species found in other regions of the world. The current research builds on our recently published surveys of 10 Turkish provinces and the northern hemisphere in which DNA sequence data from 247 and 562 collections respectively were analyzed phylogenetically. Herein we report on phylogenetic analyses of 243 additional collections made in spring 2009 and 2010 from eight additional provinces in the Aegean, Black Sea, central Anatolia, eastern Anatolia and Marmara regions of Turkey. Our analysis revealed that five species within the Esculenta clade (yellow morels) and 15 species within the Elata clade (black morels) were present in Turkey. Our preliminary results also indicate that M. anatolica, recently described from a collection in Muğla province in the Aegean region of Turkey, is a closely related sister of M. rufobrunnea; these two species comprise a separate evolutionary lineage from the Esculenta and Elata clades. Nine species of Morchella currently are known only from Turkey, four species were present in Turkey and other European countries and seven species might have been introduced to Turkey anthropogenically. Three of the putatively exotic species in Turkey appear to be endemic to western North America; they are nested within a clade of fire-adapted morels that dates to the late Oligocene, 25 000 000 y ago. Our results indicate that there are roughly twice as many Morchella species in Turkey compared with the other regions of Europe sampled. Knowledge of Morchella species diversity and their biogeographic distribution are crucial for formulating informed conservation policies directed at preventing species loss and ensuring that annual morel harvests are sustainable and ecologically sound. [ABSTRACT FROM AUTHOR]

We constructed several multilocus DNA sequence datasets to assess the phylogenetic diversity of insecticolous fusaria, especially focusing on those housed at the Agricultural Research Service Collection of Entomopathogenic Fungi (ARSEF), and to aid molecular identifications of unknowns via the FUSARIUM-ID and Fusarium MLST online databases and analysis packages. Analyses of a 190-taxon, two-locus dataset, which included 159 isolates from insects, indicated that: (i) insect-associated fusaria were nested within 10 species complexes spanning the phylogenetic breadth of Fusarium, (ii) novel, putatively unnamed insecticolous species were nested within 8/10 species complexes and (iii) Latin binomials could be applied with confidence to only 18/58 phylogenetically distinct fusaria associated with pest insects. Phylogenetic analyses of an 82-taxon, three-locus dataset nearly fully resolved evolutionary relationships among the 10 clades containing insecticolons fusaria. Multilocus typing of isolates within four species complexes identified surprisingly high genetic diversity in that 63/65 of the fusaria typed represented newly discovered haplotypes. The DNA sequence data, together with corrected ABI sequence chromatograms and alignments, have been uploaded to the following websites dedicated to identifying fusaria: FUSARIUM-ID (http://isolate.fusariumdb. org) at Pennsylvania State University's Department of Plant Pathology and Fusarium MLST (http://www. cbs.knaw.nl/fusarium) at the Centraalbureau voor Schimmelcultures (CBS-KNAW) Fungal Biodiversity Center [ABSTRACT FROM AUTHOR]