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The subalpine, atmospherically fed Śnieżka peatland, located in the Polish part of the Sudetes, is one of the nominated candidates for the GSSP of the Anthropocene. Data from two profiles, Sn1 (2012) and Sn0 (2020), from this site are critical for distinguishing the proposed epoch, while an additional core Sn2 is presented to support main evidence. The Sn0 archive contains a wide array of critical markers such as plutonium (Pu), radiocarbon (F14C), fly ash particles, Hg and stable C and N isotopes which are consistent with the previously well documented 210Pb/14C dated Sn1 profile, which provides a high-resolution and comprehensive database of trace elements and rare earth elements (REE), Pb isotopes, Pu, Cs, pollen and testate amoebae. The 1952 worldwide appearance of Pu, owing to its global synchronicity and repeatability between the cores, is proposed here as a primary marker of the Anthropocene, supported by the prominent upturn of selected chemostratigraphic and biostratigraphic indicators as well as the appearance of technofossils and artificial radionuclides., The Anthropocene Review, 10 (1), ISSN:2053-0196, ISSN:2053-020X

International audience; A large part of the soil protist diversity is missed in metabarcoding studies based on 0.25 g of soil environmental DNA (eDNA) and universal primers due to ca. 80% co-amplification of non-target plants, animals and fungi. To overcome this problem, enrichment of the substrate used for eDNA extraction is an easily implemented option but its effect has not yet been tested. In this study, we evaluated the effect of a 150 μm mesh size filtration and sedimentation method to improve the recovery of protist eDNA, while reducing the co-extraction of plant, animal and fungal eDNA, using a set of contrasted forest and alpine soils from La Réunion, Japan, Spain and Switzerland. Total eukaryotic diversity was estimated by V4 18S rRNA metabarcoding and classical amplicon sequence variant calling. A 2- to 3- fold enrichment in shelled protists (Euglyphida, Arcellinida and Chrysophyceae) was observed at the sample level with the proposed method, with, at the same time, a 2-fold depletion of Fungi and a 3- fold depletion of Embryophyceae. Protist alpha diversity was slightly lower in filtered samples due to reduced coverage in Variosea and Sarcomonadea, but significant differences were observed in only one region. Beta diversity varied mostly between regions and habitats, which explained the same proportion of variance in bulk soil and filtered samples. The increased resolution in soil protist diversity estimates provided by the filtration-sedimentation method is a strong argument in favour of including it in the standard protocol for soil protist eDNA metabarcoding studies

The exploitation of peatlands in Estonia, which began in the 17th century, has degraded them to a great extent. Consequently, cutover and drained peatlands have become the sources of CO2. Global warming has led to a need for policies focusing on the protection and restoration of drained and degraded peatlands. Hence, to compare the effect/progress of restoration with the past pristine ecosystem baseline before the peatland was destroyed by cutting, we examined a peat core from North Estonia using chronology based on 14C by analyzing several proxies in high resolution including testate amoebae, plant macrofossils, pollen, non-pollen palynomorphs, and diatoms. The results revealed a striking ecological contrast between the pristine (ca. 2 kyrs) and restored state (currently) of the peatland. The pristine state was characterized by a domination of Sphagnum fuscum/rubellum and Archerella flavum, suggesting that extraction area of Hara peatland was a wet and stable ombrotrophic bog. As a result of peat exploitation, deposits comprising the last ca. 2 kyrs were cut. In turn an important feature of the restored section of the peat core was the domination of a green algae (Chlorophyta) and Eriophorum vaginatum as well as testate amoebae species Arcella discoides, which is considered an indicator of hydrological instability. The main difference between the predisturbed and restored parts of the peat core section was that a minor cover of peat-forming Sphagnum and mixotrophic testate amoebae was present in the top inundated part. We state that a healthy raised bog—the target of restoration—should consist abundant mixotrophic testate amoebae such as Archerella flavum and Hyalosphenia papilio which are good indicators of a well-functioning Sphagnum bog ecosystem even if the Sphagnum species differ from the reconstructed ecological baseline conditions. Our study highlights the extensive damage caused to the peat-forming ombrotrophic peatland by extraction and how difficult, challenging, and time-consuming is the process of ecological restoration.

La Trobe University Faculty of Science, Technology and Engineering Murray Darling Freshwater Research CentreMDFRC item.Coastal lagoons of the principal islands of Bass Strait, between Australia's mainland and Tasmania, were sampled in two summers. Many, particularly those of low to moderate salinity, contain relatively rich assemblages of microinvertebrates and some endemic Australian freshwater algae. Several species of testate amoebae and rotifers could not be referred to known morphotypes and are probably new species. The presence of certain species on islands of Bass Strait provides a link between populations in mainland Australia and others in Tasmania. Those lagoons are identified that, by virtue of catchments or buffer zones clothed in native vegetation, are favourable for the survival of a native and partly endemic microbiota.

Human activities may change beta diversity—the spatial variation in species composition—in different ways. Positive and negative trends in beta diversity are referred as biotic differentiation and homogenization, respectively. In this context, river damming is likely to be a major cause of changes in beta diversity over time. Here, we evaluated the impact of damming on zooplankton beta diversity in two Brazilian reservoirs. We predicted that damming would cause biotic differentiation due to the creation of areas with different hydrological conditions, which would allow the colonization and population growth of species belonging to different zooplankton groups. Our results for the total zooplankton community were consistent with the hypothesis of biotic differentiation, either due to the increased mean beta diversity or due to the tendency of increasing beta diversity over time after damming. An indicator species analysis also showed that a large proportion of taxa that can be categorized as euplanktonic were mainly indicators of the period after damming, whereas the opposite was true for testate amoebae. Increased beta diversity should be interpreted as an impact of damming. However, we speculate that, under a process of water quality deterioration, biotic homogenization is likely to occur, reversing the patterns we observed.

Peatland complexes in the humid highlands of Hawai‘i are vital refuges of biodiversity and freshwater resources. Hawaiian peat deposits are also rare repositories of terrestrial ecosystem archives located in an otherwise vast expanse of ocean. We investigated the potential for researching the paleohydrological history of Hawaiian montane peatlands on Kohala, Hawai‘i Island through analyses of testate amoebae and Cladocera. Surface peat was collected from a variety of ecohydrological habitats (from water pools to hummocks) and analyzed for modern testate amoeba and cladoceran species relative abundance. We identified 54 morphotype taxa from 21 genera of testate amoebae, 4 taxa and genera of littoral Cladocera, and the common peat rotifer Habrotrocha angusticollis. Testate amoeba diversity and morphotype occurrence mirrored observations from many high-latitude peatland studies. Constrained and unconstrained ordinations support the hypothesis that surface moisture, measured as water-table depth, is an important control on the distribution of testate amoebae and Cladocera in Hawaiian peatlands. Transfer functions relying on weighted-averaging and modern analogs were developed to predict water-table depths from species relative abundance data, and these perform well under leave-one-site-out cross-validation: RMSEP = 9.75–10.3 cm, R2 = 0.56–0.62. Including cladoceran abundance data in the calibration dataset produced modest model improvement: RMSEP = 1–8% and R2 = 2–13%. A weighted-average partial-least-squares transfer function was applied to microfossil assemblages from a 0.5 m-long peat core with a 210Pb decay chronology anchored by ten existing measurements of 210Pb activity and a Bayesian statistical framework. Microfossils were well-preserved in the peat core. The water-table depth optima of an abundant down-core taxa, Hyalosphenia subflava, is not precisely constrained in the calibration data set, but estimates match those of other tropical studies. A reconstruction of water-table depth indicates dry early nineteenth-century conditions, wet conditions in the late 19th to early twentieth centuries, followed by progressive drying for much of the twentieth-century. Testate amoeba composition appears to have been sensitive to severe drought in recent decades. The results signal that assemblages of testate amoebae and Cladocera are useful proxies of Hawaiian peatland paleohydrology and should be considered alongside other archives of Hawaiian environmental history.

We present a ~ 40–year record of environmental change in the Swan Oxbow, Yangtze River, China, inferred from testate amoeba and sedimentary pigment data, combined with remote sensing and analysis of local socio–economic growth. These data indicate there were several distinct phases of aquatic conditions linked to human activities in the region: (1) Between ca. AD 1970 and 1984, there may have been some exchange of water and organic matter between the Swan Oxbow and the main river channel, following initial hydrologic disconnection in 1972. The lake area was relatively large in the early phase after the oxbow first formed, and the trophic state generally increased during that time frame, (2) From ca. AD 1984 to 1992, the lake area was about a third smaller in size, while the human population and GDP increased about 10% and 10x, respectively, compared to values in 1975. The nutrient status (inferred from testate amoeba and pigment data) increased, owing to the greater discharge of nutrients and separation of the Swan Oxbow from the main Yangtze River, which reduced water supply and increased sedimentation in the oxbow, (3) From ca. AD 1992 to 2003, the lake continued to diminish in size, to an area

The main objective of the study was to reconstruct palaeoenvironmental changes recorded in lake and peatland sediments from the peatland located in the western part of Lublin Polesie, where no former palaeoecological research had been conducted, and to compare findings to changes reconstructed for other sites in the eastern part of this region. Climate changes were considered, as well as the effects of human impact, which intensified particularly after the Middle Ages. In recent times the trajectory of change of the Mytycze ecosystem was exceptional because in the 1960s this area was included in the Wieprz-Krzna Canal System, and then renaturated after the discontinued use of hydraulic engineering structures. This is the largest canal in Poland and runs in the immediate vicinity of the watershed supplied by two large rivers: the Bug and the Wieprz. The presented study mainly relied on the following proxies: pollen, testate amoebae and other non-pollen palynomorphs, and peat decomposition. Data from the Archaeological Picture of Poland (AZP) allowed for a detailed reconstruction of chronological changes in the palaeoenvironment. An important aspect of this study was also the first ever use of testate amoebae remains in the reconstruction of the Lublin Polesie environment. Findings from research on the Mytycze site for the first time confirmed that the beginning of the formation of the lake basin was similar to that reconstructed for all other lakes in the Lublin Polesie region investigated previously with multidisciplinary methods, and dates to the end of the late glacial of the Vistulian. The early phase of the peatland formation resulting from the shallowing of the lake was very long and lasted from the Subboreal period to the 15th century. The youngest phases with records of human impact are characterised by increased human pressure (intensified cultivation of cereals, buckwheat, legumes and brassica crops) after the Wieprz-Krzna Canal System was put into use, and intensified grazing in the vicinity of Lake Mytycze. This phase, dated to the 1970s, is followed by a marked increase in the water level, which was probably related to the supply of water to the dammed Lake Mytycze from Wieprz-Krzna Canal via Lake Dratow. Records in the upper part of the core indicate the return of Sphagnum spp., most likely due to the cessation of the use of hydraulic engineering structures and the renaturation of the lake and peatland ecosystem, which led to the appearance of valuable species of plants and birds.

Although biomineralized skeletal elements dominate the Phanerozoic fossil record, they did not become common until ~550-520 Ma when independent acquisitions of biomineralization appeared in multiple lineages of animals and a few protists (single-celled eukaryotes). Evidence of biomineralization preceding the late Ediacaran is spotty aside from the apatitic scale microfossils of the ~811 Ma Fifteenmile Group, northwestern Canada. Here, we describe scale-shaped microfossils from four vase-shaped microfossil (VSM)-bearing units of later Tonian age: the Togari Group of Tasmania, Chuar and Pahrump groups of southwestern United States, and the Roaldtoppen Group of Svalbard. These scale-shaped microfossils consist of thin, ~13 micron-long plates typically surrounded by a 1-3 micron-thick colorless envelope; they are found singly and in heterotypic and monotypic clusters of a few to >20 specimens. Raman spectroscopy and confocal laser scanning microscopy indicate these microfossils are composed of apatite and kerogen, just as is seen in the Fifteenmile Group scale microfossils. Despite compositional similarity, however, these scales are probably not homologous, representing instead, an independent acquisition of apatite mineralization. We propose that these apatite-kerogen scale-shaped microfossils are skeletal elements of a protistan cell. In particular, their consistent co-occurrence with VSMs, and similarities with scales of arcellinid testate amoebae, a group to which the VSMs are thought to belong, suggest the possibility that these microfossils may be test-forming scales of ancient arcellinid testate amoebae. The apparent apatite biomineralization in both these microfossils and the Fifteenmile scales is unexpected given its exceedingly rare use in skeletons of modern protists. This modern absence is attributed to the extravagance of using a limiting nutrient in a structural element, but multiple occurrences of apatite biomineralization in the Tonian suggest that phosphorus was not a limiting nutrient for these organisms, a suggestion consistent with the idea that dissolved seawater phosphate concentrations may have been higher at this time.

The present study aimed to explore the effect of a range of moisture content levels, including 65%, 72%, and 78%, on physicochemical properties and microfauna communities during vermicomposting of municipal sludge. As a result, death of perishable microfauna together with the degradation of organic matter was the dominant response in all groups in the early period of vermicomposting, while the effects of moisture content levels on various physiochemical parameters did not appear until the mid-later period. After the treatment with 78% moisture content, the content of mineral nitrogen was 1.186 g/kg in the sludge, with a 9.36 × 103 ind./g of microfauna quantity and 663.01 g of earthworm biomass. The values of these three measurements in 78% group were significantly higher than other two groups (p < 0.05), indicating that the effects of 78% moisture content were more pronounced for promoting nitrogen mineralization as well as microfauna and earthworms growth during vermicomposting. Specifically, testate amoebae were strongly associated with nitrification process, while nematodes were related to ammonification and phosphorus mineralization, of which testate amoebae had great potential of being bioindicators during vermicomposting of municipal sludge.

A better understanding of past long-term environmental changes in the subarctic region is crucial for mitigation of the possible negative effects of climate warming in this vulnerable region. This study provides a new multi-proxy reconstruction of regional vegetation changes and peatland development for north-eastern Fennoscandia (Russia) during most of the Holocene. To that purpose, we performed plant macrofossil, pollen, testate amoebae, peat humification, loss on ignition and radiocarbon analyses of the peat deposits from a mire around Vodoprovodnoe Lake (the Kindo Peninsula, the Republic of Karelia). Our data indicate that the peat deposits started accumulating before 9147 ± 182 cal. yr. BP. The vegetation cover in the area was mainly typical for the northern taiga zone, except for the period ~7800–5600 cal. yr. BP, when it generally resembled the middle taiga zone. The vegetation cover and peatland were greatly affected by reoccurring fires, which can be partly related to human activity. These events were associated with an increased proportion of birch in the vegetation cover (as a pioneer species) and/or water level decreases. By 600 cal. yr. BP, the peatland and the surrounding vegetation reached its current state and only minor changes had been recorded since that time. Overall, our results suggest a considerable and unexpected role of fires in the postglacial dynamics of subarctic peatlands.

The policy and practice of ecological restoration and conservation in China obtained some remarkable results. For example, Sphagnum moss growing on abandoned farmland, which was peatland before agricultural use, has rapidly expanded the wetland area in SW China. Microorganisms such as testate amoebae are sensitive to environmental change and thus have been widely used as ecological indicators in various habitats. We analyzed differently aged Sphagnum growing plots on a Sphagnum growing farmland and natural Sphagnum plots in SW China to examine how Sphagnum-dwelling testate amoeba communities and corresponding protozoic silicon (Si) pools respond to ecological restoration practice. We found that abundance, taxon richness, and diversity of testate amoebae were higher in Sphagnum growing farmland plots compared to natural Sphagnum plots. Protozoic Si pools showed an increase with Sphagnum growing time representing increased Si accumulation by idiosomic testate amoeba shells. However, protozoic Si pools were negatively correlated with taxon richness and diversity of testate amoebae. Our results showed that (i) natural Sphagnum plots were not characterized by the expected higher biodiversity of testate amoebae compared to Sphagnum growing plots and (ii) consequently protozoic Si pool quantity in natural Sphagnum plots was less driven by biodiversity of testate amoebae than expected. We concluded our results to underline the value of (i) environmental restoration policy in general and (ii) testate amoeba communities and corresponding protozoic Si pools for Si cycling in restoration areas of peatlands in particular. Based on our results, we recommend a sustainable cultivation of Sphagnum moss and an additional establishment of protected areas, where no Sphagnum harvesting occurs. These protected Sphagnum areas might represent hot spots of undisturbed testate amoeba communities and corresponding protozoic Si pools and thus of microbial Si cycling.

Testate amoebae are a frequently used palaeoecological proxy for reconstructing changes in palaeohydrological conditions, particularly in studies of Sphagnum-dominated peatlands. Their use in palaeoecological studies has increased following the development of transfer functions, allowing for the quantitative reconstruction of water-table depth changes through time. Increasingly, they are included in non-pollen palynomorph (NPP) studies alongside a wide range of other proxies, representing a valuable tool, particularly in multi-proxy studies.Testate amoebae have been used for qualitative assessment of palaeohydrology in NPP studies and may aid the verification of environmental interpretations of conditions inferred from curves of NPP with unknown ecology and taxonomy. Their usefulness in such studies is limited by the destruction of tests owing to harsh chemical treatments used in pollen preparation methods. This makes community distribution data of testate amoebae derived by these methods largely unsuitable for quantitative assessment of water-table depth. Furthermore, many palynological studies combine testate amoebae as one single curve, losing further ecological detail. Patterns of change of surviving species, most commonly of Assulina, Archerella, Arcella, Hyalosphenia and Archerella flavum, remain relatively unaffected and therefore can still be useful for interpreting qualitative changes in hydrological conditions through time, particularly when coupled with other proxies.

Testate amoebae are a highly diverse and polyphyletic group of heterotrophic, free-living amoeboid protists that consist of a single cell enclosed within a shell, or test. These organisms i...

Peat cores from boreal bog and fen sites in the Hudson Bay Lowlands of Northern Ontario, Canada, were analysed to calculate Holocene carbon accumulation rates, and to show how testate amoeba taxonomic assemblages, inferred depths to water table, and four morpho-traits that may be linked to function (mixotrophy, aperture size, aperture position, and biovolume) changed since peatland initiation. Carbon accumulation rates were on average higher for the Holocene in the fen record (19.4 g C m−2 yr−1) in comparison with the bog record (15.7 g C m−2 yr−1), which underwent a fen-to-bog transition around 6900 cal yr BP. Changes in rates of carbon accumulation were most strongly driven by changes in rates of peat vertical accretion, with more rapid rates in the fen record. Carbon accumulation rates were highest following peatland initiation when reconstructed water tables were highest, and in the late Holocene, when water table positions were variable. Taxa with larger biovolumes and apertures were generally more abundant when reconstructed water tables were higher, most notably following peatland initiation. Mixotrophic taxa were more prevalent in drier conditions and in the bog record. Changing frequencies of morpho-traits suggest that testate amoebae may occupy a higher trophic position in the microbial food web during wetter periods, signaling the possibility of internal feedbacks between peatland ecohydrology and critical ecosystem functions including long-term carbon accumulation.

Testate amoebae are an irreplaceable key component of microbial communities in many aquatic and soil ecosystems and well known as useful bioindicators. In the present work, testate amoebae compositions in different-type biotopes of freshwater waterbodies of North Vietnam were investigated for the first time. A total of 80 species and subspecies belonging to 12 genera and 8 families were identified from 105 samples collected in Suoi Hai, Xuan Khanh, Cam Quy, Ho Ba reservoirs, and Van Long wetland. Difflugia acutissima, D. brychtai, D. distenda, D. elegans teres, D. glans, and Awerintzewia cyclostoma were new records for Vietnam. Centropyxis aculeata, D. schurmanni, and D. elegans were the most common species in all types of biotopes including plankton, benthos, and periphyton. The results of two-way ANOVA showed statistically significant interaction effects of waterbodies and the type of biotopes on testate amoebae species richness per sample (p

In this study, we compared new testate amoeba records produced by the conventional water-based wet-sieving method to testate amoeba data from previous palynological analyses of two Holocene peat profiles from British Columbia, Canada. We used 132 paired samples from the same peat cores to compare the composition of testate amoeba assemblages between the two methods and evaluate the potential of palynological testate amoeba records as quantitative paleohydrological proxies in peatlands. Our results suggest that the palynological treatments (acetolysis, 10% KOH and 150 µm sieving) substantially reduce test concentrations, diversity and richness in most pollen-slide samples. The smaller sieve size used in the palynological treatment (i.e. 150 µm) removed only a small fraction of the total tests, but could introduce a species-specific bias in assemblage composition. However, major shifts between wet and dry conditions, as shown by the water table depth (WTD) reconstructions using wet-sieved samples, were relatively well captured by the palynological datasets in most instances. The palynological assemblages with counts of >50 tests ( n = 30) provided WTD estimates similar to those inferred from the wet-sieved samples as the most dominant hydrophilous and xerophilous taxa were relatively well represented in the pollen-slide samples in the two studied peat cores. Testate amoeba data from pollen slides can provide useful paleohydrological information particularly when combined with other paleoenvironmental proxies. Nonetheless, if the goal is to generate quantitative paleohydrological reconstructions, we recommend that testate amoeba analyses be conducted using the wet-sieving method, as testate amoeba concentrations, diversity and richness are typically much lower in samples prepared with palynological treatments.

Deforestation of riparian areas is a major driver of biodiversity loss in aquatic ecosystems. Thus, we investigated the influence of forest cover and physical and chemical characteristics of streams on zooplankton communities in the southeastern Amazon. We addressed the following questions: (1) Are environmental factors (water physical and chemical characteristics and landscape variables) and dispersive processes (reflected in the spatial structure among sampling sites) efficient predictors of zooplankton communities in different hydrologic seasons? (2) Can zooplankton species be indicators of watersheds’ forest-cover levels? We sampled 15 streams located in nine rural settlements in northern Mato Grosso, Brazil, in the dry (August) and rainy (March) seasons of 2017. The forest-cover level had a significant effect on the physical and chemical characteristics (conductivity, dissolved oxygen, and temperature) of streams and also on the structure and composition of zooplankton communities, mainly of rotifers and testate amoebae. Areas with low vegetation cover had seasonal changes in species richness, individuals density, and zooplankton community structure. Environmental and spatial variables had no significant effect on the structure of zooplankton communities, which may indicate the strong influence of stochastic factors. Species from three zooplankton groups (rotifers, microcrustaceans, and testate amoebae) were indicators of forest-cover classes. This study provided valuable contributions to the conservation of riparian ecosystems and the use of biological indicators in environmental monitoring programs.

The Arctic is experiencing substantial warming with possibly large consequences for global climate when its large soil carbon stocks are mobilized. Yet the functioning of permafrost peatlands, which contain considerable amounts of carbon, is still not fully understood. Palaeoecological studies may contribute to unravelling this functioning but require actuo-ecological calibration of the environmental proxies used. Testate amoebae may be valuable proxies for palaeoecological reconstruction, but indeed still large gaps exist regarding their present-day distribution in Arctic peatlands. This study presents the distribution of testate amoebae taxa with high (1 m) spatial resolution along a transect crossing an Arctic ice-wedge polygon mire. Whereas the polygon ridges are characterised by taxa that are known to be typical of dry environments or hydrologically indifferent, the low-lying wet settings show a mixture of wet- and dry-living taxa, indicating seasonally rapidly changing conditions. High testate amoebae concentrations were only found on the dry polygon ridges. Archerella flavum occurs in various moss species in drier polygon settings, in contrast to temperate regions where the species is exclusively known from wet sites with Sphagnum, which probably relates to the special moisture conditions associated with permafrost. To compare the results of full testate amoebae analysis with those of palynology, each surface sample was split into two parts and prepared and analysed following standard testate amoebae analysis and palynological methods, respectively. Clear differences in qualitative content were found and can be attributed to the different preparation methods and to possible small (a few cm) differences in sample location. Nevertheless, the indicative value of testate amoebae found in pollen samples adds importantly to the ecological inference of palynological studies. Overall testate amoebae research is very valuable for the recognition of past ecological settings and the accurate reconstruction of past hydrological regimes in Arctic mires. Considerably more research is, however, necessary to cover the total (ecological) diversity of testate amoebae populations in NE Siberia.

This paper presents the results of multiproxy research (pollen, charcoal, plant macrofossil and testate amoebae) on the biogenic deposits core from Gorodetsky Moch, an ombrotrophic peatland in western Russia (Western Dvina Lakeland). We reconstructed the impact of disturbance on peatland development in the last 300 years by using chronology of the records based on14C and210Pb data set. The multiproxy reconstruction was compared with changes in the land cover using historical maps and Corona images, which provides a unique spatial analysis of past ecological and land-use changes. We aimed to determine the effect of local disturbances (drainage) and land-use changes (landscape openness) on the development of the peatland during the last 300 years. Our study suggests that human activity had a crucial impact on the development of the peatland in the last centuries. The analysis of testate amoebae and plant macrofossils revealed a clear disturbed layer in the second half of the 20th century CE. Most probably, the drainage of the peatland triggered changes in the community of testate amoebae and plants, thereby causing a functional shift in Sphagnum peatland ecosystem. The hydrological stress and vegetation composition shift led to the collapse of mixotrophic testate amoebae. However, the peatland showed strong resilience and recovered toward the end of the 20th century CE and the beginning of the 21st century CE, despite the lower water table. Our study shows an example of the peatland ecosystem that experienced a considerable stress but finally sustained the former function.

Rain-fed granite rock pools are geological landforms with a worldwide distribution. However, their role as habitats for microorganisms has been barely explored. We carried out a detailed morphological inventory of the ciliated protists in the sediments of three granite rain-fed rock pools from a Spanish National Park. The ciliate seed bank in the rock pools comprised 54 morphospecies. The species number inferred for each pool by rarefaction analysis was similar to that observed by microscopy. The most representative species were small bacterivorous ciliates, although the distribution of ciliate groups was significantly different in each rock pool. Testate amoebae were also found to be rich in species. This study demonstrates the existence of a diverse ciliate community adapted to persist in these ephemeral and extreme rock pool habitats through species resistance structures, many of which have not been described previously. The presence of competitive species in dormant stages prevents local extinctions through a sequential excystation over time. Our results provide a benchmark for studying protist and microbial biodiversity within rain-fed granite rock pools, a unique habitat that merits bio- and geo- conservation.

Large biological diversity can be observed in floodplains, which is linked to several ecosystem processes, such as productivity and nutrient cycling; among the species involved in these processes are zooplanktonic organisms. Here, we aimed to quantify the temporal trend of zooplankton, through changes in species richness and composition (β-diversity) and the abundance of individuals, in preserved and non-preserved sites of the Upper Parana River floodplain during the last 19 years, and 617 species (321 rotifers, 135 testate amoebae, 107 cladocerans, and 54 copepods) were recorded. The highest species richness was verified in 2002 and the lowest in 2016. Zooplankton richness and abundance in non-preserved sites show clear temporal homogenization, while preserved sites show cyclical fluctuations over time. The rarefaction curve showed the biodiversity potential in this floodplain. Three invasive species were recorded ( Kellicottia bostoniensis , Daphnia lumholtzi , and Mesocyclops ogunnos ). The variation in the hydrologic regime, the oligotrophication, and the reduced connectivity among the sites were the main factors interfering in the species composition over the years and leading to a reduction of the species richness and abundance. The preservation of the tributaries with pristine characteristics is very important for the mitigation of these synergistic effects under the community structure.

In this article, we examined the indicative value of a relationship between two non-pollen palynomorphs (NPPs), fungal HdV-10, related to the presence of Calluna vulgaris, and HdV-31A, which is testate amoeba – Archerella flavum. Both are frequently present on slides designated for pollen analysis, prepared from Sphagnum peat. We analysed three profiles from three extensive ombrotrophic peatlands in northern Poland, in which the content of testate amoebae (TA) was examined and TA-inferred depth to the water table (DWT) was reconstructed. The new analysis of palynological samples regarding NPPs revealed that strong increases in HdV-10 content were mostly simultaneous to HdV-31A declines. However, the relations between both types were not statistically significant. The rapid increases in HdV-10, despite the fact that this type of conidiospores is related to drier habitats on peatlands, were tentatively interpreted as an indicator of rapid rises in the water table level which, in consequence, might have stimulated the production of these spores by fungi. In addition, a negative correlation between HdV-31A and Arcella discoides and positive one, but weaker, in case of HdV-10 (attributed by some authors to species Trichocladium opacum (Corda) S Hughes) and A. discoides show a link between mutual fluctuations of both NPPs and hydrological instabilities on peatland. The Bagno Kusowo bog, the westernmost peatland subjected to the study, displayed an intriguing agreement between the presence of peat sections with strong increases in HdV-10 and cold climate events affecting Europe. Our study reveals that counting even a limited number of NPP types during the standard pollen analysis of Sphagnum peat may support the interpretation of results, especially, in cases when the investigation lacks testate amoeba analysis. When the reconstruction of TA-inferred DWT is provided, it may introduce additional information about the patterns of hydrological dynamics.

Lake George (NY) is surrounded by Forever Wild Forest in the Adirondack Park and has a Class AA Special water quality rating, yet lake monitoring has revealed increasing anthropogenic impacts from salt and nutrient loading over the past 30 years. To reconstruct anthropogenic influence on the lake (e.g., salt loading, eutrophication, climate warming), we characterized modern stable isotopes and testate amoeba and diatom assemblages in surface sediments from 33 lake-wide sites and compared their variability to 36 years of water-quality data. Linear regression analyses support testate amoebae as rapid responders and recorders of environmental change because taxa are strongly correlated with percent change of important water quality parameters. Our assessment indicates that: 1) Netzelia gramen is associated with aquatic plants and filamentous algae, making them a valuable aquatic plant/alga indicator, which is supported by the co-occurrence of the diatom Cocconeis spp.; 2) difflugids are generally good indicators of eutrophication, except for Difflugia protaeiformis; and 3) seasonal differences in water quality trends are reflected in the fossil record on decadal time scales. We show that testate amoebae are highly sensitive to small environmental changes in an oligotrophic lake and exhibit established relationships from eutrophic and mesotrophic lakes as well as new, likely oligotrophic-specific correlations. Correlation coefficients of water quality variables and strains within a species also illustrate gradational relationships, suggesting testate amoebae exhibit ecophenotypic plasticity. Diatom and testate amoeba assemblages categorize modern lakebed sites into four subgroups: 1) benthic macrophyte; 2) high nutrient; 3) high alkalinity; and 4) salt loading assemblages.

Testate (shell-building) amoebae, such as the Arcellinida (Amoebozoa), are useful bioindicators for climate change. Though past work has relied on morphological analyses to characterize Arcellinida diversity, genetic analyses revealed the presence of multiple cryptic species underlying morphospecies. Here, we design and deploy Arcellinida-specific primers for the SSU-rDNA gene to assess the community composition on the molecular level in a pilot study of two samplings from a New England fen: (1) 36-cm horizontal transects and vertical cores; and (2) 26-m horizontal transects fractioned into four size classes (2-10, 10-35, 35-100, and 100-300 μm). Analyses of these data show the following: (1) a considerable genetic diversity within Arcellinida, much of which comes from morphospecies lacking sequences on GenBank; (2) communities characterized by DNA (i.e. active + quiescent) are distinct from those characterized by RNA (i.e. active, indicator of biomass); (3) active communities on the surface tend to be more similar to one another than to core communities, despite considerable heterogeneity; and (4) analyses of communities fractioned by size find some lineages (OTUs) that are abundant in disjunct size categories, suggesting the possibility of life-history stages. Together, these data demonstrate the potential of these primers to elucidate the diversity of Arcellinida communities in diverse habitats.

We evaluated the feasibility of using testate amoebae to infer the quantitative paleohydrology of ombrotrophic mires during their early stages (fen and fen-bog transition) of development. Two transfer functions, one derived from ombrotrophic and the other from minerotrophic mires, were applied to a peat core from an ombrotrophic mire in a taiga region of west Siberia. An ombrotrophic transfer function was applied to the bog stage of mire development. In contrast, ombrotrophic and minerotrophic transfer functions were applied independently to infer water table depth in the fen and fen-bog transition stages. Results of the two approaches for calculating water table depth during the fen and fen-bog transition stages differed by as much as 38 cm for the same peat sample. The main reason for this discrepancy is presence of testate amoeba taxa (e.g. Centropyxis aculeata, Cyclopyxis eurystoma, Cyclopyxis eurystoma v. parvula) in the peat that inhabit both modern ombrotrophic and minerotrophic mires, but differ substantially, in cases by > 20 cm, in terms of their water table depth optima in the ombrotrophic and minerotrophic mire calibration data sets. This difference in inferred water table depth also stems, to a lesser degree, from the fact that the ombrotrophic mire model does not include taxa that inhabited exclusively minerotrophic mires in the fen and fen-bog transition stages. Given these findings, we propose that different models be used for different stages of development, to reconstruct past water table depth in ombrotrophic mires. We recommend use of a model based solely on the ombrotrophic mire data set for the bog stage, and application of a second model based on the minerotrophic mire data set, for the fen and fen-bog transition stages. Application of an ombrotrophic model to the early stages of bog development can yield erroneous paleohydrological reconstructions.

Sediment surface death assemblages of recent testate amoebae (Arcellacea) are reported from nine sites in Lake Superior and Lake Michigan. These are the first profundal sediment-water interface samples of testate amoebae described from either of the Great Lakes which provide valuable insight on deep-water, large-lake assemblages. Centropixid strains were present to abundant in shallower, nearshore sites (up to 66 m water depth). Assemblages at depths >40 m were dominated by Difflugia oblonga “tenuis.” The shallowest sample (26 m) was dominated by Centropyxis aculeata “discoides” and Difflugia oblonga “tenuis.” Over 100 tests per sample were observed from >100 m. Density of tests appears to be constrained by lithology rather than water depth. The deepest site (325 m) yielded low foraminiferal abundances. This pilot study provides a first step towards documenting the distribution of testate amoebae in the Great Lakes.

Protists in caves are scarcely researched. Most cave studies address the diversity of protists, but very little is known about their habitats and spatio-temporal dynamics. The aim of this study was to investigate the diversity and abundance of protists in the Veternica cave in the Medvednica mountain in Croatia on hygropetric and sinter and clay pools during six months. During this study, 47 protists taxa were distinguished belonging to the groups of heterotrophic flagellates, ciliates, heliozoans, stramenopiles and testate and naked amoebae. The highest taxon richness was found at the sinter pool site richest in bats guano (36 taxa). Most diverse were testate amoebae and ciliates. The number of taxa and their abundance differed significantly between the sampling sites. The prospected habitats supported different protist assemblages, proved by ordination analysis. The most distinctive habitat was the hygropetric. Habitat heterogeneity could be attributed to the presence of inorganic and organic sediments at the sites and habitat microhydrology (lotic or lentic system). Kendall’s concordance coefficient showed a good synchronicity between the habitats in the Veternica cave, based on taxon richness and abundance of protists indicating similar seasonal trends. Seasonality in the studied habitats is attributed to the hydro-meteorological conditions in the Veternica cave drainage area. This study is one of the few studies of spatio-temporal diversity and abundance of protists in caves. Despite the similar appearance of small transitional and aquatic habitats in caves, an example of this study showed specific habitat diversification.

Ancestral adaptations to tropical-like climates drive most multicellular biogeography and macroecology. Observational studies suggest that this niche conservatism could also be shaping unicellular biogeography and macroecology, although evidence is limited to Acidobacteria and testate amoebae. We tracked the phylogenetic signal of this niche conservatism in far related and functionally contrasted groups of common soil protists (Bacillariophyta, Cercomonadida, Ciliophora, Euglyphida and Kinetoplastida) along a humid but increasingly cold elevational gradient in Switzerland. Protist diversity decreased, and the size of the geographic ranges of taxa increased with elevation and associated decreasing temperature (climate), which is consistent with a macroecological pattern known as the Rapoport effect. Bacillariophyta exhibited phylogenetically overdispersed communities assembled by competitive exclusion of closely related taxa with shared (conserved) niches. By contrast, Cercomonadida, Ciliophora, Euglyphida and Kinetoplastida exhibited phylogenetically clustered communities assembled by habitat filtering, revealing the coexistence of closely related taxa with shared (conserved) adaptations to cope with the humid but temperate to cold climate of the study site. Phylobetadiversity revealed that soil protists exhibit a strong phylogenetic turnover among elevational sites, suggesting that most taxa have evolutionary constraints that prevent them from colonizing the colder and higher sites of the elevation gradient. Our results suggest that evolutionary constraints determine how soil protists colonize climates departing from warm and humid conditions. We posit that these evolutionary constraints are linked to an ancestral adaptation to tropical-like climates, which limits their survival in exceedingly cold sites. This niche conservatism possibly drives their biogeography and macroecology along latitudinal and altitudinal climatic gradients.

This study aimed to reconstruct the climatic moisture conditions of the Mid- Russian Upland through the Holocene. Surface moisture conditions in the study region were inferred from published pollen records from the Klukva peatland, in the north-west of the Mid-Russian Upland. Three climatic indices were derived from previously- published reconstructions of mean annual temperature and precipitation: the Climate Moisture Index, the Aridity Index and the Budyko Dryness Index. A simple modeling approach to reconstruct annual potential evapotranspiration and net radiation was developed and used to estimate the indices for different periods of the Holocene. The moisture indices were compared with independent proxies of climate moisture such as peatland surface wetness, reconstructed from testate amoebae and regional fire activity, reconstructed from charcoal. Results show that the surface moisture conditions in the study region were characterized by large variability. Periods of mild temperature and moderately wet conditions were followed by dry periods, which resulted in significant changes in palaeoenvironments. The method developed for calculation of potential evapotranspiration and indices of surface moisture conditions could be a useful tool for climate reconstructions. Our results demonstrate the detailed and nuanced palaeoclimate data which can be derived from pollen data.

With the effects of global warming becoming ever more obvious, biodiversity conservation is facing severe challenges. Currently, a deeper understanding the mechanisms of the effects of warming on sensitive species has become an important topic in aquatic biodiversity and ecological management. Our study first overcame the “challenge” for a sensitive indicator species (Netzelia tuberspinifera, an endemic testate amoeba species in East Asia) of culturing under laboratory conditions, and then explored its molecular response mechanisms to warming using transcriptomic analysis. Our data indicate that temperature mainly drove the geographical and seasonal variation of N. tuberspinifera populations. Transcriptomic results indicate that when the temperature is 25 °C, it triggers molecular processes related with cell division, test formation and general biomass increase. However, once the temperature exceeds 40 °C, N. tuberspinifera is unable to survive. Following from these results, the distribution of N. tuberspinifera might expand towards higher altitude or latitude regions under global warming. For the first time, our study showed direct evidence for sensitive protozoa species that presents a very narrow adaptation mechanism to local climate. Our work provides fundamental data for regional biodiversity conservation and scientific reference in subtropical and tropical waterbodies.

The salinisation of many coastal ecosystems is underway and is expected to continue into the future because of sea-level rise and storm intensification brought about by the changing climate. However, the response of soil microbes to increasing salinity conditions within coastal environments is poorly understood, despite their importance for nutrient cascading, carbon sequestration and wider ecosystem functioning. Here, we demonstrate deterioration in the productivity of a top-tier microbial group (testate amoebae) with increasing coastal salinity, which we show to be consistent across phylogenetic groups, salinity gradients, environment types and latitude. Our results show that microbial changes occur in the very early stages of marine inundation, presaging more radical changes in soil and ecosystem function and providing an early warning of coastal salinisation that could be used to improve coastal planning and adaptation.

The studies on the marine and freshwater testate amoebae of the Bulgarian Black Sea littoral and some related coastal brackish lakes are briefly reviewed. So far, a total of 184 species and subspecies of testate amoebae from 18 families and 45 genera from orders of Arcellinida and Euglyphida were published in national and international journals. The underground waters of the Bulgarian marine sand supralittoral are better studied than the related continental lakes. A total of about 45 species of marine interstitial testate amoebae are known, so far, and a big part of them were for the first time described from the Black Sea littoral. It’s interesting to note the presence in the marine underground waters of the Black Sea littoral of many freshwater testate amoebae also, considered by us as eurybionts. That is due of the low and variable salinity of the littoral Black Sea waters during the year. The presence of some psammobiotic testate amoebae as Psammonobiotus lineare and Corythionella georgiana in some related brackish lakes is also of ecological interest. The general conclusion of the present synthesis is that the testate amoebae fauna of the Bulgarian Black Sea coast and the related with it many brackish and freshwater littoral lakes is few known yet and need more active researches.

The first data on the species diversity of testate amoebae of the Coco River in the provinces of Quang Nam and Da Nang (Vietnam) are presented. A total of 55 species and subspecies of testate amoebae belonging to nine genera and six families have been identified in 28 samples. Species diversity of testate amoebae in plankton is higher than in benthic samples. Centropyxis aculeata (64.3%), Netzelia wailesi (39.3%), Difflugia acuminata (32.1%), Arcella discoides scutelliformis (28.6%), and Lesquereusia modesta (28.6%) are characterized by the highest frequency of occurrence. Difflugia (25), Arcella (12), Centropyxis (5), and Netzelia (4) are the most species-rich genera. The species accumulation curve based on the entire dataset is unsaturated and is described by the equation y = 12.56N0.46. The average species richness of testate amoebae per sample in plankton (13.0 ± 3.1) is statistically higher than in benthic samples (1.8 ± 1.5) (p < 0.001). The result of the redundancy analysis shows that the studied hydrochemical water parameters (temperature, pH, dissolved oxygen, electrical conductivity, and salinity) explain only 31.6% of the variation of testate amoeba diversity; the first and second axes explain 11 and 10.2% of this variation, respectively.

An analytical overview is presented of the geographical distribution of two testate amoebae of the genera Hoogenraadia and Planhoogenraadia belonging to the Gondwana-tropical group, in the Oriental biogeographic area and Primorskii krai of the Far East. It is shown that some species of these genera occur on the territory of the Sikhote-Alin Nature Reserve and on the islands of Honshu and Hokkaido (Japan), territories belonging to the southeastern part of the Palearctic. Taking into account the geographical distribution of this group of Protozoa, it is proposed to refine the southeastern border of the Palearctic in the Far East area.

Testate amoebae are a group of free-living heterotrophic protists that have an organic shell or test and play a very good role as bioindicators in the ecological monitoring of environment. Inspite of the importance the percentage contribution of free living protozoans recorded from the Himalayan landscape is only about 12% of the total free living protozoans of India. This portrays a meagre diversity of species from such a highly diversified ecosystem of Himalaya and the true diversity may be far above the recorded number of species. In this study it is herewith reporting two species of testate amoebae viz., Assulina quadratum Van Oye, 1958 and Cyclopyxis leidy Couteaux et Chardez, 1981 for the first time from India from Sangla Valley, Himachal Pradesh. Key words: Assulina quadratum, Cyclopyxis leidy, bioindicator protists, moss-dwelling testate amoebae, soil protists, new biogeographic records, Sangla Valley, Himachal Pradesh, India.

Globally, lakes and reservoirs ecosystems are integral parts of ecological processes. Nevertheless, global warming is rapidly changing their function and sustainability, especially in the populated area of the northern hemisphere. Here we examined testate amoebae community and 10 environmental variables from 51 lakes and reservoirs across China and developed testate amoebae transfer functions for temperature based on both abundance- and biomass-datasets. A total of 169 testate amoebae taxa were identified. Our partial CCA analyses revealed that water temperature explained 5.15% (P = 0.006) and 5.57% (P = 0.008) of the total variance in testate amoebae abundance and biomass, respectively. The WA-PLS was the best model in abundance-based temperature transfer function (RMSEP = 2.87 °С, R2 = 0.60), whereas the MAT proved to be the best model for biomass-based temperature transfer function (RMSEP = 3.34 °С, R2 = 0.67). The application of all models should be carried out with suitable precautions. Our results suggested that freshwater testate amoebae could contribute to a better understanding of the ecological integrity and its vulnerability in inland aquatic environments.

Testate amoebae are important components of benthic communities in freshwater lakes, where they play an essential role in decomposer food webs. They are used widely in paleoecological investigations because of their high taxonomic diversity, well-defined ecological preferences and decay-resistant tests. Studies of testate amoeba assemblages in lake surface sediments are necessary to better understand lake ecosystem function and improve the use of these organisms as bio-indicators in paleoecology. This study explored the use of testate amoebae as proxies for inferring past water level in freshwater lakes, and expanded upon the limited body of research into lake testate amoebae in Russia. Our results indicate that species composition of testate amoeba assemblages in the lakes was typical for such biotopes, with most of the species belonging to the genera Difflugia, Centropyxis, Arcella and Euglypha. Analysis of variation of testate amoebae along a water-depth gradient showed that three assemblage types could be distinguished: shallow-water (0–4.5 m), intermediate-water-depth (4.5–20.5) and deep-water (20.5–33 m). Deep-water assemblages did not contain any unique taxa and were dominated by eurybiotic and planktonic species. Species diversity was highest in the intermediate-water-depth assemblages and lowest in deep-water ones. Although variations in testate amoeba assemblages across water depth in freshwater lakes are complex and context-dependent, there are clear patterns in species composition and diversity, which can be used to infer past lake water levels. Future studies on the effect of water depth on testate amoeba assemblages in diverse types of freshwater lakes should increase the utility of the method.

Proxies that use changes in the composition of ecological communities to reconstruct temporal changes in an environmental covariate are commonly used in paleoclimatology and paleolimnology. Existing methods, such as weighted averaging and modern analog technique, relate compositional data to the covariate in very simple ways, and different methods are seldom compared systematically. We present a new Bayesian model that better represents the underlying data and the complexity in the relationships between species’ abundances and a paleoenvironmental covariate. Using testate amoeba–based reconstructions of water-table depth as a test case, we systematically compare new and existing models in a cross-validation experiment on a large training dataset from North America. We then apply the different models to a new 7500-year record of testate amoeba assemblages from Caribou Bog in Maine and compare the resulting water-table depth reconstructions. We find that Bayesian models represent an improvement over existing methods in three key ways: more complete use of the underlying compositional data, full and meaningful treatment of uncertainty, and clear paths toward methodological improvements. Furthermore, we highlight how developing and systematically comparing methods lead to an improved understanding of the proxy system. This paper focuses on testate amoebae and water-table depth, but the framework and ideas are widely applicable to other proxies based on compositional data.

Methodological advances are essential for robust ecological research. Quantitative reconstructions of environmental conditions using testate amoebae rely on sound taxonomy. While the taxonomy of large species is relatively well resolved, this is not the case for most small taxa (typically45 μm long). In New Zealand, peatlands contain a diversity of both cosmopolitan and characteristic large southern endemic taxa, but also have a high abundance of small taxa. The latter are often lumped into morphotypes reducing their value as ecological indicators. In this study, we demonstrate how (a) lumping small taxa versus splitting them into unique types, and (b) including or excluding them from community analysis influenced their ecological inference. We assessed testate amoeba composition in six peat bogs from New Zealand, three that were moderately-to-highly impacted, and three that were non-impacted. Environmental variables were measured at each sampling site and the surface testate amoeba community patterns and community-environment relationships compared. We found a clear division between impacted and non-impacted sites. Several distinct small taxa were more strongly related to water-table depth and conductivity, while the larger taxa were more correlated to pH. These results show that improved taxonomic resolution of small taxa can provide more informed environmental assessment.

Flow modification of lotic ecosystems is one of the main threats to global freshwater biodiversity. Commonly, and in the river studied here, modification results from hydroelectric dam installation. We evaluated the impacts of damming on zooplankton communities in the Amazonian floodplain of the Madeira River (Porto Velho, Rondonia, Brazil) following construction in 2012 of the run‐of‐river dam of Jirau Hydroelectric Power Plant. Using data sampled between 2009 and 2015, we tested for discontinuities in zooplankton community composition attributable to damming and the naturally occurring flood pulse. The flood pulse remained the main predictor explaining variation in zooplankton community structure even with the installation of the dam on the Madeira River. Despite this, discontinuities for the entire zooplankton community and for the main compositional groups (testate amoebae, rotifers, cladocerans, and copepods) were detected in relation to the dam (pre‐/post‐dam periods), mainly in ebb and low water, and with weaker evidence of dam effects during flood and highwater hydrological periods. A multivariate regression tree explained 9.6% of the variation in zooplankton communities and identified four groups: (1) flood and high‐water periods; (2) low water post‐dam; (3) low water pre‐dam; and (4) ebb hydrological periods. The deviance in each multivariate regression tree node was attributable to variation in eight rotifer, three testate amoeba, and three copepod taxa. Our study demonstrates that the flood pulse, dam construction, and interaction between both of these factors affect zooplankton community structure in the Madeira River. While for many zooplankton community variables, effects occurred mainly during ebb and low‐water periods, some effects were also observed during high water and flood periods. We thus recommend the establishment of a permanent environmental monitoring programme during all hydrological periods in tropical floodplain rivers and the addition of sampling sites downstream from dams. Many rivers in the world are increasingly disrupted by multiple dams, yet little is known of their effects, especially for run‐of‐river dams. Our study identified short‐term impacts of only one run‐of‐river dam on zooplankton communities. More research is needed on the effects of multiple run‐of‐river dams on zooplankton and other biota, especially in tropical floodplain rivers, so that negative effects can be understood and ameliorated.

Difflugia are testate amoebae that use particulate inorganic matter to build a protective shell (generally called a test or theca). Difflugia globulosa were grown both in culture containing only naturally occurring theca-building materials and under conditions where synthetic particles were present also. The presence of monodisperse Stober silica microspheres of 1, 3, and 6 μm in diameter or 4 μm polystyrene spheres dramatically increased the rate of Difflugia growth, and foreign microspheres became the overwhelmingly dominant construction material. Optical and electron microscopy of the 6 μm particle studies revealed that Difflugia construct spherical vase-shaped thecae with strikingly reproducible composition, morphology, and size. Time-lapse photography revealed construction techniques and masonry skills as Difflugia herded particles together, trapped them using phagocytosis, and applied the particles with biocement from inside the developing theca. The reported observations identify taxonomy complications, biomicrofabrication possibilities, and a discrete environmental impact of synthetic particle pollutants.

Compared to boreal or Mediterranean biomes, the influence of fire on peatlands in Central Europe is not well studied. We aim to provide first analysis of statistically significant charcoal-inferred fire events from a peatland from central European lowlands, spanning the period of the last 650 years, and define peatland vegetation and microbial trait-related responses to local fire events. Here, we reconstructed regional and local fire activity from Bagno Kusowo bog (Poland) using high-resolution microscopic charcoal and macroscopic charcoal and its morphotypes, inferring past fire regimes using numeric analyses. We compared fire data with extra-local (pollen) and local (plant macrofossils, testate amoebae (TA) and their trait composition) proxies. Our data show that within the chronological uncertainties, regional fires recorded in the peat core coincide with historically-documented fires. Macroscopic charcoal analysis suggests 3–8 local fire events, while fire frequency varied between 0 and 2 events/1000 years. Wood charcoal was dominant throughout the profile, pointing to forest fires in close proximity to the peatland. Local fire activity was the most intensive in the 17th century, when the water table was at its lowest. The abundance of Sphagnum spp. declined, whereas vascular plants, mixotrophs and TA with proteinaceous shells were significantly positively correlated to fire. Xenosomes were significantly negatively correlated to fires, and they responded to water table lowering. We show that the peatlands’ vegetation recovered from low-intensity and short-lasting disturbances and, to some extent, maintained “pristine” local vegetation cover with Sphagnum as the dominant taxon. TA traits common before disturbances, mainly mixotrophs and TA with proteinaceous shells, temporarily re-appeared after fire. We conclude that TA communities in peatlands are good bioindicators of disturbances.

The study of climatic dynamics that affects the territories with the main concentration of agricultural production in Siberia is complicated by the lack of suffciently long-term instrumental observations of changes in climatic parameters. Investigations of such natural archives as lake and peat sediments, which are widespread in Western Siberia help to solve this problem. Paleopalynological studies, accompanied by the results of additional paleoecological research methods, namely multi proxy paleoecological studies, provide valuable information on the dynamics of the biogeocoenotic cover of the Earth at various levels of its organization, allowing to link geomorphology, soils, vegetation, air currents, climate, as well as biocenoses at different levels of their organization from the microscopic world to geographic zoning. One of the least paleogeographically studied regions is the vast territory of Siberia. We performed a multi-proxy paleoecological investigation of isolated peat massif Krugloe mire (56o53'01.44''N, 84o34'43.08''E) located in the eastern outskirts of the Great Vasyugan mire on the terrace of the Bakhchar river ( See Fig. 1 ) by methods of spore-pollen, testate amoebae (rhizopod), macrofossil peat analyses and microcharcoal analysis to study past environmental and climatic changes. Using the results of performed spore-pollen analysis of the peat section, a spore-pollen diagram was constructed ( See Fig. 3 ). Two radiocarbon dates were obtained for study section ( See Table 1 ). In this research we revealed that sedimentation (frst, mineral and, then, peat deposition) on the peat massif began 5320 cal. yrs ago and had continued to the present day. We visually distinguished nine local pollen zones in the spore-pollen diagram reflecting nine stages in the development of regional vegetation ( See Table 2 ). Based on available radiocarbon dates using the Bacon program (See Fig. 2), we calculated the age of pollen zones, and that of the corresponding changes in regional and local vegetation. Also based on pollen data using Bukreeva’s formula (1991), calculated by multivariate statistical analysis of a large number of modern pollen spectra and corresponding climatic parameters, we reconstructed the dynamics of the annual amount of precipitation ( See Fig. 5 ). Due to the performed research, we found out that during the existence of the mire, the vegetation cover of the study area changed from steppe mixed-wormwood communities to birch forest-steppe with areas of rich-herb meadows and then to thick southern taiga with cedar-birch and birch-cedar forests. We discovered that a signifcant decline in the role of cedar, fr and spruce in the study area started about 800 years ago. During the Little Ice Age (LIA) on the pollen diagram of Krugloe mire, an increase in the abundance of wormwood ( Artemisia ) pollen was noted. It is possible that it reflects the global increase in the role of steppe vegetation in the region due to the forming of a more continental climate in the central regions of Eurasia. An alternative hypothesis supposes that an increase in Artemisia pollen may indicate the beginning of anthropogenic impact on the vegetation cover in the study area intensifed during the LIA. At the same time, we found out that more arid conditions in the second half of the LIA were noted both in pollen and in testate amoebae complexes ( See Fig. 4 ), which supports the climatic hypothesis. We show that the mire in its endogenous development passed through eutrophic, mesotrophic and oligotrophic stages. The mire development is reflected in macrofossil composition of peat and in pollen of local mire plants. We found out that these stages in the development of the mire coincide with specifc changes in regional vegetation surrounding the mire. For example, transition from the eutrophic stage to the mesotrophic one took place 3130 cal. yrs ago, simultaneously with the spread of thick southern taiga forests on the area of the former birch foreststeppe. In the period of the maximum distribution of Siberian cedar ( Pinus sibirica ) forests in the investigated territory 1300 calendar years ago, the mire passed to the oligotrophic stage of development. We hypothesize that the revealed change in local and regional vegetation was caused by a general increase in the climate humidity in the late Holocene. Our investigation of testate amoebae complexes from the same section showed that their abundance and species composition are largely determined by the endogenous stage of the mire development. But during the oligotrophic stage of the mire development, the complexes of testate amoebae were more sensitive to the centennial and decadal fluctuations in the moisture content of the climate than the local mire vegetation and regional terrestrial vegetation. We established that the content of micro charcoal in peat is maximal in the lower layers of peat. Probably, the abundance of micro charcoal increased largely due to the influence of fres on the mire with peat thickness less than 45 cm. We discovered that the effect of post-fre plant communities on pollen spectra is indicated by the increase in the abundance of Artemisia , Poaceae, Urtica , Filipendula and Thalictrum pollen synchronous to microcharcoal maxima. We assume that an increase in the frequency of fres during initial period of the mire development was also stimulated by a more arid climate at the beginning of the mire development, since the course of the curve of the abundance of micro charcoals mirrors the reconstructed annual precipitation. Paleoecological evidence from Krugloe mire (pollen and testate amoebae) agree in general with the data of other authors for the territory of southern Western Siberia, but show a more detailed picture of the reaction of local and regional elements of biogeocenoses to climatic changes. In some cases, these reactions do not coincide with the data of other researchers. This is observed when we compare our Krugloe mire paleoreconstructions with more distant points of research, located in the steppe zone of West Siberia. We hypothesize that such cases reflect heterochronic moistening of the forest and steppe zones of Siberia. A mismatch occurs more often with less prolonged climatic variations. When more prolonged climatic changes are recorded, both regional and local bioindicators react synchronously in the study area. In general, the dynamics of climate humidity revealed by biological indicators (pollen complexes, testate amoebae complexes, botanical composition of peat, pollen types diversity, microcharcoal), coincides well with the historical evidence given in the work of LG Gumilev (1993), and confrms the hypothesis of heterochronic moistening of the steppe and forest zones. The paper contains 5 Figures, 2 Tables and 37 References.

We investigated the ecology and paleoecology of testate amoebae in peatlands of the Colombian páramo to assess the use of testate amoebae as paleoenvironmental indicators. Objectives were to (1) identify environmental controls on testate amoebae, (2) develop transfer functions for paleoenvironmental inference, and (3) examine testate amoebae in a Holocene peat core and compare our findings with other proxy records. Results from 96 modern samples indicate that testate amoebae are sensitive to pH and surface moisture, and cross-validation of transfer functions indicates potential for paleoenvironmental applications. Testate amoebae from the Triunfo Peatland in the Central Cordillera provided a proxy record of pH and water-table depth for the late Holocene, and inferred changes were correlated with peat C/N measurements during most of the record. Comparison with a lake-level reconstruction suggests that at least the major testate amoeba–inferred changes were driven by climate. Our work indicates that testate amoebae are useful paleoenvironmental indicators in high-elevation tropical peatlands.

Paleoecological records suggest that growing season length and/or cloudiness may affect peatland carbon accumulation and testate amoeba-based environmental reconstructions, highlighting a need to understand how light intensity affects microbial communities. We shaded plots on two peatlands for two years to examine effects on testate amoeba communities, the relative abundance of mixotrophic and heterotrophic testate amoebae, transfer-function performance, and δ13C values of two species of mixotrophic testate amoebae. Surprisingly, relative abundance of mixotrophic species increased in shade, although compositional changes did not affect transfer-function performance. Shading did not affect δ13C values of Hyalosphenia papilio and Heleopera sphagni, which ranged from -23.5 to -19.6‰ and -23.2 to -19.2‰, respectively. These δ13C values were higher than those of potential food sources and lower than literature-derived values for Chlorella, the zoochlorellae inhabiting mixotrophic testate amoebae. δ13C values thus suggest that these mixotrophic species obtain some carbon from Chlorella, although coupled dietary and isotope studies are needed to quantify this contribution. More research is needed to assess impacts of light variability on peatland microbial communities; however, carbon sources are recorded by δ13C values of testate amoebae, indicating potential for studies of carbon cycling and how mixotrophy varies temporally and spatially.

Karst freshwater caves are subterranean habitats characterized by the constant absence of light and relatively small variations of temperature and air humidity. They are mostly food deprived environments, with the exception if large bat colonies are present or if they are intensively supplied with organic matter by sinking rivers. Even though these habitats are often described as harsh, they have enabled the evolution of highly specialized and often endemic animals. The cave eukaryotic micro-organisms, on the other hand, are scarcely researched. The results of research of testate amoebae in the caves of the Dinaric arc detected 23 species, 12 of which were first found in caves. Also, a description of Centropyxis bipilata sp. nov. is presented. This species is clearly distinguished from other described species based on shell size, the presence of two struts and the usually dark ring around the aperture. Testate amoebae were registered on aquatic and terrestrial cave sediments and transitional habitats (like hygropetric and wet walls). The most frequent species within the samples were: Trinema lineare, Cryptodifflugia oviformis and Centropyxis bipilata sp. nov. Maximum diversity of testate amoebae was registered in Ponor Kovači with twenty species. In 24.4 % of the investigated samples microphototrophs were found, implying good surface-subsurface connectivity that could also affect testate amoebae diversity. This research showed that caves are underestimated habitats that can provide us with new data about the testate amoebae biogeography and diversity.

Although it is well established that moisture availability in south-eastern Australia has been decreasing through time recently, the driver(s) of this trend are contentious, and our understanding of any drivers is limited by a relatively short historic record. Testate amoebae have been widely used to reconstruct peatland hydrology in the Northern Hemisphere, but in the Southern Hemisphere research is still needed to assess their proficiency as a palaeohydrological proxy and to develop robust transfer functions. Here we examine the ecology of testate amoebae in several high altitude mires in south-eastern Australia and present the first transfer function for the continent. Euglypha tuberculata type, Centropyxis platystoma type and Assulina muscorum were the most common taxa in our modern samples. Water-table depth was the primary environmental variable determining testate amoebae assemblages and therefore transfer functions were developed for this ecological factor. We found that the performance of various all-species and species-pruned transfer functions were statistically robust, with R2 values of around 0.8 and Root Mean Squared Error of Prediction (RMSEP) values of about 7 cm. All cross-validation methods (leave-one-out RMSEP, cluster-bootstrap RMSEP, segment-wise RMSEP and leave-one-site-out RMSEP from all-species and species-pruned transfer functions) suggested that the Modern Analogue Technique (MAT) was the best performing transfer function, with negligible bias evident from un-even sampling and spatial autocorrelation. We also used a new approach to evaluate the importance of taxa and the performance of our transfer functions using species-pruned methods. Our results suggest that the all-species MAT, with an RMSEP of 5.73 and R2 of 0.86, provides the best reconstruction of water-table depth across our sites in south-eastern Australia.

Large volcanic eruptions may have major impacts on ecosystems through their physical, chemical and climatic affects. These impacts are stochastic and because the largest, most damaging volcanic events have not occurred in the recent past there is considerable interest in past eruptions as an analogue for possible future events. Palaeoecology is an essential tool to understand the environmental consequences of eruptions in the past. Here we review the processes by which volcanic eruptions affect ecosystems, how palaeoecological research can enhance our knowledge of palaeo-volcanic impacts and some of the challenges which such studies face. We focus particularly on tephropalaeoecological studies which address changes in the abundance of microfossils (e.g. pollen, diatoms, testate amoebae) across tephra layers preserved in sediments. In our discussion we stress the importance of impacts from volcanic tephra, volatiles and volcanically-induced climate change, which are likely to be the most spatially extensive impact mechanisms. We highlight the importance of considering the taphonomy of tephra and microfossils when attempting to identify volcanic impacts. We discuss the extent to which it is, and is not, possible to distinguish volcanic impacts from non-volcanic processes and random variability. The focus of this special issue is the Mediterranean and we conclude by discussing the particular issues which may apply in this region, including the availability of suitable archives and preservation conditions.