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Environmental DNA (eDNA) analysis can facilitate surveillance of invasive aquatic plant's distribution. However, it is still questionable how accurately eDNA concentration reflects and predicts aquatic plant abundance. Although previous studies investigated relationships between aquatic plant eDNA concentration and their abundance in freshwater environments, the conclusions were not consistent between the studies. Here, a systematic literature search was conducted to summarize previous findings and meta-analyze the relationships between eDNA concentration and aquatic plant abundance. Hierarchical random-effect meta-analyses showed significant positive, but weak, relationships between them (r = 0.45 in average), meaning that eDNA concentration accounted for approximately 20% of the observed variation in plant abundance. Additionally, the relationships tended to be rather stronger in the field than in the laboratory environments, which may be attributed to limited quantifiability and species specificity of plant coverage as abundance metrics, heterogeneous dispersion of plant eDNA particles, and phenology-dependent eDNA production from plant bodies. The finding indicates that aquatic plant eDNA particles could reflect more regional (but not local) abundance, and thus, eDNA-based abundance estimation might be more appropriate at a broader scale (i.e., lower spatial resolution). Further studies focusing on various environmental parameters and plant ecotypes are needed to clarify the relationship. [ABSTRACT FROM AUTHOR]

The Himalaya and Hengduan Mountains (HDM) are recognized as two global biodiversity hotspots, harboring the world's richest alpine flora. However, to what extent the distribution of alpine plants here is affected by climate change remains largely unknown. Bergenia (Saxifragaceae) are perennial medicinal herbs mainly distributed in the Himalaya-HDM region. In this study, we used bioclimatic data for current and future climate scenarios to assess the impact of climate change on the potential distribution of three Bergenia (Saxifragaceae) species. Our results revealed that the geographical distribution of the studied Bergenia species is primarily influenced by precipitation and elevation. By 2090, the three Bergenia species are expected to show contrasting range changes. The western Himalayan alpine species Bergenia stracheyi is expected to expand its range with 21.93 and 17.36% under the optimistic (SSP1-2.6) and moderate (SSP2-4.5) climate change scenario, respectively, while its distribution will shrink by 5.26% under the pessimistic scenario (SSP5-8.5). The Himalayan mid-elevation species B. ciliata is expected to expand its range from 142.42 to 157.14%. In contrast, the distribution range of the east Himalaya-HDM alpine species B. purpurascens is expected to shrink with 34.88 to 47.24%, with most of the habitats in the southeast chains of the HDM at lower elevation summits being lost. In addition, all three Bergenia species are projected to shift their ranges to higher elevations in response to temperature increases. Overall, we conclude that alpine plants may be more vulnerable to climate change than their congeners at lower elevations, supporting the "nowhere to go" hypothesis. [ABSTRACT FROM AUTHOR]

The presence of Andean plant genera in moist forests of the Brazilian Atlantic Coast has been historically hypothesized as the result of cross-continental migrations starting at the eastern Andean flanks. Here we test hypotheses of former connections between the Atlantic and Andean forests by examining distribution patterns of selected cool and moist-adapted plant arboreal taxa present in 54 South American pollen records of the Last Glacial Maximum (LGM), ca. 19–23 cal ka, known to occur in both plant domains. Pollen taxa studied include Araucaria, Drimys, Hedyosmum, Ilex, Myrsine, Podocarpus, Symplocos, Weinmannia, Myrtaceae, Ericaceae and Arecaceae. Past connectivity patterns between these two neotropical regions as well as individual ecological niches during the LGM were explored by cluster analysis of fossil assemblages and modern plant distributions. Additionally, we examined the ecological niche of 137 plant species with shared distributions between the Andes and coastal Brazil. Our results revealed five complex connectivity patterns for South American vegetation linking Andean, Amazonian and Atlantic Forests and one disjunction distribution in southern Chile. This study also provides a better understanding of vegetation cover on the large and shallow South American continental shelf that was exposed due to a global sea level drop. [ABSTRACT FROM AUTHOR]

Allium macrostemon Bunge, commonly referred to as "no-biru" in Japan, is a widespread wild onion species found across the country. Despite being deeply entwined in ancient Japanese culture, it remains an underutilized crop in Japan. Determining the origins of its domestic populations and understanding their genetic composition is crucial to highlighting the plant's historical significance in Japan. This study aims to bridge this knowledge gap by examining the genetic diversity of 47 A. macrostemon samples from various regions in Japan using RAD-Seq. Our analyses distinguished unique population structures, dividing the samples into three distinct groups: A, B, and C. Notably, groups A and B showed clear evidence of bulb propagation, while group C did not. Group C formed four subgroups: C1, C2, C3, and C4. Hybridization between subgroup C1 and either group A, B, or both, resulted in the emergence of subgroups C2, C3, and C4. Thus, groups A, B, and C1 are posited as the ancestral populations. Additionally, our morphological observations indicated distinct differences among these three groups. Our findings also suggest that human migration may have influenced the plant's distribution, hinting at active usage in the past that later waned, causing its current underutilized status. [ABSTRACT FROM AUTHOR]

In the northern forelands of the Alps, farmers report an increase of Jacobaea aquatica in production grasslands. Due to its toxicity, the species affects grassland productivity and calls for costly control measures. We are investigating the extent to which management practices or climatic factors are responsible for the increase of the species and how the situation will change due to climate change. We tested for effects of management intensity, fertilization, agri-environmental measures, and soil disturbance, and modeled the occurrence of the species under rcp4.5 and rcp8.5 scenarios. The main determinants of the occurrence of the species are soil type and summer rainfall. A high risk is associated with wet soils and > 400 mm of rain between June and August; an influence of the management-related factors could not be detected. Under the climate-change scenarios, the overall distribution decreases and shifts to the wetter alpine regions. Thus, the current increase is rather a shift in the occurrence of the species due to the altered precipitation situation. Under future climatic conditions, the species will decline and retreat to higher regions in the Alps. This will decrease the risk of forage contamination for production grassland in the lowlands. [ABSTRACT FROM AUTHOR]

Allium macrostemon Bunge, commonly referred to as "no-biru" in Japan, is a widespread wild onion species found across the country. Despite being deeply entwined in ancient Japanese culture, it remains an underutilized crop in Japan. Determining the origins of its domestic populations and understanding their genetic composition is crucial to highlighting the plant's historical significance in Japan. This study aims to bridge this knowledge gap by examining the genetic diversity of 47 A. macrostemon samples from various regions in Japan using RAD-Seq. Our analyses distinguished unique population structures, dividing the samples into three distinct groups: A, B, and C. Notably, groups A and B showed clear evidence of bulb propagation, while group C did not. Group C formed four subgroups: C1, C2, C3, and C4. Hybridization between subgroup C1 and either group A, B, or both, resulted in the emergence of subgroups C2, C3, and C4. Thus, groups A, B, and C1 are posited as the ancestral populations. Additionally, our morphological observations indicated distinct differences among these three groups. Our findings also suggest that human migration may have influenced the plant's distribution, hinting at active usage in the past that later waned, causing its current underutilized status. [ABSTRACT FROM AUTHOR]

In the northern forelands of the Alps, farmers report an increase of Jacobaea aquatica in production grasslands. Due to its toxicity, the species affects grassland productivity and calls for costly control measures. We are investigating the extent to which management practices or climatic factors are responsible for the increase of the species and how the situation will change due to climate change. We tested for effects of management intensity, fertilization, agri-environmental measures, and soil disturbance, and modeled the occurrence of the species under rcp4.5 and rcp8.5 scenarios. The main determinants of the occurrence of the species are soil type and summer rainfall. A high risk is associated with wet soils and > 400 mm of rain between June and August; an influence of the management-related factors could not be detected. Under the climate-change scenarios, the overall distribution decreases and shifts to the wetter alpine regions. Thus, the current increase is rather a shift in the occurrence of the species due to the altered precipitation situation. Under future climatic conditions, the species will decline and retreat to higher regions in the Alps. This will decrease the risk of forage contamination for production grassland in the lowlands. [ABSTRACT FROM AUTHOR]

Phelypaea tournefortii (Orobanchaceae) primarily occurs in the Caucasus (Armenia, Azerbaijan, Georgia, and N Iran) and Turkey. This perennial, holoparasitic herb is achlorophyllous and possesses one of the most intense red flowers among all plants worldwide. It occurs as a parasite on the roots of several Tanacetum (Asteraceae) species and prefers steppe and semi-arid habitats. Climate change may affect holoparasites both directly through effects on their physiology and indirectly as a consequence of its effects on their host plants and habitats. In this study, we used the ecological niche modeling approach to estimate the possible effects of climate change on P. tournefortii and to evaluate the effect of its parasitic relationships with two preferred host species on the chances of survival of this species under global warming. We used four climate change scenarios (SSP1-2.6, SSP2-4.5, SSP3-7.0, SSP5-8.5) and three different simulations (CNRM, GISS-E2, INM). We modeled the species' current and future distribution using the maximum entropy method implemented in MaxEnt using seven bioclimatic variables and species occurrence records (Phelypaea tournefortii – 63 records, Tanacetum argyrophyllum – 40, Tanacetum chiliophyllum – 21). According to our analyses, P. tournefortii will likely contract its geographical range remarkably. In response to global warming, the coverage of the species' suitable niches will decrease by at least 34%, especially in central and southern Armenia, Nakhchivan in Azerbaijan, northern Iran, and NE Turkey. In the worst-case scenario, the species will go completely extinct. Additionally, the studied plant's hosts will lose at least 36% of currently suitable niches boosting the range contraction of P. tournefortii. The GISS-E2 scenario will be least damaging, while the CNRM will be most damaging to climate change for studied species. Our study shows the importance of including ecological data in niche models to obtain more reliable predictions of the future distribution of parasitic plants. [ABSTRACT FROM AUTHOR]

As an important food crop in China, changes in suitable areas for rice planting are critical to agricultural production. In this study, the maximum entropy model (MaxEnt) was utilized to pick the main climatic factors affecting single-season rice planting distribution and project the potential changes under RCP4.5 and RCP8.5 scenarios. It was clear that rice planting distribution was significantly affected by annual total precipitation, the accumulated temperature during a period in which daily temperature was ≥ 10 °C, the moisture index, total precipitation during April–September, and continuous days during the period of daily temperature ≥ 18 °C, with their contribution being 97.6%. There was a continuous decrease in the area of good and high suitability for rice planting projected from 2021–2040 to 2061–2080, with a respective value ranging from 1.49 × 106 km2 to 0.93 × 106 km2 under the RCP4.5 scenario and from 1.42 × 106 km2 to 0.66 × 106 km2 under RCP8.5 scenarios. In 2081–2100, there was a bit increase in the area of good and high suitability under the RCP4.5 scenario. The most significant increases in good and high suitability were detected in Northeast China, while obvious decreases were demonstrated in the Yangtze River Basin which might be exposed to extreme temperature threat. The spatial potential planting center was characterized by the largest planting area in 25°N–37°N and 98°E–134°E. The north boundary and center of rice cultivation arose to 53.5°N and 37.52°N, respectively. These potential distributions for single-season rice under future climate change can provide a theoretical basis for optimizing rice planting layout, improving cultivation, and adjusting variety and management systems in response to climate change. [ABSTRACT FROM AUTHOR]

The influence of the Intertropical Convergence Zone (ITCZ) in the emerging South Atlantic region during the late Aptian (Early Cretaceous) is reflected in the spatio-temporal distribution of plant communities recorded in eight Brazilian sedimentary basins. The distribution of the bioclimatic groups of hygrophytes, hydrophytes, tropical lowland flora, upland flora, and xerophytes was quantified using pollen and spores. A predominance of xerophytes from the tropical xerophytic shrubland biome characterized the pre-evaporitic, evaporitic, and post-evaporitic paleoclimatic phases, in particular the evaporitic phase. The region experienced humidity events in the pre-evaporitic and post- evaporitic phases, especially near the paleoequator, where the tropical rainforest biome with two phytophysiognomies (lowland and montane rainforests) prevailed. Increasing humidity had a positive effect on plant diversity. [ABSTRACT FROM AUTHOR]

In the era of anthropocene, global warming tends to alter the distribution range of the plant species. Highly fragile to such changes are the species that are endemic, inhabit higher elevations and show narrow distribution ranges. Predicting and plotting the appropriate suitable habitats and keeping knowledge of how climate change will affect future distribution become imperative for designing effective conservation strategies. In the current study we have used BIOMOD ensemble forecasting to study the current and predict the future potential distribution of Dactylorhiza hatagirea and Rheum webbianum and describe their niche dynamics in Himalayan biodiversity hotspots under climate change scenarios using ecospat R package. Results reveal sufficient internal evaluation metrics with area under curve (AUC) and true skill statistic (TSS) values greater than 0.8 i.e. 0.93 and 0.98 and 0.82 and 0.90 for D. hatageria and R. webbianum respectively, which signifies robustness of the model. Among different bioclimatic variables, bio_1, bio_3, bio_8, bio_14 and bio_15 were the most influential, showing greater impact on the potential distribution of these plant species. Range change analysis showed that both the studied species will show significant contraction of their suitable habitats under future climatic scenarios. Representative Concentration Pathway (RCP) 8.5 for the year 2070, indicate that the suitable habitats could be reduced by about 51.41% and 70.57% for D. hatagirea and R. webbianum respectively. The results of the niche comparisons between the current and future climatic scenarios showed moderate level of niche overlap for all the pairs with D. hatageria showing 61% overlap for current vs. RCP4.5 2050 and R. webbianum reflects 68% overlap for current vs. RCP4.5 2050. Furthermore, the PCA analysis revealed that climatic conditions for both the species vary significantly between current and future scenarios. The similarity and equivalence test showed that the niche between present and future climate change scenarios is comparable but not identical. From the current study we concluded that the influence of climate change on the habitat distribution of these plant species in the Himalayan biodiversity hotspots can be considered very severe. Drastic reduction in overall habitat suitability poses a high risk of species extinction and thereby threatens to alter the functions and services of these fragile ecosystems. Present results can be used by conservationists for mitigating the biodiversity decline and exploring undocumented populations on one hand and by policymakers in implementing the policy of conservation of species by launching species recovery programmes in future on the other. The outcomes of this study can contribute substantially to understand the consequences of climate change in the Himalayan biodiversity hotspots. [ABSTRACT FROM AUTHOR]

The influence of the Intertropical Convergence Zone (ITCZ) in the emerging South Atlantic region during the late Aptian (Early Cretaceous) is reflected in the spatio-temporal distribution of plant communities recorded in eight Brazilian sedimentary basins. The distribution of the bioclimatic groups of hygrophytes, hydrophytes, tropical lowland flora, upland flora, and xerophytes was quantified using pollen and spores. A predominance of xerophytes from the tropical xerophytic shrubland biome characterized the pre-evaporitic, evaporitic, and post-evaporitic paleoclimatic phases, in particular the evaporitic phase. The region experienced humidity events in the pre-evaporitic and post- evaporitic phases, especially near the paleoequator, where the tropical rainforest biome with two phytophysiognomies (lowland and montane rainforests) prevailed. Increasing humidity had a positive effect on plant diversity. [ABSTRACT FROM AUTHOR]

The properties of biomembranes depend on the presence, local structure and relative distribution assumed by the thousands of components it is made of. As for animal cells, plant membranes have been demonstrated to be organized in subdomains with different persistence lengths and times. In plant cells, sitosterol has been demonstrated to confer to phospholipid membranes a more ordered structure while among lipids, glycosphingolipids are claimed to form rafts where they tightly pack with sterols. Glucosylceramides are glycosphingolipids involved in plant signalling and are essential for viability of cells and whole plant. The glucosylceramide-sitosterol structural coupling within PLPC membranes is here investigated by Langmuir films, in silico simulations and neutron reflectometry, unveiling that a strong direct interaction between the two molecules exists and governs their lateral and transversal distribution within membrane leaflets. The understanding of the driving forces governing specific molecules clustering and segregation in subdomains, such as glucosylceramide and sitosterol, have an impact on the mechanical properties of biomembranes and could reflect in the other membrane molecules partitioning and activity. [ABSTRACT FROM AUTHOR]

The relationship between plant species and climatic factors has always been a fundamental issue in plant ecology, and the use of multivariate statistical methods can be effective in revealing the relationship between climatic factors and plant species distribution. Therefore, in this study, climatic factors affecting the distribution of Artemisia sieberi and Artemisia aucheri, widely distributed in Iran, were investigated. For this purpose, 117 climatic factors were used, and to reduce the number of factors and determine the most important effective ones, a factor analysis was used by principal component analysis. The results showed that six factors including heating temperature, spring and summer precipitation, wind, autumn–winter precipitation, and dusty and cloudiness days explained 37.32%, 22.54%, 7.18%, 6.6%, 4.22%, and 4.15% of data variation, respectively. Together these seven factors account for 82% of data variation. The autumn–winter precipitation and heating temperature had the greatest impact on the presence of Artemisia sieberi and Artemisia aucheri, respectively, so that the autumn–winter precipitation was negative in areas where Ar.sieberi is observed. The heating temperature factor is negative in areas where Ar.aucheri is present, while it is positive in areas lacking Ar.aucheri. The study of the effect of environmental factors on Artemisia species distribution is very important in the planning and management of natural resources, and Artemisia is one of the most important plants in the country's rangelands; therefore, the results of this research can be used for practical planning, management, and reclamation of these rangelands. [ABSTRACT FROM AUTHOR]

Mapping the spatial distribution of a plant is a current challenge in ecology. Here, a convolutional neural network (CNN) and 33,798 Sentinel-2 satellite images were used to detect and map forest stands dominated by trees of the genus Pleroma by their magenta-to-deep-purple blossoms in the entire Brazilian Atlantic Forest domain, from June 2016 to July 2020. The Pleroma genus, known for its pioneer behaviour, was detected in an area representing 10.8% of the Atlantic Forest, associated negatively with temperature and positively with elevation, slope, tree cover and precipitation. The detection of another genus by the model, 18% of all the detections contained only pink blooming Handroanthus trees, highlighted that botanical identification from space must be taken with caution, particularly outside the known distribution range of the species. The Pleroma blossom seasonality occurred over a period of ~5–6 months centered on the March equinox and populations with distinct blossom timings were found. Our results indicate that in the Atlantic Forest, the remaining natural forest is less diverse than expected but is at least recovering from degradation. Our study suggests a method to produce ecological-domain scale maps of tree genera and species based on their blossoms that could be used for tree studies and biodiversity assessments. [ABSTRACT FROM AUTHOR]

Alien invasive plants pose a threat to global biodiversity and the cost of control continues to rise. Early detection and prediction of potential risk areas are essential to minimize ecological and socio-economic costs. In this study, the Maxent model was used to predict current and future climatic conditions to estimate the potential global distribution of the invasive plant Xanthium italicum. The model consists of 366 occurrence records (10 repeats, 75% for calibration and 25% for verification) and 10 climate prediction variables. According to the model forecast, the distribution of X. italicum was expected to shrink in future climate scenarios with human intervention, which may be mainly caused by the rise in global average annual temperature. The ROC curve showed that the AUC values of the training set and the test set are 0.965 and 0.906, respectively, indicating that the prediction result of this model was excellent. The contribution rates of annual mean temperature, monthly mean diurnal temperature range, standard deviation of temperature seasonal change and annual average precipitation to the geographical distribution of X. italicum were 65.3%, 11.2%, 9.0%, and 7.7%, respectively, and the total contribution rate was 93.2%. These four variables are the dominant environmental factors affecting the potential distribution of X. italicum, and the influence of temperature is greater than that of precipitation. Through our study on the potential distribution prediction of X. italicum under the future climatic conditions, it has contribution for all countries to strengthen its monitoring, prevention and control, including early warning. [ABSTRACT FROM AUTHOR]

Information obtained from the analysis of dust, particularly biological particles such as pollen, plant parts, and fungal spores, has great utility in forensic geolocation. As an alternative to manual microscopic analysis of dust components, we developed a pipeline that utilizes the airborne plant environmental DNA (eDNA) in settled dust to estimate geographic origin. Metabarcoding of settled airborne eDNA was used to identify plant species whose geographic distributions were then derived from occurrence records in the USGS Biodiversity in Service of Our Nation (BISON) database. The distributions for all plant species identified in a sample were used to generate a probabilistic estimate of the sample source. With settled dust collected at four U.S. sites over a 15-month period, we demonstrated positive regional geolocation (within 600 km2 of the collection point) with 47.6% (20 of 42) of the samples analyzed. Attribution accuracy and resolution was dependent on the number of plant species identified in a dust sample, which was greatly affected by the season of collection. In dust samples that yielded a minimum of 20 identified plant species, positive regional attribution was achieved with 66.7% (16 of 24 samples). For broader demonstration, citizen-collected dust samples collected from 31 diverse U.S. sites were analyzed, and trace plant eDNA provided relevant regional attribution information on provenance in 32.2% of samples. This showed that analysis of airborne plant eDNA in settled dust can provide an accurate estimate regional provenance within the U.S., and relevant forensic information, for a substantial fraction of samples analyzed. [ABSTRACT FROM AUTHOR]

The current research was carried out in Wadi Elkor, one of the Sarawat Mountains regions, which is a special location from an environmental standpoint and one of the only places in Saudi Arabia where a range of Palaearctic flora co-exists with Afrotropical species. The study aimed to determine the floristic composition as well as the effects of slope aspect and elevation on species, life forms, and phytogeographical elements distribution. The study area is located in Wadi Elkor, a valley in the Sarawat Mountains that cuts off the Al-Hada escarpment, 47 km southeast of Makkah City, Saudi Arabia. We conducted the research at three different locations, each with a different elevation and slope aspect. Based on floristic composition, Ward classification moreover Jaccard comparisons were performed. A total of 189 species was discovered, divided into 131 genera and 43 families. The current study identified Argyrolobium rarum Dumme as a new vascular plant in Saudi Arabia's terrestrial flora. In the current study, the Gramineae, Leguminosae, and Compositae families contributed 29% of the total plant species, whereas 14 families were represented by one species each. Solanum was the most numerous genus, with seven species, followed by Acacia and Pulicaria, each with six species, while Commicarpos and Euphorbia, each with four species. At an elevation of 1060 m above sea level, the north facing slope had the most plants, genera, and families. Therophytes had the most species, accounting for 44%, followed by Chamaephytes, which accounted for 26%. Hemicryptophytes accounted for 12% of the total, while phanerophytes accounted for 10%. In the studied area, the bioregional Saharo-Sindian and Sudano-Zambesian groups were the most well-represented (41%). The floristic composition, as well as the distribution of life forms and phytogeographical components, were found to be significantly affected by the elevation and slope aspects. The study showed that slope aspect and elevation both affected the distribution of plant species, with elevation being the most influential of the two variables. [ABSTRACT FROM AUTHOR]

Picrorhiza kurrooa is an endangered medicinal herb which is distributed across the Himalayan region at an altitude between 3000–5000 m above mean sea level. The medicinal properties of P. kurrooa are attributed to monoterpenoid picrosides present in leaf, rhizome and root of the plant. However, no genomic information is currently available for P. kurrooa, which limits our understanding about its molecular systems and associated responses. The present study brings the first assembled draft genome of P. kurrooa by using 227 Gb of raw data generated by Illumina and PacBio RS II sequencing platforms. The assembled genome has a size of n = ~ 1.7 Gb with 12,924 scaffolds. Four pronged assembly quality validations studies, including experimentally reported ESTs mapping and directed sequencing of the assembled contigs, confirmed high reliability of the assembly. About 76% of the genome is covered by complex repeats alone. Annotation revealed 24,798 protein coding and 9789 non-coding genes. Using the assembled genome, a total of 710 miRNAs were discovered, many of which were found responsible for molecular response against temperature changes. The miRNAs and targets were validated experimentally. The availability of draft genome sequence will aid in genetic improvement and conservation of P. kurrooa. Also, this study provided an efficient approach for assembling complex genomes while dealing with repeats when regular assemblers failed to progress due to repeats. [ABSTRACT FROM AUTHOR]

Dispersal ability is important for the introduction, establishment, and spread of alien plant species. Therefore, determination of the geographical distribution of the dispersal ability of such species, and the relationship between dispersal ability and socio-climatic factors are essential to elucidate the invasion strategies of the alien plant species. Analytic hierarchy process and inventory, risk rank, and dispersal mode data available on Chinese alien plant species were used to determine their dispersal ability, the geographical distribution thereof, and the relationship between socio-climatic factors and dispersal ability. High-risk alien plant species had a higher natural dispersal ability (or several natural dispersal modes) but a lower anthropogenic dispersal ability (or few anthropogenic dispersal modes) than low-risk alien plant species. The geographical distribution of the dispersal ability of the alien plant species showed an inverse relationship with species density. Alien plant species with low dispersal ability (i.e., with fewer dispersal modes and distribution in the southeast) showed a tendency to adapt to environments with mild climates, while those with high dispersal ability (i.e., with more disposal nodes and distribution in the northwest) showed a tendency to adapt to harsh environments. It is essential for land managers and policy makers to understand the geographical distribution of the dispersal ability of alien plant species and their socio-climatic control factors to formulate strategies to control the natural and anthropogenic dispersal of such plants. [ABSTRACT FROM AUTHOR]

The aim of this study was to establish a method for geographical origins identification of Panax notoginseng (P. notoginseng) based on abundant chromatographic spectral information. Characteristic fingerprints of P. notoginseng extracts samples were generated by Multi-wavelength Fusion Profiling (MWFP) method based on the HPLC fingerprints established at three wavelengths of 203 nm, 270 nm and 325 nm. The samples grouping results calculated with the averagely linear quantified fingerprint method (ALQFM) and the unsupervised statistical methods based on fusion fingerprints matches with the geographical origins. The Multi-wavelength Fusion Profiling (MWFP) method has been successfully applied to identification of geographical origins of P. notoginseng and shows the advantages compared with single—channel fingerprints. In addition, eight physiologically active components, including four saponins, two flavones and two amino acids, were identified from the most relevant ingredients of P. notoginseng geographical origins by fusion fingerprint-efficacy relationship analysis. Besides the recognized active saponins, other categories of active ingredients such as flavonoids and amino acids should be paid attention to in the producing areas identification or the quality judgment of P. notoginseng. [ABSTRACT FROM AUTHOR]

Infectious diseases caused by nontuberculous mycobacteria (NTM) are increasingly becoming a major global problem. Additionally, Mycobacteroides abscessus subsp. abscessus (MAB) infections are refractory to macrolides. This study was conducted to investigate the epidemiology of rapidly growing mycobacteria (RGM) species isolated from clinical specimens in Japan and assess differences in the regional distribution of lower respiratory specimens (LRS)- and non-lower respiratory specimens (NLRS)-derived species. 532 strains (427 LRS, 92 NLRS and 15 unknown specimens) were isolated in nine areas of Japan. We collected 418 specimens from Bio Medical Laboratories (BML), Inc., and 114 specimens from 45 hospitals in Japan. Their epidemiological differences were examined according to the specimen type, region, and climate. Fifteen species were identified. The proportion of M. abscessus group (MAG) strains was significantly lower in NLRS than in LRS (35.9% vs. 68.4%). The proportion of MAG strains was higher in northern Japan than in other regions (83.7% vs. 60.5%). Variations in strain abundance among RGM species was evident in regions with a mean annual temperature below 15 °C. We conclude that the proportions of MAG strains differed between NLRS and LRS in Japan. In addition, the mean annual temperature likely influenced the distribution of RGM species. [ABSTRACT FROM AUTHOR]

Water level conditions are the key factors that affect the growth and distribution of wetland plants. Using Carex cinerascens (C. cinerascens) as the study species, we employ indoor simulations and field surveys. Our results show that C. cinerascens can adapt to rhythmic changes in the water level through different adaptation strategies. Compared to that of the control group, plant growth was better with a 0–0.4 cm/d water level rate, and plant growth was in the 42–56 cm range to that a 1.0–1.4 cm/d water level rate. Furthermore, it was observed that 0–0.4 cm/d was the most suitable growth rate, with 0.6–1.0 cm/d and 0–32 cm being the ideal plant tolerance ranges, and increasing to 1.0–1.4 cm/d and 32–56 cm exceeds the plant tolerance threshold. In the middle and late period of the experiment (25–45 d), the ecological characteristics of the plants changed significantly. For example, the root-to-shoot ratio of the plant in the stable water level reached 26.1. In our field observations, plant biomass can be influenced by a variety of environmental factors. The frequency of the species was the largest at an elevation of 15 m, and the growth status of the dominant and companion species of C. cinerascens was weakened with an increase in soil moisture content. The suitable water content for C. cinerascens growth was 27.6–57.3%, the distribution elevation was 12.54–16.59 m, and the optimum elevation was 13.56–15.54 m. The study is expected to provide a reference for wetland ecology research and wetland protection and restoration, a theoretical reference for the coordination of water resource development and utilization of Poyang Lake and ecological protection of important lakes and wetlands, and an important scientific basis for wetland hydrologic regulation, ecological restoration and biodiversity conservation. [ABSTRACT FROM AUTHOR]

Seagrasses are regarded as indicators and first line of impact for anthropogenic activities affecting the coasts. The underlying mechanisms driving seagrass cover however have been mostly studied on small scales, making it difficult to establish the connection to seagrass dynamics in an impacted seascape. In this study, hyperspectral airborne imagery, trained from field surveys, was used to investigate broadscale seagrass cover and genus distribution along the coast of Adelaide, South Australia. Overall mapping accuracy was high for both seagrass cover (98%, Kappa = 0.93), and genus level classification (85%, Kappa = 0.76). Spectral separability allowed confident genus mapping in waters up to 10 m depth, revealing a 3.5 ratio between the cover of the dominant Posidonia and Amphibolis. The work identified the absence of Amphibolis in areas historically affected by anthropogenic discharges, which occasionally contained Posidonia and might be recovering. The results suggest hyperspectral imagery as a useful tool to investigate the interplay between seagrass cover and genus distribution at large spatial scales. [ABSTRACT FROM AUTHOR]

This study was conducted to evaluate the abundance and distribution pattern of three keystone Vachellia taxa in wadi Khoda and wadi Rahaba, Gebel Elba National Park, a protected area in south-eastern Egypt. These taxa included Vachellia tortilis subsp. tortilis, Vachellia tortilis subsp. raddiana, and Vachellia ehrenbergiana. In wadi Khoda, only two of these taxa were detected (V. tortilis subsp. raddiana and V. tortilis subsp. tortilis), while all three taxa were encountered in wadi Rahaba. The density of trees in wadi Khoda was 34.3 plant ha−1 compared to 26.3 plant ha−1 in wadi Rahaba. Vachellia tortilis subsp. raddiana was the most frequently observed tree, with an average of 47.93% and 68.25% in wadi Rahaba and wadi Khoda, respectively. Crown depth and tree height were mainly associated with elevation, indicating that elevation plays a key role in the growth of these Vachellia taxa. Our results suggest that human activities have had limited effect on the distribution of these three keystone taxa. Thus, management in Gebel Elba National Park should continue to limit the impact of human activities on these three keystone species. [ABSTRACT FROM AUTHOR]

This study brings insight into interpreting forest structural diversity and explore the classification of individuals according to the distribution of the neighbours in natural forests. Natural forest communities with different latitudes and distribution patterns in China were used. Each tree and its nearest neighbours form a structural unit. Random structural units (or random trees) in natural forests were divided into different sub-types based on the uniform angle index (W). The proportions of different random structural units were analysed. (1) There are only two types of random structural units: type R1 looks similar to a dumbbell, and type R2 looks similar to a torch. These two random structural units coexist in natural forests simultaneously. (2) The proportion of type R1 is far less than that of R2, is only approximately 1/3 of all random structural units or random trees; R2 accounts for approximately 2/3. Furthermore, the proportion of basal area presents the same trend for both random structural units and random trees. R2 has approximately twice the basal area of R1. Random trees (structural units) occupy the largest part of natural forest communities in terms of quantity and basal area. Meanwhile, type R2 is the largest part of random trees (structural units). This study finds that the spatial formation mechanism of natural forest communities which is of great significance to the cultivation of planted forests. [ABSTRACT FROM AUTHOR]

Japanese chestnut (Castanea crenata Sieb. et Zucc.), the only fruit tree species domesticated in Japan, has been cultivated alongside natural stands since prehistorical times. Understanding the genetic diversity of this species and the relationships between cultivated and wild chestnut is important for clarifying its breeding history and determining conservation strategies. We assessed 3 chestnut cultivar populations and 29 wild chestnut populations (618 accessions). Genetic distance analysis revealed that wild populations in the Kyushu region are genetically distant from other populations, whereas other wild and cultivar populations are comparatively similar. Assignment tests suggested that cultivars were relatively similar to populations from central to western Honshu. Bayesian structure analyses showed that wild individuals were roughly classified according to geographical distribution along the Japanese archipelago, except that some wild individuals carried the genetic cluster prevalent in cultivars. Parentage analyses between cultivars and wild individuals identified 26 wild individuals presumed to have a parent–offspring relationship with a cultivar. These results suggested that the genetic structure of some wild individuals in natural stands was influenced by gene flow from cultivars. To conserve wild individuals carrying true "wild" genetic clusters, these individuals should be collected and preserved by ex situ conservation programs. [ABSTRACT FROM AUTHOR]

Nepenthes, as the largest family of carnivorous plants, is found with an extensive geographical distribution throughout the Malay Archipelago, specifically in Borneo, Philippines, and Sumatra. Highland species are able to tolerate cold stress and lowland species heat stress. Our current understanding on the adaptation or survival mechanisms acquired by the different Nepenthes species to their climatic conditions at the phytochemical level is, however, limited. In this study, we applied an eco-metabolomics approach to identify temperature stressed individual metabolic fingerprints of four Nepenthes species: the lowlanders N. ampullaria, N. rafflesiana and N. northiana, and the highlander N. minima. We hypothesized that distinct metabolite regulation patterns exist between the Nepenthes species due to their adaptation towards different geographical and altitudinal distribution. Our results revealed not only distinct temperature stress induced metabolite fingerprints for each Nepenthes species, but also shared metabolic response and adaptation strategies. The interspecific responses and adaptation of N. rafflesiana and N. northiana likely reflected their natural habitat niches. Moreover, our study also indicates the potential of lowlanders, especially N. ampullaria and N. rafflesiana, to produce metabolites needed to deal with increased temperatures, offering hope for the plant genus and future adaption in times of changing climate. [ABSTRACT FROM AUTHOR]

Aquilaria tree species are naturally distributed in the Indomalesian region and are protected against over-exploitation. They produce a fragrant non-timber product of high economic value, agarwood. Ambiguous species delimitation and limited genetic information within Aquilaria are among the impediments to conservation efforts. In this study, we conducted comparative analysis on eight Aquilaria species complete chloroplast (cp) genomes, of which seven were newly sequenced using Illumina HiSeq X Ten platform followed by de novo assembly. Aquilaria cp genomes possess a typical quadripartite structure including gene order and genomic structure. The length of each of the cp genome is about 174 kbp and encoded between 89 and 92 proteins, 38 tRNAs, and 8 rRNAs, with 27 duplicated in the IR (inverted repeat) region. Besides, 832 repeats (forward, reverse, palindrome and complement repeats) and nine highly variable regions were also identified. The phylogenetic analysis suggests that the topology structure of Aquilaria cp genomes were well presented with strong support values based on the cp genomes data set and matches their geographic distribution pattern. In summary, the complete cp genomes will facilitate development of species-specific molecular tools to discriminate Aquilaria species and resolve the evolutionary relationships of members of the Thymelaeaceae family. [ABSTRACT FROM AUTHOR]

Background: Little is known about the single-tree influence of Tectona grandis Linn. f. on plant distribution and soil characteristics in Benin City, Nigeria. We investigated the possible single-tree effect of T. grandis on understory plants in an 8-year-old teak plantation at the Moist Forest Research Station. An area of 36.57 m by 60.96 m was marked out and divided into 15 equal-sized subplots containing 10 trees per subplot. Marked distances from the base of a randomly selected tree per subplot were made (0–0.5 m, 0.5–1.0 m and 1.0–1.5 m). Results: Single-tree influence of T. grandis was observed in the soil total organic carbon, total nitrogen and soluble phosphorus, where concentrations were higher with 1.5-m radius from the tree than beyond. Moreover, the pH of the topsoil within 1.5 m from the base of the tree was lower (pH 4.4) than beyond 1.5 m from the base of the tree (pH 5.4). Species-specific single-tree effect was also observed on the understory plant distribution likely due to diverse ecophysiological interactions. Within 1.5 m from the tree, plant species abundance, especially of Sida garckeana, Reisantia indica, Momordica charantia and Tridax procumbens were negatively affected. However, the distribution of Eleusine indica around the tree was not negatively influenced. Plant abundance was generally suppressed in Cynodon dactylon, Axonopus compressus, Andropogon gayanus, Commelina diffusa and Euphorbia hirta. Generally, there were more plant species beyond the canopy fringes than within the canopy, indicating inhibitory single-tree effects. Conclusion: Not all plant species in close proximity to T. grandis are affected. This is important considering that plant-plant associations affect the quality of forest soils. Generally, more plant species were recorded outside the 1.5-m demarcation than within, an increase in soil organic matter may further enhance such plant species abundance. The impact of T. grandis in forest soil quality is possibly a factor of the outcome of its association with neighbouring plant species. Diverse mechanisms at play may be responsible for the observed effects on soil chemistry. However, a reduction in the soil organic matter and variations in other environmental factors also contributed to observed single-tree effect. [ABSTRACT FROM AUTHOR]

Owing to hostile growth environments and increasing related production, Cistanche plants have decreased in number. The aim of the present study was to evaluate the quality of and to predict potential suitable regions for two official species and two nonofficial species (C. salsa and C. sinensis) by high-performance liquid chromatography and the MaxEnt model. The results indicated that 2′-acetylacteoside was present only in C. deserticola. The compound can be used as a potential chemical marker to discriminate C. deserticola from the three other Cistanche plants. Anthocyanin A and carotenoid F were the common constituents of the two official species only and can thus be used as chemical markers to differentiate between official and nonofficial species. The prediction results of a potentially suitable distribution indicated that C. sinensis has much wider regions for potential distribution than the other species. Finally, the echinacoside content in C. deserticola was significantly different between the two suitable potential distributions, and the contents of samples from Inner Mongolia were significantly higher than those from Gansu Province. This is the first application of the combination of the contents of chemical components and the results of MaxEnt models for the quality assessment of herbal medicine. Our results may provide a reference for the sustainable utilization of endangered Cistanche species. [ABSTRACT FROM AUTHOR]

Oligopeptide transporters (OPT) are integral cell membrane proteins that play a critical role in the transport of small peptides, secondary amino acids, glutathione conjugates, and mineral uptake. In the present study, 67 putative wheat yellow stripe-like transporter (YSL) proteins belonging to the subfamily of OPT transporters were identified. Phylogeny analysis resulted in the distribution of wheat YSLs into four discrete clades. The highest number of YSLs was present on the A genome and the chromosome 2 of hexaploid wheat. The identified wheat YSL genes showed differential expression in different tissues and during grain development suggesting the importance of this subfamily. Gene expression pattern of TaYSLs during iron starvation experiments suggested an early high transcript accumulation of TaYS1A, TaYS1B, TaYSL3, TaYSL5, and TaYSL6 in roots. In contrast, delayed expression was observed in shoots for TaYS1A, TaYS1B, TaYSL5, TaYSL12, and TaYSL19 as compared to control. Further, their expression under biotic and abiotic response emphasized their alternative functions during the plant growth and development. In conclusion, this work is the first comprehensive study of wheat YSL transporters and would be an important resource for prioritizing genes towards wheat biofortification. [ABSTRACT FROM AUTHOR]

The aim of this study was to have a comparative investigation and evaluation of the capabilities of correlative and mechanistic modeling processes, applied to the projection of future distributions of date palm in novel environments and to establish a method of minimizing uncertainty in the projections of differing techniques. The location of this study on a global scale is in Middle Eastern Countries. We compared the mechanistic model CLIMEX (CL) with the correlative models MaxEnt (MX), Boosted Regression Trees (BRT), and Random Forests (RF) to project current and future distributions of date palm ( Phoenix dactylifera L.). The Global Climate Model (GCM), the CSIRO-Mk3.0 (CS) using the A2 emissions scenario, was selected for making projections. Both indigenous and alien distribution data of the species were utilized in the modeling process. The common areas predicted by MX, BRT, RF, and CL from the CS GCM were extracted and compared to ascertain projection uncertainty levels of each individual technique. The common areas identified by all four modeling techniques were used to produce a map indicating suitable and unsuitable areas for date palm cultivation for Middle Eastern countries, for the present and the year 2100. The four different modeling approaches predict fairly different distributions. Projections from CL were more conservative than from MX. The BRT and RF were the most conservative methods in terms of projections for the current time. The combination of the final CL and MX projections for the present and 2100 provide higher certainty concerning those areas that will become highly suitable for future date palm cultivation. According to the four models, cold, hot, and wet stress, with differences on a regional basis, appears to be the major restrictions on future date palm distribution. The results demonstrate variances in the projections, resulting from different techniques. The assessment and interpretation of model projections requires reservations, especially in correlative models such as MX, BRT, and RF. Intersections between different techniques may decrease uncertainty in future distribution projections. However, readers should not miss the fact that the uncertainties are mostly because the future GHG emission scenarios are unknowable with sufficient precision. Suggestions towards methodology and processing for improving projections are included. [ABSTRACT FROM AUTHOR]

Background: Floristic compositions of non-endemic plants of continental islands were related to the neighboring continents because non-endemic plant species had historically migrated to continental islands from source areas. This study attempts to identify source areas of a continental island by means of floristic analysis and to assess possible migration routes on the basis of geographical distribution ranges of plants. Large quantities of angiosperm data records were downloaded from the Global Biodiversity Information Facility (GBIF). Similarity index and cluster analysis were used to identify the floristic similarities among 22 geographical localities of Taiwan (GLTs) and 34 terrestrial ecoregions in Asia. Geographical distribution ranges of non-endemic angiosperm species in Taiwan (NEASTs) were evaluated to mirror the possible migration routes from different source areas to Taiwan. Results: There are 3275 angiosperm species in Taiwan derived from the dataset of GBIF. Among them, 847 are endemic and 2428 are NEASTs. Geographical distribution ranges of the 2428 NEASTs were categorized into 7 distribution groups. They were widely distribution from equator to Siberia (27 species), tropical ecoregions (345 species), tropical and subtropical ecoregions (663 species), tropical to temperate ecoregions (591 species), subtropical ecoregions (265 species), subtropical to temperate ecoregions (387 species), and temperate ecoregions (150 species). Results of similarity indices and cluster analysis demonstrated that high floristic similarities were observed among GLTs at lowland and southern Taiwan and tropical and subtropical ecoregions in Asia. GLTs at high mountains were assumed to have floristic similarity with temperate ecoregions in Asia, whereas the assumption was not supported by our analysis. It is partly because of that angiosperms with tropical and subtropical distributions extend their ranges from low to high elevations in Taiwan. Conclusions: Subtropical ecoregions at southern China and tropical ecoregions at Indochina were more important than temperate ecoregions on playing source areas of NEASTs. Geographical distribution ranges of NEASTs implied that most of the NEASTs were probably migrated from topical or subtropical ecoregions of Asian continent to Taiwan. [ABSTRACT FROM AUTHOR]

Ascophyllum nodosum is a foundation macroalgae of the intertidal zone that distributes across latitude 41.3-69.7°N. We tested the hypothesis that growth of A. nodosum near the northern distribution edge increases with warming. We retrospectively quantified the growth of eight A. nodosum populations at West Greenland and North Norway (from 64°N to 69°N). For seven populations, we measured growth rates since 1997-2002 and for one of them we extended the time series back to 1956 using published estimates. Individuals at northern populations elongated between 2.0 and 9.1 cm year and this variability correlated with temperature and annual ice-free days. A spatial comparison of A. nodosum growth across the species distribution range showed that Northern (and coldest) populations grew at the slowest rates. Our results demonstrate that arctic climate change enhances the growth of A. nodosum populations and suggest that their productivity may increase in response to projected global warming. [ABSTRACT FROM AUTHOR]

Frequent intermediate disturbances can produce qualitatively different spatial heterogeneity and environmental variability than large infrequent disturbances, which facilitates the coexistence of disparate species types. We hypothesized that species coexistence will be maximized at sites exposed to recurring hurricanes with intermediate frequencies and effects. Consequently, we sought to determine if exposure vulnerability (EV) from three hurricanes with intermediate effects and frequencies (Ivan-2004, Dennis-2005 and Dean-2007), or the interaction between exposure and topography, could be used to explain forest structural dynamics and composition. We used data obtained in 2006 and 2012 from within 45, 25 × 25 m (2.8125 ha) permanent sample plots, established according to a randomized block design, and stratified according to elevation and aspect/sites (NE and SW facing ridges) in a tropical montane wet forest, John Crow Mountains, Jamaica. There was a significant reduction in basal area (BA) (14%), tree volume (10%), and density (26%) and there was a negative shift in the height profile of trees. Understory light (2008), stem density, and mortality increased with EV but decreased with aspect. The NE aspect/sites had higher EV after Dean and the other hurricanes. Consequently, BA, volume and density increased significantly for light-demanding species at the NE sites, but declined significantly overall with minimal changes at SW sites. Moreover, diversity was significantly higher at sites with higher EV for the three hurricanes. The frequent hurricanes with intermediate effects may have therefore maintained/increased spatial heterogeneity, which promoted the coexistence of species with disparate life histories at more exposed sites. [ABSTRACT FROM AUTHOR]

The aim of this study was to assess aquatic plant distribution patterns in a Mediterranean temporary pond network (Doñana National Park, SW Spain). We analyzed differences in species composition employing multivariate ordination techniques; we specifically examined the importance of hydroperiod and physical and chemical variables in the five geomorphological areas across which the pond network is spread. The ponds significantly segregated along a north-south gradient, matching the segregation pattern of the aquatic plant assemblages. Ponds in the three northernmost areas showed higher levels of species richness than ponds in the two southernmost areas. In the north, ponds were present at higher densities, spanned a broader hydroperiod range, and had lower conductivity levels; these features were associated with the presence of wet-meadow species and larger numbers of submerged and emergent species. In the south, alkaline waters were mainly associated with different charophyte species, and the predominance of long-hydroperiod ponds helped in increasing the number of floating species. Managed ponds, which had been artificially deepened, contributed to increase pond heterogeneity and hydroperiod breadth across the entire network. At present, such ponds are key to the preservation of Doñana's rich and unique aquatic plant community. [ABSTRACT FROM AUTHOR]

Background: Jatropha curcas L. (Jatropha) is believed to have originated from Mexico and Central America. So far, characterization efforts have focused on Asia, Africa and Mexico. Non-toxic, low phorbol ester (PE) varieties have been found only in Mexico. Differences in PE content in seeds and its structural components, crude oil and cake from Jatropha provenances cultivated in Central and South America were evaluated. Seeds were dehulled, and kernels were separated into tegmen, cotyledons and embryo for PE quantitation by RP-HPLC. Crude oil and cake PE content was also measured. Results: No phenotypic departures in seed size and structure were observed among Jatropha cultivated in Central and South America compared to provenances from Mexico, Asia and Africa. Cotyledons comprised 96.2-97.5 %, tegmen 1.6-2.4 % and embryo represented 0.9-1.4 % of dehulled kernel. Total PE content of all nine provenances categorized them as toxic. Significant differences in kernel PE content were observed among provenances from Mexico, Central and South America (P < 0.01), being Mexican the highest (7.6 mg/g) and Cabo Verde the lowest (2.57 mg/g). All accessions had >95 % of PEs concentrated in cotyledons, 0.5-3 % in the tegmen and 0.5-1 % in the embryo. Over 60 % of total PE in dehulled kernels accumulated in the crude oil, while 35-40 % remained in the cake after extraction. Conclusions: Low phenotypic variability in seed physical, structural traits and PE content was observed among provenances from Latin America. Very high-PE provenances with potential as biopesticide were found in Central America. No PE-free, edible Jatropha was found among provenances currently cultivated in Central America and Brazil that could be used for human consumption and feedstock. Furthermore, dehulled kernel structural parts as well as its crude oil and cake contained toxic PE levels. [ABSTRACT FROM AUTHOR]

Understanding factors controlling ecosystem structure and function is key to predicting the effects of climate change on vegetation distribution and carbon sequestration. Cyclones play a large role in structuring ecosystems and cyclone intensity is expected to increase on a warming planet. The effects of cyclones on broad-scale ecosystem patterns could be substantial but are poorly understood. This study assessed forest structure and biodiversity patterns across an elevation gradient (300-3000 m) in mountainous, humid forests of Taiwan, an island experiencing an average of 3-6 typhoons (regional name of cyclones) annually, and contrasted those patterns with a gradient within the Wuyi Mountains of China (500-2100 m), where the climate is similar to Taiwan but typhoon occurrence is rare and effects are generally minimal. In both Taiwan and the Wuyi Mountains, tree species richness and diversity decreased with increasing elevation. Tree size and stature decrease from low to high elevations in the typhoon-protected Wuyi Mountains. In contrast, the biomass and stature of forests in Taiwan increased from low to high elevations. The relationship between forest stature and climate was also contrasting in relation to typhoon disturbance in that we found decreasing tree height and basal area with increasing temperature in Taiwan, but not in the Wuyi Mountains. The more than twofold increase in tree height and biomass with increasing elevations reported here for subtropical humid forests of Taiwan is a unique pattern that highlights the potential role of cyclones in driving elevational patterns of forest structure. Climate change-induced alterations in tropical cyclone regimes may affect elevational patterns of forest structure and carbon sequestration in regions experiencing frequent cyclones. [ABSTRACT FROM AUTHOR]

The degree to which tree species will shift in response to climate change is uncertain yet critical to understand for assessing ecosystem vulnerability. We analyze results from recent studies that model potential tree species habitat across the eastern United States during the coming century. Our goals were to quantify and spatially analyze habitat projections and their congruence under multiple climate scenarios and to assess the implications of habitat change for forest vulnerability and adaptation to climate change in and around protected areas. We assessed habitat projections of species habitat extent and forest composition for 35 tree species under climate change from 2000 to 2100 within National Park Service management units in the Appalachian Landscape Conservation Cooperative (ALCC), spanning an approximately 1,500 km latitudinal gradient. Our results show that forest composition and species ranges could change substantially under all greenhouse gas emissions scenarios and that model correspondence was stronger for projections of habitat declines than increases. Model correspondence generally increased at finer spatial scales, but varied by tree species and focal area. In the ALCC, forest composition was projected to change the most in protected area centered ecosystems (PACEs). Northeastern PACEs were projected to be suitable for tree species currently in southeastern PACEs, suggesting that intermediate suitable habitat regions could promote tree species persistence and mitigate the impacts of climate change on eastern forests. These results suggest that climate-specific management of eastern U.S. forest ecosystems will be critical but challenging, requiring integrated assessment and management of PACEs and protected areas as well as higher-resolution monitoring and modeling to inform spatially explicit management decisions within eastern U.S. parks. [ABSTRACT FROM AUTHOR]

In the Mississippi River Delta, the common wetland grass, Phragmites australis, displays high genetic diversity, as several genetically distinct populations are co-occurring. Differences in salinity tolerance may be an important factor determining these populations' distribution in the delta. Our study investigated the salt tolerance of four genotypes exposed to 0, 10, 20, 30, and 40 ppt salinity. The growth rate, biomass, and the light-saturated photosynthetic rate were stimulated at 10 ppt salinity and inhibited at salinities higher than 20 ppt, compared to controls. Increased concentrations of Cl and Na were found in the roots and older leaves of plants exposed to high salinities. Salt tolerance levels differed between genotypes. High salinity tolerance was mainly achieved by reduced water uptake and vacuole compartmentalization of toxic ions. The most tolerant genotype sustained biomass and photosynthesis even at 40 ppt, whereas the most sensitive genotype did not survive salinities higher than 20 ppt. Our findings show that the observed occurrence of different genotypes in the Mississippi River Delta is correlated to genetically determined differences in salinity tolerance. Further investigations are needed to better understand the role that salinity tolerance plays in the invasion of certain introduced P. australis genotypes. [ABSTRACT FROM AUTHOR]

Levins's asymmetrical α index quantifies between species overlap over resources more realistically than similar-purpose single-value indices. The associated community-wide $$\bar \alpha$$ index expresses the degree of 'species packing'. Both indices were formulated upon competing animal (i.e., mobile) organisms and are independent of population densities. However, overlap over resources for nonmobile organisms such as plants may have an impact even below carrying capacity. The proposed $$\hat \alpha$$ index, based on Levins's α index, quantifies spatial overlap for plants integrating information on species spatial distribution and crowding conditions. The $$\hat \alpha$$ index is specifically designed for plant distribution data collected in discrete plots with density expressed as percent coverage (%cover) of substratum. We also propose a community-wide $${\hat \alpha_{\text{c}}}$$ index, conceptually analogous to $$\bar \alpha$$ , but furnished with a measure of dispersion ( se $${\hat \alpha_{\text{c}}}$$ ). Species importance within the community is inferred from comparisons of pairwise $$\hat \alpha$$ 's with $${\hat \alpha_{\text{c}}}$$ . The $$\hat \alpha$$ and $${\hat \alpha_{\text{c}}}$$ indices correlate closely and exponentially with plant density, and correct apparent over- and underestimations of interaction intensity at low and very high crowding by Levins's α and $$\bar \alpha$$ , respectively. Index application to aquatic plant communities gave results consistent with within-community and general ecological patterns, suggesting a high potential of the proposed $$\hat \alpha$$ and $${\hat \alpha_{\text{c}}}$$ indices in basic and applied macrophyte ecological studies and management. [ABSTRACT FROM AUTHOR]

Hypocotyl saponin composition of 1,198 accessions of wild soybean ( Glycine soja) collected from China, Korea, Japan and Russia Far East was analyzed by thin-layer chromatography to determine polymorphic variation and geographical distribution. Eight common distinguishable saponin phenotypes were identified: Aa, Ab, AaBc, AbBc, Aa+α, Ab+α, AaBc+α and AbBc+α. The latter four +α type were new. All eight types were identified in China. Type Ab+α was absent in Korea. Types Ab+α and AbBc+α, and Aa+α and Ab+α were not identified in Japan and Russia far east, respectively. Six new triterpene saponins were detected in +α type via LC-PDA/MS/MS analyses. They were, tentatively, designated as H-αg, H-αa, I-αg, I-αa, J-αg and J-αa. These saponins were inherited together by a single dominant allele. A gene symbol Sg- 6 was assigned. Hence, the new saponins were collectively named as Sg-6 saponins. The frequency of Sg- 6 allele was 17.6 % in Chinese, 10.0 % in Korean and 1.0 % in Japanese wild soybean. The wild soybeans having Sg-6 saponins can be utilized in soybean breeding programs as well as in saponin biosynthesis studies in soybean. [ABSTRACT FROM AUTHOR]

Anadenanthera colubrina var. cebil is a discontinuously distributed native tree species in South American subtropical forests. Thirteen quantitative traits and eight nuclear microsatellite loci were examined in individuals from two biogeographic provinces of Argentina to determine the number and composition of genetically distinguishable groups of individuals and explore possible spatial patterns of the phenotypic and genetic variability. Means of reproductive traits were higher in the Yungas than in the Paranaense biogeographic province, whereas five out of eight nonreproductive quantitative traits showed higher mean values in the latter. Variance coefficients were moderate, and there were significant differences between and within provinces. Three clusters were defined based on spatial model for cluster membership for quantitative traits. One cluster grouped the individuals from the Paranaense biogeographic province whereas the individuals from the Yungas biogeographic province grouped regarding its population of origin. Parameters of molecular genetic variability showed higher values in the Yungas than in the Paranaense biogeographic province. Observed heterozygosity was lower than expected heterozygosity in both biogeographic provinces, indicating an excess of homozygosity. The homozygosity test by Watterson and the exact test by Slatkin suggested diversifying selection for locus Ac41.1. Bayesian clustering spatial model for microsatellites loci data were performed for both all loci and for all loci excluding locus Ac41.1. In both analyses two clusters were inferred. Analysis of molecular variance revealed similar results for all genotypes and for all genotypes defined excluding locus Ac41.1. Most of the total variance is attributable to genetic variation within clusters. The presence of homogeneous clusters was detected for both the phenotypic and molecular genetic variability. Two Bayesian clustering analyses were performed according to molecular genetic data, and two clusters were inferred. Individuals were assigned to their provinces of origin. Genetic molecular variation was higher in the populations of the Yungas biogeographic province which translates into highly qualified populations for conservation. Populations from the Paranaense biogeographic province showed the highest mean value of number of seeds per fruit making them valuable as well with regard to the exploitation of management strategies as a means to recover the impacted areas where these populations are located. [ABSTRACT FROM AUTHOR]

Species distribution models (SDMs) were built with US Forest Inventory and Analysis (FIA) publicly available plot coordinates, which are altered for plot security purposes, and compared with SDMs built with true plot coordinates. Six species endemic to the western US, including four junipers ( Juniperus deppeana var. deppeana, J. monosperma, J. occidentalis, J. osteosperma) and two piñons ( Pinus edulis, P. monophylla), were analyzed. The presence-absence models based on current climatic variables were generated over a series of species-specific modeling extents using Random Forests and applied to forecast climatic conditions. The distributions of predictor variables sampled with public coordinates were compared to those sampled with true coordinates using t tests with a Bonferroni adjustment for multiple comparisons. Public- and true-based models were compared using metrics of classification accuracy. The modeled current and forecast distributions were compared in terms of their overall areal agreement and their geographic mean centroids. Comparison of the underlying distributions of predictor variables sampled with true versus public coordinates did not indicate a significant difference for any species at any extent. Both the public- and true-based models had comparable classification accuracies across extent for each species, with the exception of one species, J. occidentalis. True-based models produced geographic distributions with smaller areas under current and future scenarios. The greatest areal difference occurred in the species with the lowest modeled accuracies ( J. occidentalis), and had a forecast distribution which diverged severely. The other species had forecast distributions with similar magnitudes of modeled distribution shifts. [ABSTRACT FROM AUTHOR]

Background: Propolis (bee glue) is a resinous honeybee product having a long history of application in many countries as a traditional remedy for treating wounds, burns, soar throat, stomach disorders, etc. It has been proved to possess beneficial biological effects, including antimicrobial, antioxidant, anti-inflammatory, cytotoxic, antiulcer, and many others. Bees gather propolis from diverse resinous plant parts and in different phytogeographic regions its chemical composition might vary significantly. In this article we report the results of the first study on the chemical profiles of propolis from Oman, its plant origin and antibacterial activity. Results: The chemical profiles of Omani propolis extracts were obtained by GC-MS analysis after silylation. Over 50 individual compounds were identified in the samples, belonging to different compound types: sugars, polyols, hydroxy acids, fatty acids, cardanols and cardols, anacardic acids, flavan derivatives, triterpenes, prenylated flavanones and chalcones. The profiles were dissimilar from other known propolis types. They demonstrate that although Oman is not a large country, the plant sources of propolis vary significantly, even in the same apiary and the same season. Based on chemical profiles, and isolation and identification of major marker compounds (new propolis constituents), new plant sources of propolis were found: Azadiracta indica (neem tree) and Acacia spp. (most probably A. nilotica). The ethanol extracts of the studied propolis samples demonstrated activity against S. aureus (MIC < 100 μg. mL-1) and E. coli (MIC < 380 μg. mL-1). Conclusion: Omani propolis is different form the known propolis types and demonstrates significant chemical diversity. Its most important plant source is the resin of Azadirachta indica, and as a result its typical components are C5-prenyl flavanones. Other plant sources have been identified, too, playing some role in resin collection by bees in Oman: Acacia spp. (most probably A. nilotica) and Mangifera indica. The results demonstrate also the potential of Omani propolis as antimicrobial. [ABSTRACT FROM AUTHOR]

Background and aims: The Bragança Peninsula, in northern Brazil is characterized by macrotides (4 m) and specific edaphic conditions, which determine the local mangrove forest's development. This study, conducted during the dry season evaluated the spatial patterns of Rhizophora mangle and Avicennia germinans species across an inundation gradient. Methods: Along a transect of 700 m, measurements of structure forest, soil moisture, porewater salinity, extractable phosphorus (extr.-P) in sediments, and phosphorus in the leaves (leaf-P) were conducted. Result: The A. germinans (100 %) occurred in high intertidal (HI) zone. A. germinans (59 %) and R. mangle (41 %) co-occurred in mid intertidal (MI) zone, while R. mangle (58 %) predominated in low intertidal (LI) zone, followed by A. germinans (37 %) and Laguncularia racemosa (5 %). Covariance analysis (ANCOVA) indicated that salinity and soil moisture means are significantly different between the mangrove forests, but do not correlate with inundation frequency (IF). The means of extr.-P were significantly different in mangrove forests and correlated with IF and leaf-P. Conclusion: The inundation frequency, the availability of P in the sediments, phosphorus in the leaves and interstitial salinity are all important factors contributing to the distribution of the mangrove tree species A. germinans and R. mangle on the Bragança Peninsula. [ABSTRACT FROM AUTHOR]

To investigate the dynamics of phytoplankton size structure in the Pearl River estuary, concentrations of size-fractionated chlorophyll a (Chl a) were determined during four cruises carried out in 2008 and 2010. The distribution of Chl a in this geographical location showed a high degree of temporal variation. Chl a concentrations were highest in autumn, approximately three times higher than those in summer and winter. Microphytoplankton was the dominant contributor, accounting for 66.9% of the Chl a concentration in autumn 2008. In summer and spring 2008, nano-sized cells dominated the phytoplankton population throughout the study region. During the winter cruise, two different areas of water were found, characterized by (1) low salinity and high nutrient content and (2) high salinity and low nutrient content; nano- and picophytoplankton co-dominated the first area, while microphytoplankton dominated the second. It is arguable that grazing could have played a role in determining phytoplankton community size structure in winter. Nutrient concentrations were assumed not to limit phytoplankton growth during the investigation period. Size-differential capacity in competing for the resources available under different hydrodynamic conditions seemed to be the major factor in determining seasonal variation in the structure of the phytoplankton communities. High N:P ratios in the Pearl River estuary had major implications for nutrient pollution control. Our results indicated that studies of phytoplankton size structure provide greater insight into phytoplankton dynamics and are necessary to better manage water quality in the Pearl River estuary. [ABSTRACT FROM AUTHOR]

Aims: Arbuscular mycorrhizal (AM) fungi, a group of obligate symbionts of terrestrial plants, have a global distribution range. Yet, we lack concrete synthetic and empirical evidence that could reveal whether distinct ecological niches are distributed across Glomeromycota through determining linkages between environmental factors and the distribution of these taxa. Methods: We have modelled the probability of occurrence of Gigasporaceae and Acaulosporaceae as a function of candidate environmental factors. These families are among the most common but non-ubiquitous taxa in AM-driven ecosystems. We have constructed our database using studies with a global scope and carried out our analysis through a logistic regression approach. Results: The probability of occurrence of Acaulosporacae increased in acidic environments and soils with high bulk density. By contrast, a key factor that affected probability of occurrence of Gigasporaceae was precipitation. Conclusions: Through the analysis of an unprecedentedly large amount of data we could infer that niche processes mediate occurrence of a group of fungi at scales broader than the local scale of the individual studies gathered in the analysed dataset. Knowledge of well-supported niche features could enhance discovery of new taxa of AM fungi, and would facilitate development of study designs with greater ecological realism. [ABSTRACT FROM AUTHOR]

Background and Aim: Biotic and abiotic factors contribute in shaping the distribution through the soil profile of elements released by mineral weathering; among them, leaching and biocycling dominate in temperate environments. We evaluated if the intensity of leaching and biocycling of nutrients can be modulated by element deficiencies linked to the abundance of serpentine in the soil parent material, i.e. if the most deficient elements are more efficiently retained. Methods: We selected twelve poorly developed soils from Northern Italian beech stands, with variable amounts of serpentinites in the parent material, and determined total and exchangeable Ca, Mg and K, as well as an index of abundance of serpentine minerals. Results: The total element content depended on the abundance of serpentines, while only exchangeable Mg was related to the parent material. The vertical trend of Ca and K indicated the role of biocycling in all soils, but the relative availability of Ca (ratio between exchangeable and total content) was much higher in the top horizons of serpentine-rich soils. Conclusions: The different element availability among soils suggested that the vertical distribution of available elements was linked to the parent material and that losses were limited in serpentine-rich soils, probably because plants take up the deficient elements as soon as they are released from litter and thus limit their leaching in deeper soil horizons. [ABSTRACT FROM AUTHOR]