32 results on '"Hofrichter, Martin"'
Search Results
2. Nitrogen addition increases mass loss of gymnosperm but not of angiosperm deadwood without changing microbial communities
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Roy, Friederike, Ibayev, Orkhan, Arnstadt, Tobias, Bässler, Claus, Borken, Werner, Groß, Christina, Hoppe, Björn, Hossen, Shakhawat, Kahl, Tiemo, Moll, Julia, Noll, Matthias, Purahong, Witoon, Schreiber, Jasper, Weisser, Wolfgang W., Hofrichter, Martin, and Kellner, Harald
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- 2023
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3. Cell-free production of the bifunctional glycoside hydrolase GH78 from Xylaria polymorpha
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Knauer, Jan Felix, Liers, Christiane, Hahn, Stephanie, Wuestenhagen, Doreen A., Zemella, Anne, Kellner, Harald, Haueis, Lisa, Hofrichter, Martin, and Kubick, Stefan
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- 2022
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4. Fungal dye-decolorizing peroxidase diversity: roles in either intra- or extracellular processes
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Adamo, Martino, Comtet-Marre, Sophie, Büttner, Enrico, Kellner, Harald, Luis, Patricia, Vallon, Laurent, Prego, Rocio, Hofrichter, Martin, Girlanda, Mariangela, Peyret, Pierre, and Marmeisse, Roland
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- 2022
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5. Structural Insights and Reaction Profile of a New Unspecific Peroxygenase from Marasmius wettsteinii Produced in a Tandem-Yeast Expression System.
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Sánchez-Moreno, Israel, Fernandez-Garcia, Angela, Mateljak, Ivan, Gomez de Santos, Patricia, Hofrichter, Martin, Kellner, Harald, Sanz-Aparicio, Julia, and Alcalde, Miguel
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- 2024
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6. Cellobiose dehydrogenase from the agaricomycete Coprinellus aureogranulatus and its application for the synergistic conversion of rice straw
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Nghi, Do Huu, Kellner, Harald, Büttner, Enrico, Huong, Le Mai, Duy, Le Xuan, Giap, Vu Dinh, Quynh, Dang Thu, Hang, Tran Thi Nhu, Verberckmoes, An, Diels, Ludo, Liers, Christiane, and Hofrichter, Martin
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- 2021
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7. Engineering a Highly Regioselective Fungal Peroxygenase for the Synthesis of Hydroxy Fatty Acids
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European Commission, Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), Comunidad de Madrid, Ministerio de Ciencia, Innovación y Universidades (España), Gómez de Santos, Patricia [0000-0001-9573-1364], González-Benjumea, Alejandro [0000-0003-2857-9491], Aranda, Carmen [0000-0001-8213-1132], Wu, Yinqi [0000-0002-6158-8288], Molina-Espeja, Patricia [0000-0002-2590-0932], Maté, Diana M. [0000-0002-8209-0542], González-Pérez, David [0000-0001-9613-4705], Zhang, Wuyuan [0000-0002-3182-5107], Kiebist, Jan [0000-0003-2889-378X], Hofrichter, Martin [0000-0001-5174-7604], Świderek, Katarzyna [0000-0002-7528-1551], Moliner, Vicent [0000-0002-3665-3391], Sanz Aparicio, Julia [0000-0002-6849-8621], Hollmann, Frank [0000-0003-4821-756X], Gutiérrez Suárez, Ana [0000-0002-8823-9029], Alcalde Galeote, Miguel [0000-0001-6780-7616], Gómez de Santos, Patricia, González-Benjumea, Alejandro, Fernández-García, Ángela, Wu, Yinqi, But, Andrada, Molina-Espeja, Patricia, Maté, Diana M., González-Pérez, David, Zhang, Wuyuan, Kiebist, Jan, Scheibner, Katrin, Hofrichter, Martin, Świderek, Katarzyna, Moliner, Vicent, Sanz-Aparicio, J., Hollmann, Frank, Gutiérrez Suárez, Ana, Alcalde Galeote, Miguel, European Commission, Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), Comunidad de Madrid, Ministerio de Ciencia, Innovación y Universidades (España), Gómez de Santos, Patricia [0000-0001-9573-1364], González-Benjumea, Alejandro [0000-0003-2857-9491], Aranda, Carmen [0000-0001-8213-1132], Wu, Yinqi [0000-0002-6158-8288], Molina-Espeja, Patricia [0000-0002-2590-0932], Maté, Diana M. [0000-0002-8209-0542], González-Pérez, David [0000-0001-9613-4705], Zhang, Wuyuan [0000-0002-3182-5107], Kiebist, Jan [0000-0003-2889-378X], Hofrichter, Martin [0000-0001-5174-7604], Świderek, Katarzyna [0000-0002-7528-1551], Moliner, Vicent [0000-0002-3665-3391], Sanz Aparicio, Julia [0000-0002-6849-8621], Hollmann, Frank [0000-0003-4821-756X], Gutiérrez Suárez, Ana [0000-0002-8823-9029], Alcalde Galeote, Miguel [0000-0001-6780-7616], Gómez de Santos, Patricia, González-Benjumea, Alejandro, Fernández-García, Ángela, Wu, Yinqi, But, Andrada, Molina-Espeja, Patricia, Maté, Diana M., González-Pérez, David, Zhang, Wuyuan, Kiebist, Jan, Scheibner, Katrin, Hofrichter, Martin, Świderek, Katarzyna, Moliner, Vicent, Sanz-Aparicio, J., Hollmann, Frank, Gutiérrez Suárez, Ana, and Alcalde Galeote, Miguel
- Abstract
he hydroxylation of fatty acids is an appealing reaction in synthetic chemistry, although the lack of selective catalysts hampers its industrial implementation. Here, we have engineered a highly regioselective fungal peroxygenase for the w-1 hydroxylation of fatty acids with quenched stepwise over-oxidation. One single mutation near the Phe catalytic tripod narrowed the heme cavity, promoting a dramatic shift toward sub-terminal hydroxylation with a drop in the over-oxidation activity. While crystallographic soaking experiments and molecular dynamic simulations shed light on this unique oxidation pattern, the selective biocatalyst was produced by Pichia pastoris at 0.4 g/L in a fed-batch bioreactor and used in the preparative synthesis of 1.4 g of (w-1)-hydroxytetradecanoic acid with 95% regioselectivity and 83% ee through the (S)-enantiomer.The hydroxylation of fatty acids is an appealing reaction in synthetic chemistry, although the lack of selective catalysts hampers its industrial implementation. Here, we have engineered a highly regioselective fungal peroxygenase for the w-1 hydroxylation of fatty acids with quenched stepwise over-oxidation. One single mutation near the Phe catalytic tripod narrowed the heme cavity, promoting a dramatic shift toward sub-terminal hydroxylation with a drop in the over-oxidation activity. While crystallographic soaking experiments and molecular dynamic simulations shed light on this unique oxidation pattern, the selective biocatalyst was produced by Pichia pastoris at 0.4 g/L in a fed-batch bioreactor and used in the preparative synthesis of 1.4 g of (w-1)-hydroxytetradecanoic acid with 95% regioselectivity and 83% ee through the (S)-enantiomer.
- Published
- 2023
8. Conversion of Unsaturated Short- to Medium-Chain Fatty Acids by Unspecific Peroxygenases (UPOs)
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Karich, Alexander, primary, Salzsieder, Fabian, additional, Kluge, Martin, additional, Alcalde, Miguel, additional, Ullrich, René, additional, and Hofrichter, Martin, additional
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- 2023
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9. Enzymatic Epoxidation of Long-Chain Terminal Alkenes by Fungal Peroxygenases
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European Commission, Ministerio de Ciencia e Innovación (España), Babot, Esteban Daniel [0000-0001-5539-1721], Aranda, Carmen [0000-0001-8213-1132], Ullrich, René [0000-0002-9165-6341], Hofrichter, Martin [0000-0001-5174-7604], Martínez, Ángel T. [0000-0002-1584-2863], Gutiérrez Suárez, Ana [0000-0002-8823-9029], Babot, Esteban Daniel, Aranda, Carmen, Kiebist, Jan, Scheibner, Katrin, Ullrich, René, Hofrichter, Martin, Martínez, Ángel T., Gutiérrez Suárez, Ana, European Commission, Ministerio de Ciencia e Innovación (España), Babot, Esteban Daniel [0000-0001-5539-1721], Aranda, Carmen [0000-0001-8213-1132], Ullrich, René [0000-0002-9165-6341], Hofrichter, Martin [0000-0001-5174-7604], Martínez, Ángel T. [0000-0002-1584-2863], Gutiérrez Suárez, Ana [0000-0002-8823-9029], Babot, Esteban Daniel, Aranda, Carmen, Kiebist, Jan, Scheibner, Katrin, Ullrich, René, Hofrichter, Martin, Martínez, Ángel T., and Gutiérrez Suárez, Ana
- Abstract
Terminal alkenes are among the most attractive starting materials for the synthesis of epoxides, which are essential and versatile intermediate building blocks for the pharmaceutical, fla-voring, and polymer industries. Previous research on alkene epoxidation has focused on the use of several oxidizing agents and/or different enzymes, including cytochrome P450 monooxygenases, as well as microbial whole-cell catalysts that have several drawbacks. Alternatively, we explored the ability of unspecific peroxygenases (UPOs) to selectively epoxidize terminal alkenes. UPOs are attractive biocatalysts because they are robust extracellular enzymes and only require H2O2 as cosub-strate. Here, we show how several UPOs, such as those from Cyclocybe (Agrocybe) aegerita (AaeUPO), Marasmius rotula (MroUPO), Coprinopsis cinerea (rCciUPO), Humicola insolens (rHinUPO), and Daldinia caldariorum (rDcaUPO), are able to catalyze the epoxidation of long-chain terminal alkenes (from C12:1 to C20:1) after an initial optimization of several reaction parameters (cosolvent, cosub-strate, and pH). In addition to terminal epoxides, alkenols and other hydroxylated derivatives of the alkenes were formed. Although all UPOs were able to convert and epoxidize the alkenes, nota-ble differences were observed between them, with rCciUPO being responsible for the highest sub-strate turnover and MroUPO being the most selective with respect to terminal epoxidation. The potential of peroxygenases for epoxidizing long-chain terminal alkenes represents an interesting and green alternative to the existing synthesis technologies. © 2022 by the authors. Licensee MDPI, Basel, Switzerland
- Published
- 2022
10. Engineering a Highly Regioselective Fungal Peroxygenase for the Synthesis of Hydroxy Fatty Acids (Póster)
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Gómez de Santos, Patricia, González-Benjumea, Alejandro, Fernández-García, Ángela, Aranda, Carmen, Wu, Yinqi, But, Andrada, Molina-Espeja, Patricia, Maté, Diana M., González-Pérez, David, Zhang, Wuyuan, Kiebist, Jan, Scheibner, Katrin, Hofrichter, Martin, Świderek, Katarzyna, Moliner, Vicent, Sanz-Aparicio, J., Hollmann, Frank, Gutiérrez Suárez, Ana, Alcalde Galeote, Miguel, Gómez de Santos, Patricia, González-Benjumea, Alejandro, Fernández-García, Ángela, Aranda, Carmen, Wu, Yinqi, But, Andrada, Molina-Espeja, Patricia, Maté, Diana M., González-Pérez, David, Zhang, Wuyuan, Kiebist, Jan, Scheibner, Katrin, Hofrichter, Martin, Świderek, Katarzyna, Moliner, Vicent, Sanz-Aparicio, J., Hollmann, Frank, Gutiérrez Suárez, Ana, and Alcalde Galeote, Miguel
- Abstract
The hydroxylation of fatty acids is an appealing reaction in synthetic chemistry, although the lack of selective catalysts hampers its industrial implementation. In this study, we have engineered a highly regioselective fungal peroxygenase for the ¿-1 hydroxylation of fatty acids with quenched stepwise over-oxidation. One single mutation (A77L, Fett variant) found by structural studies and saturation mutagenesis near the Phe catalytic tripod narrowed the heme cavity, promoting a dramatic shift toward subterminal hydroxylation with a drop in the over-oxidation activity as determined by GC/MS. While molecular dynamic simulations shed light on this unique oxidation pattern, the selective biocatalyst was overexpressed in Pichia pastoris at 0.4 g/L-1 operating a fed-batch bioreactor and used for the preparative synthesis of 1.4 g of (¿-1)-hydroxytetradecanoic acid with 95% regioselectivity and 83% ee for the S-enantiomer.
- Published
- 2023
11. Conversion of Unsaturated Short- to Medium-Chain Fatty Acids by Unspecific Peroxygenases (UPOs)
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Karich, Alexander, Salzsieder, Fabian, Kluge, Martin, Alcalde, Miguel, Ullrich, René, Hofrichter, Martin, Karich, Alexander, Salzsieder, Fabian, Kluge, Martin, Alcalde, Miguel, Ullrich, René, and Hofrichter, Martin
- Abstract
Eighteen short- to medium-chain monounsaturated fatty acids were screened for hydroxylation and epoxidation using eleven different peroxygenase preparations. Most of these unspecific peroxygenases (UPOs) are secreted by fungal species of the dark-spored basidiomycetous families Psathyrellaceae and Strophariaceae, two belonged to the white-spored genus Marasmius (Marasmiaceae), and one belonged to the ascomycetous family Chaetomiaceae. The fatty acids (FAs) studied were categorized into three groups based on the position of the double bond: (i) terminal unsaturated FAs (between ω and ω-1), (ii) α-β-unsaturated FAs (between C2 and C3), and (iii) β-γ-unsaturated FAs (between C3 and C4). Their chain lengths ranged from three to nine carbon atoms. FAs with a terminal double bond were significantly oxidized by only two UPOs, namely CglUPO and CraUPO (peroxygenases from Chaetomium globosum and Coprinellus radians, respectively), producing different products. FAs with internal double bonds were converted by all tested UPOs. While epoxides were observed as products in the case of α-β-unsaturated fatty acids, only CglUPO formed β-γ-epoxides from the corresponding FAs. The product pattern of the other UPOs for β-γ-unsaturated FAs was quite similar. On the other hand, the product pattern for oxidized α-β-unsaturated FAs was more variable and, in some cases, specific to a particular UPO. For example, in the reaction with trans-2-nonenoic acid, the enzymes clustered into six groups based on the formed products.
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- 2023
12. Engineering a Highly Regioselective Fungal Peroxygenase for the Synthesis of Hydroxy Fatty Acids
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Gomez de Santos, Patricia, primary, González‐Benjumea, Alejandro, additional, Fernandez‐Garcia, Angela, additional, Aranda, Carmen, additional, Wu, Yinqi, additional, But, Andrada, additional, Molina‐Espeja, Patricia, additional, Maté, Diana M., additional, Gonzalez‐Perez, David, additional, Zhang, Wuyuan, additional, Kiebist, Jan, additional, Scheibner, Katrin, additional, Hofrichter, Martin, additional, Świderek, Katarzyna, additional, Moliner, Vicent, additional, Sanz‐Aparicio, Julia, additional, Hollmann, Frank, additional, Gutiérrez, Ana, additional, and Alcalde, Miguel, additional
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- 2023
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13. Regional Variation in Deadwood Decay of 13 Tree Species: Effects of Climate, Soil and Forest Structure
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Borken, Werner, primary, Edelmann, Pascal, additional, Weisser, Wolfgang W., additional, Ambarlı, Didem, additional, Bässler, Claus, additional, Buscot, François, additional, Hofrichter, Martin, additional, Hoppe, Björn, additional, Kellner, Harald, additional, Minnich, Cynthia, additional, Moll, Julia, additional, Persoh, Derek, additional, Seibold, Sebastian, additional, Seilwinder, Claudia, additional, Schulze, Ernst-Detlef, additional, and Wöllauer, Stephan, additional
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- 2023
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14. Development and pilot production of sustainable bio binder systems for wood-based panels - SusBind project
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Webb, Stephen, Weiss-Anton, Roxana, Weiss, Stefan, Becker, Andreas, Bregola, Massimo, Bergsma, Geert, Sanne, Nusselder, Martínez, Ángel T., Gutiérrez Suárez, Ana, Geyer, Andreas, Zibek, Susanne, Scheibner, Katrin, van Herwijnen, Erik, Hofrichter, Martin, Gouveia, Alexandra, Nordänger, Svante, and Bio Based Industries Joint Undertaking
- Subjects
Biobased industries joint-undertaking ,Furniture ,LCA analysis ,Hydroxymethylfurfural ,Boards ,Vegetable oils ,Binder ingredients ,Industrial by-products ,Epoxidized lipids ,Sugars ,Resins ,Sustainable bio-economy ,Bio-based chemicals - Abstract
4 páginas.- 1 figura.- 21 referencias.- Descripción del póster presentado en el 16th European Workshop on Lignocellulosics and Pulp (EWLP) Gothenburg, Sweden, June 28 – July 1, 2022, Currently, wood boards such as Particle Board (PB) and Medium Density Fibreboard (MDF) rely on the use of fossil-based binders, mainly formaldehyde-based binders. Although there has been a great deal of investigation into potential alternatives, to date none of the biobased alternatives have performed satisfactorily on an industrial scale., This project has received funding from the Bio Based Industries Joint Undertaking under the European Union’s Horizon 2020 research and innovation programme under Grant Agreement No 792063.
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- 2022
15. Draft Genome Sequence of Truncatella angustata (Anamorph) S358
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Kellner, Harald, primary, Friedrich, Stephanie, additional, Schmidtke, Kai-Uwe, additional, Ullrich, René, additional, Kiebist, Jan, additional, Zänder, Daniel, additional, Hofrichter, Martin, additional, and Scheibner, Katrin, additional
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- 2022
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16. Novel Unspecific Peroxygenase from Truncatella angustata Catalyzes the Synthesis of Bioactive Lipid Mediators
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König, Rosalie, primary, Kiebist, Jan, additional, Kalmbach, Johannes, additional, Herzog, Robert, additional, Schmidtke, Kai-Uwe, additional, Kellner, Harald, additional, Ullrich, René, additional, Jehmlich, Nico, additional, Hofrichter, Martin, additional, and Scheibner, Katrin, additional
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- 2022
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17. Novel Fatty Acid Chain-Shortening by Fungal Peroxygenases Yielding 2C-Shorter Dicarboxylic Acids
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Olmedo, Andrés, Ullrich, René, Hofrichter, Martin, del Río, José C., Martínez, Ángel T., Gutiérrez, Ana, Olmedo, Andrés, Ullrich, René, Hofrichter, Martin, del Río, José C., Martínez, Ángel T., and Gutiérrez, Ana
- Abstract
Unspecific peroxygenases (UPOs), the extracellular enzymes capable of oxygenating a potpourri of aliphatic and aromatic substrates with a peroxide as co-substrate, come out with a new reaction: carbon-chain shortening during the conversion of fatty acids with the well-known UPOs from Coprinopsis cinerea (rCciUPO) and Cyclocybe (Agrocybe) aegerita (AaeUPO). Although a pathway (Cα-oxidation) for shortening the hydrocarbon chain of saturated fatty acids has already been reported for the UPO from Marasmius rotula (MroUPO), it turned out that rCciUPO and AaeUPO shorten the chain length of both saturated and unsaturated fatty acids in a different way. Thus, the reaction sequence does not necessarily start at the Cα-carbon (adjacent to the carboxyl group), as in the case of MroUPO, but proceeds through the subterminal (ω-1 and ω-2) carbons of the chain via several oxygenations. This new type of shortening leads to the formation of a dicarboxylic fatty acid reduced in size by two carbon atoms in the first step, which can subsequently be further shortened, carbon by carbon, by the UPO Cα-oxidation mechanism.
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- 2022
18. Development and pilot production of sustainable bio binder systems for wood-based panels - SusBind project
- Author
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Bio-based Industries Joint Undertaking, Webb, Stephen, Weiss-Anton, Roxana, Weiss, Stefan, Becker, Andreas, Bregola, Massimo, Bergsma, Geert, Sanne, Nusselder, Martínez, Ángel T., Gutiérrez Suárez, Ana, Geyer, Andreas, Zibek, Susanne, Scheibner, Katrin, van Herwijnen, Erik, Hofrichter, Martin, Gouveia, Alexandra, Nordänger, Svante, Bio-based Industries Joint Undertaking, Webb, Stephen, Weiss-Anton, Roxana, Weiss, Stefan, Becker, Andreas, Bregola, Massimo, Bergsma, Geert, Sanne, Nusselder, Martínez, Ángel T., Gutiérrez Suárez, Ana, Geyer, Andreas, Zibek, Susanne, Scheibner, Katrin, van Herwijnen, Erik, Hofrichter, Martin, Gouveia, Alexandra, and Nordänger, Svante
- Abstract
Currently, wood boards such as Particle Board (PB) and Medium Density Fibreboard (MDF) rely on the use of fossil-based binders, mainly formaldehyde-based binders. Although there has been a great deal of investigation into potential alternatives, to date none of the biobased alternatives have performed satisfactorily on an industrial scale.
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- 2022
19. Novel Fatty Acid Chain-Shortening by Fungal Peroxygenases Yielding 2C-Shorter Dicarboxylic Acids
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Olmedo, Andrés, primary, Ullrich, René, additional, Hofrichter, Martin, additional, del Río, José C., additional, Martínez, Ángel T., additional, and Gutiérrez, Ana, additional
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- 2022
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20. Disentangling the importance of space and host tree for the beta-diversity of beetles, fungi, and bacteria: Lessons from a large dead-wood experiment
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Rieker, Daniel, primary, Krah, Franz-S., additional, Gossner, Martin M., additional, Uhl, Britta, additional, Ambarli, Didem, additional, Baber, Kristin, additional, Buscot, François, additional, Hofrichter, Martin, additional, Hoppe, Björn, additional, Kahl, Tiemo, additional, Kellner, Harald, additional, Moll, Julia, additional, Purahong, Witoon, additional, Seibold, Sebastian, additional, Weisser, Wolfgang W., additional, and Bässler, Claus, additional
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- 2022
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21. Enzymatic Epoxidation of Long-Chain Terminal Alkenes by Fungal Peroxygenases
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Babot, Esteban D., primary, Aranda, Carmen, additional, Kiebist, Jan, additional, Scheibner, Katrin, additional, Ullrich, René, additional, Hofrichter, Martin, additional, Martínez, Angel T., additional, and Gutiérrez, Ana, additional
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- 2022
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22. Cell-Free Protein Synthesis with Fungal Lysates for the Rapid Production of Unspecific Peroxygenases
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Schramm, Marina, primary, Friedrich, Stephanie, additional, Schmidtke, Kai-Uwe, additional, Kiebist, Jan, additional, Panzer, Paul, additional, Kellner, Harald, additional, Ullrich, René, additional, Hofrichter, Martin, additional, and Scheibner, Katrin, additional
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- 2022
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23. Broadening the Biocatalytic Toolbox—Screening and Expression of New Unspecific Peroxygenases
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Bormann, Sebastian, primary, Kellner, Harald, additional, Hermes, Johanna, additional, Herzog, Robert, additional, Ullrich, René, additional, Liers, Christiane, additional, Ulber, Roland, additional, Hofrichter, Martin, additional, and Holtmann, Dirk, additional
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- 2022
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24. Peroxide-Mediated Oxygenation of Organic Compounds by Fungal Peroxygenases
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Hofrichter, Martin, primary, Kellner, Harald, additional, Herzog, Robert, additional, Karich, Alexander, additional, Kiebist, Jan, additional, Scheibner, Katrin, additional, and Ullrich, René, additional
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- 2022
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25. Synthesis of Indigo-Dyes from Indole Derivatives by Unspecific Peroxygenases and Their Application for In-Situ Dyeing
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Ullrich, René, primary, Poraj-Kobielska, Marzena, additional, Herold-Majumdar, Owik M., additional, Vind, Jesper, additional, and Hofrichter, Martin, additional
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- 2021
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26. Regioselective and Stereoselective Epoxidation of n-3 and n-6 Fatty Acids by Fungal Peroxygenases
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González-Benjumea, Alejandro, primary, Linde, Dolores, additional, Carro, Juan, additional, Ullrich, René, additional, Hofrichter, Martin, additional, Martínez, Angel T., additional, and Gutiérrez, Ana, additional
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- 2021
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27. Enzymatic machinery of wood-inhabiting fungi that degrade temperate tree species
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Kipping, Lydia, Jehmlich, Nico, Moll, Julia, Noll, Matthias, Gossner, Martin M, Van Den Bossche, Tim, Edelmann, Pascal, Borken, Werner, Hofrichter, Martin, and Kellner, Harald
- Abstract
Deadwood provides habitat for fungi and serves diverse ecological functions in forests. We already have profound knowledge of fungal assembly processes, physiological and enzymatic activities, and resulting physico-chemical changes during deadwood decay. However, in situdetection and identification methods, fungal origins, and a mechanistic understanding of the main lignocellulolytic enzymes are lacking. This study used metaproteomics to detect the main extracellular lignocellulolytic enzymes in 12 tree species in a temperate forest that have decomposed for 8 ½ years. Mainly white-rot (and few brown-rot) Basidiomycota were identified as the main wood decomposers, with Armillariaas the dominant genus; additionally, several soft-rot xylariaceous Ascomycota were identified. The key enzymes involved in lignocellulolysis included manganese peroxidase, peroxide-producing alcohol oxidases, laccase, diverse glycoside hydrolases (cellulase, glucosidase, xylanase), esterases, and lytic polysaccharide monooxygenases. The fungal community and enzyme composition differed among the 12 tree species. Ascomycota species were more prevalent in angiosperm logs than in gymnosperm logs. Regarding lignocellulolysis as a function, the extracellular enzyme toolbox acted simultaneously and was interrelated (e.g. peroxidases and peroxide-producing enzymes were strongly correlated), highly functionally redundant, and present in all logs. In summary, our in situstudy provides comprehensive and detailed insight into the enzymatic machinery of wood-inhabiting fungi in temperate tree species. These findings will allow us to relate changes in environmental factors to lignocellulolysis as an ecosystem function in the future.Graphical Abstract
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- 2024
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28. Cellobiose dehydrogenase from the agaricomycete Coprinellus aureogranulatusand its application for the synergistic conversion of rice straw
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Nghi, Do Huu, Kellner, Harald, Büttner, Enrico, Huong, Le Mai, Duy, Le Xuan, Giap, Vu Dinh, Quynh, Dang Thu, Hang, Tran Thi Nhu, Verberckmoes, An, Diels, Ludo, Liers, Christiane, and Hofrichter, Martin
- Abstract
From the biotechnological viewpoint, the enzymatic disintegration of plant lignocellulosic biomass is a promising goal since it would deliver fermentable sugars for the chemical sector. Cellobiose dehydrogenase (CDH) is a vital component of the extracellular lignocellulose-degrading enzyme system of fungi and has a great potential to improve catalyst efficiency for biomass processing. In the present study, a CDH from a newly isolated strain of the agaricomycete Coprinellus aureogranulatus(CauCDH) was successfully purified with a specific activity of 28.9 U mg−1. This pure enzyme (MW = 109 kDa, pI = 5.4) displayed the high oxidative activity towards β-1–4-linked oligosaccharides. Not least, CauCDH was used for the enzymatic degradation of rice straw without chemical pretreatment. As main metabolites, glucose (up to 165.18 ± 3.19 mg g−1), xylose (64.21 ± 1.22 mg g−1), and gluconic acid (5.17 ± 0.13 mg g−1) could be identified during the synergistic conversion of this raw material with the fungal hydrolases (e.g., esterase, cellulase, and xylanase) and further optimization by using an RSM statistical approach.
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- 2021
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29. Novel Fatty Acid Chain-Shortening by Fungal Peroxygenases Yielding 2C-Shorter Dicarboxylic Acids
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Andrés Olmedo, René Ullrich, Martin Hofrichter, José C. del Río, Ángel T. Martínez, Ana Gutiérrez, European Commission, Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), Consejo Superior de Investigaciones Científicas (España), Olmedo, Andrés [0000-0002-7039-1436], Ullrich, René [0000-0002-9165-6341], Hofrichter, Martin [0000-0001-5174-7604], Río Andrade, José Carlos del [0000-0002-3040-6787], Martínez, Ángel T. [0000-0002-1584-2863], Gutiérrez Suárez, Ana [0000-0002-8823-9029], Olmedo, Andrés, Ullrich, René, Hofrichter, Martin, Río Andrade, José Carlos del, Martínez, Ángel T., and Gutiérrez Suárez, Ana
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EC 1.11.2.1 ,Chain shortening ,Physiology ,Clinical Biochemistry ,Agrocybe aegerita ,Cell Biology ,Fungal enzymes ,Biochemistry ,Peroxygenation ,Coprinopsis cinerea ,chain shortening ,fatty acids ,peroxygenation ,fungal enzymes ,Fatty acids ,Molecular Biology - Abstract
10 páginas.- 4 figuras.- referencias.-Data Availability Statement: All data underlying this article are available in the main publication and in its Supplementary Materials online., Unspecific peroxygenases (UPOs), the extracellular enzymes capable of oxygenating a potpourri of aliphatic and aromatic substrates with a peroxide as co-substrate, come out with a new reaction: carbon-chain shortening during the conversion of fatty acids with the well-known UPOs from Coprinopsis cinerea (rCciUPO) and Cyclocybe (Agrocybe) aegerita (AaeUPO). Although a pathway (Cα-oxidation) for shortening the hydrocarbon chain of saturated fatty acids has already been reported for the UPO from Marasmius rotula (MroUPO), it turned out that rCciUPO and AaeUPO shorten the chain length of both saturated and unsaturated fatty acids in a different way. Thus, the reaction sequence does not necessarily start at the Cα-carbon (adjacent to the carboxyl group), as in the case of MroUPO, but proceeds through the subterminal (ω-1 and ω-2) carbons of the chain via several oxygenations. This new type of shortening leads to the formation of a dicarboxylic fatty acid reduced in size by two carbon atoms in the first step, which can subsequently be further shortened, carbon by carbon, by the UPO Cα-oxidation mechanism. View Full-Text, This research was funded by BioBased Industries Joint Undertaking under the European Union’s Horizon 2020 Research and Innovation Programme, grant number 792063 (SusBind project; https://susbind.eu; to A.G., Á.T.M. and M.H.), the PID2020-118968RB-100 project by the Spanish MCIN/AEI/ 10.13039/501100011033 to A.G., and the CSIC projects PIE-202040E185 (to A.G.) and PIE-202120E019 (to Á.T.M.).
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- 2022
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30. Enzymatic Epoxidation of Long-Chain Terminal Alkenes by Fungal Peroxygenases
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Esteban D. Babot, Carmen Aranda, Jan Kiebist, Katrin Scheibner, René Ullrich, Martin Hofrichter, Angel T. Martínez, Ana Gutiérrez, European Commission, Ministerio de Ciencia e Innovación (España), Babot, Esteban Daniel [0000-0001-5539-1721], Aranda, Carmen [0000-0001-8213-1132], Ullrich, René [0000-0002-9165-6341], Hofrichter, Martin [0000-0001-5174-7604], Martínez, Ángel T. [0000-0002-1584-2863], Gutiérrez Suárez, Ana [0000-0002-8823-9029], Babot, Esteban Daniel, Aranda, Carmen, Ullrich, René, Hofrichter, Martin, Martínez, Ángel T., and Gutiérrez Suárez, Ana
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peroxygenases ,oxyfunctionalization ,epoxidation ,terminal alkenes ,epoxides ,Physiology ,Epoxides ,Clinical Biochemistry ,Epoxidation ,Cell Biology ,Oxyfunctionalization ,Terminal alkenes ,Peroxygenases ,Molecular Biology ,Biochemistry - Abstract
12 páginas.- 2 figuras.- 2 tablas.- 55 referencias.-Supplementary Materials: The following supporting information can be downloaded at: https:www.mdpi.com/article/10.3390/antiox11030522/s1, Terminal alkenes are among the most attractive starting materials for the synthesis of epoxides, which are essential and versatile intermediate building blocks for the pharmaceutical, fla-voring, and polymer industries. Previous research on alkene epoxidation has focused on the use of several oxidizing agents and/or different enzymes, including cytochrome P450 monooxygenases, as well as microbial whole-cell catalysts that have several drawbacks. Alternatively, we explored the ability of unspecific peroxygenases (UPOs) to selectively epoxidize terminal alkenes. UPOs are attractive biocatalysts because they are robust extracellular enzymes and only require H2O2 as cosub-strate. Here, we show how several UPOs, such as those from Cyclocybe (Agrocybe) aegerita (AaeUPO), Marasmius rotula (MroUPO), Coprinopsis cinerea (rCciUPO), Humicola insolens (rHinUPO), and Daldinia caldariorum (rDcaUPO), are able to catalyze the epoxidation of long-chain terminal alkenes (from C12:1 to C20:1) after an initial optimization of several reaction parameters (cosolvent, cosub-strate, and pH). In addition to terminal epoxides, alkenols and other hydroxylated derivatives of the alkenes were formed. Although all UPOs were able to convert and epoxidize the alkenes, nota-ble differences were observed between them, with rCciUPO being responsible for the highest sub-strate turnover and MroUPO being the most selective with respect to terminal epoxidation. The potential of peroxygenases for epoxidizing long-chain terminal alkenes represents an interesting and green alternative to the existing synthesis technologies. © 2022 by the authors. Licensee MDPI, Basel, Switzerland, This research was funded by BioBased Industries Joint Undertaking under the European Union’s Horizon 2020 Research and Innovation Programme, grant number 792063 (SusBind project; https://susbind.eu, accessed on 1 February 2022; to A.G., A.T.M. and M.H.); the PID2020-118968RB-100 project of the Spanish MCIN/AEI/10.13039/501100011033 to A.G.; the CSIC projects PIE-202040E185 (to A.G.) and PIE-202120E019 (to A.T.M.); the CSIC SusPlast platform (to A.T.M.); and the CSIC program for the Spanish Recovery, Transformation and Resilience Plan funded by the Recovery and Resilience Facility of the European Union, established by the Regulation (EU) 2020/2094
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- 2022
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31. Regioselective and Stereoselective Epoxidation of n-3 and n-6 Fatty Acids by Fungal Peroxygenases
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Dolores Linde, Ángel T. Martínez, Ana Gutiérrez, René Ullrich, Juan Carro, Martin Hofrichter, Alejandro González-Benjumea, European Commission, Ministerio de Ciencia e Innovación (España), Consejo Superior de Investigaciones Científicas (España), González-Benjumea, Alejandro, Linde, Dolores, Carro, Juan, Ullrich, René, Hofrichter, Martin, Martínez, Ángel T., Gutiérrez Suárez, Ana, González-Benjumea, Alejandro [0000-0003-2857-9491], Linde, Dolores [0000-0002-0359-0566], Carro, Juan [0000-0002-7556-9782], Ullrich, René [0000-0002-9165-6341], Hofrichter, Martin [0000-0001-5174-7604], Martínez, Ángel T. [0000-0002-1584-2863], and Gutiérrez Suárez, Ana [0000-0002-8823-9029]
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Physiology ,Clinical Biochemistry ,Epoxide ,RM1-950 ,01 natural sciences ,Biochemistry ,Chemical synthesis ,Article ,Bioactive compounds ,Regioselective synthesis ,03 medical and health sciences ,chemistry.chemical_compound ,unspecific peroxygenases ,epoxylipids ,polyunsaturated fatty acids ,omega 3 (n-3) fatty acids ,omega 6 (n-6) fatty acids ,bioactive compounds ,regioselective synthesis ,stereoselective synthesis ,NMR ,chiral HPLC ,Omega 3 (n-3) fatty acids ,Chiral HPLC ,Organic chemistry ,Molecular Biology ,030304 developmental biology ,Omega 6 (n-6) fatty acids ,chemistry.chemical_classification ,Unspecific peroxygenases ,0303 health sciences ,biology ,010405 organic chemistry ,Agrocybe ,Stereoselective synthesis ,Regioselectivity ,Fatty acid ,Cell Biology ,biology.organism_classification ,3. Good health ,0104 chemical sciences ,Epoxylipids ,chemistry ,Stereoselectivity ,Polyunsaturated fatty acids ,Therapeutics. Pharmacology ,Docosanoid ,Polyunsaturated fatty acid - Abstract
17 páginas.- 7 figuras.- 2 tablas.- 53 referencias.- Supplementary Materials: The following are available online (at https://www.mdpi.com/article/10.3390/antiox10121888/s1), Epoxide metabolites from n-3 and n-6 polyunsaturated fatty acids arouse interest thanks to their physiological and pharmacological activities. Their chemical synthesis has significant drawbacks, and enzymes emerge as an alternative with potentially higher selectivity and greener nature. Conversion of eleven eicosanoid, docosanoid, and other n-3/n-6 fatty acids into mono-epoxides by fungal unspecific peroxygenases (UPOs) is investigated, with emphasis on the Agrocybe aegerita (AaeUPO) and Collariella virescens (rCviUPO) enzymes. GC-MS revealed the strict regioselectivity of the n-3 and n-6 reactions with AaeUPO and rCviUPO, respectively, yielding 91%-quantitative conversion into mono-epoxides at the last double bond. Then, six of these mono-epoxides were obtained at mg-scale, purified and further structurally characterized by 1H, 13C and HMBC NMR. Moreover, chiral HPLC showed that the n-3 epoxides were also formed (by AaeUPO) with total S/R enantioselectivity (ee > 99%) while the n-6 epoxides (from rCviUPO reactions) were formed in nearly racemic mixtures. The high regio- and enantioselectivity of several of these reactions unveils the synthetic utility of fungal peroxygenases in fatty acid epoxidation., Funding: This research was funded by BioBased Industries Joint Undertaking under the European Union’s Horizon 2020 Research and Innovation Programme, grant number 792063 (SusBind project; https://susbind.eu, accessed on 19 October 2021; to A.G., A.T.M. and M.H.), the BIO2017-86559-R and PID2020-118968RB-100 projects of the Spanish Ministry of Science & Innovation (co-financed by FEDER funds) to A.T.M. and A.G., respectively; the CSIC projects PIE-202040E185 (to A.G.) and PIE-202120E019 (to A.T.M.); and the CSIC SusPlast platform (to A.T.M.).
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- 2021
32. Engineering a Highly Regioselective Fungal Peroxygenase for the Synthesis of Hydroxy Fatty Acids
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Patricia Gomez de Santos, Alejandro González‐Benjumea, Angela Fernandez‐Garcia, Carmen Aranda, Yinqi Wu, Andrada But, Patricia Molina‐Espeja, Diana M. Maté, David Gonzalez‐Perez, Wuyuan Zhang, Jan Kiebist, Katrin Scheibner, Martin Hofrichter, Katarzyna Świderek, Vicent Moliner, Julia Sanz‐Aparicio, Frank Hollmann, Ana Gutiérrez, Miguel Alcalde, European Commission, Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), Comunidad de Madrid, Ministerio de Ciencia, Innovación y Universidades (España), Gómez de Santos, Patricia, González-Benjumea, Alejandro, Aranda, Carmen, Wu, Yinqi, Molina-Espeja, Patricia, Maté, Diana M., González-Pérez, David, Zhang, Wuyuan, Kiebist, Jan, Hofrichter, Martin, Świderek, Katarzyna, Moliner, Vicent, Sanz Aparicio, Julia, Hollmann, Frank, Gutiérrez Suárez, Ana, and Alcalde Galeote, Miguel
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Regioselectivity ,General Medicine ,General Chemistry ,Over-Oxidation ,Protein Engineering ,Hydroxy Fatty Acids ,Unspecific Peroxygenase ,Catalysis ,Hydroxyfatty acids - Abstract
10 páginas.- 4 figuras.- 2 tablas.- 30 referencias.- Supporting information for this article is given via a link at the end of the document https://onlinelibrary.wiley.com/doi/10.1002/anie.202217372, he hydroxylation of fatty acids is an appealing reaction in synthetic chemistry, although the lack of selective catalysts hampers its industrial implementation. Here, we have engineered a highly regioselective fungal peroxygenase for the w-1 hydroxylation of fatty acids with quenched stepwise over-oxidation. One single mutation near the Phe catalytic tripod narrowed the heme cavity, promoting a dramatic shift toward sub-terminal hydroxylation with a drop in the over-oxidation activity. While crystallographic soaking experiments and molecular dynamic simulations shed light on this unique oxidation pattern, the selective biocatalyst was produced by Pichia pastoris at 0.4 g/L in a fed-batch bioreactor and used in the preparative synthesis of 1.4 g of (w-1)-hydroxytetradecanoic acid with 95% regioselectivity and 83% ee through the (S)-enantiomer.The hydroxylation of fatty acids is an appealing reaction in synthetic chemistry, although the lack of selective catalysts hampers its industrial implementation. Here, we have engineered a highly regioselective fungal peroxygenase for the w-1 hydroxylation of fatty acids with quenched stepwise over-oxidation. One single mutation near the Phe catalytic tripod narrowed the heme cavity, promoting a dramatic shift toward sub-terminal hydroxylation with a drop in the over-oxidation activity. While crystallographic soaking experiments and molecular dynamic simulations shed light on this unique oxidation pattern, the selective biocatalyst was produced by Pichia pastoris at 0.4 g/L in a fed-batch bioreactor and used in the preparative synthesis of 1.4 g of (w-1)-hydroxytetradecanoic acid with 95% regioselectivity and 83% ee through the (S)-enantiomer., This work was supported by the European Union Project grant H2020-BBI-PPP-2015-2-720297-ENZOX2, the I+D+I PID2019-106166RB-I00-OXYWAVE Spanish project funded by the Ministerio de Ciencia e Innovación/Agencia Estatal de Investigación (AEI)/doi: 10.13039/501100011033/, the PID2020-118968RB-I00 LILI project from the Spanish MCIN/AEI/10.13039/501100011033, the ‘Comunidad de Madrid’ Synergy CAM project Y2018/BIO-4738-EVOCHIMERA-CMand the PIE-CSIC projects PIE-202040E185 and PIE-201580E042. PGS thanks the Ministry of Science, Innovation and Universities (Spain) for her FPI scholarship (BES-2017-080040) and to the Ministry of Science and Innovation for her contract as part of PTQ2020-011037 project funded by MCIN/AEI/10.13039/501100011033 within the NextGenerationEU/PRTR.DGP thanks Juan de la Cierva Incorporación contract Ref nº: IJC2020-043725-I, funded by MCIN / AEI / 10.13039/501100011033, and the EUNextGenerationEU/PRTR program. The authors thank the Synchrotron Radiation Source at Alba (Barcelona, Spain) for assistance with the BL13-XALOC beamline.
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- 2023
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