1,572 results
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2. Portable and Visual Detection of Cytochrome c with Graphene Quantum Dots–Filter Paper Composite
- Author
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Liangtong Li, Yongjian Jiang, Ni Wang, Yusheng Feng, Binbin Chen, and Jian Wang
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graphene quantum dots ,cytochrome c ,apoptosis ,inner filter effect ,portable ,filter paper ,Biochemistry ,QD415-436 - Abstract
As a significant biomarker during the apoptosis process, cytochrome c (Cyt c) is considered as a critical component in the inherent apoptotic pathway, but the simple and portable detection still remains challengeable. In this work, a portable and visual sensing platform for Cyt c was developed based upon the fluorescence quenching of graphene quantum dots (GQDs), which could be finished within a few seconds. Herein, the absorption spectrum of Cyt c matched the emission spectrum of GQDs well, which could cause the fluorescence quenching of GQDs via the inner filter effect (IFE) in the range of 1–50 μg/mL with the limit of detection as low as 0.1 μg/mL. Furthermore, the intracellular Cyt c was imaged to observe the apoptosis process of cancer cells induced by staurosporine. To achieve the portable and visual detection of Cyt c, GQDs were deposited on the filter paper to form the solid platform, which displayed a gradual fluorescence quenching when different concentrations of Cyt c were present. Compared to the conventional methods, the proposed assay is low-cost, fast, portable, and visual, which will be useful for the investigation of mitochondrial dysfunction and apoptotic cell death.
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- 2024
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3. Colorimetric and electrochemical dual-signal detection of uracil-DNA glycosylase using functionalized pure DNA hydrogel on paper-based analytical devices
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Wei Xue, Pan Jia, Yunping Wu, Pu Wang, Jiarong Shi, Yangyang Chang, and Meng Liu
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Pure DNA hydrogel ,Uracil-DNA glycosylase ,Dual-signal detection ,Rolling circle amplification ,Paper-based analytical device ,Agriculture (General) ,S1-972 ,Biochemistry ,QD415-436 ,Chemistry ,QD1-999 - Abstract
The development of simple and accurate detection of uracil-DNA glycosylase (UDG) is of great significance for early clinical diagnosis and biomedical research. Here, we on the first effort introduced the uracil bases into the rolling circle amplification (RCA) reaction to produce the functionalized pure DNA hydrogel (PDH) for UDG detection. During RCA process, methylene blue (MB) molecules as the indicators were encapsulated into PDH. The addition of UDG can remove the uracil bases of PDH to generate abasic sites, which are further cleaved with the assistance of apurinic/apyrimidinic endonuclease (APE), thus resulting in the dissociation of PDH to release blue MB. By combining with the paper analytical devices as the signal readout platform, a colorimetric and electrochemical dual-signal biosensor was constructed for convenient and accurate detection of UDG. The proposed MB@PDH-based dual-signal sensing system exhibited good selectivity and high sensitivity with a detection limit of 6.4 × 10−4 U/mL (electrochemical method). It was also demonstrated that this sensing system showed excellent performance in UDG inhibitor screening, thus providing great potential in UDG-related disease diagnosis and drug discovery.
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- 2023
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4. Supramolecular systems based on chitosan and chemically functionalized nanocelluloses as protective and reinforcing fillers of paper structure
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Lorenzo Lisuzzo, Giuseppe Cavallaro, Giuseppe Lazzara, and Stefana Milioto
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Nanocellulose ,Chitosan ,Electrostatic Interactions ,ITC ,Paper consolidation ,Biochemistry ,QD415-436 - Abstract
Supramolecular systems based on chitosan and cellulose nanofibers (CNFs) with a different surface modification (TEMPO-oxidation and carboxymethylation) were investigated and utilized for the functional consolidation of paper. Prior to the paper consolidation, the interactions between chitosan and CNFs dispersed in aqueous solvent were studied. It was detected that the peculiar surface functionalization of nanocellulose is crucial to control the chitosan/CNFs electrostatic attractions and, consequently, the entropic/enthalpic contributions and the stoichiometry of the biopolymer adsorption onto the cellulose nanofibers. Dynamic Light Scattering and rheological experiments revealed that the presence of biopolymeric chains on the CNFs surface favors the entanglement and the aggregation between the nanofibers reinforcing their network. It was observed that chitosan and nanocellulose exhibit synergetic effects on the paper consolidation in terms of reinforcing action, surface hydrophobization and enhancement of the fire-resistance. In conclusion, this paper demonstrates that the electrostatic interactions between chitosan and functionalized nanocellulose drive the formation of hybrid fillers suitable for paper consolidation. Chitosan coated CNFs possess an improved capacity to penetrate the paper structure causing an enhancement of the mechanical resistance and surface hydrophobization. Moreover, chitosan/CNFs create a protective barrier for heat transfer that prevents the paper combustion.
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- 2023
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5. Origami Paper-Based Electrochemical Immunosensor with Carbon Nanohorns-Decorated Nanoporous Gold for Zearalenone Detection
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Anabel Laza, Sirley V. Pereira, Germán A. Messina, Martín A. Fernández-Baldo, Julio Raba, Matías D. Regiart, and Franco A. Bertolino
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paper-based ,electrochemical ,immunosensor ,carbon nanohorns ,nanoporous gold ,mycotoxin ,Biochemistry ,QD415-436 - Abstract
Nowadays, mycotoxin contamination in cereals and wastewater exposes a safety hazard to consumer health. This work describes the design of a simple, low-cost, and sensitive origami microfluidic paper-based device using electrochemical detection for zearalenone determination. The microfluidic immunosensor was designed on a paper platform by a wax printing process. The graphitized carbon working electrode modified with carbon nanohorns-decorated nanoporous gold showed a higher surface area, sensitivity, and adequate analytical performance. Electrodes were characterized by scanning electron microscopy, energy-dispersive spectroscopy, and cyclic voltammetry. The determination of zearalenone was carried out through a competitive immunoassay using specific antibodies immobilized by a covalent bond on the electrode surface. In the presence of HRP-labeled enzyme conjugate, substrate, and catechol, zearalenone was detected employing the developed immunosensor by applying −0.1 V to the working electrode vs silver as a pseudo-reference electrode. A calibration curve with a linear range between 10 and 1000 µg Kg−1 (R2 = 0.998) was obtained, and the limit of detection and quantification for the electrochemical immunosensor were 4.40 and 14.90 µg Kg−1, respectively. The coefficient of variation for intra- and inter-day assays was less than 5%. The selectivity and specificity of the sensor were evaluated, comparing the response against zearalenone metabolites and other mycotoxins that could affect the corn samples. Therefore, origami is a promising approach for paper-based electrochemical microfluidic sensors coupled to smartphones as a rapid and portable tool for in situ mycotoxins detection in real samples.
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- 2024
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6. Advancing Paper Industry Applications with Extruded Cationic Wheat Starch as an Environmentally Friendly Biopolymer
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Ahmed Tara
- Subjects
cationic wheat starch ,twin-screw reactive extrusion ,degree of substitution ,papermaking ,specific mechanical energy ,viscosity ,Biochemistry ,QD415-436 - Abstract
Within the domain of starch modification, the study delved into cationization of wheat starch through a laboratory-scale twin-screw extruder, exploring various processing conditions. Cationic starch, a crucial component for enhancing paper attributes like dry strength and printability, took center stage. The focus shifted towards integration into papermaking, investigating the transformative potential of reactive extrusion. By contrasting it with conventional dry-process methodology, innovative strides were unveiled. The study extended to pilot-scale extrusion, bridging the gap between laboratory experimentation and potential industrial implementation. Infused with scientific rigor, the investigation navigated the benefits brought about by reactive extrusion. Empirical insights highlighted a significant reduction in the intrinsic viscosity of extruded starch, decreasing from 170 mL·g−1 (native starch) to 100 mL·g−1 at a specific mechanical energy (SME) input of 800 kWh·t−1, demonstrating remarkable stability despite increased mechanical treatment. Moreover, beyond the critical threshold of 220 kWh·t−1, retention efficiency reached a stable plateau at 78%. The study revealed that utilizing a larger extruder slightly improved the mechanical properties of the paper, emphasizing the advantage of scaling up the production process and the consistency of results across different extruder sizes.
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- 2023
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7. Novel Electrochemical Sensor Based on MnO2 Nanowire Modified Carbon Paper Electrode for Sensitive Determination of Tetrabromobisphenol A
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Chunmao Zhu, Qi Wu, Fanshu Yuan, Jie Liu, Dongtian Wang, and Qianli Zhang
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tetrabromobisphenol A ,MnO2 ,carbon paper ,modified electrode ,Biochemistry ,QD415-436 - Abstract
In this paper, a MnO2 nanowire (MnO2-NW) modified carbon paper electrode (CP) was developed as a novel electrochemical sensor for the sensitive determination of tetrabromobisphenol A (TBBPA). The MnO2 nanowire was prepared by a hydrothermal synthesis method, and the morphology and structure of MnO2 were characterized using scanning electron microscopy, X-ray diffraction and X-ray photoelectron spectroscopy. The electrochemical performance of TBBPA on MnO2-NW/CP was investigated by cyclic voltammetry, and the result confirmed that MnO2-NW/CP exhibited excellent sensitivity for the determination of TBBPA due to the high specific surface area and good electrical conductivity of the nanowire-like MnO2. Moreover, the important electrochemical factors such as pH value, incubation time and modified material proportion were systematically studied to improve the determination sensitivity. The interferences from similar structure compounds on TBBPA have also been investigated. Under the optimal conditions, MnO2-NW/CP displayed a linear range of 70~500 nM for TBBPA with a detection limit of 3.1 nM. This was superior to some electrochemical methods in reference. The work presents a novel and simple method for the determination of TBBPA.
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- 2023
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8. Recent Advances and Perspectives Regarding Paper-Based Sensors for Salivary Biomarker Detection
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Cong Chen, Lulu Tian, Wen Li, Kun Wang, Qijing Yang, Jinying Lin, Tianshou Zhang, Biao Dong, and Lin Wang
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paper-based sensor ,saliva biomarker ,point of care ,Biochemistry ,QD415-436 - Abstract
Paper-based sensors overcome the drawbacks of conventional sensors in terms of their flexibility, portability, and stability compared to conventional sensors. Moreover, as a noninvasive bodily fluid, saliva contains various biomarkers related to physical status, which makes it perfectly matched with to use of paper-based sensors to manufacture a convenient and inexpensive disposable sensing device. This review focuses on the recent advances and progress in the design of paper-based salivary sensors and their applications. The first part mainly discusses various paper-based sensors and their advanced compositions, including dipstick assay, lateral flow assay, and microfluidic analytical device. Different detection methods in salivary biomarker detection are specially introduced in the secondary section, then their multiple potential applications and prospects are summarized. The sensor has excellent advantages for saliva detection, provides a reliable platform for point-of-care tests and telemedicine, and epically promotes the development of the medical Internet of Things.
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- 2023
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9. Highly Crystalline Oxidase-like MnOOH Nanowire-Incorporated Paper Dipstick for One-Step Colorimetric Detection of Dopamine
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Phan Ba Khanh Chau, Thinh Viet Dang, and Moon Il Kim
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paper dipstick ,MnOOH nanowires ,dopamine oxidase ,nanozyme ,colorimetric biosensors ,Biochemistry ,QD415-436 - Abstract
Developing a convenient detection method for dopamine holds a significant incentive due to its high clinical significance. Herein, we synthesize crystalline MnOOH nanowires (MNWs) via a simple solvothermal treatment of KMnO4 and demonstrate that they possess excellent oxidase-like activity owing to the presence of pure Mn3+ sites on the MNWs. Particularly, MNWs catalyze the rapid oxidation of dopamine into aminochromes, which show a vivid brown color. The dopamine oxidase-like activity of MNWs follows the typical Michaelis–Mentenkinetics with excellent storage stability. Based on the affirmative catalytic features, a paper dipstick incorporating MNWs in the detection zone is constructed for the one-step colorimetric detection of target dopamine. By immersing the dipstick into the sample solution for 30 min, the sample spontaneously moves to the detection zone due to capillary force, yielding a brown color proportional to the amount of dopamine, which is quantified from an image acquired using a smartphone. With the MNW-containing solution-based assay and MNW-incorporated paper dipstick, dopamine is successfully determined with high selectivity, sensitivity, and detection precision when using spiked human serum and pharmaceutical dopamine injection samples, respectively. Successful analytical values such as the dynamic linear ranges of 3–60 μM and 0.05–7 mM are achieved with the solution-based assay and paper dipstick, respectively, along with excellent detection accuracy (95–99%) and precision (1.0–3.1%). Hence, we developed a simple and efficient nanozyme-based paper dipstick biosensor for dopamine that can be used in point-of-care testing environments.
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- 2023
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10. Low-Cost, High-Sensitivity Paper-Based Bacteria Impedance Sensor Based on Vertical Flow Assay
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Yifan Long, Zhehong Ai, Longhan Zhang, Han Zhang, Jing Jiang, and Gang Logan Liu
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paper-based electrode ,bacterial detection ,portable sensor ,on-site detection ,Biochemistry ,QD415-436 - Abstract
This study proposes a low-cost, portable paper-fluidic vertical flow assay bacterium counter with high accuracy. We designed sensors with low fabrication costs based on e-beam evaporation and three-dimensional printing based on the impedance measurement principle. Interdigitated (IDT) electrodes were coated on the filter membrane by e-beam evaporation with a shadow mask. We could print wafer-scale frames with low melting temperature three-dimensional-printing materials for confining liquid bacterial samples within the IDT sensing region. This novel fabrication technique significantly reduced the chip’s cost to less than 1% of that of silicon-based chips. Two equivalent circuit models were proposed for different concentration ranges to analyze the principle of paper-based impedance bacterial sensors. We proposed an improved model based on the Randles model for low concentrations by considering the leaky double-layer capacitor effect and spherical diffusion from the nano-structural electrodes of the gold-coated filter membrane. The phenomenon in which charge transfer resistance, Rct, declines at high concentration ranges was found and explained by the pearl chain effect. The pearl effect could cause a false-negative at high concentrations. We modeled the pearl chain effect as an R and C, connected parallel to the low-concentration model. When users properly applied both models for analyses, this sensor could quantitatively measure cell concentrations from 400 to 400 M per milliliter with superior linearity.
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- 2023
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11. Paper-Based Loop Mediated Isothermal Amplification (LAMP) Platforms: Integrating the Versatility of Paper Microfluidics with Accuracy of Nucleic Acid Amplification Tests
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Debayan Das, Manaswini Masetty, and Aashish Priye
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LAMP ,RT-LAMP ,paper-based diagnostics ,point-of-care diagnostics ,Biochemistry ,QD415-436 - Abstract
Paper-based diagnostics offer a promising alternative to traditional diagnostic methods for point-of-care use due to their low cost, ease of use, portability, rapid results, versatility, and low environmental impact. While paper-based serology tests in the form of lateral flow assays can provide rapid test results for past pathogen exposure, they currently lack the accuracy and sensitivity offered by molecular diagnostic tests such as the polymerase chain reaction (PCR). Loop-mediated isothermal amplification (LAMP)—an isothermal nucleic acid amplification test (NAAT)—provides PCR-like performance while simultaneously reducing the instrumentation and assay complexity associated with PCR. In this review, we discuss a newly emerging class of paper-based LAMP platforms that integrates the versatility of paper microfluidics with the accuracy of NAATs. Since its first adoption in 2015, we have discussed all paper-based LAMP platforms in terms of the paper substrates, reagent incorporation techniques, paper platform design, heating hardware, detection methods, and sensitivity and specificity of paper-based LAMP assays. We conclude by identifying the current challenges and future prospects of paper-based NAATs.
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- 2023
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12. Iron Determination in Natural Waters Using a Synthesised 3-Hydroxy-4-Pyridione Ligand in a Newly Developed Microfluidic Paper-Based Device
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Juliana I. S. Aguiar, Susana O. Ribeiro, Andreia Leite, Maria Rangel, António O. S. S. Rangel, and Raquel B. R. Mesquita
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iron quantification sensor ,microfluidic paper-based analytical device ,3-hydroxy-4-pyridinone ligand ,natural waters ,in situ analysis ,Biochemistry ,QD415-436 - Abstract
This work describes the development of an iron sensor based on a microfluidic paper-based technique, to attain iron quantification in natural waters. A new water-soluble naphthalene-3-hydroxy-4-pyridione ligand was used as a colour reagent, as it formed an orange complex with iron. As a newly described ligand, several chemical and physical parameters, namely, the sample and reagent volumes and reagent concentrations, were studied related to the formation of the coloured complex. The microfluidic paper-based analytical device (μPAD) assembly, namely, the use of different types of filter paper and different numbers of layers, was developed to obtain the best performance. Under the optimal conditions, a linear correlation was obtained in the range of 0.25–2.00 mg/L of iron, with a minimum detectable value of 0.07 mg/L. The proposed μPAD method was validated by an analysis of the certified samples and by a comparison of the tested water samples with the inductively coupled plasma (ICP) results (RE < 10%). Then, the μPAD device was successfully applied to the determination of iron in tap water, well water, river water, and seawater, with no need for any prior sample pre-treatment; recovery studies were also performed (average = 100.3% with RSD = 4.2%).
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- 2023
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13. A Paper-Chip-Based Phage Biosensor Combined with a Smartphone Platform for the Quick and On-Site Analysis of E. coli O157:H7 in Foods
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Chaiyong Wu, Dengfeng Li, Qianli Jiang, and Ning Gan
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POCT assay ,paper-chip-based phage biosensor ,smartphone ,E. coli O157:H7 ,foods ,Biochemistry ,QD415-436 - Abstract
The rapid and specific point-of-care (POC) analysis of virulent pathogenic strains plays a key role in ensuring food quality and safety. In this work, a paper-based fluorescent phage biosensor was developed for the detection of the virulent E. coli O157:H7 strain (as the mode of virulent pathogens) in food samples. Firstly, phages that can specifically combine with E. coli O157:H7 (E. coli) were stained with SYTO-13 dye to prepare a novel fluorescent probe (phage@SYTO). Simultaneously, a micro-porous membrane filter with a pore size of 0.45 μm was employed as a paper chip so as to retain the E. coli-phage@SYTO complex (>1.2 μm) on its surface. The phage@SYTO (200 nm in size) was able to pass through the pores of the chip, and the complex could be retained on the paper chip using the free phage@SYTO probes. The E. coli-phage@SYTO could emit a visual fluorescent signal (excited at 365 nm; emitted at 520 nm) onto the chip, which could be detected by a smartphone to reflect the concentration of E. coli. Under optimized conditions, the detection limit was as low as 50 CFU/mL (S/N = 3) and exhibited a wide linear range from 102 to 106 CFU/mL. The sensor has potential application value for the quick and specific POCT detection of virulent E. coli in foods.
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- 2023
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14. Correction: Wu et al. A Novel Truncated DNAzyme Modified Paper Analytical Device for Point-of-Care Test of Copper Ions in Natural Waters. Chemosensors 2022, 10, 72
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Jiayi Wu, Ming Wang, Huanhuan Hong, Jianyuan Lin, Ning Gan, and Wenchao Bi
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n/a ,Biochemistry ,QD415-436 - Abstract
The authors make the following corrections to the published paper [...]
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- 2024
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15. Utilization of bio-polymeric additives for a sustainable production strategy in pulp and paper manufacturing: A comprehensive review
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Soumya Basu, Shuank Malik, Gyanesh Joshi, P.K. Gupta, and Vikas Rana
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Cellulose and derivatives ,Hemicelluloses ,Starch and derivatives ,Bio-polymeric additive ,Pulp and paper manufacturing ,Paper industries ,Biochemistry ,QD415-436 - Abstract
Renewable and bio-based materials have gained great interest on an industrial scale owing to environmental issues. Paper industries also are constantly exploring bio-resources for intrinsic chemico-physical property enhancement of paper and paper products. These bio-resources will potentially increase their cyclability besides making paper compatible beyond traditional uses. Mechanical beating or use of chemical additives or the combination of these methods are widely used to improve critical paper characteristics such as strength, surface smoothness, density, brightness, filler retention, water and grease resistivity etc. These chemical additives as mill effluents are hazardous and have detrimental effect on environment. So, to move ahead of traditional practices, the present review discusses about the production and utility of abundantly available renewable bio-polymers and their products such as starch, cellulose, plant-based proteins, microbial biopolymers, animal-based biopolymers, and natural gums etc. They represent ample prospect in terms of research and development on their functionality and industrial applications.
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- 2021
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16. Paper-Based Analytical Device for One-Step Detection of Bisphenol-A Using Functionalized Chitosan
- Author
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Abdelhafid Karrat and Aziz Amine
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chitosan ,smartphone ,paper-based analytical devices ,one-step detection ,bisphenol-A ,Biochemistry ,QD415-436 - Abstract
Bisphenol-A (BPA) is defined as one of the endocrine disrupting compounds. The accurate and inexpensive colorimetric paper-based analytical devices (PADs) are of crucial importance for BPA analysis. In this context, we developed for the first time a new PAD modified with chitosan and sulfamethoxazole (Chitosan-PAD) for the visual detection of BPA in water. The PAD was characterized by Fourier-transform infrared spectroscopy, which confirmed its modification by the functionalized chitosan. A yellow coloration was developed when a small volume of BPA was added to the Chitosan-PAD, allowing for visual and smartphone detection. This new strategy is based on a specific combination of BPA with chitosan and sulfamethoxazole that provides a hight selectivity to the Chitosan-PAD. The proposed PAD was successfully employed in combination with a pre-concentration step for the detection of 0.01 µg mL−1 of PBA with the naked eye using a 10-fold preconcentration factor. The PAD was effectively applied for BPA quantification in water samples with good recoveries. The developed PAD provides a green and cost-effective strategy for the on-site and one-step detection of BPA in water samples.
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- 2022
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17. Evaluating process of auto-hydrolysis prior to kraft pulping on production of chemical pulp for end used paper-grade products
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Wenchao Jia, Miaofang Zhou, Chenfeng Yang, He Zhang, Meihong Niu, and Haiqiang Shi
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Auto-hydrolysis ,Kraft pulping ,Pulping performance ,Fiber morphology ,Black liquor ,Biochemistry ,QD415-436 - Abstract
The objective of this work is to systematically evaluate the performance of the hydrolysis-based kraft pulping process and associated pulp and black liquor characteristics. Acacia wood chips were auto-hydrolyzed under various severities, then the hydrolyzed wood chips were kraft pulping. The results indicated that the yield of pulp significantly dropped with intensifying the auto-hydrolysis severity. Meanwhile, the removal rate of pentosan reached 98.6% in the screened pulp at the P-factor of 1 000. The fiber length, fines and fiber crimp of the screened pulp were not affected by the auto-hydrolysis treatment. Auto-hydrolyzed pulps deteriorated fibrillation and beating response of the pulp in a refining process. However, fiber length and fines changed obviously after beating treatment. After auto-hydrolysis, the tensile index of the paper matrices decreased, some particle substances were found on the surface of the pulp fiber, and the solid and organic content of the black liquor were improved.
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- 2022
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18. Fabrication of cellulose nanocrystal (CNC) from waste paper for developing antifouling and high-performance polyvinylidene fluoride (PVDF) membrane for water purification
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Pankaj Boruah, Raghvendra Gupta, and Vimal Katiyar
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Cellulose nanocrystal ,Polyvinylidene fluoride ,Hydrophilic ,Antifouling ability ,Biochemistry ,QD415-436 - Abstract
Waste papers are used as a source of raw material to fabricate cellulose nanocrystals (CNCs), a highly valued product with a high degree of crystallinity. Rod-shaped CNCs with an average diameter of 53 ± 9 nm and an average length of 234 ± 42 nm were obtained with a crystallinity of around 78%. Polyvinylidene fluoride (PVDF) thin composite membrane was developed by adding CNCs into the PVDF matrix in different amounts (0, 0.5, 1, 1.5, 2, 3 wt%). Porous finger-like structures in the membrane increased with an increase in CNC content. The FTIR measurement and high-resolution FESEM image of the membranes verified the presence of CNCs in the composite membranes. 48% high pure water flux (PWF) was obtained for PVDF/CNC as compared to pristine PVDF membrane with the addition of 3% CNCs at a pressure of 1 kg−1cm−2. Water contact angle (WCA) also decreased from 85° to 69° with increasing the wt% of CNCs in the dope solution, which signifies improved hydrophilicity. Further, the PVDF/CNCs membrane showed a high bovine serum albumin (BSA) rejection of 93% and a flux recovery ratio (FRR) of 76.76 %, whereas the pristine PVDF membrane showed BSA rejection of 70.86% and a FRR of 40.82 %, respectively.
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- 2023
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19. An Economical and Portable Paper-Based Colorimetric Sensor for the Determination of Hydrogen Peroxide-Related Biomarkers
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Wei-Yi Zhang, Hao Zhang, and Feng-Qing Yang
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paper-based analytical device ,colorimetric sensor ,point-of-care testing ,iodide ,glucose oxidase ,Biochemistry ,QD415-436 - Abstract
In this study, a paper-based sensor was developed for the detection of hydrogen-peroxide-related biomarkers, with glucose oxidase catalyzing as an example. Potassium iodide can catalyze the oxidation of 3,3′,5,5′-tetramethylbenzidine in the presence of hydrogen peroxide to colorize the paper-based biosensor detection area, which was imaged by a scanner, and the color intensity was analyzed by the Adobe Photoshop. Under the optimal conditions, the color intensity shows a good linear relationship with hydrogen peroxide and glucose concentrations in the ranges of 0.1–5.0 mM and 0.5–6.0 mM, respectively. The detection limit of hydrogen peroxide is 0.03 mM and the limit of quantification of glucose is 0.5 mM. Besides, the method was employed in measuring glucose concentration in fruit samples, and the spiked recoveries are in the range of 95.4–106.1%. This method is cost-effective, environmentally friendly, and easy to be operated, which is expected to realize the point-of-care testing of more hydrogen-peroxide-related biomarkers.
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- 2022
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20. Development of a Paper-Based Analytical Method for the Selective Colorimetric Determination of Bismuth in Water Samples
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Panagiotis A. Bizirtsakis, Maria Tarara, Apostolia Tsiasioti, Paraskevas D. Tzanavaras, and George Z. Tsogas
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paper-based analytical devices ,colorimetric determination ,bismuth ,methyl thymol blue ,water samples ,Biochemistry ,QD415-436 - Abstract
A novel, direct and simple colorimetric method employing μicroanalytical paper-based devices (μ-PADs) for the selective determination of bismuth is described. The suggested method exploits the colorimetric variation of bismuth after its rapid reaction with methyl thymol blue (MTB) in an acidic medium (pH ranging between 0.7 and 3.0), modified with nitric acid, on the surface of a paper device at room temperature. The devices are low cost, composed of chromatographic paper and wax barriers and the analytical protocol is easily applicable with minimal technical expertise and without the need for experimental apparatus. The user must add a test sample and read the color intensity of the colored Bi(III)–MTB complex formed at the sensing area using a simple imaging device such as a flatbed scanner. Various chemical variables, such as HNO3 and MTB concentration, reaction time, ionic strength, detection zone size and photo-capture detector are optimized. A study of interfering ions such as K+, Na+, Ca2+, Mg2+, Cl−, SO42− and HCO3− was also conducted. The stability of the paper devices is also studied in different maintenance conditions with particularly satisfactory results, rendering the method suitable for field analysis. The detection limits are as low as 3.0 mg L−1 with very satisfactory precision, ranging from 4.0% (intra-day) to 5.5% (inter-day). Natural water samples are successfully analyzed, and bismuth percentage recoveries were calculated in the range of 82.8 to 115.4%.
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- 2022
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21. Position Paper Progress in the development of biomimetic engineered human tissues
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Umber Cheema
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Biochemistry ,QD415-436 - Abstract
Tissue engineering (TE) is the multi-disciplinary approach to building 3D human tissue equivalents in the laboratory. The advancement of medical sciences and allied scientific disciplines have aspired to engineer human tissues for three decades. To date there is limited use of TE tissues/organs as replacement body parts in humans. This position paper outlines advances in engineering of specific tissues and organs with tissue-specific challenges. This paper outlines the technologies most successful for engineering tissues and key areas of advancement.
- Published
- 2023
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22. Wax-Printed Fluidic Controls for Delaying and Accelerating Fluid Transport on Paper-Based Analytical Devices
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Maria Tarara, Dimosthenis L. Giokas, and George Z. Tsogas
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paper-based analytical devices ,wax-printed barriers ,fluid control ,delay and acceleration of fluid flow ,enzymatic assay of glucose ,Biochemistry ,QD415-436 - Abstract
In this work, we explore a new method for controlling fluid transport rate on paper-based analytical devices that enables both the delay and the acceleration of fluid flow. The delays were incorporated by wax printing linear patterns of variable width within the flow channel and melted to penetrate the paper. In this manner, the surface tension of the fluid decreases while its contact angle increases, causing a pressure drop along the fluid path that reduces capillary flow. The acceleration of flow was accomplished by overlaying hydrophobic stripes (prepared by wax printing and melting the wax) on the hydrophilic path (top or top–bottom). In this manner, the fluid was repelled from two dimensions (vertical and applicate), increasing the flow rate. The combination of these methods on the same devices could adjust wicking time in intermediate time internals. The method enabled a wide timing of fluid transport, accomplishing a change in wicking times that extended from −41% to +259% compared to open paper channels. As a proof of concept, an enzymatic assay of glucose was used to demonstrate the utility of these fluid control methods in kinetic methods of analysis.
- Published
- 2022
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23. A Paper-Based Multicolor Colorimetric Aptasensor for the Visual Determination of Multiple Sulfonamides Based on Aptamer-Functionalized Magnetic Beads and NADH–Ascorbic Acid-Mediated Gold Nanobipyramids
- Author
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Meiling Ping, Wenchao Lv, Chen Yang, Qian Chen, Zongwen Wang, and Fengfu Fu
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aptasensor ,antibiotics residue ,seafood ,sulfonamides ,visual detection ,Biochemistry ,QD415-436 - Abstract
It is crucial that simple and high-throughput methods for determining multiple, or groups of, sulfonamides (SAs) be developed since they are widely used in animal husbandry and aquaculture. We developed a paper-based multicolor colorimetric aptasensor to detect 3 SAs: sulfaquinoxaline (SQ), sulfamethoxypyridazine (SMP) and sulfamethoxydiazine (SMD). Using a broad-specificity aptamer as a bioreceptor, we reduced the growth of nicotinamide adenine dinucleotide I (NADH)–ascorbic acid (AA)-mediated gold nanobipyramids (AuNBPs) to generate a multicolor signal. We also used a paper-based analytical device (PAD) system to deposit AuNBPs for a sensitive color signal read out. The aptasensor can detect more color changes corresponding to the concentrations of SQ, SMP and SMD and has higher sensitivity, better specificity and stability. It can also be used to determine SQ, SMP and SDM individually, or collectively, or any two together with a visual detection limit of 0.3–1.0 µM, a spectrometry quantification limit (LOQ) of 0.3–0.5 µM and a spectrometry detection limits (LOD) of 0.09–0.15 µM. The aptasensor was successfully used to determine SQ, SMP and SDM in fish muscle with a recovery of 89–94% and a RSD n = 5) < 8%, making it a promising method for the rapid screening of total SQ, SMP and SDM residue in seafood.
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- 2023
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24. In Situ Detection of Hydrogen Sulfide in 3D-Cultured, Live Prostate Cancer Cells Using a Paper-Integrated Analytical Device
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Jae-Hyung Kim, Young-Ju Lee, Yong-Jin Ahn, Minyoung Kim, and Gi-Ja Lee
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paper ,three-dimensional cell culture ,hydrogen sulfide ,live cancer cells ,colorimetric sensing paper ,paper-integrated analytical device ,Biochemistry ,QD415-436 - Abstract
In this study, a paper-integrated analytical device that combined a paper-based colorimetric assay with a paper-based cell culture platform was developed for the in situ detection of hydrogen sulfide (H2S) in three-dimensional (3D)-cultured, live prostate cancer cells. Two kinds of paper substrates were fabricated using a simple wax-printing methodology to form the cell culture and detection zones, respectively. LNCaP cells were seeded directly on the paper substrate and grown in the paper-integrated analytical device. The cell viability and H2S production of LNCaP cells were assessed using a simple water-soluble tetrazolium salt colorimetric assay and H2S-sensing paper, respectively. The H2S-sensing paper showed good sensitivity (sensitivity: 6.12 blue channel intensity/μM H2S, R2 = 0.994) and a limit of quantification of 1.08 μM. As a result, we successfully measured changes in endogenous H2S production in 3D-cultured, live LNCaP cells within the paper-integrated analytical device while varying the duration of incubation and substrate concentration (L-cysteine). This paper-integrated analytical device can provide a simple and effective method to investigate H2S signaling pathways and drug screening in a 3D culture model.
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- 2022
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25. A Novel Truncated DNAzyme Modified Paper Analytical Device for Point-of-Care Test of Copper Ions in Natural Waters
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Jiayi Wu, Ming Wang, Huanhuan Hong, Jianyuan Lin, Ning Gan, and Wenchao Bi
- Subjects
paper-based device ,mobile phone ,DNAzyme ,Cu(II)-catalyzed azide-alkyne cycloaddition ,copper detection ,natural waters ,Biochemistry ,QD415-436 - Abstract
On-site determination of trace copper ions in natural waters is of great significance to environmental monitoring, and how to develop accurate and specific point-of-care test methods is one critical issue. In the study, a paper-based analytical device (PAD) being modified with a new truncated DNAzyme (CLICK-T, which was derived from a reported DNAzyme-CLICK-17) was developed for Cu ions detection. The detection mechanism was based on Cu(II)-catalyzed azide-alkyne cycloaddition (Cu(II)AAC) reaction. It can directly conduct on-site analysis of Cu(II) ions based on fluorescent signals detected using a mobile phone. In the assay, the CLICK-T was firstly modified on the PADs. Then, water samples containing Cu ions mixed with 3-azido-7-hydroxycoumarin and 3-butyn-1-ol were instantly dripped on PADs and incubated for 20 min. Finally, the PADs were excited at 365 nm and emitted fluorescence which could be analyzed on site using smart phones. The Cu(II) concentration could be quantified through RGB analysis with the aid of iPhone APP software. The limit of detection is 0.1 µM by the naked eye due to the fact that CLICK-T exhibited a good catalytic effect on Cu(II)AAC. The Cu(II) concentration could also be directly detected without using reductant, such as ascorbic acid, which is prone to be oxidized in air. This simplifies the PDA detection process improves its efficiency. The PAD is convenient for the on-site analysis of Cu ions in natural waters.
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- 2022
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26. Paper-Based Vapor Detection of Formaldehyde: Colorimetric Sensing with High Sensitivity
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Chenglong Liao, Miao Zhang, Nan Gao, Qingyun Tian, Jiangfan Shi, Shuai Chen, Chuanyi Wang, and Ling Zang
- Subjects
vapor detection ,formaldehyde ,colorimetric ,paper-based sensor ,hydroxylamine ,Biochemistry ,QD415-436 - Abstract
We report on a novel colorimetric sensor system for highly sensitive detection of formaldehyde (FA) in the gas phase. The sensor is constructed with paper towel as a substrate coated with the sulfuric acid salt of hydroxylamine ((NH2OH)2·H2SO4) together with two pH indicators, bromophenol blue and thymol blue. Upon exposure to FA, the hydroxylamine will react with the absorbed FA to form a Schiff base (H2C=N-OH), thus releasing a stoichiometric amount of sulfuric acid, which in turn induces a color change of the pH indicator. Such a color change was significantly enriched by incorporating two pH indicators in the system. With the optimized molar ratio of the two pH indicators, the color change (from brown to yellow, and to red) could become so dramatic as to be visible to the eye depending on the concentration of FA. In particular, under 80 ppb of FA (the air quality threshold set by WHO) the color of the sensor substrate changes from brown to yellow, which can even be envisioned clearly by the naked eyes. By using a color reader, the observed color change can be measured quantitatively as a function of the vapor concentration of FA, which produces a linear relationship as fitted with the data points. This helps estimate the limit of detection (LOD), to be 10 ppb under an exposure time of 10 min, which is much lower than the air quality threshold set by WHO. The reported sensor also demonstrates high selectivity towards FA with no color change observed when exposed to other common chemicals, including solvents and volatile organic compounds. With its high sensitivity and selectivity, the proposed paper-based colorimetric sensor thus developed can potentially be employed as a low-cost and disposable detection kit that may find broad application in detecting FA in indoor air and many other environments.
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- 2021
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27. Fabrication of an All-Solid-State Ammonium Paper Electrode Using a Graphite-Polyvinyl Butyral Transducer Layer
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Irena Ivanišević, Stjepan Milardović, Antonia Ressler, and Petar Kassal
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ammonium ,solid contact ion-selective electrode ,paper-based sensor ,membrane ,potentiometric sensor ,Biochemistry ,QD415-436 - Abstract
A planar solid-state ammonium-selective electrode, employing a composite mediator layer of graphite particles embedded in a polyvinyl butyral matrix on top of an inkjet-printed silver electrode, is presented in this paper. The effect of graphite powder mass fraction on the magnitude of the potentiometric response of the sensor was systematically verified using a batch-mode and a flow injection measurement setup. Under steady-state conditions, the paper electrode provided a Nernstian response of 57.30 mV/pNH4 over the concentration range of 10−5 M to 10−1 M with a detection limit of 4.8 × 10−6 M, while the analytical performance of the array in flow mode showed a narrower linear range (10−4 M to 10−1 M; 60.91 mV/pNH4 slope) with a LOD value of 5.6 × 10−5 M. The experimental results indicate that the prepared electrode exhibited high stability and fast response to different molar concentrations of ammonium chloride solutions. The pH-response of the paper NH4-ISE was also investigated, and the sensor remained stable in the pH range of 2.5–8.5. The potentiometric sensor presented here is simple, lightweight and inexpensive, with a potential application for in-situ analysis of environmental water samples.
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- 2021
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28. Paper-Based Device for Sweat Chloride Testing Based on the Photochemical Response of Silver Halide Nanocrystals
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Tatiana G. Choleva, Christina Matiaki, Afroditi Sfakianaki, Athanasios G. Vlessidis, and Dimosthenis L. Giokas
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sweat testing ,cystic fibrosis ,paper-based devices ,silver halides ,photoreduction ,point-of-care diagnostics ,Biochemistry ,QD415-436 - Abstract
A new method for the determination of chloride anions in sweat is described. The novelty of the method relies on the different photochemical response of silver ions and silver chloride crystals when exposed to UV light. Silver ions undergo an intense colorimetric transition from colorless to dark grey-brown due to the formation of nanosized Ag while AgCl exhibits a less intense color change from white to slightly grey. The analytical signal is obtained as mean grey value of color intensity on the paper surface and is expressed as the absolute difference between the signal of the blank (i.e., in absence of chloride) and the sample (i.e., in the presence of chloride). The method is simple to perform (addition of sample, incubation in the absence of light, irradiation, and offline measurement in a flatbed scanner), does not require any special signal processing steps (the color intensity is directly measured from a constant window on the paper surface without any imager processing) and is performed with minimum sample volume (2 μL). The method operates within a large chloride concentration range (10–140 mM) with good detection limits (2.7 mM chloride), satisfactory recoveries (95.2–108.7%), and reproducibility (
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- 2021
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29. Disposable Microfluidic Paper-Based Device for On-Site Quantification of Urinary Creatinine
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Maria M. P. Melo, Ana Machado, António O. S. S. Rangel, and Raquel B. R. Mesquita
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µPAD ,creatinine determination ,urine samples ,Jaffe reaction ,real-time analysis ,Biochemistry ,QD415-436 - Abstract
In this work, a new microfluidic paper-based analytical device (µPAD) was developed for on-hand creatinine quantification in urine samples. When compared to conventional methods, this innovative paper device is more accessible and portable, it provides low-cost analysis (cost of consumables of 40 cents), and it is applicable to non-invasive biological fluids. Furthermore, the paper-based approach is used within an environmentally friendly assembly with no need for wax printing and small amounts of reagents resulting in low waste production and easy disposal by incineration. Its assembly method includes cutting paper discs arranged into several reading units within a plastic pouch, enabling effective creatinine quantification with accuracy based on a vertical flow approach. The method is based on the colourimetric reaction between creatinine and alkaline picric acid, where the solution colour changes from yellow to orange/red. Under optimal conditions, the developed method allowed creatinine quantification in the dynamic range of 2.20–35.0 mg/dL, with a limit of detection (LOD) of 0.66 mg/dL and a limit of quantification (LOQ) of 2.20 mg/dL. The colour intensity developed was processed in ImageJ software, based on digital image scanning, performed in 20 min (up to 4 h) after the sample insertion. The device is stable for up to one week when stored in a vacuum at 4 °C. The method was validated by comparing the results with a batch-wise procedure, where there were no statistically significant differences between both methods.
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- 2023
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30. Plastic-free chitosan and cellulose binder providing dry and wet strength to paper and nonwoven
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Maria Wennman, Mårten Hellberg, Anna J Svagan, and Mikael S Hedenqvist
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Nonwoven ,Binder ,Polyelectrolyte complex ,Chitosan ,Biobased ,Biochemistry ,QD415-436 - Abstract
Chemically-bonded nonwoven is commonly used in single-use products, and are often composed of cellulose fibers with a fossil-based binder. To reduce the amount of plastic littering, we investigated a biobased and biodegradable binder consisting of polyelectrolyte complexes based on chitosan, carboxymethyl cellulose and citric acid. The binder significantly improved the mechanical properties of two different types of cellulosic fiber systems in both dry and wet states. The quality of the water used in the binder had a significant impact on the mechanical properties, especially in the dry state, indicating a beneficial effect by the presence of cations. It was shown that covalent bonds were formed during the low temperature drying, and that the amount of bonds increased with a high temperature curing. Electron microscopy and tensile data indicated that the binder acted as a joint between the fiber/fiber parts. The presented results enable a sustainable solution for the current plastic-based nonwoven industry.
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- 2022
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31. LFA: The Mysterious Paper-Based Biosensor: A Futuristic Overview
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Saumitra Singh, Mohd. Rahil Hasan, Akshay Jain, Roberto Pilloton, and Jagriti Narang
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LFA ,history ,parts ,types ,construction ,futuristic applications ,Biochemistry ,QD415-436 - Abstract
Lateral flow assay (LFA) is emerging as one of the most popular paper-based biosensors in the field of the diagnostic industry. LFA fills all the gaps between diagnosis and treatment as it provides beneficial qualities to users such as quick response, Point-of-care appeal, early detection, low cost, and effective and sensitive detections of various infectious diseases. These benefits increase LFA’s dependability for disease management because rapid and accurate disease diagnosis is a prerequisite for effective medication. Only 2% of overall healthcare expenditures, according to Roche Molecular Diagnostics, are spent on in vitro diagnostics, even though 60% of treatment choices are based on this data. To make LFA more innovative, futuristic plans have been outlined in many reports. Thus, this review reports on very knowledgeable literature discussing LFA and its development along with recent futuristic plans for LFA-based biosensors that cover all the novel features of the improvement of LFA. LFA might therefore pose a very significant economic success and have a significant influence on medical diagnosis.
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- 2023
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32. A Flexible Capacitive Paper-Based Pressure Sensor Fabricated Using 3D Printing
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Wendan Jia, Qiang Zhang, Yongqiang Cheng, Jie Wang, Hulin Zhang, Shengbo Sang, and Jianlong Ji
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AgNWs ,structured flexible pressure sensor ,capacitive sensor ,3D printing ,Biochemistry ,QD415-436 - Abstract
Flexible pressure sensors usually exhibit high sensitivity, excellent resolution, and can be mass-produced. Herein, a high-resolution, capacitive, paper-based, 3D-printed pressure sensor with a simple, low-cost preparation method is proposed. The sensor has a wide detection range (300–44,000 Pa), a short response time (
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- 2022
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33. Evaluating ChatGPT as a Self-Learning Tool in Medical Biochemistry: A Performance Assessment in Undergraduate Medical University Examination
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Krishna Mohan Surapaneni, Anusha Rajajagadeesan, Lakshmi Goudhaman, Shalini Lakshmanan, Saranya Sundaramoorthi, Dineshkumar Ravi, Kalaiselvi Rajendiran, and Porchelvan Swaminathan
- Abstract
The emergence of ChatGPT as one of the most advanced chatbots and its ability to generate diverse data has given room for numerous discussions worldwide regarding its utility, particularly in advancing medical education and research. This study seeks to assess the performance of ChatGPT in medical biochemistry to evaluate its potential as an effective self-learning tool for medical students. This evaluation was carried out using the university examination question papers of both parts 1 and 2 of medical biochemistry which comprised theory and multiple choice questions (MCQs) accounting for a total of 100 in each part. The questions were used to interact with ChatGPT, and three raters independently reviewed and scored the answers to prevent bias in scoring. We conducted the inter-item correlation matrix and the interclass correlation between raters 1, 2, and 3. For MCQs, symmetric measures in the form of kappa value (a measure of agreement) were performed between raters 1, 2, and 3. ChatGPT generated relevant and appropriate answers to all questions along with explanations for MCQs. ChatGPT has "passed" the medical biochemistry university examination with an average score of 117 out of 200 (58%) in both papers. In Paper 1, ChatGPT has secured 60 ± 2.29 and 57 ± 4.36 in Paper 2. The kappa value for all the cross-analysis of Rater 1, Rater 2, and Rater 3 scores in MCQ was 1.000. The evaluation of ChatGPT as a self-learning tool in medical biochemistry has yielded important insights. While it is encouraging that ChatGPT has demonstrated proficiency in this area, the overall score of 58% indicates that there is work to be done. To unlock its full potential as a self-learning tool, ChatGPT must focus on generating not only accurate but also comprehensive and contextually relevant content.
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- 2024
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34. An Introduction to Modelling through a Microbial Interaction Application
- Author
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Fabiana Zama
- Abstract
This paper describes a teaching experiment in a Numerical Methods course for Master of Science students. The experiment uses scientific papers to develop modelling studies in the context of wine fermentation microbial interactions. The course involves theoretical and laboratory classes that focus on implementing numerical methods using Matlab for Initial Value Problems and Boundary Value Problems. The students are asked to formalise the mathematical model and build their own experiments using the information provided in the papers. Additionally, a parameter estimation experiment is organised, which involves generating synthetic data and computing noisy data to estimate the natural death rate of sensitive yeast. The results show that data noise significantly affects the parameter estimate and that scaling the data can help reduce the impact of measurement errors. The presented results can be used to investigate other possible assignments, such as how the evaluation of the Jacobian affects the estimation performance and compare different optimisation algorithms.
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- 2024
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35. A Practical Hydrazine-Carbothioamide-Based Fluorescent Probe for the Detection of Zn2+: Applications to Paper Strip, Zebrafish and Water Samples
- Author
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Boeon Suh, Dongkyun Gil, Sojeong Yoon, Ki-Tae Kim, and Cheal Kim
- Subjects
zinc ion ,hydrazine ,chemosensor ,carbothioamide ,zebrafish ,test-strip ,Biochemistry ,QD415-436 - Abstract
A practical hydrazine-carbothioamide-based fluorescent chemosensor TCC (N-(4-chlorophenyl)-2-(thiophene-2-carbonyl)hydrazine-1-carbothioamide) was applied for Zn2+ detection. TCC exhibited selective fluorescence emission for Zn2+ and did not show any interference with other metal ions. In particular, TCC was utilized for the detection of Zn2+ in paper strips, zebrafish and real water samples. TCC could detect Zn2+ down to 0.39 μM in the solution phase and 51.13 μM in zebrafish. The association ratio between TCC and Zn2+ was determined to be 2:1 by ESI-mass and Job plot. The sensing mechanism of TCC for Zn2+ was illustrated to be a chelation-enhanced fluorescence process through spectroscopic experiments and theoretical calculations.
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- 2022
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36. What Rosalind Franklin truly contributed to the discovery of DNA's structure.
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Cobb M and Comfort N
- Subjects
- History, 20th Century, DNA chemistry, DNA history, Biochemistry history, Research Personnel ethics, Research Personnel history, Sexism history
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- 2023
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37. A guide to the Michaelis-Menten equation: steady state and beyond.
- Author
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Srinivasan B
- Subjects
- Catalysis, Enzymes metabolism, Kinetics, Research Design, Biochemistry, Physics
- Abstract
The modern definition of enzymology is synonymous with the Michaelis-Menten equation instituted by Leonor Michaelis and Maud Menten. Most textbooks, or chapters within, discussing enzymology start with the derivation of the equation under the assumption of rapid equilibrium (as done by Michaelis-Menten) or steady state (as modified by Briggs and Haldane) conditions to highlight the importance of this equation as the bedrock on which interpretation of enzyme kinetic results is dependent. However, few textbooks or monographs take the effort of placing the equation within its right historical context and discuss the assumptions that have gone into its institution. This guide will dwell on these in substantial detail. Further, this guide will attempt to instil a sense of appreciation for the mathematical curve rectangular hyperbola, its unique attributes and how ubiquitous the curve is in biological systems. To conclude, this guide will discuss the limitations of the equation, and the method it embodies, and trace the journey of how investigators are attempting to move beyond the steady-state approach and the Michaelis-Menten equation into full progress curve, pre-steady state and single-turnover kinetic analysis to obtain greater insights into enzyme kinetics and catalysis., (© 2021 Federation of European Biochemical Societies.)
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- 2022
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38. Spanning Literacy Instruction: A Wikipedia Editing Assignment in an Upper-Level Biochemistry Course
- Author
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Iris Finkel and Frida E. Kleiman
- Abstract
The authors, a chemistry professor and a librarian, used a qualitative survey to assess student perceptions of a Wikipedia editing assignment that they included in a large upper-level biochemistry course. The assignment was initially intended as a public-facing alternative to a short research paper, emphasizing information literacy and scientific literacy. The goal of the survey was to use the results to enhance the assignment. The results of the survey and research for the literature review inspired a novel approach to the assignment using the perspective of metaliteracy. This approach encourages students to think critically about their role as scholars in a participatory environment.
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- 2024
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39. Comparison of Traditional Essay Questions versus Case Based Modified Essay Questions in Biochemistry
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Bansal, Aastha, Dubey, Abhishek, Singh, Vijay Kumar, Goswami, Binita, and Kaushik, Smita
- Abstract
Adult learning involves the analysis and synthesis of knowledge to become competent, which cannot be assessed only by traditional assessment tool and didactic learning methods. Stimulation of higher domains of cognitive learning needs to be inculcated to reach a better understanding of the subject rather than traditional assessment tools that relies primarily on rote learning. So, there is need for an alternative assessment tool. Hence, we conducted a study where we used case-based examination methodology. This study was conducted on 226 1st year MBBS students in Maulana Azad Medical College, New Delhi (India). Based on their compiled internal assessment marks according to monthly formative assessment, students were categorized into 3 groups (I: 0-7; II: 8-14; III: 15-20) marks out of 20 marks respectively. Two sets of question papers were set by three examiners, on the same topics carrying 50 marks each. The first set was based on traditional assessment tool (Paper-A) with recall questions and second set on case-based assessment method (Paper-B). Out of 226 students, 146 were males and 80 were females. For all groups, marks (mean ± SD) in Paper B were found to be higher (18.40 ± 4.29, 30.01 ± 4.12, and 40.33 ± 1.15) as compared to paper A (10.88 ± 4.34, 21.96 ± 7.34, and 31.50 ± 6.94) respectively. However, we found that there was significant (p < 0.001) difference in group I & II, whereas with group III, difference was found to be insignificant. Hence, we concluded that students performed better in case-based assessment rather than traditional method due to their direct involvement. Thus, for better memory and deeper learning the subjects can be assessed by case-based assessment method.
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- 2023
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40. Teaching Biologics Design Using Molecular Modeling and Simulations
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Andrew Phillips, Anusha Srinivas, Ilina Prentoska, Margaret O'Dea, Matthew Kustrup, Sarah Hurley, Savannah Bruno, Vy Nguyen, and Pin-Kuang Lai
- Abstract
Teaching chemistry and biology students about biologics design remains challenging despite its increasing importance in pharmaceutical development. Monoclonal antibodies, commonly called mAbs, are the most popular biologics. They have been developed into drugs to treat various diseases in the past decades. Multiple challenges exist for designing proper formulations to stabilize mAbs, such as preventing aggregation and mitigating viscosity. Molecular modeling and simulations can improve pharmaceutical products by examining the interactions between mAbs and other compounds, such as excipients. To introduce students to biopharmaceuticals, eight students at the Stevens Institute of Technology participated in a semester-long course to learn the challenges of pharmaceutical development and different computational skills to study biologics design. The students started with a limited background in this field. Throughout one semester, they were introduced to various literature and software tools for modeling antibodies and studying their interactions with excipients. This paper aims to develop a course structure to be replicated at other universities and institutions to teach biopharmaceutical development to students.
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- 2024
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41. The 'Tea Test' -- A Mobile Phone-Based Spectrophotometer Protocol to Introduce Biochemical Methods Independent of the Laboratory
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Katharine Hubbard, Marlena Birycka, Maisie-Elizabeth Britton, Joseph Coates, Isla Delphine Coxon, Chloe Hannah Jackson, Casper Leigh Nicholas, Tyler M. Priestley, J. J. Robins, Paula R. Ryczko, Talia Salisbury, Megan Shand, George Snodin, and Beth Worsley
- Abstract
Providing hands-on practical education without access to laboratories during the COVID-19 pandemic has required creativity and innovation. In this paper, co-authored by academic staff and students, we describe an at-home mobile phone-based 'spectrophotometer' experiment used in an introductory undergraduate biology course. Using colour picker apps, a smartphone can be used to quantify concentration, which was used to compare the strengths of different brands of tea. The protocol is designed to be low-cost and safe to perform outside of a laboratory. Students used the methods to learn important biochemical methods such as preparing dilutions, constructing calibration curves, normalising data and testing a hypothesis. We reflect on the experience of developing and using the protocol from a staff and student perspective, which highlights the advantages of this approach in terms of student independence and inclusivity. We also suggest alternative experiments that could be performed using the protocol. We encourage biology educators to think creatively about the possibilities for using mobile phones or at-home experiments in their teaching. Our experience suggests that at-home experiments like this protocol will have value even after the pandemic is over, particularly in terms of inclusivity.
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- 2024
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42. Use of OneNote Class Notebook as a Combined Electronic Laboratory Notebook and Content Delivery Tool in an Introductory Biochemistry Laboratory Course
- Author
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Ahlia Khan-Trottier
- Abstract
The COVID-19 pandemic has forced a shift in thinking regarding the safe delivery of wet laboratory courses. While we were fortunate to have the capacity to continue delivering wet laboratory experiments with physical distancing and other measures in place, modifications to the mechanisms of delivery within courses were necessary to minimize risk to students and teaching staff. One such modification was introduced in BCH370H, an introductory biochemistry laboratory course, where a OneNote Class Notebook (ONCN) was used as an electronic laboratory notebook (ELN) in place of the traditional hardbound paper laboratory notebook (PLN) used prior to the pandemic. The initial reasoning for switching to an ELN was around safety - allowing course staff and students to maintain physical distancing whenever possible and eliminating the need for teaching assistants to handle student notebooks; however, the benefits of the ONCN proved to be significantly more. OneNote acted not only as a place for students to record notes but the Class Notebook's unique features allowed easy integration of other important aspects of the course, including delivery of laboratory manuals, posting of student results, notetaking feedback, sharing of instructional materials with teaching assistants, and more. Student and teacher experiences with the ONCN as used within a fully in person biochemistry laboratory course, as well as learned best practices, are reviewed.
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- 2024
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43. Development of an Integrated and Project-Based Laboratory Course in Upper-Level Biochemistry and Molecular Biology
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Yange Liu, Shuo Tu, Xiaojuan Hu, Xiangyang Xiong, Zezheng Pan, Zhuoqi Liu, Weifeng Zhu, Daya Luo, Xiangpei Cui, Chunhong Huang, and Caifeng Xie
- Abstract
An integrated and projected-based laboratory course was described, integrating interconnected knowledge points and biochemistry and molecular biology techniques on a research project-based system. The program, which served as an essential extension of theoretical courses to practice, was conducted with a sophomore of basic medical science who had completed the course in medical biochemistry and molecular biology. This course engaged students in learning "genetic manipulation" and "recombinant DNA technology" to understand the target gene's role in disease mechanics, thus altering evaluation and treatment for clinical disease. Students could master applied and advanced techniques, such as cell culture, transfection, inducing exogenous fusion protein expression, purifying protein and its concentration assay, quantitative polymerase chain reaction, and western bot analysis. This laboratory exercise links laboratory practices with the methods of current basic research. Students need to complete the experimental design report and laboratory report, which could be advantageous for improving their ability to write lab summaries and scientific papers in the future. The reliability and validity analyses were conducted on the questionnaire, and we examined students' satisfaction with the course and their gains from the course. The student feedback was generally positive, indicating that the exercise helped consolidate theoretical knowledge, increase scientific research enthusiasm, and provide a powerful tool to be a better person and make informed decisions.
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- 2024
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44. Development of Electrochemical and Colorimetric Biosensors for Detection of Dopamine
- Author
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Rimsha Khan, Saima Anjum, Nishat Fatima, Nosheen Farooq, Aqeela Shaheen, Javier Fernandez Garcia, Muhammad Imran Khan, and Abdallah Shanableh
- Subjects
colorimetric sensing ,electrochemical sensing ,dopamine ,paper-based sensor ,Biochemistry ,QD415-436 - Abstract
Neurotransmitters are essential chemical messengers required for proper brain function, and any changes in their concentrations can lead to neuronal diseases. Therefore, sensitive and selective detection is crucial. This study presents a fast and simple colorimetric method for dopamine detection using three reagent solutions: AgNP and MPA, Ag/Au nanocomposite, and mercaptophenylacetic acid. TEM images showed a narrow distribution of Ag and Au nanoparticles with average sizes of 20 nm and 13 nm, respectively, with gold nanoparticles bound to the edges of silver nanoparticles. A paper-based biosensor was created using manual wax printing for the colorimetric detection of dopamine. Visual detection onsite showed color changes with both the silver nanoparticles and mercaptophenylacetic acid mixture and the silver–gold nanoparticle composite. Electrochemical detection using a glassy carbon electrode modified with 8 mM mercaptophenylacetic acid demonstrated high selectivity and sensitivity towards dopamine, with a peak in the range of 0.7–0.9 V. Interferences were minimized, ensuring high sensitivity and selective detection of dopamine.
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- 2024
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45. Quick Plant Sample Preparation Methods Using a Micro-Homogenizer for the Detection of Multiple Citrus Pathogens
- Author
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Chia-Wei Liu, Sohrab Bodaghi, Georgios Vidalakis, and Hideaki Tsutsui
- Subjects
sample preparation ,nucleic acid extraction ,micro-homogenizer ,paper disk ,citrus diseases ,Biochemistry ,QD415-436 - Abstract
Effective pathogen detection is essential for plant disease control. However, plant sample preparation for downstream assays, such as quantitative polymerase chain reaction (qPCR), is challenging to perform outside of a laboratory. This paper reports two sample preparation methods featuring chemical and mechanical lysis and nucleic acid extraction using a micro-homogenizer, followed by serial dilution or nucleic acid purification with a paper disk before assay. Five minutes of lysis and extraction resulted in DNA and RNA yields of up to 76.5% and 63.3%, respectively, compared to mortar and pestle controls. Crude lysates were unsuitable for direct use in qPCR assays; however, serial dilution or quick wash using chromatography paper rendered samples ready for such assays. Additionally, the nucleic acids stored on paper disks under various storage conditions remained stable for one month. These methods can facilitate the in-field preparation of citrus samples and allow for both onsite and mail-in diagnostics for growers.
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- 2024
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46. Instruction Tools for Signal Processing and Machine Learning for Ion-Channel Sensors
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Sattigeri, Prasanna, Thiagarajan, Jayaraman, Ramamurthy, Karthikeyan, Spanias, Andreas, Banavar, Mahesh, Dixit, Abhinav, Fan, Jie, Malu, Mohit, Jaskie, Kristen, Rao, Sunil, Shanthamallu, Uday, and Katoch, Sameeksha
- Abstract
Ion channel sensors have several applications including DNA sequencing, biothreat detection, and medical applications. Ion channel sensors mimic the selective transport mechanism of cell membranes and can detect a wide range of analytes at the molecule level. Analytes are sensed through changes in signal patterns. Papers in the literature have described different methods for ion channel signal analysis. In this paper, the authors describe a series of new graphical tools for ion channel signal analysis which can be used for research and education. The paper focuses on the utility of these tools in biosensor classes. Teaching signal processing and machine learning for ion channel sensors is challenging because of the multidisciplinary content and student backgrounds which include physics, chemistry, biology, and engineering. The paper describes graphical ion channel analysis tools developed for an online simulation environment called J-DSP. The tools are integrated and assessed in a graduate bio-sensor course through computer laboratory exercises.
- Published
- 2022
- Full Text
- View/download PDF
47. Effect of Dissolution Time on the Development of All-Cellulose Composites Using the NaOH/Urea Solvent System
- Author
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Juan Francisco Delgado, Andrés Gerardo Salvay, Silvana Arroyo, Celina Raquel Bernal, and María Laura Foresti
- Subjects
all-cellulose composites ,partial dissolution method ,NaOH/urea solvent system ,filter paper ,dissolution time ,Biochemistry ,QD415-436 - Abstract
Innovative and sustainable all-cellulose composites (ACCs) can be obtained by partial dissolution of cellulosic fibers and regeneration of the dissolved fraction. Among cellulose solvents, sodium hydroxide/urea solutions are recognized as promising low-environmental impact systems. In this work, filter paper (FP) was dissolved with a 7 wt% NaOH/12 wt% urea aqueous solution, kept at −18 °C for different time intervals, regenerated with distilled water and finally dried under different conditions. The developed films were characterized in terms of morphology, porosity, optical properties, crystalline structure, hydration and mechanical properties. The porosity of the composites decreased with dissolution time due to the progressive filling of voids as the cellulosic fibers’ surface skin layer was dissolved and regenerated. Samples treated for 4 h showed the minimum values of porosity and opacity, high hydration and a substantial change from cellulose I to cellulose II. Hot pressing during drying led to relevant improvements in ACCs stiffness and strength values.
- Published
- 2023
- Full Text
- View/download PDF
48. SJMSS paper of the year 2022.
- Author
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Harridge, Stephen D. R.
- Subjects
- *
BIOCHEMISTRY , *AWARDS , *SPORTS sciences , *SERIAL publications , *PHYSICAL training & conditioning , *PHYSICAL activity , *SPORTS medicine , *BIOMECHANICS , *ORTHOPEDICS - Abstract
An introduction is presented in which the author discusses articles within the issue on topics including the effects of polarized or pyramidal periodizations during a 16-week training period in well-trained endurance athletes, muscle fascicle behavior during three different hamstring exercises, and exercise-induced laryngeal obstruction on national and international athletes.
- Published
- 2023
- Full Text
- View/download PDF
49. On the Paper by Leonid A. Gavrilov and Natalia S. Gavrilova entitled "Trends in Human Species-Specific Lifespan and Actuarial Aging Rate" Published in Biochemistry (Moscow), Vol. 87, Nos. 12-13, pp. 1622-1633 (2022).
- Author
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Mikhalsky, Anatoly I.
- Subjects
- *
BIOCHEMISTRY , *AGING , *HUMAN beings - Abstract
The methodology used for analyzing the survival process should keep in mind heterogeneity in empirical data. Cross-sectional data are more heterogeneous in comparison with birth-cohort data. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
50. Land-breaking publications and the impact of these publications in several research areas: commentary for the 100th anniversary of Journal of Biochemistry.
- Author
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Taniguchi N
- Subjects
- History, 20th Century, Anniversaries and Special Events, Biochemistry history
- Published
- 2022
- Full Text
- View/download PDF
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