28 results on '"Cui, Yue"'
Search Results
2. Individual brain parcellation: Review of methods, validations and applications
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Li, Chengyi, Yu, Shan, and Cui, Yue
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Quantitative Biology - Neurons and Cognition ,Computer Science - Artificial Intelligence - Abstract
Individual brains vary greatly in morphology, connectivity and organization. The applicability of group-level parcellations is limited by the rapid development of precision medicine today because they do not take into account the variation of parcels at the individual level. Accurate mapping of brain functional regions at the individual level is pivotal for a comprehensive understanding of the variations in brain function and behaviors, early and precise identification of brain abnormalities, as well as personalized treatments for neuropsychiatric disorders. With the development of neuroimaging and machine learning techniques, studies on individual brain parcellation are booming. In this paper, we offer an overview of recent advances in the methodologies of individual brain parcellation, including optimization- and learning-based methods. Comprehensive evaluation metrics to validate individual brain mapping have been introduced. We also review the studies of how individual brain mapping promotes neuroscience research and clinical medicine. Finally, we summarize the major challenges and important future directions of individualized brain parcellation. Collectively, we intend to offer a thorough overview of individual brain parcellation methods, validations, and applications, along with highlighting the current challenges that call for an urgent demand for integrated platforms that integrate datasets, methods, and validations., Comment: 15 pages, 2 figures
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- 2024
3. Nanodiamond-based spatial-temporal deformation sensing for cell mechanics
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Cui, Yue, Leong, Weng-Hang, Zhu, Guoli, Liu, Ren-Bao, and Li, Quan
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Physics - Biological Physics ,Quantum Physics - Abstract
Precise assessment of the mechanical properties of soft biological systems at the nanoscale is crucial for understanding physiology, pathology, and developing relevant drugs. Conventional atomic force microscopy (AFM)-based indentation methods suffer from uncertainties in local tip-sample interactions and model choice. This can be overcome by adopting spatially resolved nonlocal deformation sensing for mechanical analysis. However, the technique is currently limited to lifeless/static systems, due to the inadequate spatial or temporal resolution, or difficulties in differentiating the indentation-induced deformation from that associated with live activities and other external perturbations. Here, we develop an innovative dynamic nonlocal deformation sensing approach allowing both spatially and temporally resolved mechanical analysis, which achieves a tens of microsecond time-lag precision, a nanometer vertical deformation precision, and a sub-hundred nanometer lateral spatial resolution. Using oscillatory nanoindentation and spectroscopic analysis, the method can separate the indentation-caused signal from random noise, enabling live cell measurement. Using this method, we discover a distance-dependent phase of surface deformation during indentation, leading to the disclosure of surface tension effects (capillarity) in the mechanical response of live cells upon AFM indentation. A viscoelastic model with surface tension is used to enable simultaneous quantification of the viscoelasticity and capillarity of cell. We show that neglecting surface tension, as in conventional AFM methods, would underestimate the liquid-like characteristics and overestimate the apparent viscoelastic modulus of cells. The study lays down a foundation for understanding a broad range of elastocapillarity-related interfacial mechanics and mechanobiological processes in live cells., Comment: 30 pages (4 figures) + 25 pages (20 figures)
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- 2024
4. A Survey on Contribution Evaluation in Vertical Federated Learning
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Cui, Yue, Huang, Chung-ju, Zhang, Yuzhu, Wang, Leye, Fan, Lixin, Zhou, Xiaofang, and Yang, Qiang
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Computer Science - Machine Learning ,Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
Vertical Federated Learning (VFL) has emerged as a critical approach in machine learning to address privacy concerns associated with centralized data storage and processing. VFL facilitates collaboration among multiple entities with distinct feature sets on the same user population, enabling the joint training of predictive models without direct data sharing. A key aspect of VFL is the fair and accurate evaluation of each entity's contribution to the learning process. This is crucial for maintaining trust among participating entities, ensuring equitable resource sharing, and fostering a sustainable collaboration framework. This paper provides a thorough review of contribution evaluation in VFL. We categorize the vast array of contribution evaluation techniques along the VFL lifecycle, granularity of evaluation, privacy considerations, and core computational methods. We also explore various tasks in VFL that involving contribution evaluation and analyze their required evaluation properties and relation to the VFL lifecycle phases. Finally, we present a vision for the future challenges of contribution evaluation in VFL. By providing a structured analysis of the current landscape and potential advancements, this paper aims to guide researchers and practitioners in the design and implementation of more effective, efficient, and privacy-centric VFL solutions. Relevant literature and open-source resources have been compiled and are being continuously updated at the GitHub repository: \url{https://github.com/cuiyuebing/VFL_CE}.
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- 2024
5. Unifying Lane-Level Traffic Prediction from a Graph Structural Perspective: Benchmark and Baseline
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Li, Shuhao, Cui, Yue, Xu, Jingyi, Li, Libin, Meng, Lingkai, Yang, Weidong, Zhang, Fan, and Zhou, Xiaofang
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence - Abstract
Traffic prediction has long been a focal and pivotal area in research, witnessing both significant strides from city-level to road-level predictions in recent years. With the advancement of Vehicle-to-Everything (V2X) technologies, autonomous driving, and large-scale models in the traffic domain, lane-level traffic prediction has emerged as an indispensable direction. However, further progress in this field is hindered by the absence of comprehensive and unified evaluation standards, coupled with limited public availability of data and code. This paper extensively analyzes and categorizes existing research in lane-level traffic prediction, establishes a unified spatial topology structure and prediction tasks, and introduces a simple baseline model, GraphMLP, based on graph structure and MLP networks. We have replicated codes not publicly available in existing studies and, based on this, thoroughly and fairly assessed various models in terms of effectiveness, efficiency, and applicability, providing insights for practical applications. Additionally, we have released three new datasets and corresponding codes to accelerate progress in this field, all of which can be found on https://github.com/ShuhaoLii/TITS24LaneLevel-Traffic-Benchmark.
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- 2024
6. A Bargaining-based Approach for Feature Trading in Vertical Federated Learning
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Cui, Yue, Yao, Liuyi, Li, Zitao, Li, Yaliang, Ding, Bolin, and Zhou, Xiaofang
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Multiagent Systems - Abstract
Vertical Federated Learning (VFL) has emerged as a popular machine learning paradigm, enabling model training across the data and the task parties with different features about the same user set while preserving data privacy. In production environment, VFL usually involves one task party and one data party. Fair and economically efficient feature trading is crucial to the commercialization of VFL, where the task party is considered as the data consumer who buys the data party's features. However, current VFL feature trading practices often price the data party's data as a whole and assume transactions occur prior to the performing VFL. Neglecting the performance gains resulting from traded features may lead to underpayment and overpayment issues. In this study, we propose a bargaining-based feature trading approach in VFL to encourage economically efficient transactions. Our model incorporates performance gain-based pricing, taking into account the revenue-based optimization objectives of both parties. We analyze the proposed bargaining model under perfect and imperfect performance information settings, proving the existence of an equilibrium that optimizes the parties' objectives. Moreover, we develop performance gain estimation-based bargaining strategies for imperfect performance information scenarios and discuss potential security issues and solutions. Experiments on three real-world datasets demonstrate the effectiveness of the proposed bargaining model.
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- 2024
7. An Auction-based Marketplace for Model Trading in Federated Learning
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Cui, Yue, Yao, Liuyi, Li, Yaliang, Chen, Ziqian, Ding, Bolin, and Zhou, Xiaofang
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Computer Science and Game Theory - Abstract
Federated learning (FL) is increasingly recognized for its efficacy in training models using locally distributed data. However, the proper valuation of shared data in this collaborative process remains insufficiently addressed. In this work, we frame FL as a marketplace of models, where clients act as both buyers and sellers, engaging in model trading. This FL market allows clients to gain monetary reward by selling their own models and improve local model performance through the purchase of others' models. We propose an auction-based solution to ensure proper pricing based on performance gain. Incentive mechanisms are designed to encourage clients to truthfully reveal their model valuations. Furthermore, we introduce a reinforcement learning (RL) framework for marketing operations, aiming to achieve maximum trading volumes under the dynamic and evolving market status. Experimental results on four datasets demonstrate that the proposed FL market can achieve high trading revenue and fair downstream task accuracy.
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- 2024
8. Technical Report: On the Convergence of Gossip Learning in the Presence of Node Inaccessibility
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Liu, Tian, Cui, Yue, Hu, Xueyang, Xu, Yecheng, and Liu, Bo
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence - Abstract
Gossip learning (GL), as a decentralized alternative to federated learning (FL), is more suitable for resource-constrained wireless networks, such as Flying Ad-Hoc Networks (FANETs) that are formed by unmanned aerial vehicles (UAVs). GL can significantly enhance the efficiency and extend the battery life of UAV networks. Despite the advantages, the performance of GL is strongly affected by data distribution, communication speed, and network connectivity. However, how these factors influence the GL convergence is still unclear. Existing work studied the convergence of GL based on a virtual quantity for the sake of convenience, which failed to reflect the real state of the network when some nodes are inaccessible. In this paper, we formulate and investigate the impact of inaccessible nodes to GL under a dynamic network topology. We first decompose the weight divergence by whether the node is accessible or not. Then, we investigate the GL convergence under the dynamic of node accessibility and theoretically provide how the number of inaccessible nodes, data non-i.i.d.-ness, and duration of inaccessibility affect the convergence. Extensive experiments are carried out in practical settings to comprehensively verify the correctness of our theoretical findings.
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- 2024
9. Benchmarking the CoW with the TopCoW Challenge: Topology-Aware Anatomical Segmentation of the Circle of Willis for CTA and MRA
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Yang, Kaiyuan, Musio, Fabio, Ma, Yihui, Juchler, Norman, Paetzold, Johannes C., Al-Maskari, Rami, Höher, Luciano, Li, Hongwei Bran, Hamamci, Ibrahim Ethem, Sekuboyina, Anjany, Shit, Suprosanna, Huang, Houjing, Prabhakar, Chinmay, de la Rosa, Ezequiel, Waldmannstetter, Diana, Kofler, Florian, Navarro, Fernando, Menten, Martin, Ezhov, Ivan, Rueckert, Daniel, Vos, Iris, Ruigrok, Ynte, Velthuis, Birgitta, Kuijf, Hugo, Hämmerli, Julien, Wurster, Catherine, Bijlenga, Philippe, Westphal, Laura, Bisschop, Jeroen, Colombo, Elisa, Baazaoui, Hakim, Makmur, Andrew, Hallinan, James, Wiestler, Bene, Kirschke, Jan S., Wiest, Roland, Montagnon, Emmanuel, Letourneau-Guillon, Laurent, Galdran, Adrian, Galati, Francesco, Falcetta, Daniele, Zuluaga, Maria A., Lin, Chaolong, Zhao, Haoran, Zhang, Zehan, Ra, Sinyoung, Hwang, Jongyun, Park, Hyunjin, Chen, Junqiang, Wodzinski, Marek, Müller, Henning, Shi, Pengcheng, Liu, Wei, Ma, Ting, Yalçin, Cansu, Hamadache, Rachika E., Salvi, Joaquim, Llado, Xavier, Estrada, Uma Maria Lal-Trehan, Abramova, Valeriia, Giancardo, Luca, Oliver, Arnau, Liu, Jialu, Huang, Haibin, Cui, Yue, Lin, Zehang, Liu, Yusheng, Zhu, Shunzhi, Patel, Tatsat R., Tutino, Vincent M., Orouskhani, Maysam, Wang, Huayu, Mossa-Basha, Mahmud, Zhu, Chengcheng, Rokuss, Maximilian R., Kirchhoff, Yannick, Disch, Nico, Holzschuh, Julius, Isensee, Fabian, Maier-Hein, Klaus, Sato, Yuki, Hirsch, Sven, Wegener, Susanne, and Menze, Bjoern
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning ,Quantitative Biology - Quantitative Methods ,Quantitative Biology - Tissues and Organs - Abstract
The Circle of Willis (CoW) is an important network of arteries connecting major circulations of the brain. Its vascular architecture is believed to affect the risk, severity, and clinical outcome of serious neuro-vascular diseases. However, characterizing the highly variable CoW anatomy is still a manual and time-consuming expert task. The CoW is usually imaged by two angiographic imaging modalities, magnetic resonance angiography (MRA) and computed tomography angiography (CTA), but there exist limited public datasets with annotations on CoW anatomy, especially for CTA. Therefore we organized the TopCoW Challenge in 2023 with the release of an annotated CoW dataset. The TopCoW dataset was the first public dataset with voxel-level annotations for thirteen possible CoW vessel components, enabled by virtual-reality (VR) technology. It was also the first large dataset with paired MRA and CTA from the same patients. TopCoW challenge formalized the CoW characterization problem as a multiclass anatomical segmentation task with an emphasis on topological metrics. We invited submissions worldwide for the CoW segmentation task, which attracted over 140 registered participants from four continents. The top performing teams managed to segment many CoW components to Dice scores around 90%, but with lower scores for communicating arteries and rare variants. There were also topological mistakes for predictions with high Dice scores. Additional topological analysis revealed further areas for improvement in detecting certain CoW components and matching CoW variant topology accurately. TopCoW represented a first attempt at benchmarking the CoW anatomical segmentation task for MRA and CTA, both morphologically and topologically., Comment: 24 pages, 11 figures, 9 tables. Summary Paper for the MICCAI TopCoW 2023 Challenge
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- 2023
10. Machine-learning recovery of foreground wedge-removed 21-cm light cones for high-$z$ galaxy mapping
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Kennedy, Jacob, Carr, Jonathan Colaço, Gagnon-Hartman, Samuel, Liu, Adrian, Mirocha, Jordan, and Cui, Yue
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Astrophysics - Cosmology and Nongalactic Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
Upcoming experiments will map the spatial distribution of the 21-cm signal over three-dimensional volumes of space during the Epoch of Reionization (EoR). Several methods have been proposed to mitigate the issue of astrophysical foreground contamination in tomographic images of the 21-cm signal, one of which involves the excision of a wedge-shaped region in cylindrical Fourier space. While this removes the $k$-modes most readily contaminated by foregrounds, the concurrent removal of cosmological information located within the wedge considerably distorts the structure of 21-cm images. In this study, we build upon a U-Net based deep learning algorithm to reconstruct foreground wedge-removed maps of the 21-cm signal, newly incorporating light-cone effects. Adopting the Square Kilometre Array (SKA) as our fiducial instrument, we highlight that our U-Net recovery framework retains a reasonable level of reliability even in the face of instrumental limitations and noise. We subsequently evaluate the efficacy of recovered maps in guiding high-redshift galaxy searches and providing context to existing galaxy catalogues. This will allow for studies of how the high-redshift galaxy luminosity function varies across environments, and ultimately refine our understanding of the connection between the ionization state of the intergalactic medium (IGM) and galaxies during the EoR., Comment: v2: replaced with accepted MNRAS version (extra clarifying remarks and some demonstration of out-of-distribution performance). Results and conclusions unchanged
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- 2023
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11. Magnetic-field-induced splitting of Rydberg Electromagnetically Induced Transparency (EIT) and Autler-Townes (AT) spectra in $^{87}$Rb vapor cell
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Li, Xinheng, Cui, Yue, Hao, Jianhai, Zhou, Fei, Jia, Fengdong, Zhang, Jian, Xie, Feng, and Zhong, Zhiping
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Physics - Atomic Physics - Abstract
We theoretically and experimentally investigate the Rydberg electromagnetically induced transparency (EIT) and Autler-Townes (AT) splitting of $^{87}$Rb vapor under the combined influence of a magnetic field and a microwave field. In the presence of static magnetic field, the effect of the microwave field leads to the dressing and splitting of each $m_F$ state, resulting in multiple spectral peaks in the EIT-AT spectrum. A simplified analytical formula was developed to explain the EIT-AT spectrum in a static magnetic field, and the calculations are in excellent agreement with experimental results.We further studied the enhancement of the Rydberg atom microwave electric field sensor performance by making use of the splitting interval between the two maximum absolute $m_F$ states under static magnetic field. The traceable measurement limit of weak electric field by EIT-AT splitting method was extended by an order of magnitude, which is promising for precise microwave electric field measurement., Comment: 12 pages, 4 figures
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- 2023
12. Microwave electrometry with Rydberg atoms in a vapor cell using microwave amplitude modulation
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Hao, Jianhai, Jia, Fengdong, Cui, Yue, Wang, Yuhan, Zhou, Fei, Liu, Xiubin, Zhang, Jian, Xie, Feng, and Zhong, Zhiping
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Physics - Atomic Physics ,Quantum Physics - Abstract
We have theoretically and experimentally studied the dispersive signal of the Rydberg atomic electromagnetically induced transparency (EIT) - Autler-Townes (AT) splitting spectra obtained using amplitude modulation of the microwave (MW) field. In addition to the two zero-crossing points, the dispersion signal has two positive maxima with an interval defined as the shoulder interval of the dispersion signal $\Delta f_{\text{sho}}$. The relationship of MW field strength $E_{\text{MW}}$ and $\Delta f_{\text{sho}}$ are studied at the MW frequencies of 31.6 GHz, 22.1 GHz, and 9.2 GHz respectively. The results show that $\Delta f_{\text{sho}}$ can be used to character the much weaker $E_{\text{MW}}$ than the interval of two zero-crossing points $\Delta f_{\text{zeros}}$ and the traditional EIT-AT splitting interval $\Delta f_{\text{m}}$, the minimum $E_{\text{MW}}$ measured by $\Delta f_{\text{sho}}$ is about 30 times smaller than that by $\Delta f_{\text{m}}$. As an example, the minimum $E_{\text{MW}}$ at 9.2 GHz that can be characterized by $\Delta f_{\text{sho}}$ is 0.056 mV/cm, which is the minimum value characterized by frequency interval using vapour cell without adding any auxiliary fields. The proposed method can improve the weak limit and sensitivity of $E_{\text{MW}}$ measured by spectral frequency interval, which is important in the direct measurement of weak $E_{\text{MW}}$.
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- 2023
13. RecUP-FL: Reconciling Utility and Privacy in Federated Learning via User-configurable Privacy Defense
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Cui, Yue, Meerza, Syed Irfan Ali, Li, Zhuohang, Liu, Luyang, Zhang, Jiaxin, and Liu, Jian
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Computer Science - Machine Learning ,Computer Science - Cryptography and Security - Abstract
Federated learning (FL) provides a variety of privacy advantages by allowing clients to collaboratively train a model without sharing their private data. However, recent studies have shown that private information can still be leaked through shared gradients. To further minimize the risk of privacy leakage, existing defenses usually require clients to locally modify their gradients (e.g., differential privacy) prior to sharing with the server. While these approaches are effective in certain cases, they regard the entire data as a single entity to protect, which usually comes at a large cost in model utility. In this paper, we seek to reconcile utility and privacy in FL by proposing a user-configurable privacy defense, RecUP-FL, that can better focus on the user-specified sensitive attributes while obtaining significant improvements in utility over traditional defenses. Moreover, we observe that existing inference attacks often rely on a machine learning model to extract the private information (e.g., attributes). We thus formulate such a privacy defense as an adversarial learning problem, where RecUP-FL generates slight perturbations that can be added to the gradients before sharing to fool adversary models. To improve the transferability to un-queryable black-box adversary models, inspired by the idea of meta-learning, RecUP-FL forms a model zoo containing a set of substitute models and iteratively alternates between simulations of the white-box and the black-box adversarial attack scenarios to generate perturbations. Extensive experiments on four datasets under various adversarial settings (both attribute inference attack and data reconstruction attack) show that RecUP-FL can meet user-specified privacy constraints over the sensitive attributes while significantly improving the model utility compared with state-of-the-art privacy defenses.
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- 2023
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14. On eliminating blocking interference of RFID unauthorized reader detection system
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Sun, Degang, Cui, Yue, Wang, Siye, and Zhang, Yanfang
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Computer Science - Cryptography and Security - Abstract
RFID as an important component technology of IoT faces important security risks while being rapidly applied, among which the discovery of unauthorized readers in space is crucial. There are some researches proposed the unauthorized reader detection algorithm based on commercial off the shell(COTS) devices, but these detection algorithms are often easily affected by moving objects blocking interference in space, causing false alarms. We propose a new method of eliminating moving object interference, which can reduce the system false alarm rate to less than 7.9% by experimental testing, Comment: 4 pages,7 figures
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- 2022
15. New metal-plastic hybrid additive manufacturing strategy: Fabrication of arbitrary metal-patterns on external and even internal surfaces of 3D plastic structures
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Song, Kewei, Cui, Yue, Tao, Tiannan, Meng, Xiangyi, Sone, Michinari, Yoshino, Masahiro, Umezu, Shinjiro, and Sato, Hirotaka
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Computer Science - Robotics ,Electrical Engineering and Systems Science - Systems and Control ,Physics - Applied Physics ,Physics - Chemical Physics - Abstract
Constructing precise micro-nano metal patterns on complex three-dimensional (3D) plastic parts allows the fabrication of functional devices for advanced applications. However, this patterning is currently expensive and requires complex processes with long manufacturing lead time. The present work demonstrates a process for the fabrication of micro-nano 3D metal-plastic composite structures with arbitrarily complex shapes. In this approach, a light-cured resin is modified to prepare an active precursor capable of allowing subsequent electroless plating (ELP). A multi-material digital light processing 3D printer was newly developed to enable the fabrication of parts containing regions made of either standard resin or active precursor resin nested within each other. Selective 3D ELP processing of such parts provided various metal-plastic composite parts having complicated hollow micro-nano structures with specific topological relationships on a size scale as small as 40 um. Using this technique, 3D metal topologies that cannot be manufactured by traditional methods are possible, and metal patterns can be produced inside plastic parts as a means of further miniaturizing electronic devices. The proposed method can also generate metal coatings exhibiting improved adhesion of metal to plastic substrate. Based on this technique, several sensors composed of different functional nonmetallic materials and specific metal patterns were designed and fabricated. The present results demonstrate the viability of the proposed method and suggest potential applications in the fields of smart 3D micro-nano electronics, 3D wearable devices, micro/nano-sensors, and health care.
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- 2021
16. Nonparametric Methods for Complex Multivariate Data: Asymptotics and Small Sample Approximations
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Cui, Yue and Harrar, Solomon W.
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Statistics - Methodology ,Mathematics - Statistics Theory - Abstract
Quality of Life (QOL) outcomes are important in the management of chronic illnesses. In studies of efficacies of treatments or intervention modalities, QOL scales multi-dimensional constructs are routinely used as primary endpoints. The standard data analysis strategy computes composite (average) overall and domain scores, and conducts a mixed-model analysis for evaluating efficacy or monitoring medical conditions as if these scores were in continuous metric scale. However, assumptions of parametric models like continuity and homoscedastivity can be violated in many cases. Furthermore, it is even more challenging when there are missing values on some of the variables. In this paper, we propose a purely nonparametric approach in the sense that meaningful and, yet, nonparametric effect size measures are developed. We propose estimator for the effect size and develop the asymptotic properties. Our methods are shown to be particularly effective in the presence of some form of clustering and/or missing values. Inferential procedures are derived from the asymptotic theory. The Asthma Randomized Trial of Indoor Wood Smoke data will be used to illustrate the applications of the proposed methods. The data was collected from a three-arm randomized trial which evaluated interventions targeting biomass smoke particulate matter from older model residential wood stoves in homes that have children with asthma.
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- 2021
17. Measurement of single-cell elasticity by nanodiamond-sensing of non-local deformation
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Cui, Yue, Leong, Weng-Hang, Liu, Chu-Feng, Xia, Kangwei, Feng, Xi, Gergely, Csilla, Liu, Ren-Bao, and Li, Quan
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Physics - Biological Physics ,Quantum Physics - Abstract
Nano-indentation based on, e.g., atomic force microscopy (AFM), can measure single cell elasticity with high spatial resolution and sensitivity, but relating the data to cell mechanical properties depends on modeling that requires knowledge about the local contact between the indentation tip and the material, which is unclear in most cases. Here we use the orientation sensing by nitrogen-vacancy centers in nanodiamonds to chart the non-local deformation of fixed HeLa cells induced by AFM indentation, providing data for studying cell mechanics without requiring detailed knowledge about the local contact. The competition between the elasticity and capillarity on the cells is observed. We show that the apparent elastic moduli of the cells would have been overestimated if the capillarity is not considered (as in most previous studies using local depth-loading data). We also find reduction of both elastic moduli and surface tensions due to depolymerization of the actin cytoskeleton structure. This work demonstrates that, under shallow indentation, the nanodiamond sensing of non-local deformation with nanometer precision is particularly suitable for studying mechanics of cells., Comment: 28 pages (4 figures) + 12 pages (10 figures)
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- 2021
18. Nonparametric Method for Clustered Data in Pre-Post Factorial Design
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Harrar, Solomon W. and Cui, Yue
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Statistics - Methodology - Abstract
In repeated measures factorial designs involving clustered units, parametric methods such as linear mixed effects models are used to handle within subject correlations. However, assumptions of these parametric models such as continuity and normality are usually hard to come by in many cases. The homoscedasticity assumption is rather hard to verify in practice. Furthermore, these assumptions may not even be realistic when data are measured in a non-metric scale as commonly happens, for example, in Quality of Life outcomes. In this article, nonparametric effect-size measures for clustered data in factorial designs with pre-post measurements will be introduced. The effect-size measures provide intuitively-interpretable and informative probabilistic comparisons of treatment and time effects. The dependence among observations within a cluster can be arbitrary across treatment groups. The effect-size estimators along with their asymptotic properties for computing confidence intervals and performing hypothesis tests will be discussed. ANOVA-type statistics with $\chi^2$ approximation that retain some of the optimal asymptotic behaviors in small samples are investigated. Within each treatment group, we allow some clusters to involve observations measured on both pre and post intervention periods (referred to as complete clusters), while others to contain observations from either pre or post intervention period only (referred to as incomplete clusters). Our methods are shown to be, particularly effective in the presence of multiple forms of clustering. The developed nonparametric methods are illustrated with data from a three-arm Randomized Trial of Indoor Wood Smoke reduction. The study considered two active treatments to improve asthma symptoms of kids living in homes that use wood stove for heating.
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- 2021
19. Historical Inertia: A Neglected but Powerful Baseline for Long Sequence Time-series Forecasting
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Cui, Yue, Xie, Jiandong, and Zheng, Kai
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Computer Science - Machine Learning - Abstract
Long sequence time-series forecasting (LSTF) has become increasingly popular for its wide range of applications. Though superior models have been proposed to enhance the prediction effectiveness and efficiency, it is reckless to neglect or underestimate one of the most natural and basic temporal properties of time-series. In this paper, we introduce a new baseline for LSTF, the historical inertia (HI), which refers to the most recent historical data-points in the input time series. We experimentally evaluate the power of historical inertia on four public real-word datasets. The results demonstrate that up to 82\% relative improvement over state-of-the-art works can be achieved even by adopting HI directly as output., Comment: 7 pages, 1 figure, 5 tables
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- 2021
20. Recovering the Wedge Modes Lost to 21-cm Foregrounds
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Gagnon-Hartman, Samuel, Cui, Yue, Kennedy, Jacob, Liu, Adrian, and Ravanbakhsh, Siamak
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Astrophysics - Cosmology and Nongalactic Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
One of the critical challenges facing imaging studies of the 21-cm signal at the Epoch of Reionization (EoR) is the separation of astrophysical foreground contamination. These foregrounds are known to lie in a wedge-shaped region of $(k_{\perp},k_{\parallel})$ Fourier space. Removing these Fourier modes excises the foregrounds at grave expense to image fidelity, since the cosmological information at these modes is also removed by the wedge filter. However, the 21-cm EoR signal is non-Gaussian, meaning that the lost wedge modes are correlated to the surviving modes by some covariance matrix. We have developed a machine learning-based method which exploits this information to identify ionized regions within a wedge-filtered image. Our method reliably identifies the largest ionized regions and can reconstruct their shape, size, and location within an image. We further demonstrate that our method remains viable when instrumental effects are accounted for, using the Hydrogen Epoch of Reionization Array and the Square Kilometre Array as fiducial instruments. The ability to recover spatial information from wedge-filtered images unlocks the potential for imaging studies using current- and next-generation instruments without relying on detailed models of the astrophysical foregrounds themselves., Comment: 15 pages, 15 figures, 2 tables. Appended erratum in v5 to describe necessary adjustment to reproduce performance in the face of overfitting, updated to match erratum accepted by MNRAS
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- 2021
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21. High-resolution imaging of Rydberg atoms in optical lattices using an aspheric-lens objective in vacuum
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Shen, Chuyang, Chen, Cheng, Wu, Xiao-Ling, Dong, Shen, Cui, Yue, You, Li, and Tey, Meng Khoon
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Condensed Matter - Quantum Gases ,Physics - Atomic Physics - Abstract
We present a high-resolution, simple and versatile system for imaging ultracold Rydberg atoms in optical lattices. The imaging objective is a single aspheric lens (with a working distance of 20.6 mm and a numerical aperture (NA) of 0.51) placed inside the vacuum chamber. Adopting a large-working-distance lens leaves room for electrodes and electrostatic shields to control electric fields around Rydberg atoms. With this setup, we achieve an Rayleigh resolution of 1.10 $\mu$m or $1.41\lambda$ ($\lambda=780$ nm), limited by the NA of the aspheric lens. For systems of highly excited Rydberg states with blockade radii greater than a few $\mu$m, the resolution achieved is sufficient for studying many physical processes of interest., Comment: 6 pages, 4 figures
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- 2020
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22. Broad Feshbach resonances in ultracold alkali-metal systems
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Cui, Yue, Deng, Min, You, Li, Gao, Bo, and Tey, Meng Khoon
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Condensed Matter - Quantum Gases ,Physics - Atomic Physics - Abstract
A comprehensive search for "broad" Feshbach resonances (FRs) in all possible combinations of stable alkali-metal atoms is carried out, using a multi-channel quantum-defect theory assisted by the analytic wave functions for a long-range van-der-Waals potential. A number of new "broad" $s$-, $p$- and $d$-wave FRs in the lowest-energy scattering channels, which are stable against two-body dipolar spin-flip loss, are predicted and characterized. Our results also show that "broad" FRs of $p$- or $d$-wave type that are free of two-body loss do not exist between fermionic alkali-metal atoms for magnetic field up to 1000\,G. These findings constitute helpful guidance on efforts towards experimental study of high-partial-wave coupling induced many-body physics., Comment: 14 pages, 1 figure
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- 2018
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23. Subdivisions of the posteromedial cortex in disorders of consciousness
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Cui, Yue, Song, Ming, Lipnicki, Darren M., Yang, Yi, Ye, Chuyang, Fan, Lingzhong, Sui, Jing, Jiang, Tianzi, and He, Jianghong
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Quantitative Biology - Neurons and Cognition - Abstract
Evidence suggests that disruptions of the posteromedial cortex (PMC) and posteromedial corticothalamic connectivity contribute to disorders of consciousness (DOCs). While most previous studies treated the PMC as a whole, this structure is functionally heterogeneous. The present study investigated whether particular subdivisions of the PMC are specifically associated with DOCs. Participants were DOC patients, 21 vegetative state/unresponsive wakefulness syndrome (VS/UWS), 12 minimally conscious state (MCS), and 29 healthy controls. Individual PMC and thalamus were divided into distinct subdivisions by their fiber tractograpy to each other and default mode regions, and white matter integrity and brain activity between/within subdivisions were assessed. The thalamus was represented mainly in the dorsal and posterior portions of the PMC, and the white matter tracts connecting these subdivisions to the thalamus had less integrity in VS/UWS patients than in MCS patients and healthy controls, as well as in patients who did not recover after 12 months than in patients who did. The structural substrates were validated by finding impaired functional fluctuations within this PMC subdivision. This study is the first to show that tracts from dorsal and posterior subdivisions of the PMC to the thalamus contribute to DOCs.
- Published
- 2018
24. Prognostication of chronic disorders of consciousness using brain functional networks and clinical characteristics
- Author
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Song, Ming, Yang, Yi, He, Jianghong, Yang, Zhengyi, Yu, Shan, Xie, Qiuyou, Xia, Xiaoyu, Dang, Yuanyuan, Zhang, Qiang, Wu, Xinhuai, Cui, Yue, Hou, Bing, Yu, Ronghao, Xu, Ruxiang, and Jiang, Tianzi
- Subjects
Quantitative Biology - Neurons and Cognition - Abstract
Disorders of consciousness are a heterogeneous mixture of different diseases or injuries. Although some indicators and models have been proposed for prognostication, any single method when used alone carries a high risk of false prediction. This study aimed to develop a multidomain prognostic model that combines resting state functional MRI with three clinical characteristics to predict one year outcomes at the single-subject level. The model discriminated between patients who would later recover consciousness and those who would not with an accuracy of around 90% on three datasets from two medical centers. It was also able to identify the prognostic importance of different predictors, including brain functions and clinical characteristics. To our knowledge, this is the first implementation reported of a multidomain prognostic model based on resting state functional MRI and clinical characteristics in chronic disorders of consciousness. We therefore suggest that this novel prognostic model is accurate, robust, and interpretable., Comment: Although some prognostic indicators and models have been proposed for disorders of consciousness, each single method when used alone carries risks of false prediction. Song et al. report that a model combining resting state functional MRI with clinical characteristics provided accurate, robust, and interpretable prognostications. 52 pages, 1 table, 7 figures
- Published
- 2018
25. Observation of 'broad' d-wave Feshbach resonances with a triplet structure
- Author
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Cui, Yue, Shen, Chuyang, Deng, Min, Dong, Shen, Chen, Cheng, Lü, Rong, Gao, Bo, Tey, Meng Khoon, and You, Li
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Condensed Matter - Quantum Gases - Abstract
High partial-wave ($l\ge2$) Feshbach resonance (FR) in an ultracold mixture of $^{85}$Rb-$^{87}$Rb atoms is investigated experimentally aided by a partial-wave insensitive analytic multichannel quantum-defect theory (MQDT). Two "broad" resonances from coupling between d-waves in both the open and closed channels are observed and characterized. One of them shows a fully resolved triplet structure with splitting ratio well explained by the perturbation to the closed channel due to interatomic spin-spin interaction. These tunable "broad" d-wave resonances, especially the one in the lowest-energy open channel, could find important applications in simulating d-wave coupling dominated many-body systems. In addition, we find that there is generally a time and temperature requirement, associated with tunneling through the angular momentum barrier, to establish and observe resonant coupling in nonzero partial waves., Comment: 5 pages, 3 figures
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- 2017
- Full Text
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26. Observation of broad p-wave Feshbach resonances in ultracold $^{85}$Rb-$^{87}$Rb mixtures
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Dong, Shen, Cui, Yue, Shen, Chuyang, Wu, Yewei, Tey, Meng Khoon, You, Li, and Gao, Bo
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Condensed Matter - Quantum Gases ,Physics - Atomic Physics - Abstract
We observe new Feshbach resonances in ultracold mixtures of $^{85}$Rb and $^{87}$Rb atoms in the $^{85}$Rb$|2, +2\rangle$+$^{87}$Rb$|1, +1\rangle$ and $^{85}$Rb$|2, -2\rangle$+$^{87}$Rb$|1, -1\rangle$ scattering channels. The positions and properties of the resonances are predicted and characterized using the semi-analytic multichannel quantum-defect theory by Gao. Of particular interest, a number of broad entrance-channel dominated p-wave resonances are identified, implicating exciting opportunities for studying a variety of p-wave interaction dominated physics., Comment: 7 pages, 6 figures
- Published
- 2016
- Full Text
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27. Detecting and Understanding the Impact of Cognitive and Interpersonal Conflict in Computer Supported Collaborative Learning Environments
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International Working Group on Educational Data Mining, Prata, David Nadler, Baker, Ryan S. J. d., Costa, Evandro d. B., Rose, Carolyn P., Cui, Yue, and de Carvalho, Adriana M. J. B.
- Abstract
This paper presents a model which can automatically detect a variety of student speech acts as students collaborate within a computer supported collaborative learning environment. In addition, an analysis is presented which gives substantial insight as to how students' learning is associated with students' speech acts, knowledge that will significantly influence how this model is utilized by running learning software. Within Piagetian theory, the cognitive conflict of ideas between students is seen as beneficial for learning. Which sorts of interpersonal behaviors lead to most effective learning, however, is open to debate, with some researchers arguing that cooperation is most effective and others arguing that interpersonal conflict is a natural part of collaborative learning. We find that, in fact, interpersonal conflict is associated with positive learning, a finding that must be taken into account, in designing interventions that rely upon detectors of students' speech acts in CSCL environments. (Contains 1 figure and 3 tables.) [For the complete proceedings, "Proceedings of the International Conference on Educational Data Mining (EDM) (2nd, Cordoba, Spain, July 1-3, 2009)," see ED539041.]
- Published
- 2009
28. In-medium properties of kaons in a chiral approach
- Author
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Cui, Yue-Lei and Sun, Bao-Xi
- Subjects
Nuclear Theory - Abstract
The first order self-energy corrections of the kaon in the symmetric nuclear matter are calculated from kaon-nucleon scattering matrix elements using a chiral Lagrangian within the framework of relativistic mean field approximation. It shows that the effective mass and the potential of K^+ meson are identical with those of K^- meson in the nuclear matter, respectively. The effective mass of the kaon in the nuclear matter decreases with the nuclear density increasing, and is not relevant to the kaon-nucleon Sigma term. The kaon-nucleus potential is positive and increases with the nuclear density. Moreover, the influence of the resonance $\Lambda(1405)$ on the $K^-$-nucleus potential due to the re-scattering term is discussed. Our results indicate the K^- meson could not be bound in the nuclei even if the contribution of $\Lambda(1405)$ resonance is considered., Comment: 8 pages, 3 figures, The contribution of Lambda(1405) resonance in the rescattering process to the K-nucleus potential is discussed in the revised version
- Published
- 2007
- Full Text
- View/download PDF
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