104 results on '"Paracchini S"'
Search Results
2. Pannes des instruments en chirurgie laparoscopique : causes et conséquences
- Author
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Paracchini, S., Bustos, B., Aviles, R., Bourdel, N., Canis, M., Rabishong, B., Slim, K., and Botchorishvili, R.
- Published
- 2021
- Full Text
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3. Author Correction: Discovery of 42 genome-wide significant loci associated with dyslexia
- Author
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Doust, C., Fontanillas, P., Eising, E., Gordon, S.D., Wang, Z., Alagoz, G., Molz, B., Lang, C., Pourcain, B.S., Francks, C., Marioni, R.E., Zhao, J, Paracchini, S., Talcott, J.B., Monaco, A.P., Stein, J.F., Gruen, J.R., Olson, R.K., Willcutt, E.G., DeFries, J.C., Pennington, B.F., Smith, S.D., Wright, M.J., Martin, N.G., Auton, A., Bates, T.C., Fisher, S.E., Luciano, M., Doust, C., Fontanillas, P., Eising, E., Gordon, S.D., Wang, Z., Alagoz, G., Molz, B., Lang, C., Pourcain, B.S., Francks, C., Marioni, R.E., Zhao, J, Paracchini, S., Talcott, J.B., Monaco, A.P., Stein, J.F., Gruen, J.R., Olson, R.K., Willcutt, E.G., DeFries, J.C., Pennington, B.F., Smith, S.D., Wright, M.J., Martin, N.G., Auton, A., Bates, T.C., Fisher, S.E., and Luciano, M.
- Abstract
Item does not contain fulltext
- Published
- 2023
4. Hypothesis-driven genome-wide association studies provide novel insights into genetics of reading disabilities
- Author
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Price, K.M., Wigg, K.G., Eising, E., Feng, Y, Blokland, K., Wilkinson, M., Kerr, E.N., Guger, S.L., Abbondanza, F., Allegrini, A.G., Andlauer, T.F.M., Bates, T.C., Bernard, M., Bonte, M., Boomsma, D.I., Bourgeron, T., Brandeis, D., Carreiras, M., Ceroni, F., Csépe, V., Dale, P.S., DeFries, J.C., Jong, P.F. de, Démonet, J.F., Zeeuw, E.L. de, Franken, M.-C.J., Francks, C., Gerritse, M.L., Gialluisi, A., Gordon, S.D., Gruen, J.R., Hayiou-Thomas, M.E., Hernández-Cabrera, J., Hottenga, J.-J., Hulme, C., Jansen, P.R., Kere, J., Koomar, T., Landerl, K., Leonard, G.T., Liao, Z., Luciano, M., Lyytinen, H., Martin, N.G., Martinelli, A., Maurer, U., Michaelson, J.J., Mirza-Schreiber, N., Moll, K., Monaco, A.P., Morgan, A.T., Müller-Myhsok, B., Newbury, D.F., Nöthen, M.M., Olson, R.K., Paracchini, S., Paus, T., Pausova, Z., Pennell, C.E., Pennington, B.F., Plomin, R.J., Ramus, F., Reilly, S., Richer, L., Rimfeld, K., Schulte-Körne, G., Shapland, C.Y., Simpson, N.H., Smith, S.D., Snowling, M.J., St Pourcain, B., Stein, J.F., Talcott, J.B., Tiemeier, H., Tomblin, J.B., Truong, D.T., Bergen, E. van, Schroeff, M.P. van der, Donkelaar, M.M.J. van, Verhoef, E., Wang, C.A., Watkins, K.E., Whitehouse, A.J.O., Willcutt, E.G., Wright, M.J., Zhu, G., Fisher, S.E., Lovett, M.W., Strug, L.J., Barr, C.L., University of St Andrews. School of Medicine, University of St Andrews. Centre for Biophotonics, University of St Andrews. Biomedical Sciences Research Complex, University of St Andrews. Institute of Behavioural and Neural Sciences, University of St Andrews. St Andrews Bioinformatics Unit, University of St Andrews. Cellular Medicine Division, STEMM - Stem Cells and Metabolism Research Program, Juha Kere / Principal Investigator, Research Programs Unit, University of Helsinki, Consortium, Quantitative Trait Working Group of the GenLang, European Commission, Otorhinolaryngology and Head and Neck Surgery, Child and Adolescent Psychiatry / Psychology, RS: FPN CN 7, Language, Biological Psychology, Amsterdam Reproduction & Development, APH - Mental Health, APH - Methodology, APH - Health Behaviors & Chronic Diseases, APH - Personalized Medicine, Complex Trait Genetics, Amsterdam Neuroscience - Complex Trait Genetics, LEARN! - Educational neuroscience, learning and development, and Human genetics
- Subjects
Neuroinformatics ,single nucleotide ,Candidate gene ,Autism Spectrum Disorder ,Developmental dyslexia ,autism spectrum disorder ,QH426 Genetics ,Polymorphism, Single Nucleotide ,Neuronal migration ,3124 Neurology and psychiatry ,polymorphism ,Dyslexia ,Cellular and Molecular Neuroscience ,All institutes and research themes of the Radboud University Medical Center ,problem solving ,SDG 3 - Good Health and Well-being ,dyslexia ,Humans ,Kiaa0319 ,Family ,humans ,Children ,QH426 ,Problem Solving ,Biological Psychiatry ,MCC ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,genome-wide association study ,Dyx1c1 ,Plasma-membrane ,3rd-DAS ,Psychiatry and Mental health ,Susceptibility ,RC0321 ,SDG 4 - Quality Education ,RC0321 Neuroscience. Biological psychiatry. Neuropsychiatry ,Genome-Wide Association Study ,Knockout mice - Abstract
Reading Disability (RD) is often characterized by difficulties in the phonology of the language. While the molecular mechanisms underlying it are largely undetermined, loci are being revealed by genome-wide association studies (GWAS). In a previous GWAS for word reading (Price, 2020), we observed that top single-nucleotide polymorphisms (SNPs) were located near to or in genes involved in neuronal migration/axon guidance (NM/AG) or loci implicated in autism spectrum disorder (ASD). A prominent theory of RD etiology posits that it involves disturbed neuronal migration, while potential links between RD-ASD have not been extensively investigated. To improve power to identify associated loci, we up-weighted variants involved in NM/AG or ASD, separately, and performed a new Hypothesis-Driven (HD)–GWAS. The approach was applied to a Toronto RD sample and a meta-analysis of the GenLang Consortium. For the Toronto sample (n = 624), no SNPs reached significance; however, by gene-set analysis, the joint contribution of ASD-related genes passed the threshold (p~1.45 × 10–2, threshold = 2.5 × 10–2). For the GenLang Cohort (n = 26,558), SNPs in DOCK7 and CDH4 showed significant association for the NM/AG hypothesis (sFDR q = 1.02 × 10–2). To make the GenLang dataset more similar to Toronto, we repeated the analysis restricting to samples selected for reading/language deficits (n = 4152). In this GenLang selected subset, we found significant association for a locus intergenic between BTG3-C21orf91 for both hypotheses (sFDR q < 9.00 × 10–4). This study contributes candidate loci to the genetics of word reading. Data also suggest that, although different variants may be involved, alleles implicated in ASD risk may be found in the same genes as those implicated in word reading. This finding is limited to the Toronto sample suggesting that ascertainment influences genetic associations., Translational Psychiatry, 12 (1), ISSN:2158-3188
- Published
- 2022
5. Genome-wide analyses of individual differences in quantitatively assessed reading- and language-related skills in up to 34,000 people
- Author
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Eising, E., Mirza-Schreiber, N., Zeeuw, E.L. de, Wang, C.A., Truong, D.T., Allegrini, A.G., Shapland, C.Y., Zhu, G., Wigg, K.G., Gerritse, M.L., Molz, B., Alagöz, G., Gialluisi, A., Abbondanza, F., Rimfeld, K., Donkelaar, M.M.J. van, Liao, Z., Jansen, P.R., Andlauer, T.F.M., Bates, T.C., Bernard, M., Blokland, K., Bonte, M., Børglum, A.D., Bourgeron, T., Brandeis, D., Ceroni, F., Csépe, V., Dale, P.S., Jong, P.F. de, DeFries, J.C., Démonet, J.F., Demontis, D., Feng, Yu, Gordon, S.D.S., Guger, S.L., Hayiou-Thomas, M.E., Hernández-Cabrera, J.A., Hottenga, J.J., Hulme, C., Kere, J., Kerr, E.N., Koomar, T., Landerl, K., Leonard, G.T., Lovett, M.W., Lyytinen, H., Martin, N.G., Martinelli, A., Maurer, U., Michaelson, J.J., Moll, K., Monaco, A.P., Morgan, A.T., Nöthen, M.M., Pausova, Z., Pennell, C.E., Pennington, B.F., Price, K.M., Rajagopal, V.M., Ramus, F., Richer, L., Simpson, N.H., Smith, S.D., Snowling, M.J., Stein, J., Strug, L.J., Talcott, J.B., Tiemeier, H., Schroeff, M.P. van der, Verhoef, E., Watkins, K.E., Wilkinson, M., Wright, M.J., Barr, C.L., Boomsma, D.I., Carreiras, M., Franken, M.J., Gruen, J.R., Luciano, M., Müller-Myhsok, B., Newbury, D.F., Olson, R.K., Paracchini, S., Paus, T., Plomin, R., Reilly, S., Schulte-Körne, G., Tomblin, J.B., Bergen, E. van, Whitehouse, A.J.O., Willcutt, E.G., Pourcain, B. St, Francks, C., Fisher, S.E., St Pourcain, B., Génétique humaine et fonctions cognitives - Human Genetics and Cognitive Functions (GHFC (UMR_3571 / U-Pasteur_1)), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Laboratoire de sciences cognitives et psycholinguistique (LSCP), Département d'Etudes Cognitives - ENS Paris (DEC), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École des hautes études en sciences sociales (EHESS)-Centre National de la Recherche Scientifique (CNRS), Human genetics, APH - Aging & Later Life, APH - Mental Health, Biological Psychology, Complex Trait Genetics, Amsterdam Neuroscience - Complex Trait Genetics, APH - Health Behaviors & Chronic Diseases, APH - Personalized Medicine, Amsterdam Reproduction & Development, APH - Methodology, LEARN! - Educational neuroscience, learning and development, Child and Adolescent Psychiatry / Psychology, Otorhinolaryngology and Head and Neck Surgery, STEMM - Stem Cells and Metabolism Research Program, Juha Kere / Principal Investigator, Research Programs Unit, University of Helsinki, Language, RS: FPN CN 7, The Royal Society, University of St Andrews. Cellular Medicine Division, University of St Andrews. School of Medicine, University of St Andrews. Centre for Biophotonics, University of St Andrews. Biomedical Sciences Research Complex, University of St Andrews. Institute of Behavioural and Neural Sciences, and University of St Andrews. St Andrews Bioinformatics Unit
- Subjects
Neuroinformatics ,Adult ,kieli ja kielet ,Adolescent ,Individuality ,QH426 Genetics ,Polymorphism, Single Nucleotide ,lukeminen ,Language in Interaction ,Young Adult ,SDG 3 - Good Health and Well-being ,RA0421 ,reading ,RA0421 Public health. Hygiene. Preventive Medicine ,Humans ,Speech ,study ,Polymorphism ,Reading j ,Preschool ,Child ,QH426 ,perinnöllisyys ,Genome-wide Association Study ,Language ,Meta-analysis ,Reading ,MCC ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,genome-wide association study ,language ,Multidisciplinary ,meta-analyysi ,1184 Genetics, developmental biology, physiology ,kielitaito ,[SDV.NEU.SC]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]/Cognitive Sciences ,DAS ,Single Nucleotide ,meta-analysis ,Genetic Loci ,Child, Preschool ,Genome-Wide Association Study ,perimä ,lukutaito ,genome-wide association ,SDG 4 - Quality Education - Abstract
Published August 23, 2022 The use of spoken and written language is a fundamental human capacity. Individual differences in reading- and language-related skills are influenced by genetic variation, with twin-based heritability estimates of 30 to 80% depending on the trait. The genetic architecture is complex, heterogeneous, and multifactorial, but investigations of contributions of single-nucleotide polymorphisms (SNPs) were thus far underpowered. We present a multicohort genome-wide association study (GWAS) of five traits assessed individually using psychometric measures (word reading, nonword reading, spelling, phoneme awareness, and nonword repetition) in samples of 13,633 to 33,959 participants aged 5 to 26 y. We identified genome-wide significant association with word reading (rs11208009, P = 1.098 × 1028) at a locus that has not been associated with intelligence or educational attainment. All five reading-/language-related traits showed robust SNP heritability, accounting for 13 to 26% of trait variability. Genomic structural equation modeling revealed a shared genetic factor explaining most of the variation in word/nonword reading, spelling, and phoneme awareness, which only partially overlapped with genetic variation contributing to nonword repetition, intelligence, and educational attainment. A multivariate GWAS of word/nonword reading, spelling, and phoneme awareness maximized power for follow-up investigation. Genetic correlation analysis with neuroimaging traits identified an association with the surface area of the banks of the left superior temporal sulcus, a brain region linked to the processing of spoken and written language. Heritability was enriched for genomic elements regulating gene expression in the fetal brain and in chromosomal regions that are depleted of Neanderthal variants. Together, these results provide avenues for deciphering the biological underpinnings of uniquely human traits. We thank all the children, twins, families, and participants who took part and are taking part in the 22 cohorts whose data contributed to these GWAS meta-analyses; the staff working on the different cohorts, including volunteers, study coordinators, interviewers, teachers, nurses, research scientists, general practitioners, midwives, psychologists, psychometrists, computer and laboratory technicians, and colleagues who assisted in the quality control and preparation of the imputed GWAS data; and the pharmacies and hospitals that were involved. B.M., B.M.-M., B.S.P., C.F., E.E., E.V., G.A., M.v.D., and S.E.F. are supported by the Max Planck Society. A.G. and T.F.M.A. were supported by the Munich Cluster for Systems Neurology (SyNergy), and A.G. was supported by Fondazione Umberto Veronesi. A.T.M. is supported by National Health and Medical Research Council of Australia (NHMRC) Grants 1105008 and 1195955 and Centre of Research Excellence Grant 1116976. A.J.O.W. is supported by NHMRC Grant 1173896. B.S.P. is supported by Simons Foundation Autism Research Initiative Grant 514787. C.Y.S. works in the Medical Research Council Integrative Epidemiology Unit at the University of Bristol (MC_UU_00011/3). D.I.B. acknowledges Royal Netherlands Academy of Science Professor Award PAH/6635. E.E. is supported by NIH Grant R01DC016977. E.G.W. and J.R.G. are supported by National Institute of Child Health and Human Development (NICHD) Grant P50 HD 27802. F.R. is supported by Agence Nationale de la Recherche Grants ANR-06-NEURO-019-01, ANR-17-EURE-0017 IEC, ANR-10-IDEX-0001-02 PSL, and ANR-11-BSV4-014-01 and European Commission Grant LSHM-CT-2005-018696. H.T. is supported by the Netherlands Organization for Scientific Research (NWO) and Netherlands Organisation for Health Research and Development (ZonMW) Grant VICI 016.VICI.170.200. J.C.D. was supported by NICHD Grant P50 HD 27802. J.J.M., J.B.To., and T.K. were supported by NIH Grant R01 DC014489. K.M.P. was supported by the Hospital for Sick Children Research Training Program (Restracomp). K.R. is supported by a Sir Henry Wellcome Postdoctoral Fellowship (213514/Z/18/Z). M.J.S. is supported by Wellcome Trust Grant WT082032MA. S.P. and F.A. are supported by Royal Society Grants UF150663 and RGF\EA\180141. T.B. is supported by Institut Pasteur, the Bettencourt-Schueller Foundation, and Université de Paris. The Adolescent Brain Cognitive Development Study is supported by the NIH and additional federal partners (NIH Grants U01DA041048, U01DA050989, U01DA051016, U01DA041022, U01DA051018, U01DA051037, U01DA050987, U01DA041174, U01DA041106, U01DA041117, U01DA041028, U01DA041134, U01DA050988, U01DA051039, U01DA041156, U01DA041025, U01DA041120, U01DA051038, U01DA041148, U01DA041093, U01DA041089, U24DA041123, and U24DA041147). The Aston Cohort was supported by funding from European Union (EU) Horizon 2020 Programme 641652 and Waterloo Foundation Grant 797/17290. The St. Andrews Bioinformatics Unit is funded by Wellcome Trust Grants 105621/Z/14/Z and 204821/Z/16/Z. ALSPAC is supported by UK Medical Research Council and Wellcome Grant 217065/Z/19/Z and the University of Bristol. A comprehensive list of grant funding is available on the ALSPAC website (http://www.bristol.ac.uk/alspac/external/documents/grant-acknowledgements.pdf). The Basque Center on Cognition, Brain and Language (BCBL) cohort was supported by the Basque Government through the Basic Excellence Research Centre program and the Agencia Estatal de Investigación through BCBL Severo Ochoa excellence accreditation. The Brisbane Adolescent Twin Sample was supported by Australian Research Council Grants A7960034, A79906588, A79801419, DP0212016, and DP0343921, with genotyping funded by the NHMRC Grant 389891. The Colorado Learning Disabilities Research Center cohort was supported by NICHD Grant P50 HD 27802. The Early Language in Victoria Study was supported by NHMRC Grant 436958. The Familial Influences on Literacy Abilities cohort is supported by the University of Amsterdam, the Max Planck Institue Nijmegen, and NWO Grants Rubicon 446-12-005 and VENI 451-15-017. The GRaD study was funded by the Manton Foundation, NIH Grants P50-HD027802 and K99-HD094902, and the Lambert Family. NeuroDys was funded by an EU Sixth Framework Program grant to the NeuroDys Consortium, Swiss National Science Foundation Grant 32-108130, and Austrian Science Fund Grant 18351-B02. The Netherlands Twin Register is funded by NWO Grants 480-04-004, 481-08-011, 056-32-010, 024.001.003, 480-15-001/674, 184.021.007, 184.033.111, and 56-464-14192; ZonMW Grants 911-09-032 and 912-10-020; the Amsterdam Public Health and Amsterdam Reproduction and Development Research Institutes; European Science Council Grant ERC Advanced 230374; EU Seventh Framework Program (FP7) Grant FP7/2007-2013: 602768; National Institute of Mental Health (NIMH) Grants U24 MH068457-06, R01 MH58799-03, and 1RC2 MH089995; and the Avera Institute for Human Genetics. The Pediatric Imaging, Neurocognition, and Genetics cohort is funded by NIH Grant RC2DA029475, the National Institute on Drug Abuse, and the Eunice Kennedy Shriver NICHD. The Philadelphia Neurodevelopmental Cohort is funded by NIH Grants RC2MH089983 and RC2MH089924, an institutional development award to the Center for Applied Genomics from The Children’s Hospital of Philadelphia, and a donation from Adele and Daniel Kubert and thanks the NIH data repository. The Raine study was supported by long-term funding from NHMRC Grants 572613, 403981, and 1059711 and Canadian Institutes of Health Research (CIHR) Grant MOP-82893. Funding was also provided by the University of Western Australia, Curtin University, the Women and Infants Research Foundation, the Telethon Kids Institute, Edith Cowan University, Murdoch University, the University of Notre Dame Australia, and the Raine Medical Research Foundation. The Raine study analyses were supported by the Pawsey Supercomputing Centre with funding from the Australian Government and the Government of Western Australia. The Saguenay Youth Study is supported by the CIHR, the Heart and Stroke Foundation of Quebec, and the Canadian Foundation for Innovation. The SLI Consortium was funded by Wellcome Trust Grant 076566 and UK Medical Research Council Grant G1000569. The Twins Early Development Study is supported by UK Medical Research Council Grants MR/V012878/1 and MR/M021475/1, NIH Grant AG046938, and the EU FP7 grant FP7/2007-2013/: 602768. Toronto was supported by CIHR Grant MOP-133440. UK Dyslexia was supported by Wellcome Trust Grants 076566/Z/05/Z and 075491/Z/04, Waterloo Foundation Grant 797–1720, EU Grant 018696, and Royal Society Grant UF100463. The York cohort was funded by Wellcome Trust Grant 082036/B/07/Z. We acknowledge iPSYCH for sharing their summary statistics. The iPSYCH team was supported by Lundbeck Foundation Grants R102-A9118, R155-2014-1724, and R248-2017-2003; NIMH Grant 1U01MH109514-01; and the Universities and University Hospitals of Aarhus and Copenhagen. The Danish National Biobank resource was supported by the Novo Nordisk Foundation. High-performance computer capacity was provided by the Center for Genomics and Personalized Medicine and the Centre for Integrative Sequencing, Aarhus University, Denmark.
- Published
- 2022
6. Discovery of 42 genome-wide significant loci associated with dyslexia
- Author
-
Doust, C., Fontanillas, P., Eising, E., Gordon, S.D., Wang, Z, Alagoz, G., Molz, B., St Pourcain, B., Francks, C., Marioni, R.E., Zhao, J, Paracchini, S., Talcott, J.B., Monaco, A.P., Stein, J.F., Gruen, J.R., Olson, R.K., Willcutt, E.G., DeFries, J.C., Pennington, B.F., Smith, S.D., Wright, M.J., Martin, N.G., Auton, A., Bates, T.C., Fisher, S.E., Luciano, M., Doust, C., Fontanillas, P., Eising, E., Gordon, S.D., Wang, Z, Alagoz, G., Molz, B., St Pourcain, B., Francks, C., Marioni, R.E., Zhao, J, Paracchini, S., Talcott, J.B., Monaco, A.P., Stein, J.F., Gruen, J.R., Olson, R.K., Willcutt, E.G., DeFries, J.C., Pennington, B.F., Smith, S.D., Wright, M.J., Martin, N.G., Auton, A., Bates, T.C., Fisher, S.E., and Luciano, M.
- Abstract
Contains fulltext : 284950.pdf (Publisher’s version ) (Open Access)
- Published
- 2022
7. Genome-wide analyses of individual differences in quantitatively assessed reading- and language-related skills in up to 34,000 people
- Author
-
Eising, E, Mirza-Schreiber, N, de Zeeuw, EL, Wang, CA, Truong, DT, Allegrini, AG, Shapland, CY, Zhu, G, Wigg, KG, Gerritse, ML, Molz, B, Alagoz, G, Gialluisi, A, Abbondanza, F, Rimfeld, K, van Donkelaar, M, Liao, Z, Jansen, PR, Andlauer, TFM, Bates, TC, Bernard, M, Blokland, K, Bonte, M, Borglum, AD, Bourgeron, T, Brandeis, D, Ceronihh, F, Csepe, V, Dale, PS, de Jong, PF, DeFries, JC, Demonet, J-F, Demontis, D, Feng, Y, Gordon, SD, Guger, SL, Hayiou-Thomas, ME, Hernandez-Cabrera, JA, Hottenga, J-J, Hulme, C, Kere, J, Kerr, EN, Koomar, T, Landerl, K, Leonard, GT, Lovett, MW, Lyytinen, H, Martin, NG, Martinelli, A, Maurer, U, Michaelson, JJ, Moll, K, Monaco, AP, Morgan, AT, Nothen, MM, Pausova, Z, Pennell, CE, Pennington, BF, Price, KM, Rajagopal, VM, Ramus, F, Richer, L, Simpson, NH, Smith, SD, Snowling, MJ, Stein, J, Struguuu, LJ, Talcott, JB, Tiemeier, H, van der Schroeff, MP, Verhoef, E, Watkins, KE, Wilkinson, M, Wright, MJ, Barr, CL, Boomsma, D, Carreiras, M, Franken, M-CJ, Gruen, JR, Luciano, M, Muller-Myhsok, B, Newbury, DF, Olson, RK, Paracchini, S, Paus, T, Plomin, R, Reilly, S, Schulte-Korn, G, Tomblin, JB, Bergen, E, Whitehouse, AJO, Willcutt, EG, St Pourcain, B, Francks, C, Fisher, SE, Eising, E, Mirza-Schreiber, N, de Zeeuw, EL, Wang, CA, Truong, DT, Allegrini, AG, Shapland, CY, Zhu, G, Wigg, KG, Gerritse, ML, Molz, B, Alagoz, G, Gialluisi, A, Abbondanza, F, Rimfeld, K, van Donkelaar, M, Liao, Z, Jansen, PR, Andlauer, TFM, Bates, TC, Bernard, M, Blokland, K, Bonte, M, Borglum, AD, Bourgeron, T, Brandeis, D, Ceronihh, F, Csepe, V, Dale, PS, de Jong, PF, DeFries, JC, Demonet, J-F, Demontis, D, Feng, Y, Gordon, SD, Guger, SL, Hayiou-Thomas, ME, Hernandez-Cabrera, JA, Hottenga, J-J, Hulme, C, Kere, J, Kerr, EN, Koomar, T, Landerl, K, Leonard, GT, Lovett, MW, Lyytinen, H, Martin, NG, Martinelli, A, Maurer, U, Michaelson, JJ, Moll, K, Monaco, AP, Morgan, AT, Nothen, MM, Pausova, Z, Pennell, CE, Pennington, BF, Price, KM, Rajagopal, VM, Ramus, F, Richer, L, Simpson, NH, Smith, SD, Snowling, MJ, Stein, J, Struguuu, LJ, Talcott, JB, Tiemeier, H, van der Schroeff, MP, Verhoef, E, Watkins, KE, Wilkinson, M, Wright, MJ, Barr, CL, Boomsma, D, Carreiras, M, Franken, M-CJ, Gruen, JR, Luciano, M, Muller-Myhsok, B, Newbury, DF, Olson, RK, Paracchini, S, Paus, T, Plomin, R, Reilly, S, Schulte-Korn, G, Tomblin, JB, Bergen, E, Whitehouse, AJO, Willcutt, EG, St Pourcain, B, Francks, C, and Fisher, SE
- Abstract
The use of spoken and written language is a fundamental human capacity. Individual differences in reading- and language-related skills are influenced by genetic variation, with twin-based heritability estimates of 30 to 80% depending on the trait. The genetic architecture is complex, heterogeneous, and multifactorial, but investigations of contributions of single-nucleotide polymorphisms (SNPs) were thus far underpowered. We present a multicohort genome-wide association study (GWAS) of five traits assessed individually using psychometric measures (word reading, nonword reading, spelling, phoneme awareness, and nonword repetition) in samples of 13,633 to 33,959 participants aged 5 to 26 y. We identified genome-wide significant association with word reading (rs11208009, P = 1.098 × 10-8) at a locus that has not been associated with intelligence or educational attainment. All five reading-/language-related traits showed robust SNP heritability, accounting for 13 to 26% of trait variability. Genomic structural equation modeling revealed a shared genetic factor explaining most of the variation in word/nonword reading, spelling, and phoneme awareness, which only partially overlapped with genetic variation contributing to nonword repetition, intelligence, and educational attainment. A multivariate GWAS of word/nonword reading, spelling, and phoneme awareness maximized power for follow-up investigation. Genetic correlation analysis with neuroimaging traits identified an association with the surface area of the banks of the left superior temporal sulcus, a brain region linked to the processing of spoken and written language. Heritability was enriched for genomic elements regulating gene expression in the fetal brain and in chromosomal regions that are depleted of Neanderthal variants. Together, these results provide avenues for deciphering the biological underpinnings of uniquely human traits.
- Published
- 2022
8. Hypothesis-driven genome-wide association studies provide novel insights into genetics of reading disabilities
- Author
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Price, KM, Wigg, KG, Eising, E, Feng, Y, Blokland, K, Wilkinson, M, Kerr, EN, Guger, SL, Abbondanza, F, Allegrini, AG, Andlauer, TFM, Bates, TC, Bernard, M, Bonte, M, Boomsma, DI, Bourgeron, T, Brandeis, D, Carreiras, M, Ceroni, F, Csepe, V, Dale, PS, DeFries, JC, de Jong, PF, Demonet, JF, de Zeeuw, EL, Franken, M-CJ, Francks, C, Gerritse, M, Gialluisi, A, Gordon, SD, Gruen, JR, Hayiou-Thomas, ME, Hernandez-Cabrera, J, Hottenga, J-J, Hulme, C, Jansen, PR, Kere, J, Koomar, T, Landerl, K, Leonard, GT, Liao, Z, Luciano, M, Lyytinen, H, Martin, NG, Martinelli, A, Maurer, U, Michaelson, JJ, Mirza-Schreiber, N, Moll, K, Monaco, AP, Morgan, AT, Mueller-Myhsok, B, Newbury, DF, Noethen, MM, Olson, RK, Paracchini, S, Paus, T, Pausova, Z, Pennell, CE, Pennington, BF, Plomin, RJ, Ramus, F, Reilly, S, Richer, L, Rimfeld, K, Schulte-Korne, G, Shapland, CY, Simpson, NH, Smith, SD, Snowling, MJ, St Pourcain, B, Stein, JF, Talcott, JB, Tiemeier, H, Tomblin, JB, Truong, DT, van Bergen, E, van der Schroeff, MP, Van Donkelaar, M, Verhoef, E, Wang, CA, Watkins, KE, Whitehouse, AJO, Willcutt, EG, Wright, MJ, Zhu, G, Fisher, SE, Lovett, MW, Strug, LJ, Barr, CL, Price, KM, Wigg, KG, Eising, E, Feng, Y, Blokland, K, Wilkinson, M, Kerr, EN, Guger, SL, Abbondanza, F, Allegrini, AG, Andlauer, TFM, Bates, TC, Bernard, M, Bonte, M, Boomsma, DI, Bourgeron, T, Brandeis, D, Carreiras, M, Ceroni, F, Csepe, V, Dale, PS, DeFries, JC, de Jong, PF, Demonet, JF, de Zeeuw, EL, Franken, M-CJ, Francks, C, Gerritse, M, Gialluisi, A, Gordon, SD, Gruen, JR, Hayiou-Thomas, ME, Hernandez-Cabrera, J, Hottenga, J-J, Hulme, C, Jansen, PR, Kere, J, Koomar, T, Landerl, K, Leonard, GT, Liao, Z, Luciano, M, Lyytinen, H, Martin, NG, Martinelli, A, Maurer, U, Michaelson, JJ, Mirza-Schreiber, N, Moll, K, Monaco, AP, Morgan, AT, Mueller-Myhsok, B, Newbury, DF, Noethen, MM, Olson, RK, Paracchini, S, Paus, T, Pausova, Z, Pennell, CE, Pennington, BF, Plomin, RJ, Ramus, F, Reilly, S, Richer, L, Rimfeld, K, Schulte-Korne, G, Shapland, CY, Simpson, NH, Smith, SD, Snowling, MJ, St Pourcain, B, Stein, JF, Talcott, JB, Tiemeier, H, Tomblin, JB, Truong, DT, van Bergen, E, van der Schroeff, MP, Van Donkelaar, M, Verhoef, E, Wang, CA, Watkins, KE, Whitehouse, AJO, Willcutt, EG, Wright, MJ, Zhu, G, Fisher, SE, Lovett, MW, Strug, LJ, and Barr, CL
- Abstract
Reading Disability (RD) is often characterized by difficulties in the phonology of the language. While the molecular mechanisms underlying it are largely undetermined, loci are being revealed by genome-wide association studies (GWAS). In a previous GWAS for word reading (Price, 2020), we observed that top single-nucleotide polymorphisms (SNPs) were located near to or in genes involved in neuronal migration/axon guidance (NM/AG) or loci implicated in autism spectrum disorder (ASD). A prominent theory of RD etiology posits that it involves disturbed neuronal migration, while potential links between RD-ASD have not been extensively investigated. To improve power to identify associated loci, we up-weighted variants involved in NM/AG or ASD, separately, and performed a new Hypothesis-Driven (HD)-GWAS. The approach was applied to a Toronto RD sample and a meta-analysis of the GenLang Consortium. For the Toronto sample (n = 624), no SNPs reached significance; however, by gene-set analysis, the joint contribution of ASD-related genes passed the threshold (p~1.45 × 10-2, threshold = 2.5 × 10-2). For the GenLang Cohort (n = 26,558), SNPs in DOCK7 and CDH4 showed significant association for the NM/AG hypothesis (sFDR q = 1.02 × 10-2). To make the GenLang dataset more similar to Toronto, we repeated the analysis restricting to samples selected for reading/language deficits (n = 4152). In this GenLang selected subset, we found significant association for a locus intergenic between BTG3-C21orf91 for both hypotheses (sFDR q < 9.00 × 10-4). This study contributes candidate loci to the genetics of word reading. Data also suggest that, although different variants may be involved, alleles implicated in ASD risk may be found in the same genes as those implicated in word reading. This finding is limited to the Toronto sample suggesting that ascertainment influences genetic associations.
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- 2022
9. Low-Pressure Laparoscopy Using the AirSeal System versus Standard Insufflation in Early-Stage Endometrial Cancer: A Multicenter, Retrospective Study (ARIEL Study)
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Buda, A., Di Martino, G., Borghese, M., Restaino, S., Surace, A., Puppo, A., Paracchini, S., Ferrari, D., Perotto, S., Novelli, A., De Ponti, E., Borghi, C., Fanfani, Francesco, Fruscio, R., Fanfani F. (ORCID:0000-0003-1991-7284), Buda, A., Di Martino, G., Borghese, M., Restaino, S., Surace, A., Puppo, A., Paracchini, S., Ferrari, D., Perotto, S., Novelli, A., De Ponti, E., Borghi, C., Fanfani, Francesco, Fruscio, R., and Fanfani F. (ORCID:0000-0003-1991-7284)
- Abstract
The aim of our study was to evaluate the benefits of a low-pressure insufflation system (AirSeal) vs. a standard insufflation system in terms of anesthesiologists’ parameters and postoperative pain in patients undergoing laparoscopic surgery for early-stage endometrial cancer. This retrospective study involved five tertiary centers and included 152 patients with apparent early-stage disease who underwent laparoscopic surgical staging with either the low-pressure AirSeal system (8–10 mmHg, n = 84) or standard laparoscopic insufflation (10–12 mmHg, n = 68). All the intraoperative anesthesia variables evaluated (systolic blood pressure, end-tidal CO2, peak airway pressure) were significantly lower in the AirSeal group. We recorded a statistically significant difference between the two groups in the median NRS scores for global pain recorded at 4, 8, and 24 h, and for overall shoulder pain after surgery. Significantly more women in the AirSeal group were also discharged on day one compared to the standard group. All such results were confirmed when analyzing the subgroup of women with a BMI >30 kg/m2. In conclusion, according to our preliminary study, low-pressure laparoscopy represents a valid alternative to standard laparoscopy and could facilitate the development of outpatient surgery.
- Published
- 2022
10. Low-Pressure Laparoscopy Using the AirSeal System versus Standard Insufflation in Early-Stage Endometrial Cancer: A Multicenter, Retrospective Study (ARIEL Study)
- Author
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Buda, A, Di Martino, G, Borghese, M, Restaino, S, Surace, A, Puppo, A, Paracchini, S, Ferrari, D, Perotto, S, Novelli, A, De Ponti, E, Borghi, C, Fanfani, F, Fruscio, R, Buda, A, Di Martino, G, Borghese, M, Restaino, S, Surace, A, Puppo, A, Paracchini, S, Ferrari, D, Perotto, S, Novelli, A, De Ponti, E, Borghi, C, Fanfani, F, and Fruscio, R
- Abstract
The aim of our study was to evaluate the benefits of a low-pressure insufflation system (AirSeal) vs. a standard insufflation system in terms of anesthesiologists’ parameters and postoperative pain in patients undergoing laparoscopic surgery for early-stage endometrial cancer. This retrospective study involved five tertiary centers and included 152 patients with apparent early-stage disease who underwent laparoscopic surgical staging with either the low-pressure AirSeal system (8–10 mmHg, n = 84) or standard laparoscopic insufflation (10–12 mmHg, n = 68). All the intraoperative anesthesia variables evaluated (systolic blood pressure, end-tidal CO2, peak airway pressure) were significantly lower in the AirSeal group. We recorded a statistically significant difference between the two groups in the median NRS scores for global pain recorded at 4, 8, and 24 h, and for overall shoulder pain after surgery. Significantly more women in the AirSeal group were also discharged on day one compared to the standard group. All such results were confirmed when analyzing the subgroup of women with a BMI >30 kg/m2. In conclusion, according to our preliminary study, low-pressure laparoscopy represents a valid alternative to standard laparoscopy and could facilitate the development of outpatient surgery.
- Published
- 2022
11. Advances in Dyslexia Genetics—New Insights Into the Role of Brain Asymmetries
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Paracchini, S., primary, Diaz, R., additional, and Stein, J., additional
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- 2016
- Full Text
- View/download PDF
12. Evaluation of the laparoscopic component of GESEA Programme in two different groups: Obstetrics and Gynaecology Residents versus Participants in the Annual GESEA Diploma Course in Clermont Ferrand, France
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Bustos B, Avilés R, Paracchini S, Pereira B, Revaz Botchorishvili, and Rabischong B
- Subjects
Surgical education ,GESEA Certification ,Laparoscopic training courses ,Original Article ,Practical skills ,Minimally Invasive Surgery - Abstract
Background Structured laparoscopic training courses are important in surgical education. Different programmes have been proposed, but there is currently no evidence available comparing the performance of specialists versus residents in Obstetrics and Gynaecology at these courses. Objective To evaluate the impact of the laparoscopic component of Gynaecological Endoscopic Surgical Education and Assessment (GESEA) Training and Certification courses in two different populations. Materials and methods Prospective cohort study. Two groups were analysed - participants of the Residents’ Courses and participants of the Annual Francophone GESEA Diploma Course. Both groups were evaluated using the GESEA Level 1 laparoscopic standardised exercises and carried out in the International Center of Endoscopic Surgery (CICE), Clermont Ferrand, France in 2019. Results 57 French residents and 69 participants of the Annual GESEA Diploma were evaluated. The average age of participants in the Residents’ Course was lower than those in the Annual Diploma Course (28.4±1.6 versus 35.2±8.0 years, p
- Published
- 2020
13. Lack of replication for the myosin-18B association with mathematical ability in independent cohorts
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Pettigrew, K. A., Fajutrao Valles, S. F., Moll, K., Northstone, K., Ring, S., Pennell, C., Wang, C., Leavett, R., Hayiou-Thomas, M. E., Thompson, P., Simpson, N. H., Fisher, S. E., Whitehouse, A. J. O., Snowling, M. J., Newbury, D. F., and Paracchini, S.
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- 2015
- Full Text
- View/download PDF
14. Hand preference and Mathematical Learning Difficulties: New data from Greece, the United Kingdom, and Germany and two meta-analyses of the literature
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Papadatou-Pastou, M. Panagiotidou, D.-A. Abbondanza, F. Fischer, U. Paracchini, S. Karagiannakis, G.
- Abstract
Increased rates of atypical handedness are observed in neurotypical individuals who are low-performing in mathematical tasks as well as in individuals with special educational needs, such as dyslexia. This is the first investigation of handedness in individuals with Mathematical Learning Difficulties (MLD). We report three new studies (N = 134; N = 1,893; N = 153) and two sets of meta-analyses (22 studies; N = 3,667). No difference in atypical hand preference between MLD and Typically Achieving (TA) individuals was found when handedness was assessed with self-report questionnaires, but weak evidence of a difference was found when writing hand was the handedness criterion in Study 1 (p =.049). Similarly, when combining data meta-analytically, no hand preference differences were detected. We suggest that: (i) potential handedness effects require larger samples, (ii) direction of hand preference is not a sensitive enough measure of handedness in this context, or that (iii) increased rates of atypical hand preference are not associated with MLD. The latter scenario would suggest that handedness is specifically linked to language-related conditions rather than conditions related to cognitive abilities at large. Future studies need to consider hand skill and degree of hand preference in MLD. © 2021 Informa UK Limited, trading as Taylor & Francis Group.
- Published
- 2021
15. Human handedness: A meta-analysis
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Papadatou-Pastou, M. Ntolka, E. Schmitz, J. Martin, M. Munafò, M.R. Ocklenburg, S. Paracchini, S.
- Abstract
Across time and place, right hand preference has been the norm, but what is the precise prevalence of leftand right-handedness? Frequency of left-handedness has shaped and underpinned different fields of research, from cognitive neuroscience to human evolution, but reliable distributional estimates are still lacking. While hundreds of empirical studies have assessed handedness, a large-scale, comprehensive review of the prevalence of handedness and the factors that moderate it, is currently missing. Here, we report 5 meta-analyses on hand preference for different manual tasks and show that left-handedness prevalence lies between 9.3% (using the most stringent criterion of left-handedness) to 18.1% (using the most lenient criterion of nonright-handedness), with the best overall estimate being 10.6% (10.4% when excluding studies assessing elite athletes' handedness). Handedness variability depends on (a) study characteristics, namely year of publication and ways to measure and classify handedness, and (b) participant characteristics, namely sex and ancestry. Our analysis identifies the role of moderators that require taking into account in future studies on handedness and hemispheric asymmetries. We argue that the same evolutionary mechanisms should apply across geographical regions to maintain the roughly 1:10 ratio, while cultural factors, such as pressure against left-hand use, moderate the magnitude of the prevalence of left-handedness. Although handedness appears as a straightforward trait, there is no universal agreement on how to assess it. Therefore, we urge researchers to fully report study and participant characteristics as well as the detailed procedure by which handedness was assessed and make raw data publicly available. © 2020 American Psychological Association.
- Published
- 2020
16. Four meta-analyses across 164 studies on atypical footedness prevalence and its relation to handedness
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Packheiser, J. Schmitz, J. Berretz, G. Carey, D.P. Paracchini, S. Papadatou-Pastou, M. Ocklenburg, S.
- Abstract
Human lateral preferences, such as handedness and footedness, have interested researchers for decades due to their pronounced asymmetries at the population level. While there are good estimates on the prevalence of handedness in the population, there is no large-scale estimation on the prevalence of footedness. Furthermore, the relationship between footedness and handedness still remains elusive. Here, we conducted meta-analyses with four different classification systems for footedness on 145,135 individuals across 164 studies including new data from the ALSPAC cohort. The study aimed to determine a reliable point estimate of footedness, to study the association between footedness and handedness, and to investigate moderating factors influencing footedness. We showed that the prevalence of atypical footedness ranges between 12.10% using the most conservative criterion of left-footedness to 23.7% including all left- and mixed-footers as a single non-right category. As many as 60.1% of left-handers were left-footed whereas only 3.2% of right-handers were left-footed. Males were 4.1% more often non-right-footed compared to females. Individuals with psychiatric and neurodevelopmental disorders exhibited a higher prevalence of non-right-footedness. Furthermore, the presence of mixed-footedness was higher in children compared to adults and left-footedness was increased in athletes compared to the general population. Finally, we showed that footedness is only marginally influenced by cultural and social factors, which play a crucial role in the determination of handedness. Overall, this study provides new and useful reference data for laterality research. Furthermore, the data suggest that footedness is a valuable phenotype for the study of lateral motor biases, its underlying genetics and neurodevelopment. © 2020, The Author(s).
- Published
- 2020
17. Pannes des instruments en chirurgie endoscopique : causes et conséquences
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Paracchini, S., primary, Bustos, B., additional, Aviles, R., additional, Bourdel, N., additional, Canis, M., additional, Rabishong, B., additional, Slim, K., additional, and Botchorishvili, R., additional
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- 2020
- Full Text
- View/download PDF
18. The neuronal migration hypothesis of dyslexia: A critical evaluation 30 years on
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Guidi, LG, Velayos-Baeza, A, Martinez-Garay, I, Monaco, AP, Paracchini, S, Bishop, D, and Molnar, Z
- Subjects
mental disorders ,behavioral disciplines and activities - Abstract
The capacity for language is one of the key features underlying the complexity of human cognition and its evolution. However, little is known about the neurobiological mechanisms that mediate normal or impaired linguistic ability. For developmental dyslexia, early postmortem studies conducted in the 1980s linked the disorder to subtle defects in the migration of neurons in the developing neocortex. These early studies were reinforced by human genetic analyses that identified dyslexia susceptibility genes and subsequent evidence of their involvement in neuronal migration. In this review, we examine recent experimental evidence that does not support the link between dyslexia and neuronal migration. We critically evaluate gene function studies conducted in rodent models and draw attention to the lack of robust evidence from histopathological and imaging studies in humans. Our review suggests that the neuronal migration hypothesis of dyslexia should be reconsidered, and the neurobiological basis of dyslexia should be approached with a fresh start.
- Published
- 2018
19. Identification of genetic interactions involved in dyslexia pathogenesis
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Karbalai, N., Czamara, D., Moll, K., Ramus, F., Malik, R., Scerri, T.S., Schumacher, J., Morris, A.P., Bourgeron, T., Monaco, A.P., Paracchini, S., Fisher, S.E., Nothen, M., Schulte-Korne, G., and Muller-Myhsok, B.
- Subjects
Neuroinformatics - Abstract
Contains fulltext : 198682.pdf (Publisher’s version ) (Closed access)
- Published
- 2017
20. The DCDC2 deletion is not a risk factor for dyslexia
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Scerri, T S, Macpherson, E, Martinelli, A, Wa, W C, Monaco, A P, Stein, J, Zheng, M, Suk-Han Ho, C, McBride, C, Snowling, M, Hulme, C, Hayiou-Thomas, M E, Waye, M M Y, Talcott, Joel B, Paracchini, S, Scerri, T S, Macpherson, E, Martinelli, A, Wa, W C, Monaco, A P, Stein, J, Zheng, M, Suk-Han Ho, C, McBride, C, Snowling, M, Hulme, C, Hayiou-Thomas, M E, Waye, M M Y, Talcott, Joel B, and Paracchini, S
- Abstract
Dyslexia is a specific impairment in learning to read and has strong heritability. An intronic deletion within the DCDC2 gene, with ~8% frequency in European populations, is increasingly used as a marker for dyslexia in neuroimaging and behavioral studies. At a mechanistic level, this deletion has been proposed to influence sensory processing capacity, and in particular sensitivity to visual coherent motion. Our re-assessment of the literature, however, did not reveal strong support for a role of this specific deletion in dyslexia. We also analyzed data from five distinct cohorts, enriched for individuals with dyslexia, and did not identify any signal indicative of associations for the DCDC2 deletion with reading-related measures, including in a combined sample analysis (N=526). We believe we conducted the first replication analysis for a proposed deletion effect on visual motion perception and found no association (N=445 siblings). We also report that the DCDC2 deletion has a frequency of 37.6% in a cohort representative of the general population recruited in Hong Kong (N=220). This figure, together with a lack of association between the deletion and reading abilities in this cohort, indicates the low likelihood of a direct deletion effect on reading skills. Therefore, on the basis of multiple strands of evidence, we conclude that the DCDC2 deletion is not a strong risk factor for dyslexia. Our analyses and literature re-evaluation are important for interpreting current developments within multidisciplinary studies of dyslexia and, more generally, contribute to current discussions about the importance of reproducibility in science.
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- 2017
21. Increased prevalence of sex chromosome aneuploidies in specific language impairment and dyslexia
- Author
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Simpson, N, Addis, L, Brandler, WM, Slonims, V, Clark, A, Watson, J, Scerri, T, Hennessy, E, Bolton, P, Conti-Ramsden, G, Fairfax, B, Knight, J, Stein, J, Talcott, J, O'Hare, A, Baird, G, Paracchini, S, Fisher, SE, Newbury, D, Nudel, R, Monaco, A, Simonoff, E, Pickles, A, Everitt, A, and Seckl, J
- Abstract
Aim: Sex chromosome aneuploidies increase the risk of spoken or written language disorders but individuals with specific language impairment (SLI) or dyslexia do not routinely undergo cytogenetic analysis. We assess the frequency of sex chromosome aneuploidies in individuals with language impairment or dyslexia. Method: Genome-wide single nucleotide polymorphism genotyping was performed in three sample sets: a clinical cohort of individuals with speech and language deficits (87 probands: 61 males, 26 females; age range 4 to 23 years), a replication cohort of individuals with SLI, from both clinical and epidemiological samples (209 probands: 139 males, 70 females; age range 4 to 17 years), and a set of individuals with dyslexia (314 probands: 224 males, 90 females; age range 7 to 18 years). Results: In the clinical language-impaired cohort, three abnormal karyotypic results were identified in probands (proband yield 3.4%). In the SLI replication cohort, six abnormalities were identified providing a consistent proband yield (2.9%). In the sample of individuals with dyslexia, two sex chromosome aneuploidies were found giving a lower proband yield of 0.6%. In total, two XYY, four XXY (Klinefelter syndrome), three XXX, one XO (Turner syndrome), and one unresolved karyotype were identified. Interpretation: The frequency of sex chromosome aneuploidies within each of the three cohorts was increased over the expected population frequency (approximately 0.25%) suggesting that genetic testing may prove worthwhile for individuals with language and literacy problems and normal non-verbal IQ. Early detection of these aneuploidies can provide information and direct the appropriate management for individuals. © 2013 The Authors. Developmental Medicine and Child Neurology published by John Wiley and Sons Ltd on behalf of Mac Keith Press.
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- 2016
22. A Y-chromosomal perspective on the peopling of North Africa
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Arredi, B, Poloni, ES, Paracchini, S, Zerjal, T, Fathallah, DM, Makrelouf, M, Novelletto, A, and Tyler-Smith, C
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- 2016
23. Detection of protocadherinX/Y SNPs in patients with schizophrenia and other family members
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Giouzeli, M, Williams, NA, Paracchini, S, Tyler-Smith, C, DeLisi, LE, and Crow, TJ
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- 2016
24. Association mapping of the 6p23-21.3 QTL for reading disability
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Francks, C, Paracchini, S, Smith, SD, Richardson, AJ, Scerri, TS, Cardon, LR, Marlow, AJ, MacPhie, IL, Walter, J, Pennington, BF, Fisher, SE, Olson, RK, DeFries, JC, Stein, JF, and Monaco, AP
- Published
- 2016
25. Genome-wide association analyses of child genotype effects and parent-of-origin effects in specific language impairment
- Author
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Nudel, R., Simpson, N., Baird, G., O’Hare, A., Conti-Ramsden, G., Bolton, P., Hennessy, E., The SLli consortium, Ring, S., Smith, G., Francks, C., Paracchini, S., Monaco, A., Fisher, S., Newbury, D., The Royal Society, University of St Andrews. School of Medicine, and University of St Andrews. Biomedical Sciences Research Complex
- Subjects
Adult ,Male ,Genotype ,Apraxias ,Quantitative Trait Loci ,QH426 Genetics ,Polymorphism, Single Nucleotide ,Genomic Imprinting ,Neurodevelopmental disorder ,RZ ,Chromosomes, Human ,Guanine Nucleotide Exchange Factors ,Humans ,GWAS ,Child ,QH426 ,Adaptor Proteins, Signal Transducing ,Tumor Suppressor Proteins ,RNA-Binding Proteins ,Imprinting ,Original Articles ,ALSPAC ,neurodevelopmental disorder ,specific language impairment ,Specific language impairment ,RC0321 ,Female ,imprinting ,Apoptosis Regulatory Proteins ,Receptors, Prostaglandin E, EP4 Subtype ,RC0321 Neuroscience. Biological psychiatry. Neuropsychiatry ,Genome-Wide Association Study - Abstract
Dianne Newbury is an MRC Career Development Fellow and a Junior Research Fellow at St John’s College, University of Oxford. The work of the Newbury lab is funded by the Medical Research Council [G1000569/1 and MR/J003719/1]. Ron Nudel is funded by a University of Oxford Nuffield Department of Medicine Prize Studentship. The genotyping of samples was funded by the Max Planck Society. Silvia Paracchini is a Royal Society University Research Fellow. The analyses of the ALSPAC cohort were supported by a grant from the Medical Research Council [G0800523/86473]. The collection of the SLIC samples was supported by the Wellcome Trust (060774 and 076566). Patrick Bolton is supported by a National Institute of Health Research (UK) Senior Investigator award and the Biomedical Research Centre in Mental Health at the South London & Maudsley NHS Trust Hospital, London. The work of the Wellcome Trust Centre in Oxford is supported by the Wellcome Trust [090532/Z/09/Z]. Specific language impairment (SLI) is a neurodevelopmental disorder that affects linguistic abilities when development is otherwise normal. We report the results of a genome-wide association study of SLI which included parent-of-origin effects and child genotype effects and used 278 families of language-impaired children. The child genotype effects analysis did not identify significant associations. We found genome-wide significant paternal parent-of-origin effects on chromosome 14q12 (P = 3.74 × 10-8 ) and suggestive maternal parent-of-origin-effects on chromosome 5p13 (P = 1.16 × 10-7 ). A subsequent targeted association of six single-nucleotide-polymorphisms (SNPs) on chromosome 5 in 313 language-impaired individuals from the ALSPAC cohort replicated the maternal effects, albeit in the opposite direction (P = 0.001); as fathers' genotypes were not available in the ALSPAC study, the replication analysis did not include paternal parent-of-origin effects. The paternally-associated SNP on chromosome 14 yields a non-synonymous coding change within the NOP9 gene. This gene encodes an RNA-binding protein that has been reported to be significantly dysregulated in individuals with schizophrenia. The region of maternal association on chromosome 5 falls between the PTGER4 and DAB2 genes, in a region previously implicated in autism and ADHD. The top SNP in this association locus is a potential expression QTL of ARHGEF19 (also called WGEF) on chromosome 1. Members of this protein family have been implicated in intellectual disability. In sum, this study implicates parent-of-origin effects in language impairment, and adds an interesting new dimension to the emerging picture of shared genetic etiology across various neurodevelopmental disorders. Publisher PDF
- Published
- 2016
26. Increased prevalence of sex chromosome aneuploidies in specific language impairment and dyslexia
- Author
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Simpson, NH, Addis, L, Brandler, WM, Slonims, V, Clark, A, Watson, J, Scerri, TS, Hennessy, ER, Bolton, PF, Conti-Ramsden, G, Fairfax, BP, Knight, JC, Stein, J, Talcott, JB, O'Hare, A, Baird, G, Paracchini, S, Fisher, SE, and Newbury, DF
- Abstract
AIM: Sex chromosome aneuploidies increase the risk of spoken or written language disorders but individuals with specific language impairment (SLI) or dyslexia do not routinely undergo cytogenetic analysis. We assess the frequency of sex chromosome aneuploidies in individuals with language impairment or dyslexia. METHOD: Genome-wide single nucleotide polymorphism genotyping was performed in three sample sets: a clinical cohort of individuals with speech and language deficits (87 probands: 61 males, 26 females; age range 4 to 23 years), a replication cohort of individuals with SLI, from both clinical and epidemiological samples (209 probands: 139 males, 70 females; age range 4 to 17 years), and a set of individuals with dyslexia (314 probands: 224 males, 90 females; age range 7 to 18 years). RESULTS: In the clinical language-impaired cohort, three abnormal karyotypic results were identified in probands (proband yield 3.4%). In the SLI replication cohort, six abnormalities were identified providing a consistent proband yield (2.9%). In the sample of individuals with dyslexia, two sex chromosome aneuploidies were found giving a lower proband yield of 0.6%. In total, two XYY, four XXY (Klinefelter syndrome), three XXX, one XO (Turner syndrome), and one unresolved karyotype were identified. INTERPRETATION: The frequency of sex chromosome aneuploidies within each of the three cohorts was increased over the expected population frequency (approximately 0.25%) suggesting that genetic testing may prove worthwhile for individuals with language and literacy problems and normal non-verbal IQ. Early detection of these aneuploidies can provide information and direct the appropriate management for individuals.
- Published
- 2016
27. Are sequence family variants useful for identifying deletions in the human Y chromosome? Reply
- Author
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Fernandes, S, Paracchini, S, Meyer, LH, Floridia, G, Tyler-Smith, C, and Vogt, PH
- Published
- 2016
28. Further evidence for a parent-of-origin effect at the NOP9 locus on language-related phenotypes
- Author
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Pettigrew, K, Frinton, E, Nudel, R, Chan, M, Thompson, P, Hayiou-Thomas, M, Talcott, J, Stein, J, Newbury, D, and Paracchini, S
- Abstract
Background: Specific Language Impairment (SLI) is a common neurodevelopmental disorder, observed in 5-10% of children. Family and twin studies suggest a strong genetic component, but relatively few candidate genes have been reported to date. A recent genome-wide association study (GWAS) described the first statistically significant association specifically for a SLI cohort between a missense variant (rs4280164) in the NOP9 gene and language-related phenotypes under a parent-of-origin model. Replications of these findings are particularly challenging because the availability of parental DNA is required. Methods: We used two independent family-based cohorts characterised with reading- and language-related traits: a longitudinal cohort (n = 106 informative families) including children with language and reading difficulties and a nuclear family cohort (n = 264 families) selected for dyslexia. Results: We observed association with language-related measures when modelling for parent-of-origin effects at the NOP9 locus in both cohorts: minimum P = 0.001 for phonological awareness with a paternal effect in the first cohort and minimum P = 0.0004 for irregular word reading with a maternal effect in the second cohort. Allelic and parental trends were not consistent when compared to the original study. Conclusions: A parent-of-origin effect at this locus was detected in both cohorts, albeit with different trends. These findings contribute in interpreting the original GWAS report and support further investigations of the NOP9 locus and its role in language-related traits. A systematic evaluation of parent-of-origin effects in genetic association studies has the potential to reveal novel mechanisms underlying complex traits.
- Published
- 2016
29. The DCDC2 deletion is not a risk factor for dyslexia
- Author
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Scerri, T S, primary, Macpherson, E, additional, Martinelli, A, additional, Wa, W C, additional, Monaco, A P, additional, Stein, J, additional, Zheng, M, additional, Suk-Han Ho, C, additional, McBride, C, additional, Snowling, M, additional, Hulme, C, additional, Hayiou-Thomas, M E, additional, Waye, M M Y, additional, Talcott, J B, additional, and Paracchini, S, additional
- Published
- 2017
- Full Text
- View/download PDF
30. Copy number variation screen identifies a rare de Novo deletion at chromosome 15q13.1-13.3 in a child with language impairment
- Author
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Pettigrew, K. A., Reeves, E., Leavett, R., Hayious-Thomas, Emma, Sharma, A., Simpson, N. H., Martinelli, A., Thompson, Paul A., Hulme, Charles, Snowling, Margaret J., Newbury, D. F., and Paracchini, S.
- Abstract
A significant proportion of children (up to 7% in the UK) present with pronounced language difficulties that cannot be explained by obvious causes like other neurological and medical conditions. A substantial genetic component is predicted to underlie such language problems. Copy number variants (CNVs) have been implicated in neurodevelopmental and psychiatric conditions, such as autism and schizophrenia, but it is not fully established to what extent they might contribute to language disorders. We conducted a CNV screen in a longitudinal cohort of young children with language-related difficulties (n = 85), focusing on single events at candidate loci. We detected a de novo deletion on chromosome 15q13.1-13.3. The adjacent 15q11-13.1 locus is disrupted in Prader-Willi and Angelman syndromes, while disruptions across the breakpoints (BP1-BP6) have previously been implicated in different neurodevelopmental phenotypes including autism, intellectual disability (ID), seizures and developmental delay (DD). This is the first report of a deletion at BP3-BP5 being linked to a deficit confined to language impairment, in the absence of ID, expanding the range of phenotypes that implicate the chromosome 15q13 locus.
- Published
- 2015
31. Lack of replication for the myosin-18B association with mathematical ability in independent cohorts
- Author
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Pettigrew, K., Fajutrao Valles, S., Moll, K., Northstone, K., Ring, S., Pennell, C., Wang, C., Leavett, R., Hayiou-Thomas, M., Thompson, P., Simpson, N., Fisher, S., Whitehouse, A., Snowling, M., Newbury, D., Paracchini, S., and The SLI Consortium
- Abstract
Twin studies indicate that dyscalculia (or mathematical disability) is caused partly by a genetic component, which is yet to be understood at the molecular level. Recently, a coding variant (rs133885) in the myosin-18B gene was shown to be associated with mathematical abilities with a specific effect among children with dyslexia. This association represents one of the most significant genetic associations reported to date for mathematical abilities and the only one reaching genome-wide statistical significance. We conducted a replication study in different cohorts to assess the effect of rs133885 maths-related measures. The study was conducted primarily using the Avon Longitudinal Study of Parents and Children (ALSPAC), (N = 3819). We tested additional cohorts including the York Cohort, the Specific Language Impairment Consortium (SLIC) cohort and the Raine Cohort, and stratified them for a definition of dyslexia whenever possible. We did not observe any associations between rs133885 in myosin-18B and mathematical abilities among individuals with dyslexia or in the general population. Our results suggest that the myosin-18B variant is unlikely to be a main factor contributing to mathematical abilities.
- Published
- 2015
32. The handedness-associated PCSK6 locus spans an intronic promoter regulating novel transcripts
- Author
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Shore, R, Covill, L, Pettigrew, K, Brandler, W, Diaz, R, Xu, Y, Tello, J, Talcott, J, Newbury, D, Stein, J, Monaco, A, Paracchini, S, Shore, R, Covill, L, Pettigrew, K, Brandler, W, Diaz, R, Xu, Y, Tello, J, Talcott, J, Newbury, D, Stein, J, Monaco, A, and Paracchini, S
- Abstract
We recently reported the association of the PCSK6 gene with handedness through a quantitative genome-wide association study (GWAS; P < 0.5 × 10−8) for a relative hand skill measure in individuals with dyslexia. PCSK6 activates Nodal, a morphogen involved in regulating left–right body axis determination. Therefore, the GWAS data suggest that the biology underlying the patterning of structural asymmetries may also contribute to behavioural laterality, e.g. handedness. The association is further supported by an independent study reporting a variable number tandem repeat (VNTR) within the same PCSK6 locus to be associated with degree of handedness in a general population cohort. Here, we have conducted a functional analysis of the PCSK6 locus combining further genetic analysis, in silico predictions and molecular assays. We have shown that the previous GWAS signal was not tagging a VNTR effect, suggesting that the two markers have independent effects. We demonstrated experimentally that one of the top GWAS-associated markers, rs11855145, directly alters the binding site for a nuclear factor. Furthermore, we have shown that the predicted regulatory region adjacent to rs11855415 acts as a bidirectional promoter controlling the expression of novel RNA transcripts. These include both an antisense long non-coding RNA (lncRNA) and a short PCSK6 isoform predicted to be coding. This is the first molecular characterization of a handedness-associated locus that supports the role of common variants in non-coding sequences in influencing complex phenotypes through gene expression regulation.
- Published
- 2016
33. Lack of replication for the myosin-18b association with mathematical ability in independent cohorts
- Author
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Pettigrew, K.A., Valles, S.F.F., Moll, K., Northstone, K., Ring, S., Pennell, C., Wang, C., Leavett, R., Hayiou-Thomas, M.E., Thompson, P., Simpson, N.H., Fisher, S.E., Whitehouse, A.J.O., Snowling, M.J., Newbury, D.F., Paracchini, S., Consortium, S.L.I., Pettigrew, K.A., Valles, S.F.F., Moll, K., Northstone, K., Ring, S., Pennell, C., Wang, C., Leavett, R., Hayiou-Thomas, M.E., Thompson, P., Simpson, N.H., Fisher, S.E., Whitehouse, A.J.O., Snowling, M.J., Newbury, D.F., Paracchini, S., and Consortium, S.L.I.
- Abstract
Contains fulltext : 144502.pdf (Publisher’s version ) (Open Access)
- Published
- 2015
34. Comparison of two 'a priori' risk assessment algorithms for preeclampsia in Italy: a prospective multicenter study
- Author
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Nicola Rizzo, Chiara Germano, Federico Prefumo, Tullia Todros, Paolo Cavoretto, Massimo Candiani, Veronica Giorgione, F. Fuse, Antonio Farina, Danila Morano, Benedetta Bracco, L. Cariello, Giulia Parpinel, Sara Paracchini, Flavia Girlando, Daniela Di Martino, Bianca Masturzo, Di Martino, D., Masturzo, B., Paracchini, S., Bracco, B., Cavoretto, P., Prefumo, F., Germano, C., Morano, D., Girlando, F., Giorgione, V., Parpinel, G., Cariello, L., Fuse, F., Candiani, M., Todros, T., Rizzo, N., Farina, A., Di Martino D., Masturzo B., Paracchini S., Bracco B., Cavoretto P., Prefumo F., Germano C., Morano D., Girlando F., Giorgione V., Parpinel G., Cariello L., Fuse F., Candiani M., Todros T., Rizzo N., and Farina A.
- Subjects
Adult ,ROC curves ,Risk Assessment ,Preeclampsia ,03 medical and health sciences ,0302 clinical medicine ,Pre-Eclampsia ,Pregnancy ,Risk Factors ,A priori risk ,Detection rate ,Screening for preeclampsia ,Algorithms ,Biomarkers ,Female ,Humans ,Italy ,Prospective Studies ,medicine ,Prospective cohort study ,030219 obstetrics & reproductive medicine ,Receiver operating characteristic ,business.industry ,Obstetrics and Gynecology ,General Medicine ,medicine.disease ,ROC curve ,030220 oncology & carcinogenesis ,Gestation ,Population study ,False positive rate ,business ,Risk assessment ,Algorithm - Abstract
Purpose: To compare the performance of the algorithms proposed by the Fetal Medicine Foundation in 2012 and BCNatal in 2013 in an Italian population. Methods: A multicentric prospective study was carried out which included pregnancies at 11–13weeks’ gestation from Jan 2014 through May 2017. Two previously published algorithms were used for the calculation of the “a priori” risk of preeclampsia (based on risk factors from medical history) in each individual. Results: In a study population of 11,632 cases, 67 (0.6%) developed early preeclampsia and 211 (1.8%) developed late preeclampsia. The detection rates (95% CI) for early and late preeclampsia were 58.2% (45.5–70.2) vs. 41.8% (29.6–54.5) (p value < 0.05) and 44.1% (37.3–51.1) vs. 38% (31.3–44.8) (p value < 0.05) for the Fetal Medicine Foundation and BCNatal, respectively (at a 10% false positive rate). The associated risk was 1:226 and 1:198 (p value ns) for early PE, and 1:17 and 1:24 (p value ns) for late PE for the Fetal Medicine Foundation and BCNatal, respectively. Conclusions: The Fetal Medicine Foundation screening for preeclampsia at 11–13weeks’ gestation scored the highest detection rate for both early and late PE. At a fixed 10% false positive rate, the estimated “a priori” risks of both the Fetal Medicine Foundation and the BCNatal algorithms in an Italian population were quite similar, and both were reliable and consistent.
- Published
- 2019
35. Low-Pressure Laparoscopy Using the AirSeal System versus Standard Insufflation in Early-Stage Endometrial Cancer: A Multicenter, Retrospective Study (ARIEL Study)
- Author
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Alessandro Buda, Giampaolo Di Martino, Martina Borghese, Stefano Restaino, Alessandra Surace, Andrea Puppo, Sara Paracchini, Debora Ferrari, Stefania Perotto, Antonia Novelli, Elena De Ponti, Chiara Borghi, Francesco Fanfani, Robert Fruscio, Buda, A, Di Martino, G, Borghese, M, Restaino, S, Surace, A, Puppo, A, Paracchini, S, Ferrari, D, Perotto, S, Novelli, A, De Ponti, E, Borghi, C, Fanfani, F, and Fruscio, R
- Subjects
Settore MED/40 - GINECOLOGIA E OSTETRICIA ,laparoscopy ,endometrial cancer ,low-pressure insufflation ,postoperative pain ,Health Information Management ,Leadership and Management ,Health Policy ,Health Informatics - Abstract
The aim of our study was to evaluate the benefits of a low-pressure insufflation system (AirSeal) vs. a standard insufflation system in terms of anesthesiologists’ parameters and postoperative pain in patients undergoing laparoscopic surgery for early-stage endometrial cancer. This retrospective study involved five tertiary centers and included 152 patients with apparent early-stage disease who underwent laparoscopic surgical staging with either the low-pressure AirSeal system (8–10 mmHg, n = 84) or standard laparoscopic insufflation (10–12 mmHg, n = 68). All the intraoperative anesthesia variables evaluated (systolic blood pressure, end-tidal CO2, peak airway pressure) were significantly lower in the AirSeal group. We recorded a statistically significant difference between the two groups in the median NRS scores for global pain recorded at 4, 8, and 24 h, and for overall shoulder pain after surgery. Significantly more women in the AirSeal group were also discharged on day one compared to the standard group. All such results were confirmed when analyzing the subgroup of women with a BMI >30 kg/m2. In conclusion, according to our preliminary study, low-pressure laparoscopy represents a valid alternative to standard laparoscopy and could facilitate the development of outpatient surgery.
- Published
- 2022
36. A novel mutation in SPART gene causes a severe neurodevelopmental delay due to mitochondrial dysfunction with complex I impairments and altered pyruvate metabolism
- Author
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Antonia Tranchina, Christian Bergamini, Irene Liparulo, Francesca Bianco, Vito Antonio Baldassarro, Francesco Buscherini, Chiara Diquigiovanni, Luca Masin, Nicola Rizzardi, Romana Fato, Marco Seri, Elena Bonora, Rebeca Diaz, Emanuela Scarano, Duccio Maria Cordelli, Tommaso Pippucci, Silvia Paracchini, Anita Wischmeijer, Diquigiovanni C., Bergamini C., Diaz R., Liparulo I., Bianco F., Masin L., Baldassarro V.A., Rizzardi N., Tranchina A., Buscherini F., Wischmeijer A., Pippucci T., Scarano E., Cordelli D.M., Fato R., Seri M., Paracchini S., Bonora E., University of St Andrews. School of Medicine, University of St Andrews. Centre for Biophotonics, University of St Andrews. Cellular Medicine Division, and University of St Andrews. Biomedical Sciences Research Complex
- Subjects
Male ,0301 basic medicine ,Mitochondrial Diseases ,QH301 Biology ,Cell Cycle Proteins ,Mitochondrion ,medicine.disease_cause ,Biochemistry ,0302 clinical medicine ,Spastic ,Child ,R2C ,Genetics ,Spartin ,Mutation ,~DC~ ,musculoskeletal system ,Mitochondria ,mitochondria ,medicine.symptom ,BDC ,RC0321 Neuroscience. Biological psychiatry. Neuropsychiatry ,Biotechnology ,Spg20 ,Calcium ,Cell Line ,Electron Transport Complex I ,Endosomes ,Humans ,NAD ,NADH Dehydrogenase ,Neurodevelopmental Disorders ,Pyruvates ,NDAS ,QH426 Genetics ,Troyer syndrome ,Short stature ,QH301 ,03 medical and health sciences ,medicine ,QH426 ,Molecular Biology ,Gene ,business.industry ,Muscle weakness ,nervous system diseases ,030104 developmental biology ,RC0321 ,business ,030217 neurology & neurosurgery ,Oxidative stress - Abstract
Loss-of-function mutations in the SPART gene cause Troyer syndrome, a recessive form of spastic paraplegia resulting in muscle weakness, short stature, and cognitive defects. SPART encodes for Spartin, a protein linked to endosomal trafficking and mitochondrial membrane potential maintenance. Here, we identified with whole exome sequencing (WES) a novel frameshift mutation in the SPART gene in 2 brothers presenting an uncharacterized developmental delay and short stature. Functional characterization in an SH-SY5Y cell model shows that this mutation is associated with increased neurite outgrowth. These cells also show a marked decrease in mitochondrial complex I (NADH dehydrogenase) activity, coupled to decreased ATP synthesis and defective mitochondrial membrane potential. The cells also presented an increase in reactive oxygen species, extracellular pyruvate, and NADH levels, consistent with impaired complex I activity. In concordance with a severe mitochondrial failure, Spartin loss also led to an altered intracellular Ca2+ homeostasis that was restored after transient expression of wild-type Spartin. Our data provide for the first time a thorough assessment of Spartin loss effects, including impaired complex I activity coupled to increased extracellular pyruvate. In summary, through a WES study we assign a diagnosis of Troyer syndrome to otherwise undiagnosed patients, and by functional characterization we show that the novel mutation in SPART leads to a profound bioenergetic imbalance.-Diquigiovanni, C., Bergamini, C., Diaz, R., Liparulo, I., Bianco, F., Masin, L., Baldassarro, V. A., Rizzardi, N., Tranchina, A., Buscherini, F., Wischmeijer, A., Pippucci, T., Scarano, E., Cordelli, D. M., Fato, R., Seri, M., Paracchini, S., Bonora, E. A novel mutation in SPART gene causes a severe neurodevelopmental delay due to mitochondrial dysfunction with complex I impairments and altered pyruvate metabolism.
- Published
- 2019
37. A GWAS for grip strength in cohorts of children-Advantages of analysing young participants for this trait.
- Author
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Abbondanza F, Wang CA, Schmitz J, Marianski K, Pennell CE, Whitehouse AJO, and Paracchini S
- Subjects
- Humans, Male, Female, Child, Adolescent, Polymorphism, Single Nucleotide, Quantitative Trait Loci, Cohort Studies, Hand Strength, Genome-Wide Association Study methods
- Abstract
Grip strength (GS) is a proxy measure for muscular strength and a predictor for bone fracture risk among other diseases. Previous genome-wide association studies (GWASs) have been conducted in large cohorts of adults focusing on scores collected for the dominant hand, therefore increasing the likelihood of confounding effects by environmental factors. Here, we perform the first GWAS meta-analyses on maximal GS with the dominant (GSD) and non-dominant (GSND) hand in two cohorts of children (ALSPAC, N = 5450; age range = 10.65-13.61; Raine Study, N = 1162, age range: 9.42-12.38 years). We identified a novel significant association for GSND (rs9546244, LINC02465, p = 3.43e-08) and replicated associations previously reported in adults including with a HOXB3 gene marker that shows an expression quantitative trait locus (eQTL) effect. Despite a much smaller sample (~3%) compared with the UK Biobank we replicated correlation analyses previously reported in this much larger adult cohort, such as a negative correlation with coronary artery disease. Although the results from the polygenic risk score (PRS) analyses did not survive multiple testing correction, we observed nominally significant associations between GS and risk of overall fracture, as previously reported, as well ADHD which will require further investigations. Finally, we observed a higher SNP-heritability (24%-41%) compared with previous studies (4%-24%) in adults. Overall, our results suggest that cohorts of children might be better suited for genetic studies of grip strength, possibly due to the shorter exposure to confounding environmental factors compared with adults., (© 2024 The Author(s). Genes, Brain and Behavior published by International Behavioural and Neural Genetics Society and John Wiley & Sons Ltd.)
- Published
- 2024
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38. Kin selection as a modulator of human handedness: sex-specific, parental and parent-of-origin effects.
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Dong B, Paracchini S, and Gardner A
- Abstract
The frequency of left-handedness in humans is ~10% worldwide and slightly higher in males than females. Twin and family studies estimate the heritability of human handedness at around 25%. The low but substantial frequency of left-handedness has been suggested to imply negative frequency-dependent selection, e.g. owing to a 'surprise' advantage of left-handers in combat against opponents more used to fighting right-handers. Because such game-theoretic hypotheses involve social interaction, here we perform an analysis of the evolution of handedness based on kin-selection, which is understood to play a major role in the evolution of social behaviour generally. We show that: (1) relatedness modulates the balance of right-handedness vs. left-handedness, according to whether left-handedness is marginally selfish vs. marginally altruistic; (2) sex differences in relatedness to social partners may drive sex differences in handedness; (3) differential relatedness of parents and offspring may generate parent-offspring conflict and sexual conflict leading to the evolution of maternal and paternal genetic effects in relation to handedness; and (4) differential relatedness of maternal-origin vs. paternal-origin genes may generate intragenomic conflict leading to the evolution of parent-of-origin-specific gene effects - such as 'genomic imprinting' - and associated maladaptation., Competing Interests: None., (© The Author(s) 2024.)
- Published
- 2024
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39. A genome-wide association study of Chinese and English language phenotypes in Hong Kong Chinese children.
- Author
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Lin YP, Shi Y, Zhang R, Xue X, Rao S, Yin L, Lui KFH, Pan DJ, Maurer U, Choy KW, Paracchini S, McBride C, and So HC
- Abstract
Dyslexia and developmental language disorders are important learning difficulties. However, their genetic basis remains poorly understood, and most genetic studies were performed on Europeans. There is a lack of genome-wide association studies (GWAS) on literacy phenotypes of Chinese as a native language and English as a second language (ESL) in a Chinese population. In this study, we conducted GWAS on 34 reading/language-related phenotypes in Hong Kong Chinese bilingual children (including both twins and singletons; total N = 1046). We performed association tests at the single-variant, gene, and pathway levels. In addition, we tested genetic overlap of these phenotypes with other neuropsychiatric disorders, as well as cognitive performance (CP) and educational attainment (EA) using polygenic risk score (PRS) analysis. Totally 5 independent loci (LD-clumped at r
2 = 0.01; MAF > 0.05) reached genome-wide significance (p < 5e-08; filtered by imputation quality metric Rsq>0.3 and having at least 2 correlated SNPs (r2 > 0.5) with p < 1e-3). The loci were associated with a range of language/literacy traits such as Chinese vocabulary, character and word reading, and rapid digit naming, as well as English lexical decision. Several SNPs from these loci mapped to genes that were reported to be associated with EA and other neuropsychiatric phenotypes, such as MANEA and PLXNC1. In PRS analysis, EA and CP showed the most consistent and significant polygenic overlap with a variety of language traits, especially English literacy skills. To summarize, this study revealed the genetic basis of Chinese and English abilities in a group of Chinese bilingual children. Further studies are warranted to replicate the findings., (© 2024. The Author(s).)- Published
- 2024
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40. Auditory Cortex Asymmetry Associations with Individual Differences in Language and Cognition.
- Author
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Eckert MA, Vaden KI Jr, and Paracchini S
- Abstract
A longstanding cerebral lateralization hypothesis predicts that disrupted development of typical leftward structural asymmetry of auditory cortex explains why children have problems learning to read. Small sample sizes and small effects, potential sex-specific effects, and associations that are limited to specific dimensions of language are thought to have contributed inconsistent results. The large ABCD study dataset (baseline visit: N = 11,859) was used to test the hypothesis of significant associations between surface area asymmetry of auditory cortex and receptive vocabulary performance across boys and girls, as well as an oral word reading effect that was specific to boys. The results provide modest support (Cohen's d effect sizes ≤ 0.10) for the cerebral lateralization hypothesis.
- Published
- 2023
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41. Elevated levels of mixed-hand preference in dyslexia: Meta-analyses of 68 studies.
- Author
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Packheiser J, Papadatou-Pastou M, Koufaki A, Paracchini S, Stein CC, Schmitz J, and Ocklenburg S
- Subjects
- Humans, Hand, MEDLINE, Odds Ratio, Functional Laterality, Dyslexia
- Abstract
Since almost a hundred years, psychologists have investigated the link between hand preference and dyslexia. We present a meta-analysis to determine whether there is indeed an increase in atypical hand preference in dyslexia. We included studies used in two previous meta-analyses (Bishop, 1990; Eglinton & Annett, 1994) as well as studies identified through PubMed MEDLINE, PsycInfo, Google Scholar, and Web of Science up to August 2022. K = 68 studies (n = 4660 individuals with dyslexia; n = 40845 controls) were entered into three random effects meta-analyses using the odds ratio as the effect size (non-right-handers; left-handers; mixed-handers vs. total). Evidence of elevated levels of atypical hand preference in dyslexia emerged that were especially pronounced for mixed-hand preference (OR = 1.57), although this category was underdefined. Differences in (direction or degree) of hand skill or degree of hand preference could not be assessed as no pertinent studies were located. Our findings allow for robust conclusions only for a relationship of mixed-hand preference with dyslexia., (Copyright © 2023 Elsevier Ltd. All rights reserved.)
- Published
- 2023
- Full Text
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42. Dyslexia-related loci are significantly associated with language and literacy in Chinese-English bilingual Hong Kong Chinese twins.
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Chung CY, Pan DJ, Paracchini S, Jiang W, So HC, McBride C, Maurer U, Zheng M, and Choy KW
- Subjects
- Adult, Humans, East Asian People, Genome-Wide Association Study, Hong Kong, Language, Membrane Proteins, Nerve Tissue Proteins genetics, Literacy, Dyslexia genetics
- Abstract
A recent genome-wide association study on dyslexia in 51,800 affected European adults and 1,087,070 controls detected 42 genome-wide significant single nucleotide variants (SNPs). The association between rs2624839 in SEMA3F and reading fluency was replicated in a Chinese cohort. This study explores the genetic overlap between Chinese and English word reading, vocabulary knowledge and spelling, and aims at replicating the association in a unique cohort of bilingual (Chinese-English) Hong Kong Chinese twins. Our result showed an almost complete genetic overlap in vocabulary knowledge (r
2 = 0.995), and some genetic overlaps in word reading and spelling (r2 = 0.846, 0.687) across the languages. To investigate the region near rs2624839, we tested proxy SNPs (rs1005678, rs12632110 and rs12494414) at the population level (n = 305-308) and the within-twin level (n = 342-344 [171-172 twin pairs]). All the three SNPs showed significant associations with quantitative Chinese and English vocabulary knowledge (p < 0.05). The strongest association after multiple testing correction was between rs12494414 and English vocabulary knowledge at the within-twin level (p = 0.004). There was a trend of associations with word reading and spelling in English but not in Chinese. Our result suggested that the region near rs2624839 is one of the common genetic factors across English and Chinese vocabulary knowledge and unique factors of English word reading and English spelling in bilingual Chinese twins. A larger sample size is required to validate our findings. Further studies on the relationship between variable expression of SEMA3F, which is important to neurodevelopment, and language and literacy are encouraged., (© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)- Published
- 2023
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43. Identification of loci involved in childhood visual acuity and associations with cognitive skills and educational attainment.
- Author
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Schmitz J, Abbondanza F, Marianski K, Luciano M, and Paracchini S
- Abstract
Visual acuity significantly contributes to quality of life. Deficits in childhood are associated with reading difficulties, which can have detrimental effects on education outcomes. In adults, it has been observed that vision defects such as myopia are associated with higher educational attainment (EA). Understanding genetic factors contributing to visual acuity could help to dissect its links with cognitive skills, neurodevelopmental conditions, and education. We examined associations between distance visual acuity, cognitive measures including school grades, and neurodevelopmental conditions in a longitudinal cohort of British children (ALSPAC, n = 6807, M age = 11.8). We performed a genome-wide association study (GWAS, n = 5571) on visual acuity and tested for genetic associations with relevant phenotypes using polygenic scores (PGS) and genetic correlation analyses. Visual acuity was associated with better cognitive performance and school grades, and reduced in individuals with reading difficulties compared to controls. GWAS revealed genetic associations at the NPLOC4 locus and highlighted other genes involved in sensory function. In line with positive genetic correlations between visual acuity and cognitive measures, EA PGS were positively associated with visual acuity, while there was a less robust negative association with myopia PGS. In conclusion, increased visual acuity is associated with a range of positive outcomes, including better school grades. Our results suggest an association between a higher EA PGS and slightly increased visual acuity in childhood. This could indicate gene-environment correlation, in which environmental exposures linked to higher EA might have detrimental effects on vision offsetting the initial positive effect., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
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44. Language and reading impairments are associated with increased prevalence of non-right-handedness.
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Abbondanza F, Dale PS, Wang CA, Hayiou-Thomas ME, Toseeb U, Koomar TS, Wigg KG, Feng Y, Price KM, Kerr EN, Guger SL, Lovett MW, Strug LJ, van Bergen E, Dolan CV, Tomblin JB, Moll K, Schulte-Körne G, Neuhoff N, Warnke A, Fisher SE, Barr CL, Michaelson JJ, Boomsma DI, Snowling MJ, Hulme C, Whitehouse AJO, Pennell CE, Newbury DF, Stein J, Talcott JB, Bishop DVM, and Paracchini S
- Subjects
- Humans, Child, Adolescent, Young Adult, Adult, Prevalence, Language, Brain, Functional Laterality, Reading
- Abstract
Handedness has been studied for association with language-related disorders because of its link with language hemispheric dominance. No clear pattern has emerged, possibly because of small samples, publication bias, and heterogeneous criteria across studies. Non-right-handedness (NRH) frequency was assessed in N = 2503 cases with reading and/or language impairment and N = 4316 sex-matched controls identified from 10 distinct cohorts (age range 6-19 years old; European ethnicity) using a priori set criteria. A meta-analysis (N
cases = 1994) showed elevated NRH % in individuals with language/reading impairment compared with controls (OR = 1.21, CI = 1.06-1.39, p = .01). The association between reading/language impairments and NRH could result from shared pathways underlying brain lateralization, handedness, and cognitive functions., (© 2023 The Authors. Child Development published by Wiley Periodicals LLC on behalf of Society for Research in Child Development.)- Published
- 2023
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45. Author Correction: Discovery of 42 genome-wide significant loci associated with dyslexia.
- Author
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Doust C, Fontanillas P, Eising E, Gordon SD, Wang Z, Alagöz G, Molz B, Pourcain BS, Francks C, Marioni RE, Zhao J, Paracchini S, Talcott JB, Monaco AP, Stein JF, Gruen JR, Olson RK, Willcutt EG, DeFries JC, Pennington BF, Smith SD, Wright MJ, Martin NG, Auton A, Bates TC, Fisher SE, and Luciano M
- Published
- 2023
- Full Text
- View/download PDF
46. Discovery of 42 genome-wide significant loci associated with dyslexia.
- Author
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Doust C, Fontanillas P, Eising E, Gordon SD, Wang Z, Alagöz G, Molz B, Pourcain BS, Francks C, Marioni RE, Zhao J, Paracchini S, Talcott JB, Monaco AP, Stein JF, Gruen JR, Olson RK, Willcutt EG, DeFries JC, Pennington BF, Smith SD, Wright MJ, Martin NG, Auton A, Bates TC, Fisher SE, and Luciano M
- Subjects
- Child, Adult, Humans, Reading, Language, Asian People, Genome-Wide Association Study, Dyslexia genetics, Dyslexia psychology
- Abstract
Reading and writing are crucial life skills but roughly one in ten children are affected by dyslexia, which can persist into adulthood. Family studies of dyslexia suggest heritability up to 70%, yet few convincing genetic markers have been found. Here we performed a genome-wide association study of 51,800 adults self-reporting a dyslexia diagnosis and 1,087,070 controls and identified 42 independent genome-wide significant loci: 15 in genes linked to cognitive ability/educational attainment, and 27 new and potentially more specific to dyslexia. We validated 23 loci (13 new) in independent cohorts of Chinese and European ancestry. Genetic etiology of dyslexia was similar between sexes, and genetic covariance with many traits was found, including ambidexterity, but not neuroanatomical measures of language-related circuitry. Dyslexia polygenic scores explained up to 6% of variance in reading traits, and might in future contribute to earlier identification and remediation of dyslexia., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
47. Light-induced asymmetries in embryonic retinal gene expression are mediated by the vascular system and extracellular matrix.
- Author
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Versace E, Sgadò P, George J, Loveland JL, Ward J, Thorpe P, Jensen LJ, Spencer KA, Paracchini S, and Vallortigara G
- Subjects
- Animals, Extracellular Matrix, Gene Expression, Retina, Chickens physiology, Functional Laterality physiology
- Abstract
Left-right asymmetries in the nervous system (lateralisation) influence a broad range of behaviours, from social responses to navigation and language. The role and pathways of endogenous and environmental mechanisms in the ontogeny of lateralisation remains to be established. The domestic chick is a model of both endogenous and experience-induced lateralisation driven by light exposure. Following the endogenous rightward rotation of the embryo, the asymmetrical position in the egg results in a greater exposure of the right eye to environmental light. To identify the genetic pathways activated by asymmetric light stimulation, and their time course, we exposed embryos to different light regimes: darkness, 6 h of light and 24 h of light. We used RNA-seq to compare gene expression in the right and left retinas and telencephalon. We detected differential gene expression in right vs left retina after 6 h of light exposure. This difference was absent in the darkness condition and had already disappeared by 24 h of light exposure, suggesting that light-induced activation is a self-terminating phenomenon. This transient effect of light exposure was associated with a downregulation of the sensitive-period mediator gene DIO2 (iodothyronine deiodinase 2) in the right retina. No differences between genes expressed in the right vs. left telencephalon were detected. Gene networks associated with lateralisation were connected to vascularisation, cell motility, and the extracellular matrix. Interestingly, we know that the extracellular matrix-including the differentially expressed PDGFRB gene-is involved in morphogenesis, sensitive periods, and in the endogenous chiral mechanism of primary cilia, that drives lateralisation. Our data show a similarity between endogenous and experience-driven lateralisation, identifying functional gene networks that affect lateralisation in a specific time window., (© 2022. The Author(s).)
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- 2022
- Full Text
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48. Low-Pressure Laparoscopy Using the AirSeal System versus Standard Insufflation in Early-Stage Endometrial Cancer: A Multicenter, Retrospective Study (ARIEL Study).
- Author
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Buda A, Di Martino G, Borghese M, Restaino S, Surace A, Puppo A, Paracchini S, Ferrari D, Perotto S, Novelli A, De Ponti E, Borghi C, Fanfani F, and Fruscio R
- Abstract
The aim of our study was to evaluate the benefits of a low-pressure insufflation system (AirSeal) vs. a standard insufflation system in terms of anesthesiologists’ parameters and postoperative pain in patients undergoing laparoscopic surgery for early-stage endometrial cancer. This retrospective study involved five tertiary centers and included 152 patients with apparent early-stage disease who underwent laparoscopic surgical staging with either the low-pressure AirSeal system (8−10 mmHg, n = 84) or standard laparoscopic insufflation (10−12 mmHg, n = 68). All the intraoperative anesthesia variables evaluated (systolic blood pressure, end-tidal CO2, peak airway pressure) were significantly lower in the AirSeal group. We recorded a statistically significant difference between the two groups in the median NRS scores for global pain recorded at 4, 8, and 24 h, and for overall shoulder pain after surgery. Significantly more women in the AirSeal group were also discharged on day one compared to the standard group. All such results were confirmed when analyzing the subgroup of women with a BMI >30 kg/m2. In conclusion, according to our preliminary study, low-pressure laparoscopy represents a valid alternative to standard laparoscopy and could facilitate the development of outpatient surgery.
- Published
- 2022
- Full Text
- View/download PDF
49. Quantitative multidimensional phenotypes improve genetic analysis of laterality traits.
- Author
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Schmitz J, Zheng M, Lui KFH, McBride C, Ho CS, and Paracchini S
- Subjects
- Child, Humans, Longitudinal Studies, Phenotype, Twins genetics, Foot, Functional Laterality genetics
- Abstract
Handedness is the most commonly investigated lateralised phenotype and is usually measured as a binary left/right category. Its links with psychiatric and neurodevelopmental disorders prompted studies aimed at understanding the underlying genetics, while other measures and side preferences have been less studied. We investigated the heritability of hand, as well as foot, and eye preference by assessing parental effects (n ≤ 5028 family trios) and SNP-based heritability (SNP-h
2 , n ≤ 5931 children) in the Avon Longitudinal Study of Parents and Children (ALSPAC). An independent twin cohort from Hong Kong (n = 358) was used to replicate results from structural equation modelling (SEM). Parental left-side preference increased the chance of an individual to be left-sided for the same trait, with stronger maternal than paternal effects for footedness. By regressing out the effects of sex, age, and ancestry, we transformed laterality categories into quantitative measures. The SNP-h2 for quantitative handedness and footedness was 0.21 and 0.23, respectively, which is higher than the SNP-h2 reported in larger genetic studies using binary handedness measures. The heritability of the quantitative measure of handedness increased (0.45) compared to a binary measure for writing hand (0.27) in the Hong Kong twins. Genomic and behavioural SEM identified a shared genetic factor contributing to handedness, footedness, and eyedness, but no independent effects on individual phenotypes. Our analysis demonstrates how quantitative multidimensional laterality phenotypes are better suited to capture the underlying genetics than binary traits., (© 2022. The Author(s).)- Published
- 2022
- Full Text
- View/download PDF
50. Handedness in twins: meta-analyses.
- Author
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Pfeifer LS, Schmitz J, Papadatou-Pastou M, Peterburs J, Paracchini S, and Ocklenburg S
- Subjects
- Birth Weight, Humans, Prevalence, Twins, Monozygotic genetics, Functional Laterality genetics, Twins, Dizygotic genetics
- Abstract
Background: In the general population, 10.6% of people favor their left hand over the right for motor tasks. Previous research suggests higher prevalence of atypical (left-, mixed-, or non-right-) handedness in (i) twins compared to singletons, and in (ii) monozygotic compared to dizygotic twins. Moreover, (iii) studies have shown a higher rate of handedness concordance in monozygotic compared to dizygotic twins, in line with genetic factors playing a role for handedness., Methods: By means of a systematic review, we identified 59 studies from previous literature and performed three sets of random effects meta-analyses on (i) twin-to-singleton Odds Ratios (21 studies, n = 189,422 individuals) and (ii) monozygotic-to-dizygotic twin Odds Ratios (48 studies, n = 63,295 individuals), both times for prevalence of left-, mixed-, and non-right-handedness. For monozygotic and dizygotic twin pairs we compared (iii) handedness concordance Odds Ratios (44 studies, n = 36,217 twin pairs). We also tested for potential effects of moderating variables, such as sex, age, the method used to assess handedness, and the twins' zygosity., Results: We found (i) evidence for higher prevalence of left- (Odds Ratio = 1.40, 95% Confidence Interval = [1.26, 1.57]) and non-right- (Odds Ratio = 1.36, 95% Confidence Interval = [1.22, 1.52]), but not mixed-handedness (Odds Ratio = 1.08, 95% Confidence Interval = [0.52, 2.27]) among twins compared to singletons. We further showed a decrease in Odds Ratios in more recent studies (post-1975: Odds Ratio = 1.30, 95% Confidence Interval = [1.17, 1.45]) compared to earlier studies (pre-1975: Odds Ratio = 1.90, 95% Confidence Interval = [1.59-2.27]). While there was (ii) no difference between monozygotic and dizygotic twins regarding prevalence of left- (Odds Ratio = 0.98, 95% Confidence Interval = [0.89, 1.07]), mixed- (Odds Ratio = 0.96, 95% Confidence Interval = [0.46, 1.99]), or non-right-handedness (Odds Ratio = 1.01, 95% Confidence Interval = [0.91, 1.12]), we found that (iii) handedness concordance was elevated among monozygotic compared to dizygotic twin pairs (Odds Ratio = 1.11, 95% Confidence Interval = [1.06, 1.18]). By means of moderator analyses, we did not find evidence for effects of potentially confounding variables., Conclusion: We provide the largest and most comprehensive meta-analysis on handedness in twins. Although a raw, unadjusted analysis found a higher prevalence of left- and non-right-, but not mixed-handedness among twins compared to singletons, left-handedness was substantially more prevalent in earlier than in more recent studies. The single large, recent study which included birth weight, Apgar score and gestational age as covariates found no twin-singleton difference in handedness rate, but these covariates could not be included in the present meta-analysis. Together, the secular shift and the influence of covariates probably make it unsafe to conclude that twinning has a genuine relationship to handedness., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
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