182 results on '"Christian, Baumgartner"'
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2. Shedding Light on Cardiac Excitation: In Vitro and In Silico Analysis of Native Ca2+ Channel Activation in Guinea Pig Cardiomyocytes Using Organic Photovoltaic Devices.
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Theresa Rienmüller, Niroj Shrestha, Mathias Polz, Sara Stoppacher, Daniel Ziesel, Ludovico Migliaccio, Brigitte Pelzmann, Petra Lang, Klaus Zorn-Pauly, Sonja Langthaler, Aleksandar Opancar, Christian Baumgartner, Muammer üçal, Rainer Schindl, Vedran Derek, and Susanne Scheruebel
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- 2024
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3. How enoxaparin underdosing and sex contribute to achieving therapeutic anti-Xa levels
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Alexander Tinchon, Joana Brait, Sascha Klee, Uwe Graichen, Christian Baumgartner, Oliver Friedrich, Elisabeth Freydl, Stefan Oberndorfer, Walter Struhal, Barbara Hain, Christoph Waiß, and Dagmar Stoiber
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anti-Xa ,enoxaparin ,underdosing ,sex ,gender ,therapeutic ,Therapeutics. Pharmacology ,RM1-950 - Abstract
IntroductionAnti-Xa serves as a clinical surrogate for assessing the efficacy and bleeding risk in patients treated with enoxaparin for thromboembolic events. Evidence from the literature and empirical observations suggest that patients are underdosed in clinical practice to avoid bleeding complications. This study aimed to investigate such underdosing of enoxaparin and its potential impact on achieving therapeutic anti-Xa levels.MethodsThis multicentric, retrospective, observational study included patients with acute ischemic stroke due to atrial fibrillation. All patients received enoxaparin in the therapeutic setting with subsequent anti-Xa measurements. The one-sample, one-tailed Wilcoxon signed-rank test was used to identify a significant difference between the doses administered and the recommended daily dose. Logistic regression model analysis was performed to identify additional predictors affecting achievement of the therapeutic anti-Xa target range. Stepwise forward-backward selection with Akaike’s information criterion as metric was applied to refine the logistic regression model.ResultsA total of 145 patients from the university hospitals of St. Pölten and Tulln in Lower Austria were included. The median daily enoxaparin dose administered was 1.23 mg/kg, resulting in an overall target range achievement rate of 66%. As compared to recommended therapeutic doses, significant underdosing of enoxaparin was evident in both participating centers (p < 0.001). The calculated threshold dose to achieve the therapeutic target range with a 90% probability was 1.5 mg/kg enoxaparin daily. Female sex was found to be a strong independent predictor of achieving a therapeutic target range (OR 9.44; 95% CI 3.40–30.05, p < 0.001).ConclusionDespite the underdosing observed in both centers, therapeutic anti-Xa levels were achieved with lower than recommended doses of enoxaparin, and women required even lower doses than men. These findings warrant further confirmation by prospective studies.
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- 2024
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4. The bioelectric mechanisms of local calcium dynamics in cancer cell proliferation: an extension of the A549 in silico cell model
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Sonja Langthaler, Christian Zumpf, Theresa Rienmüller, Niroj Shrestha, Julia Fuchs, Rui Zhou, Brigitte Pelzmann, Klaus Zorn-Pauly, Eleonore Fröhlich, Seth H. Weinberg, and Christian Baumgartner
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in silico models ,electrophysiology ,calcium dynamics ,A549 cell line ,cancer ,Biology (General) ,QH301-705.5 - Abstract
IntroductionAdvances in molecular targeting of ion channels may open up new avenues for therapeutic approaches in cancer based on the cells’ bioelectric properties. In addition to in-vitro or in-vivo models, in silico models can provide deeper insight into the complex role of electrophysiology in cancer and reveal the impact of altered ion channel expression and the membrane potential on malignant processes. The A549 in silico model is the first computational cancer whole-cell ion current model that simulates the bioelectric mechanisms of the human non-small cell lung cancer cell line A549 during the different phases of the cell cycle. This work extends the existing model with a detailed mathematical description of the store-operated Ca2+ entry (SOCE) and the complex local intracellular calcium dynamics, which significantly affect the entire electrophysiological properties of the cell and regulate cell cycle progression.MethodsThe initial model was extended by a multicompartmental approach, addressing the heterogenous calcium profile and dynamics in the ER-PM junction provoked by local calcium entry of store-operated calcium channels (SOCs) and uptake by SERCA pumps. Changes of cytosolic calcium levels due to diffusion from the ER-PM junction, release from the ER by RyR channels and IP3 receptors, as well as corresponding PM channels were simulated and the dynamics evaluated based on calcium imaging data. The model parameters were fitted to available data from two published experimental studies, showing the function of CRAC channels and indirectly of IP3R, RyR and PMCA via changes of the cytosolic calcium levels.ResultsThe proposed calcium description accurately reproduces the dynamics of calcium imaging data and simulates the SOCE mechanisms. In addition, simulations of the combined A549-SOCE model in distinct phases of the cell cycle demonstrate how Ca2+ - dynamics influence responding channels such as KCa, and consequently modulate the membrane potential accordingly.DiscussionLocal calcium distribution and time evolution in microdomains of the cell significantly impact the overall electrophysiological properties and exert control over cell cycle progression. By providing a more profound description, the extended A549-SOCE model represents an important step on the route towards a valid model for oncological research and in silico supported development of novel therapeutic strategies.
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- 2024
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5. Introduction to the Minitrack on Healthcare Applications for Personal Vehicles.
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Michael H. Breitner, Christian Baumgartner, Thomas M. Deserno, and Andreas Rausch 0001
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- 2024
6. Deep Learning-Based Image Registration in Dynamic Myocardial Perfusion CT Imaging.
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Karen Andrea Lara Hernandez, Theresa Rienmüller, Ivan Alexander Juárez, Michaelle Alexander Perez Riz, Favio Reyna, Daniela Baumgartner, Vladimir N. Makarenko, Olga L. Bockeria, Musaffar F. Maksudov, Rainer Rienmüller, and Christian Baumgartner
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- 2023
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7. A regulatory challenge for natural language processing (NLP)‐based tools such as ChatGPT to be legally used for healthcare decisions. Where are we now?
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Christian Baumgartner and Daniela Baumgartner
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artificial intelligence ,ChatGPT ,healthcare decisions ,natural language processing (NLP) ,regulatory approval ,software as medical device (SaMD) ,Medicine (General) ,R5-920 - Published
- 2023
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8. AEPUS: a tool for the Automated Extraction of Pennation angles in Ultrasound images with low Signal-to-noise ratio for plane-wave imaging.
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Sergei Vostrikov, Andrea Cossettini, Christoph Leitner, Christian Baumgartner, and Luca Benini
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- 2022
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9. The world’s first digital cell twin in cancer electrophysiology: a digital revolution in cancer research?
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Christian Baumgartner
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Digital cancer cell twins ,In-silico models ,Cancer electrophysiology ,A549 cells ,Human lung adenocarcinoma ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background The introduction of functional in-silico models, in addition to in-vivo tumor models, opens up new and unlimited possibilities in cancer research and drug development. The world's first digital twin of the A549 cell's electrophysiology in the human lung adenocarcinoma, unveiled in 2021, enables the investigation and evaluation of new research hypotheses about modulating the function of ion channels in the cell membrane, which are important for better understanding cancer development and progression, as well as for developing new drugs and predicting treatments. Main body The developed A549 in-silico model allows virtual simulations of the cell’s rhythmic oscillation of the membrane potential, which can trigger the transition between cell cycle phases. It is able to predict the promotion or interruption of cell cycle progression provoked by targeted activation and inactivation of ion channels, resulting in abnormal hyper- or depolarization of the membrane potential, a potential key signal for the known cancer hallmarks. For example, model simulations of blockade of transient receptor potential cation channels (TRPC6), which are highly expressed during S-G2/M transition, result in a strong hyperpolarization of the cell’s membrane potential that can suppress or bypass the depolarization required for the S-G2/M transition, allowing for possible cell cycle arrest and inhibition of mitosis. All simulated research hypotheses could be verified by experimental studies. Short conclusion Functional, non-phenomenological digital twins, ranging from single cells to cell–cell interactions to 3D tissue models, open new avenues for modern cancer research through "dry lab" approaches that optimally complement established in-vivo and in-vitro methods.
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- 2022
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10. Supercurrent diode effect and magnetochiral anisotropy in few-layer NbSe2
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Lorenz Bauriedl, Christian Bäuml, Lorenz Fuchs, Christian Baumgartner, Nicolas Paulik, Jonas M. Bauer, Kai-Qiang Lin, John M. Lupton, Takashi Taniguchi, Kenji Watanabe, Christoph Strunk, and Nicola Paradiso
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Science - Abstract
The supercurrent diode effect was recently observed in a Nb/V/Ta superlattice thin film with Rashba-type spin-orbit coupling. Here, the authors observe this effect in few-layer NbSe2 crystals driven by valley-Zeeman-type spin-orbit coupling and find that the effect is proportional to out-of-plane magnetic field.
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- 2022
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11. A Human-Centered Machine-Learning Approach for Muscle-Tendon Junction Tracking in Ultrasound Images.
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Christoph Leitner, Robert Jarolim, Bernhard Englmair, Annika Kruse, Karen Andrea Lara Hernandez, Andreas Konrad, Eric Yung-Sheng Su, Jörg Schröttner, Luke A. Kelly, Glen A. Lichtwark, Markus Tilp, and Christian Baumgartner
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- 2022
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12. Comparing a mindfulness- and CBT-based guided self-help Internet- and mobile-based intervention against a waiting list control condition as treatment for adults with frequent cannabis use: a randomized controlled trial of CANreduce 3.0
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Michelle Dey, Andreas Wenger, Christian Baumgartner, Ute Herrmann, Mareike Augsburger, Severin Haug, Doris Malischnig, and Michael P. Schaub
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Cannabis ,Internet-based intervention ,Self-help ,Mindfulness ,Cognitive-behavioral therapy ,Randomized controlled trial ,Psychiatry ,RC435-571 - Abstract
Abstract Background Though Internet- and mobile-based interventions (IMIs) and mindfulness-based interventions (generally delivered in-situ) appear effective for people with substance use disorders, IMIs incorporating mindfulness are largely missing, including those targeting frequent cannabis use. Methods This paper details the protocol for a three-arm randomized controlled trial comparing a mindfulness-based self-help IMI (arm 1) and cognitive-behavioral therapy (CBT)-based self-help IMI (arm 2) versus being on a waiting list (arm 3) in their effectiveness reducing cannabis use in frequent cannabis users. Predictors of retention, adherence and treatment outcomes will be identified and similarities between the two active intervention arms explored. Both active interventions last six weeks and consist of eight modules designed to reduce cannabis use and common mental health symptoms. With a targeted sample size of n = 210 per treatment arm, data will be collected at baseline immediately before program use is initiated; at six weeks, immediately after program completion; and at three and six months post baseline assessment to assess the retention of any gains achieved during treatment. The primary outcome will be number of days of cannabis use over the preceding 30 days. Secondary outcomes will include further measures of cannabis use and use of other substances, changes in mental health symptoms and mindfulness, client satisfaction, intervention retention and adherence, and adverse effects. Data analysis will follow ITT principles and primarily employ (generalized) linear mixed models. Discussion This RCT will provide important insights into the effectiveness of an IMI integrating mindfulness to reduce cannabis use in frequent cannabis users. Trial registration International Standard Randomized Controlled Trial Number Registry: ISRCTN14971662 ; date of registration: 09/09/2021.
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- 2022
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13. A system theory based digital model for predicting the cumulative fluid balance course in intensive care patients
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Mathias Polz, Katharina Bergmoser, Martin Horn, Michael Schörghuber, Jasmina Lozanović, Theresa Rienmüller, and Christian Baumgartner
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fluid balance ,system theory ,transfer function model ,prediction ,intensive care ,decision support ,Physiology ,QP1-981 - Abstract
Background: Surgical interventions can cause severe fluid imbalances in patients undergoing cardiac surgery, affecting length of hospital stay and survival. Therefore, appropriate management of daily fluid goals is a key element of postoperative intensive care in these patients. Because fluid balance is influenced by a complex interplay of patient-, surgery- and intensive care unit (ICU)-specific factors, fluid prediction is difficult and often inaccurate.Methods: A novel system theory based digital model for cumulative fluid balance (CFB) prediction is presented using recorded patient fluid data as the sole parameter source by applying the concept of a transfer function. Using a retrospective dataset of n = 618 cardiac intensive care patients, patient-individual models were created and evaluated. RMSE analyses and error calculations were performed for reasonable combinations of model estimation periods and clinically relevant prediction horizons for CFB.Results: Our models have shown that a clinically relevant time horizon for CFB prediction with the combination of 48 h estimation time and 8–16 h prediction time achieves high accuracy. With an 8-h prediction time, nearly 50% of CFB predictions are within ±0.5 L, and 77% are still within the clinically acceptable range of ±1.0 L.Conclusion: Our study has provided a promising proof of principle and may form the basis for further efforts in the development of computational models for fluid prediction that do not require large datasets for training and validation, as is the case with machine learning or AI-based models. The adaptive transfer function approach allows estimation of CFB course on a dynamically changing patient fluid balance system by simulating the response to the current fluid management regime, providing a useful digital tool for clinicians in daily intensive care.
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- 2023
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14. The opportunities and pitfalls of ChatGPT in clinical and translational medicine
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Christian Baumgartner
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Medicine (General) ,R5-920 - Published
- 2023
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15. UStEMG: an Ultrasound Transparent Tattoo-based sEMG System for Unobtrusive Parallel Acquisitions of Muscle Electro-mechanics.
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Christoph Leitner, Simone Benatti, Kirill Keller, Andrea Cossettini, Victor Javier Kartsch, Harald Penasso, Luca Benini, Francesco Greco, and Christian Baumgartner
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- 2021
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16. Examining differential responses to the Take Care of Me trial: A latent class and moderation analysis
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Jona R. Frohlich, Karli K. Rapinda, Michael P. Schaub, Andreas Wenger, Christian Baumgartner, Edward A. Johnson, Matthijs Blankers, David D. Ebert, Heather D. Hadjistavropoulos, Corey S. Mackenzie, Jeffrey D. Wardell, Jason D. Edgerton, and Matthew T. Keough
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Alcohol use ,Emotional problems ,Latent class analysis ,Moderation ,Online treatment ,Psychology ,BF1-990 ,Social pathology. Social and public welfare. Criminology ,HV1-9960 - Abstract
Given prevalent alcohol misuse-emotional comorbidities among young adults, we developed an internet-based integrated treatment called Take Care of Me. Although the treatment had an impact on several secondary outcomes, effects were not observed for the primary outcome. Therefore, the goal of the current study was to examine heterogeneity in treatment responses. The initial RCT randomized participants to either a treatment or psychoeducational control condition. We conducted an exploratory latent class analysis to distinguish individuals based on pre-treatment risk and then used moderated regressions to examine differential treatment responses based on class membership. We found evidence for three distinct groups. Most participants fell in the “low severity” group (n = 123), followed by the “moderate severity” group (n = 57) who had a higher likelihood of endorsing a previous mental health diagnosis and treatment and higher symptom severity than the low group. The “high severity” group (n = 42) endorsed a family history of alcoholism, and the highest symptom severity and executive dysfunction. Moderated regressions revealed significant class differences in treatment responses. In the treatment condition, high severity (relative to low) participants reported higher alcohol consumption and hazardous drinking and lower quality of life at follow-up, whereas moderate severity (relative to low) individuals had lower alcohol consumption at follow-up, and lower hazardous drinking at end-of-treatment. No class differences were found for participants in the control group. Higher risk individuals in the treatment condition had poorer responses to the program. Tailoring interventions to severity may be important to examine in future research.
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- 2022
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17. Improved Tracking of Muscle Tendon Junctions in Ultrasound Images Using Speckle Reduction.
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Bernhard Englmair, Christoph Leitner, and Christian Baumgartner
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- 2020
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18. Modeling External Stimulation of Excitable Cells Using a Novel Light-Activated Organic Semiconductor Technology.
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Sara Stoppacher, Susanne Scheruebel, Muammer üçal, Karin Kornmüller, Eric Glowacki, Rainer Schindl, Niroj Shrestha, Tony Schmidt, Christian Baumgartner, and Theresa Rienmüller
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- 2020
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19. Automatic Tracking of the Muscle Tendon Junction in Healthy and Impaired Subjects using Deep Learning*.
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Christoph Leitner, Robert Jarolim, Andreas Konrad, Annika Kruse, Markus Tilp, Jörg Schröttner, and Christian Baumgartner
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- 2020
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20. Cannabis Use in Adults Who Screen Positive for Attention Deficit/Hyperactivity Disorder: CANreduce 2.0 Randomized Controlled Trial Subgroup Analysis
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Joachim Ahlers, Christian Baumgartner, Mareike Augsburger, Andreas Wenger, Doris Malischnig, Nikolaos Boumparis, Thomas Berger, Lars Stark, David D Ebert, Severin Haug, and Michael P Schaub
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundPrevalence rates for lifetime cannabis use and cannabis use disorder are much higher in people with attention deficit/hyperactivity disorder than in those without. CANreduce 2.0 is an intervention that is generally effective at reducing cannabis use in cannabis misusers. This self-guided web-based intervention (6-week duration) consists of modules grounded in motivational interviewing and cognitive behavioral therapy. ObjectiveWe aimed to evaluate whether the CANreduce 2.0 intervention affects cannabis use patterns and symptom severity in adults who screen positive for attention deficit/hyperactivity disorder more than in those who do not. MethodsWe performed a secondary analysis of data from a previous study with the inclusion criterion of cannabis use at least once weekly over the last 30 days. Adults with and without attention deficit/hyperactivity disorder (based on the Adult Attention deficit/hyperactivity disorder Self-Report screener) who were enrolled to the active intervention arms of CANreduce 2.0 were compared regarding the number of days cannabis was used in the preceding 30 days, the cannabis use disorder identification test score (CUDIT) and the severity of dependence scale score (SDS) at baseline and the 3-month follow-up. Secondary outcomes were Generalized Anxiety Disorder score, Center for Epidemiological Studies Depression scale score, retention, intervention adherence, and safety. ResultsBoth adults with (n=94) and without (n=273) positive attention-deficit/hyperactivity disorder screening reported significantly reduced frequency (reduction in consumption days: with: mean 11.53, SD 9.28, P
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- 2022
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21. Ensemble Based Approach for Time Series Classification in Metabolomics.
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Michael Netzer, Friedrich Hanser, Marc Breit, Klaus M. Weinberger, Christian Baumgartner, and Daniel Baumgarten
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- 2019
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22. Efficacy of a minimally guided internet treatment for alcohol misuse and emotional problems in young adults: Results of a randomized controlled trial
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Jona R. Frohlich, Karli K. Rapinda, Michael P. Schaub, Andreas Wenger, Christian Baumgartner, Edward A. Johnson, Roisin M. O'Connor, Norah Vincent, Matthijs Blankers, David D. Ebert, Heather D. Hadjistavropoulos, Corey S. Mackenzie, Jeffrey D. Wardell, Mareike Augsburger, Joel O. Goldberg, and Matthew T. Keough
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Alcohol misuse ,Depression ,Anxiety ,Cognitive behavioural therapy ,Motivational interviewing ,Integrated treatment ,Psychology ,BF1-990 ,Social pathology. Social and public welfare. Criminology ,HV1-9960 - Abstract
Objective: Many young adults struggle with comorbid alcohol misuse and emotional problems (i.e., depression and anxiety). However, there is currently a paucity of evidence-based, integrated, accessible treatment options for individuals with these comorbidities. The main goal of this study was to examine efficacy of a novel online, minimally guided, integrated program for comorbid alcohol misuse and emotional problems in young adults. Method: The study was an open-label two-arm RCT. Participants (N = 222, Mage = 24.6, 67.6% female) were randomized to one of two conditions: the Take Care of Me program (an 8-week, online integrated treatment condition consisting of 12 modules), or an online psychoeducational control condition. Intervention modules incorporated content based on principles of cognitive behavioral therapy and motivational interviewing. Participants completed assessment data at baseline, at the end of treatment (i.e., 8 weeks), and at follow-up (i.e., 24 weeks). Data were analyzed using generalized linear mixed models. Results: We observed that participants in the treatment condition showed larger reductions in depression, hazardous drinking, as well as increases in psychological quality of life and confidence at the end of treatment. We did not find group differences on total alcohol use at follow-up, but participants in the treatment group reduced their hazardous drinking and improved their quality of life at 24-week follow-up. Conclusions: Our study provides promising initial evidence for the first iteration of the comorbid alcohol misuse and emotional problems online program.
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- 2021
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23. The Effectiveness of a Web-Based Self-Help Program to Reduce Alcohol Use Among Adults With Drinking Patterns Considered Harmful, Hazardous, or Suggestive of Dependence in Four Low- and Middle-Income Countries: Randomized Controlled Trial
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Michael P Schaub, Marcela Tiburcio, Nora Martínez-Vélez, Atul Ambekar, Roshan Bhad, Andreas Wenger, Christian Baumgartner, Dzianis Padruchny, Sergey Osipchik, Vladimir Poznyak, Dag Rekve, Fabricio Landi Moraes, André Luiz Monezi Andrade, and Maria Lucia Oliveira Souza-Formigoni
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundGiven the scarcity of alcohol prevention and use disorder treatments in many low- and middle-income countries (LMICs), the World Health Organization has launched an eHealth portal that includes the web-based self-help program “Alcohol e-Health.” ObjectiveWe aimed to test the effectiveness of the Alcohol e-Health program in a randomized controlled trial. MethodsThis was a two-arm, individually randomized, and controlled trial across four LMICs comparing the self-help program and a psychoeducation and internet access as usual waiting list. Participants were broadly recruited from community samples in Belarus, Brazil, India, and Mexico from January 2016 through January 2019. The primary outcome measure was change in the Alcohol Use Disorders Identification Test (AUDIT) score with a time frame of 6 months between baseline and follow-up. Secondary outcomes included self-reported numbers of standard drinks over the previous week and cessation of harmful or hazardous drinking (AUDIT score
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- 2021
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24. A novel hybrid modeling approach for the evaluation of integrated care and economic outcome in heart failure treatment
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Alexander Lassnig, Theresa Rienmueller, Diether Kramer, Werner Leodolter, Christian Baumgartner, and Joerg Schroettner
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Agent based ,Discrete event ,Heart failure treatment model ,Health economic modeling ,Integrated care ,Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract Background Demographic changes, increased life expectancy and the associated rise in chronic diseases pose challenges to public health care systems. Optimized treatment methods and integrated concepts of care are potential solutions to overcome increasing financial burdens and improve quality of care. In this context modeling is a powerful tool to evaluate potential benefits of different treatment procedures on health outcomes as well as health care budgets. This work presents a novel modeling approach for simulating different treatment procedures of heart failure patients based on extensive data sets from outpatient and inpatient care. Methods Our hybrid heart failure model is based on discrete event and agent based methodologies and facilitates the incorporation of different therapeutic procedures for outpatient and inpatient care on patient individual level. The state of health is modeled with the functional classification of the New York Heart Association (NYHA), strongly affecting discrete state transition probabilities alongside age and gender. Cooperation with Austrian health care and health insurance providers allowed the realization of a detailed model structure based on clinical data of more than 25,000 patients. Results Simulation results of conventional care and a telemonitoring program underline the unfavorable prognosis for heart failure and reveal the correlation of NYHA classes with health and economic outcomes. Average expenses for the treatment of NYHA class IV patients of €10,077 ± €165 were more than doubled compared to other classes. The selected use case of a telemonitoring program demonstrated potential cost savings within two years of application. NYHA classes II and III revealed most potential for additional treatment measures. Conclusion The presented model allows performing extensive simulations of established treatment procedures for heart failure patients and evaluating new holistic methods of care and innovative study designs. This approach offers health care providers a unique, adaptable and comprehensive tool for decision making in the complex and socioeconomically challenging field of cardiovascular diseases.
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- 2019
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25. A549 in-silico 1.0: A first computational model to simulate cell cycle dependent ion current modulation in the human lung adenocarcinoma.
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Sonja Langthaler, Theresa Rienmüller, Susanne Scheruebel, Brigitte Pelzmann, Niroj Shrestha, Klaus Zorn-Pauly, Wolfgang Schreibmayer, Andrew Koff, and Christian Baumgartner
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Biology (General) ,QH301-705.5 - Abstract
Lung cancer is still a leading cause of death worldwide. In recent years, knowledge has been obtained of the mechanisms modulating ion channel kinetics and thus of cell bioelectric properties, which is promising for oncological biomarkers and targets. The complex interplay of channel expression and its consequences on malignant processes, however, is still insufficiently understood. We here introduce the first approach of an in-silico whole-cell ion current model of a cancer cell, in particular of the A549 human lung adenocarcinoma, including the main functionally expressed ion channels in the plasma membrane as so far known. This hidden Markov-based model represents the electrophysiology behind proliferation of the A549 cell, describing its rhythmic oscillation of the membrane potential able to trigger the transition between cell cycle phases, and it predicts membrane potential changes over the cell cycle provoked by targeted ion channel modulation. This first A549 in-silico cell model opens up a deeper insight and understanding of possible ion channel interactions in tumor development and progression, and is a valuable tool for simulating altered ion channel function in lung cancer electrophysiology.
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- 2021
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26. Improving Fluid Management in Critical Care - Towards the ICU of the Future.
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Katharina Bergmoser, Lucas Pflanzl-Knizacek, Matthias Hafner, Gernot Schilcher, and Christian Baumgartner
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- 2018
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27. Development of a Clinical Decision Support System in Intensive Care.
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Lucas Pflanzl-Knizacek, Katharina Bergmoser, Karin Mattersdorfer, Gernot Schilcher, and Christian Baumgartner
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- 2018
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28. A Systematic Review of the Transthoracic Impedance during Cardiac Defibrillation.
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Yasmine Heyer, Daniela Baumgartner, and Christian Baumgartner
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- 2022
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29. Creating a Novel Mathematical Model of the Kv10.1 Ion Channel and Controlling Channel Activity with Nanoelectromechanical Systems
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Jasmina Lozanović Šajić, Sonja Langthaler, and Christian Baumgartner
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nanoelectromechanical system (NEMS) ,nanorobots ,ion channel Kv10.1 ,mathematical modeling ,system identification ,control algorithm ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The use of nanoelectromechanical systems or nanorobots offers a new concept for sensing and controlling subcellular structures, such as ion channels. We present here a novel method for mathematical modeling of ion channels based on control system theory and system identification. We investigated the use of nanoelectromechanical devices to control the activity of ion channels, particularly the activity of the voltage-gated ion channel Kv10.1, an important channel in cancer development and progression. A mathematical model of the dynamic behavior of the selected ion channel Kv10.1 in the Laplace (s) domain was developed, which is given in the representation of a transfer function. In addition, we addressed the possibilities of controlling ion channel activity by nanoelectromechanical devices and nanorobots and finally presented a control algorithm for the Kv10.1 as a control object. A use case demonstrates the potential of a Kv10.1 controlled nanorobot for cancer treatment at a single-cell level.
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- 2022
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30. Ion Channel Modeling beyond State of the Art: A Comparison with a System Theory-Based Model of the Shaker-Related Voltage-Gated Potassium Channel Kv1.1
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Sonja Langthaler, Jasmina Lozanović Šajić, Theresa Rienmüller, Seth H. Weinberg, and Christian Baumgartner
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ion channels ,electrophysiology ,computational model ,Hodgkin–Huxley ,hidden Markov model ,system and control theory ,Cytology ,QH573-671 - Abstract
The mathematical modeling of ion channel kinetics is an important tool for studying the electrophysiological mechanisms of the nerves, heart, or cancer, from a single cell to an organ. Common approaches use either a Hodgkin–Huxley (HH) or a hidden Markov model (HMM) description, depending on the level of detail of the functionality and structural changes of the underlying channel gating, and taking into account the computational effort for model simulations. Here, we introduce for the first time a novel system theory-based approach for ion channel modeling based on the concept of transfer function characterization, without a priori knowledge of the biological system, using patch clamp measurements. Using the shaker-related voltage-gated potassium channel Kv1.1 (KCNA1) as an example, we compare the established approaches, HH and HMM, with the system theory-based concept in terms of model accuracy, computational effort, the degree of electrophysiological interpretability, and methodological limitations. This highly data-driven modeling concept offers a new opportunity for the phenomenological kinetic modeling of ion channels, exhibiting exceptional accuracy and computational efficiency compared to the conventional methods. The method has a high potential to further improve the quality and computational performance of complex cell and organ model simulations, and could provide a valuable new tool in the field of next-generation in silico electrophysiology.
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- 2022
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31. Covering Population Variability: Morphing of Computation Anatomical Models.
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Bryn A. Lloyd, Emilio Cherubini, Silvia Farcito, Esra Neufeld, Christian Baumgartner, and Niels Kuster
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- 2016
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32. Temperature-induced modulation of the electrophysiological behavior of A549 lung cancer cells
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Sonja Langthaler, Theresa Rienmüller, Jasmina Lozanović Šajić, and Christian Baumgartner
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Biomedical Engineering - Abstract
Cancer cells typically exhibit altered ion channel expression and membrane potential, wich plays an important role in various processes such as proliferation or apoptosis Hence, therapeutic strategies that modulate ion channel activity or shift the membrane potential prove to be promising for cancer therapy. Since temperature significantly affects ion channel function, deviation from normal body temperture might provide akey factor in electrophysiological progression. In this pilot study, we focused on a first insight into the temperature-induced modulation of A549 cells using an automated patch clamp system. Measurements of 14 cells at hypo-, normo- and hypertermia were accomplished to investigate the temperature-dependent electophysiological behavior. The results revealed that both, temperatures below and above normal body temperature affect the current and potential of A549 cells. In hyperthermia the potential tends to more hyperpolarized values, while conversely, in hypothermic conditions we observer mainly a lower current reponse and thus a depolarization of the membrane potential.
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- 2022
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33. The Kv10.1 voltage-gated ion channel modeling based on control system theory
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Jasmina Lozanović Šajić, Sonja Langthaler, and Christian Baumgartner
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Biomedical Engineering - Abstract
In this paper, we present a control system theory based modeling approach for the voltage-gated ion-channel Kv10.1 at different temperatures. Kv10.1 is expressed in the central nervous system and the brain of healthy humans. The study of the activity of this ion channel is important, because its activity is associated with the occurrence of cancer in different organs or tissues. According to systems and control theory, the voltage-gated channel Kv10.1 was assumed to be a linear time-invariant system and, as such, exhibits dynamic behavior. The experimental results show that Kv10.1 operates as a first-order model based on the input voltage step protocol and the measured macroscopic ion current output.
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- 2022
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34. Holistic Equivalent Circuit Model for Capacitive Extracellular Stimulation
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Mathias Polz, Thomas Rath, Gregor Trimmel, Sara Stoppacher, Marta Nowakowska, Karin Kornmüller, Niroj Shestha, Christian Baumgartner, and Theresa Rienmüller
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Biomedical Engineering - Abstract
Capacitive extracellular stimulation is a common method in implanted stimulation electrodes. The basis for investigating the transmission of stimuli from an electrode to adhered cells are in vitro experiments using calcium imaging or patch clamp measurements. Computational spatial models are used to simulate the mechanism of signal transmission at the cell-electrode interface but require high computing power. In this work, the Stern model to characterize the electrochemical double-layer (EDL) formation and a modified two-domain model are combined into a holistic equivalent circuit modelling capacitive cell stimulation. The described parameters can be directly associated with physicochemical effects. A simulation of the involved control and measurement systems allows the validation of the model with in vitro patch clamp recordings. The relationship of the cell’s distance to the electrode and efficacy of signal transmission could be observed. With this concept we aim to convert different complex approaches into a simple model and thus give an overview of the mechanisms of stimulation. We want to facilitate the interpretation of measured signals especially in voltage clamp measurements.
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- 2022
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35. Efficacy of a web-based self-help tool to reduce problem gambling in Switzerland: study protocol of a two-armed randomised controlled trial
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Yasser Khazaal, Christian Baumgartner, Elena Bilevicius, Sophia Achab, Susanne Schaaf, Andreas Wenger, Severin Haug, Matthew Keough, David Hodgins, and Michael P Schaub
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Medicine - Abstract
Introduction The past-year prevalence of problem gambling worldwide averages 2.3%. Switzerland exhibits a slightly lower past-year prevalence rate, of 1.1%, among adults. Only a minority of these adults attend outpatient treatment. Surveyed problem gamblers have explained that they wanted to handle the problem on their own. The option of a web-based self-help programme could potentially reach those users who hesitate to approach treatment centres and help them to reduce or stop their problem gambling. The effectiveness of such web-based interventions has been shown in other countries.Methods and analysis This two-armed randomised controlled trial (RCT) will examine the efficacy of a web-based self-help intervention, relative to an active control condition with a self-help manual, at reducing problem gambling. The active intervention programme, spanning 8 weeks, consists of nine modules developed to reduce gambling and attenuate psychopathological comorbidity, including depression, anxiety and stress-related disorder symptoms, relying on motivational interviewing and cognitive behavioural therapy. With a target sample size of 352, questionnaire data will be collected at baseline, and at 8 and 24 weeks after baseline. Primary outcomes will be the number of days one has gambled in the last 30 days. Secondary outcomes will include money and time spent on gambling activities, changes in gambling-related problems (Problem Gambling Severity Index, Gambling Symptom Assessment Scale), use of alcohol and cigarettes, and psychopathological comorbidity. All data analysis will comply with the intention-to-treat principle.Ethics and dissemination The RCT will be conducted in accordance with the Declaration of Helsinki; the consort eHealth Guidelines for studies on medical devices; the European Directive on medical devices 93/42/EEC, Swiss Law and Swiss Regulatory Authority requirements. The study was approved by the ethics committee of the Canton of Zurich. Results will be published in a scientific peer-reviewed journal. Participants will be informed via e-mail about study results via a lay-person-friendly summary of trial findings.Trial registration number Current Controlled Trials registry (ISRCTN16339434).
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- 2019
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36. Web-based self-help with and without chat counseling to reduce cocaine use in cocaine misusers: Results of a three-arm randomized controlled trial
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Michael P. Schaub, Raquel Paz Castro, Andreas Wenger, Christian Baumgartner, Lars Stark, David D. Ebert, Boris B. Quednow, and Severin Haug
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Information technology ,T58.5-58.64 ,Psychology ,BF1-990 - Abstract
Background: In recent years, cocaine use has increased in many countries, but only a minority of users seek treatment. Cognitive behavioral therapy (CBT) is seen as first-choice face-to-face treatment. However, a web-based intervention might serve as an alternative. Aims: To test the efficacy of a web-based self-help intervention, with and without chat counseling, grounded in CBT, at reducing cocaine use in cocaine misusers not in treatment for a substance use disorder. Methods: Subjects were randomly assigned to (1) a self-help intervention with chat support, (2) a self-help intervention without chat support, or (3) a waiting list control group. The fully-automated self-help program consisted of eight modules based on motivational interviewing, self-control practices and CBT. The primary outcome was the quantity of cocaine use per week. Secondary outcomes included frequency of cocaine and other substance use and mental health symptoms. Linear regression analysis was performed to investigate changes in primary and secondary outcomes. Results: In total, 416 users registered online for the trial, of whom 311 completed the baseline assessment. Participants were predominantly male (73%) and averaged 33 years old (SD = 7.6). Despite considerable efforts on our part, only 47 of 311 (15.1%) subjects completed the 6-month follow-up assessment. Frequency of cocaine use and severity of cocaine dependence decreased only in the intervention groups. No significant difference in the primary outcome was observed between the study arms, but several differences in secondary outcomes were observed by complete case analyses. Conclusions: Many cocaine misusers from the general population and not otherwise in treatment could be reached and decreased their cocaine use utilizing a CBT-based online intervention. However, due to the high percentage of dropouts and serious difficulties reaching subjects for follow-up assessments, no conclusions can be drawn regarding study arm differences. Implications for future studies are discussed. Keywords: Cocaine, Internet, Chat, Self-help, Cognitive Behavioral Therapy, Motivational Interviewing
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- 2019
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37. ChatGPT in Medicine: Ark of the Covenant or Pandora’s Box? Present status and future perspectives: how, what, who and where? (Preprint)
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Luis A. Marín-Castañeda, Jonathan Matías Chejfec-Ciociano, Véronique Verhoeven, Christian Baumgartner, Nino Fijačko, Gregor Štiglic, Lucija Gosak, Mohamed M. Arnaout, Naveen Manohar, Shruthi S. Prasad, Kaushik Bhattacharya, William C. Cho, Takanobu Hirosawa, and Ángel Lee
- Abstract
BACKGROUND ChatGPT, an artificial intelligence chatbot developed by OpenAI has ushered in a new era of possibilities, offering exciting opportunities for natural language processing in healthcare; it marks a clear paradigm shift in academic research, patient care, and clinical communication. However, a hurried and uninformed implementation of ChatGPT in healthcare settings can have unforeseen results. OBJECTIVE The objective of this study is to discuss and provide a comprehensive summary of the existing literature on ChatGPT based on insights derived from different research teams across diverse disciplines, focusing on the main applications in medicine as conceived by authors who have published on the subject. Furthermore, we seek to address potential concerns associated with the integration of ChatGPT in the medical field, while simultaneously opening up unexplored paths. METHODS The corresponding author selected a group of authors through an initial screening of papers published on ChatGPT from various databases. Based on the replies and their level of cooperation, a dozen authors were chosen for the study and included based on their cooperation and geographic representation. We conducted a comprehensive search across databases, including Web of Science, PubMed, and Scopus. The study followed the PRISMA guidelines for screening and selection. Analysis was performed on the selected articles (n=223), categorizing them based on article type, specialty, and specific role discussed. Descriptive statistics were calculated, and bibliometric analyses were conducted using VOSviewer. RESULTS We identified 223 peer-reviewed articles. Writing assistance emerged as the most widely discussed role of ChatGPT. The rest of the roles included: general use (16%, n=35), education tool (17%, n=37), solution and discussion of clinical vignettes (15%, n=34), valuing and predicting future impact (7%, n=15), information source (5%, n=12), and as a discussion forum about ethical issues (6%, n=14). To detect any difference in usage across continents, a chi-square test for distribution of categorical variables was carried out and yielded a p-value of P=0.56, in article type. Regarding specialty and the role of ChatGPT, the p-values were P=0.86 and P=0.87, respectively. We found no significant association between a specific geographic location and the distribution of any of the variables. CONCLUSIONS This study provides a comprehensive overview of the literature on ChatGPT, revealing its diverse range of applications as observed across different disciplines. By examining the concerns surrounding the integration of ChatGPT in medicine, we underscore the importance of responsible implementation and highlight the need for ongoing research and development in this area. Ultimately, this work opens new perspectives for the detection of unexplored paths and the realization of ChatGPT's potential in enhancing various domains, including medicine.
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- 2023
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38. Searching for the bomb spike in Danube river sediments: Extracting the anthropogenic impact of Vienna
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Diana Hatzenbühler, Michael Weißl, Christian Baumgartner, and Michael Wagreich
- Abstract
The Anthropocene, the strongly debated potential new unit of the Geological Time Scale, describes the intensified anthropogenic influence on the environment and geological processes, and its traces in geological archives. Regional studies characterizing the growth of human impact, the Anthropocene transformation, are scarce, especially for urban or per-urban environments.In this project, we investigate the anthropogenic impact of the metropolis Vienna on its peri-urban environment and the proposed beginning of the Anthropocene epoch in the 1950s CE by applying sedimentological and geochemical methods. In previous studies (Wagreich et al. 2022), the authors were able to successfully detect the human influence in urban sedimentary archives of Vienna (anthropogenic coarse sediments) using artificial isotopes and anthropogenic trace metals. For our project, we extend the study area from Vienna to the city of Hainburg to investigate Vienna’s anthropogenic impact in both anthropogenic and natural sediments downstream the Danube river. In this area, direct human intervention in the environment, such as ground excavations, backfill and damming, is highly variable, from locally strong (e.g., hydro-power dams, airport constructions), to not existing (National Park Donau-Auen), thus offering a suitable location to trace and quantify the extent of anthropogenic impact.Within petrographic facies, sedimentological and geochemical markers are applied to characterize the anthropogenic strata in this area: The archive of fine-grained natural Danube deposits, i.e. erosional profiles and sediment cores, is analysed for trace metals, artificial radiogenic isotopes, and microplastics with the aim (i) to disentangle the anthropogenic fingerprint of Vienna from the sediment, (ii) to identify and evaluate the proposed Anthropocene geological boundary around 1950 CE, and (iii) to evaluate a potential correlative stratigraphic reference section section/ point for the Anthropocene downstream of Vienna. Finally, the Carnuntum-Vienna Anthropocene field lab offers the opportunity to integrate environmental systems modelling with an Anthropocene equation approach for the temporal and spatial growth of the anthropogenic layers (iv).
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- 2023
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39. From Romans to the Anthropocene: Geoarchaeological Investigations in the Central Vienna Basin (Austria)
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Michael Weissl, Diana Hatzenbühler, Christian Baumgartner, and Michael Wagreich
- Abstract
The project »From Romans to the Anthropocene, from Carnuntum to Vienna: An Urban Anthropocene Field Lab« (WWTF ESR20-027) focuses on the urban transformation from the Roman legionary camps of Carnuntum and Vindobona to Vienna's periurban areas. Combining historical and geoarchaeological methods, we investigate the diverging development of the two sites and their manifold relations over time. The Danube river crosses the mountain ranges of the Wienerwald and Malé Karpaty, forming the eastern and western limits of the central Vienna Basin. For many centuries, the river was both a barrier and a transportation route. The floodplains and river terraces along the Danube served as concentration areas and battlegrounds during countless conflicts between central Europe and its enemies. The legionary camps of Carnuntum and Vindobona were built during the first century AD at the rim of glacial river terraces, next to the shortest passages across the Danube. During late antiquity, the former provincial capital Carnuntum lost importance. However, Vindobona became first a local center and later the capital of the Austrian rulers. After a sudden Turkish siege in 1529, the fortifications of Vienna were strengthened and maintained until the middle of the 19th century.Urban development of the region over the centuries was limited not only by permanent military threats. North of the Danube, agriculture was always restricted climatically by aridity and sand drift. Most settlements on the riverbanks of the Danube and its tributaries were affected frequently by floods and erosion. Many villages vanished completely as a consequence of such natural hazards. Since some decades, natural river dynamics have been restricted technically, and many areas under cultivation are now irrigated artificially. The analysis of the sedimentary record downstream of Vienna clearly shows the anthropogenic impact on sedimentation processes. Contrary to Carnuntum, Vienna could evolve from a legionary camp step by step into a capital and a strong fortress. The demolition of the city walls after the middle of the 19th century, the following long period of peace, and, in particular, the consequent river engineering, were preconditions for the development into a modern metropolis.
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- 2023
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40. Deep learning in spatiotemporal cardiac imaging: A review of methodologies and clinical usability.
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Karen Andrea Lara Hernandez, Theresa Rienmüller, Daniela Baumgartner, and Christian Baumgartner
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- 2021
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41. Whatsalp – A hiking study across the Alps
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Dominik Siegrist, Harry Spiess, Christian Baumgartner, and Gerhard Stürzlinger
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Environmental sciences ,GE1-350 ,Geography (General) ,G1-922 - Published
- 2018
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42. Impact of errors in paper-based and computerized diabetes management with decision support for hospitalized patients with type 2 diabetes. A post-hoc analysis of a before and after study.
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Klaus Donsa, Peter Beck, Bernhard Höll, Julia K. Mader, Lukas Schaupp, Johannes Plank, Katharina Neubauer, Christian Baumgartner, and Thomas R. Pieber
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- 2016
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43. MUMAL2: Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm.
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Fabio Ribeiro Cerqueira, Adilson Mendes Ricardo, Alcione de Paiva Oliveira, Armin Graber, and Christian Baumgartner
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- 2016
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44. Model-Based Vestibular Afferent Stimulation: Evaluating Selective Electrode Locations and Stimulation Waveform Shapes
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Peter Schier, Michael Handler, Lejo Johnson Chacko, Anneliese Schrott-Fischer, Karl Fritscher, Rami Saba, Christian Baumgartner, and Daniel Baumgarten
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vestibular ,implant ,human ,electrical stimulation ,selectivity ,energy ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
A dysfunctional vestibular system can be a severe detriment to the quality of life of a patient. Recent studies have shown the feasibility for a vestibular implant to restore rotational sensation via electrical stimulation of vestibular ampullary nerves. However, the optimal stimulation site for selective elicitation of the desired nerve is still unknown. We realized a finite element model on the basis of μCT scans of a human inner ear and incorporated naturally distributed, artificial neural trajectories. A well-validated neuron model of myelinated fibers was incorporated to predict nerve responses to electrical stimulation. Several virtual electrodes were placed in locations of interest inside the bony labyrinth (intra-labyrinthine) and inside the temporal bone, near the target nerves (extra-labyrinthine), to determine preferred stimulation sites and electrode insertion depths. We investigated various monopolar and bipolar electrode configurations as well as different pulse waveform shapes for their ability to selectively stimulate the target nerve and for their energy consumption. The selectivity was evaluated with an objective measure of the fiber recruitment. Considerable differences of required energy and achievable selectivity between the configurations were observed. Bipolar, intra-labyrinthine electrodes provided the best selectivities but also consumed the highest amount of energy. Bipolar, extra-labyrinthine configurations did not offer any advantages compared to the monopolar approach. No selective stimulation could be performed with the monopolar, intra-labyrinthine approach. The monopolar, extra-labyrinthine electrodes required the least energy for satisfactory selectivities, making it the most promising approach for functional vestibular implants. Different pulse waveform shapes did not affect the achieved selectivity considerably but shorter pulse durations showed consistently a more selective activation of the target nerves. A cathodic, centered triangular waveform shape was identified as the most energy-efficient of the tested shapes. Based on these simulations we are able to recommend the monopolar, extra-labyrinthine stimulation approach with cathodic, centered triangular pulses as good trade-off between selectivity and energy consumption. Future implant designs could benefit from the findings presented here.
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- 2018
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45. Die Autoren
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Johann Harer and Christian Baumgartner
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- 2021
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46. Safety Requirements for Medical Devices in Compliance with European Standards
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Robert Neubauer, Jörg Schröttner, and Christian Baumgartner
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- 2022
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47. Digitale Polizeiarbeit in der Zukunft
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Christian Baumgartner
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- 2022
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48. Best Research Papers in the Field of Sensors, Signals, and Imaging Informatics 2021
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Christian Baumgartner and Thomas M. Deserno
- Subjects
Diagnostic Imaging ,Machine Learning ,Consensus ,Databases, Factual ,General Medicine ,Medical Informatics - Abstract
Objectives: In this synopsis, we identify and highlight research papers representing noteworthy developments in signals, sensors, and imaging informatics in 2021. Methods: A broad literature search was conducted on PubMed and Scopus databases. We combined Medical Subject Heading (MeSH) terms and keywords to construct particular queries for sensors, signals, and imaging informatics. Except for the sensor section, we only consider papers that have been published in journals providing at least three articles in the query response. Using a three-point Likert scale (1=not include, 2=maybe include, and 3=include), we reviewed the titles and abstracts of all database returns. Only those papers which reached two times three points were further considered for full paper review using the same Likert scale. Again, we only considered works with two times three points and provided these for external reviews. Based on the external reviews, we selected three best papers, as it happens that the three highest ranked papers represent works from all three parts of this section: sensors, signals, and imaging informatics. Results: The search for papers was executed in January 2022. After removing duplicates and conference proceedings, the query returned a set of 88, 376, and 871 papers for sensors, signals, and imaging informatics, respectively. For signals and images, we filtered out journals that had less than three papers in the query results, reducing the number of papers to 215 and 512, respectively. From this total of 815 papers, the section co-editors identified 35 candidate papers with two times three Likert points, from which nine candidate best papers were nominated after full paper assessment. At least three external reviewers then rated the remaining papers and the three best-ranked papers were selected using the composite rating of all external reviewers. By accident, these three papers represent each of the three fields of sensor, signal, and imaging informatics. They were approved by consensus of the International Medical Informatics Association (IMIA) Yearbook editorial board. Deep and machine learning techniques are still a dominant topic as well as concepts beyond the state-of-the-art. Conclusions: Sensors, signals, and imaging informatics is a dynamic field of intense research. Current research focuses on creating and processing heterogeneous sensor data towards meaningful decision support in clinical settings.
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- 2022
49. Notable Papers and New Directions in Sensors, Signals, and Imaging Informatics
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William Hsu, Christian Baumgartner, and Thomas M. Deserno
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Diagnostic Imaging ,Biometry ,Imaging informatics ,Computer science ,Image processing ,Section 4: Sensor, Signal and Imaging Informatics ,Health informatics ,Machine Learning ,Set (abstract data type) ,Medical imaging ,Humans ,medical informatics ,Information retrieval ,Sensors ,business.industry ,Reproducibility of Results ,signals ,Electroencephalography ,Subject (documents) ,General Medicine ,Informatics ,imaging informatics ,Synopsis ,Neural Networks, Computer ,Yearbook ,business - Abstract
Summary Objective: To identify and highlight research papers representing noteworthy developments in signals, sensors, and imaging informatics in 2020. Method: A broad literature search was conducted on PubMed and Scopus databases. We combined Medical Subject Heading (MeSH) terms and keywords to construct particular queries for sensors, signals, and image informatics. We only considered papers that have been published in journals providing at least three articles in the query response. Section editors then independently reviewed the titles and abstracts of preselected papers assessed on a three-point Likert scale. Papers were rated from 1 (do not include) to 3 (should be included) for each topical area (sensors, signals, and imaging informatics) and those with an average score of 2 or above were subsequently read and assessed again by two of the three co-editors. Finally, the top 14 papers with the highest combined scores were considered based on consensus. Results: The search for papers was executed in January 2021. After removing duplicates and conference proceedings, the query returned a set of 101, 193, and 529 papers for sensors, signals, and imaging informatics, respectively. We filtered out journals that had less than three papers in the query results, reducing the number of papers to 41, 117, and 333, respectively. From these, the co-editors identified 22 candidate papers with more than 2 Likert points on average, from which 14 candidate best papers were nominated after intensive discussion. At least five external reviewers then rated the remaining papers. The four finalist papers were found using the composite rating of all external reviewers. These best papers were approved by consensus of the International Medical Informatics Association (IMIA) Yearbook editorial board. Conclusions. Sensors, signals, and imaging informatics is a dynamic field of intense research. The four best papers represent advanced approaches for combining, processing, modeling, and analyzing heterogeneous sensor and imaging data. The selected papers demonstrate the combination and fusion of multiple sensors and sensor networks using electrocardiogram (ECG), electroencephalogram (EEG), or photoplethysmogram (PPG) with advanced data processing, deep and machine learning techniques, and present image processing modalities beyond state-of-the-art that significantly support and further improve medical decision making.
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- 2021
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50. A novel network-based approach for discovering dynamic metabolic biomarkers in cardiovascular disease.
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Christian Baumgartner, Verena Spath-Blass, Verena Niederkofler, Katharina Bergmoser, Sonja Langthaler, Alexander Lassnig, Theresa Rienmüller, Daniela Baumgartner, Aarti Asnani, and Robert E Gerszten
- Subjects
Medicine ,Science - Abstract
Metabolic biomarkers may play an important role in the diagnosis, prognostication and assessment of response to pharmacological therapy in complex diseases. The process of discovering new metabolic biomarkers is a non-trivial task which involves a number of bioanalytical processing steps coupled with a computational approach for the search, prioritization and verification of new biomarker candidates. Kinetic analysis provides an additional dimension of complexity in time-series data, allowing for a more precise interpretation of biomarker dynamics in terms of molecular interaction and pathway modulation. A novel network-based computational strategy for the discovery of putative dynamic biomarker candidates is presented, enabling the identification and verification of unexpected metabolic signatures in complex diseases such as myocardial infarction. The novelty of the proposed method lies in combining metabolic time-series data into a superimposed graph representation, highlighting the strength of the underlying kinetic interaction of preselected analytes. Using this approach, we were able to confirm known metabolic signatures and also identify new candidates such as carnosine and glycocholic acid, and pathways that have been previously associated with cardiovascular or related diseases. This computational strategy may serve as a complementary tool for the discovery of dynamic metabolic or proteomic biomarkers in the field of clinical medicine.
- Published
- 2018
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