19 results on '"R Jason Kirby"'
Search Results
2. Discovery of small molecule guanylyl cyclase A receptor positive allosteric modulators
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S. Jeson Sangaralingham, Kanupriya Whig, Satyamaheshwar Peddibhotla, R. Jason Kirby, Hampton E. Sessions, Patrick R. Maloney, Paul M. Hershberger, Heather Mose-Yates, Becky L. Hood, Stefan Vasile, Shuchong Pan, Ye Zheng, Siobhan Malany, and John C. Burnett
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Male ,Multidisciplinary ,Cardiovascular Agents ,Middle Aged ,Biological Sciences ,High-Throughput Screening Assays ,Mice, Inbred C57BL ,Mice ,HEK293 Cells ,Allosteric Regulation ,Cardiovascular Diseases ,cardiovascular system ,Animals ,Humans ,Female ,Myocytes, Cardiac ,Natriuretic Peptides ,Cyclic GMP ,Receptors, Atrial Natriuretic Factor ,Cells, Cultured ,Aged - Abstract
The particulate guanylyl cyclase A receptor (GC-A), via activation by its endogenous ligands atrial natriuretic peptide (ANP) and b-type natriuretic peptide (BNP), possesses beneficial biological properties such as blood pressure regulation, natriuresis, suppression of adverse remodeling, inhibition of the renin-angiotensin-aldosterone system, and favorable metabolic actions through the generation of its second messenger cyclic guanosine monophosphate (cGMP). Thus, the GC-A represents an important molecular therapeutic target for cardiovascular disease and its associated risk factors. However, a small molecule that is orally bioavailable and directly targets the GC-A to potentiate cGMP has yet to be discovered. Here, we performed a cell-based high-throughput screening campaign of the NIH Molecular Libraries Small Molecule Repository, and we successfully identified small molecule GC-A positive allosteric modulator (PAM) scaffolds. Further medicinal chemistry structure–activity relationship efforts of the lead scaffold resulted in the development of a GC-A PAM, MCUF-651, which enhanced ANP-mediated cGMP generation in human cardiac, renal, and fat cells and inhibited cardiomyocyte hypertrophy in vitro. Further, binding analysis confirmed MCUF-651 binds to GC-A and selectively enhances the binding of ANP to GC-A. Moreover, MCUF-651 is orally bioavailable in mice and enhances the ability of endogenous ANP and BNP, found in the plasma of normal subjects and patients with hypertension or heart failure, to generate GC-A–mediated cGMP ex vivo. In this work, we report the discovery and development of an oral, small molecule GC-A PAM that holds great potential as a therapeutic for cardiovascular, renal, and metabolic diseases.
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- 2021
3. Abstract ND09: The discovery and characterization of CFT8634: A potent and selective degrader of BRD9 for the treatment of SMARCB1-perturbed cancers
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Katrina L. Jackson, Roman V. Agafonov, Mark W. Carlson, Prasoon Chaturvedi, David Cocozziello, Kyle Cole, Richard Deibler, Scott J. Eron, Andrew Good, Ashley A. Hart, Minsheng He, Christina S. Henderson, Hongwei Huang, Marta Isasa, R. Jason Kirby, Linda Lee, Michelle Mahler, Moses Moustakim, Christopher G. Nasveschuk, Michael Palmer, Laura L. Poling, Roy M. Pollock, Matthew Schnaderbeck, Stan Spence, Gesine K. Veits, Jeremy L. Yap, Ning Yin, Rhamy Zeid, Adam S. Crystal, Andrew J. Phillips, and Stewart L. Fisher
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Cancer Research ,Oncology - Abstract
Introduction: The chromatin factor BRD9 is a genetic dependency in some cancers, often referred to as SMARCB1-perturbed cancers. Two types of genetic alterations result in SMARCB1 perturbation: SS18-SSX gene fusion and SMARCB1 loss-of-function mutations. In synovial sarcoma, a rare and aggressive soft tissue malignancy comprising approximately 10% of all soft tissue sarcomas, the presence of the SS18-SSX fusion gene drives the disruption of SMARCB1 function and leads to a synthetic lethal dependence on BRD9. In SMARCB1-null solid tumors, for example malignant rhabdoid tumors (MRT), poorly differentiated chordomas, and epithelioid sarcomas, the absence of SMARCB1 protein results in a similar BRD9 dependence. Thus, in SMARCB1-perturbed cancers, including synovial sarcoma and SMARCB1-null cancers, degradation of BRD9 is hypothesized to result in an anticancer effect. CFT8634 is an orally bioavailable heterobifunctional degrader that induces ternary complex formation with BRD9 and an E3 ligase, leading to the ubiquitination of BRD9 and its subsequent degradation by the proteasome. Results: Here we describe the chemical structure of CFT8634 and an overview of the medicinal chemistry path leading to its discovery. In vitro, CFT8634 promotes rapid, potent, deep, and selective degradation of BRD9 with a half-maximal degradation concentration (DC50) of 2 nM in a synovial sarcoma cell line. In long-term growth assays, CFT8634 is effective at impairing cell growth in a concentration-dependent manner specifically in SMARCB1-perturbed contexts. In vivo, oral dosing of CFT8634 in xenograft models of SMARCB1-perturbed cancers leads to robust and dose-dependent degradation of BRD9, which translates to significant and dose-dependent inhibition of tumor growth in preclinical xenograft models. Conclusion: The preclinical data presented herein support the clinical development of CFT8634 for the treatment of synovial sarcoma and SMARCB1-null tumors. Citation Format: Katrina L. Jackson, Roman V. Agafonov, Mark W. Carlson, Prasoon Chaturvedi, David Cocozziello, Kyle Cole, Richard Deibler, Scott J. Eron, Andrew Good, Ashley A. Hart, Minsheng He, Christina S. Henderson, Hongwei Huang, Marta Isasa, R. Jason Kirby, Linda Lee, Michelle Mahler, Moses Moustakim, Christopher G. Nasveschuk, Michael Palmer, Laura L. Poling, Roy M. Pollock, Matthew Schnaderbeck, Stan Spence, Gesine K. Veits, Jeremy L. Yap, Ning Yin, Rhamy Zeid, Adam S. Crystal, Andrew J. Phillips, Stewart L. Fisher. The discovery and characterization of CFT8634: A potent and selective degrader of BRD9 for the treatment of SMARCB1-perturbed cancers [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr ND09.
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- 2022
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4. Abstract ND13: The discovery and characterization of CFT7455: A potent and selective degrader of IKZF1/3 for the treatment of relapsed/refractory multiple myeloma
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James A. Henderson, Scott J. Eron, Andrew Good, R Jason Kirby, Samantha Perino, Roman V. Agafonov, Prasoon Chaturvedi, Bradley Class, David Cocozziello, Ashley A. Hart, Christina S. Henderson, Marta Isasa, Brendon Ladd, Matt Schnaderbeck, Michelle Mahler, Adam S. Crystal, Roy M. Pollock, Christopher G. Nasveschuk, Andrew J. Phillips, Stewart L. Fisher, and David A. Proia
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Cancer Research ,Oncology - Abstract
Introduction: Ikaros family zinc finger protein 1 and 3 (IKZF1/3) are essential transcription factors (TF) for terminal differentiation of B and T cells. Depletion of IKZF1/3 inhibits the growth of multiple myeloma (MM) cells, confirming their dependency on IKZF1/3. IMiDs (lenalidomide, pomalidomide) are effective therapies for treatment of MM and promote degradation of IKZF1/3 via their interaction with CRL4-CRBN E3 ligase. However, most patients treated with lenalidomide or pomalidomide eventually develop progressive disease due to acquired resistance, underscoring the unmet medical need. CFT7455 is a novel IKZF1/3 degrader optimized for high binding affinity to cereblon (CRBN), rapid and deep IKZF1/3 degradation, and potent dose-dependent efficacy in vivo. Results: A series of novel benzoimidazolone-based CRBN ligands with potent binding affinity were discovered and their binding modes were informed by CRBN co-crystal structures. Although the benzoimidazolone-based CRBN binders did not exhibit IKZF1/3 degradation activity, structural insights into their unique binding modes and knowledge of the IKZF1/3 degradation pharmacophore were combined to enable identification of a novel benzoisoindolone-based ligand that exhibited a 10-fold potency increase in biochemical CRBN binding and a 30-fold potency increase in H929 MM cell growth inhibition when compared to lenalidomide. Additional rounds of structure-based drug design, degradation and phenotypic profiling led to the discovery of CFT7455, a highly potent, selective and orally bioavailable degrader of IKZF1/3. CFT7455 demonstrated an 800 and 1600-fold improvement in CRBN binding compared to pomalidomide in biochemical and cellular NanoBRET assays, respectively. In H929 MM cells expressing HiBiT-tagged IKZF1, CFT7455 induced >75% degradation of IKZF1 within 1.5 hrs. The high binding affinity and degradation catalysis shown with CFT7455 enabled potent antiproliferative activity across a panel of MM cell lines, as well as H929 cells made resistant to IMiDs. In vivo, CFT7455 catalyzed deep and durable degradation of IKZF3, translating into potent antitumor activity in multiple myeloma xenograft models. CFT7455 also retained its activity in models resistant or insensitive to clinically approved IMiDs as single agent or in combination with standard of care agent dexamethasone. Conclusion: Overall, CFT7455 is a next generation IKZF1/3 degrader, with improved potency and anticancer efficacy in preclinical models compared to existing IMiDs. These features make CFT7455 an exciting drug candidate, as a single agent or for use in combination. CFT7455 is currently being studied in a Ph1 clinical trial. Citation Format: James A. Henderson, Scott J. Eron, Andrew Good, R Jason Kirby, Samantha Perino, Roman V. Agafonov, Prasoon Chaturvedi, Bradley Class, David Cocozziello, Ashley A. Hart, Christina S. Henderson, Marta Isasa, Brendon Ladd, Matt Schnaderbeck, Michelle Mahler, Adam S. Crystal, Roy M. Pollock, Christopher G. Nasveschuk, Andrew J. Phillips, Stewart L. Fisher, David A. Proia. The discovery and characterization of CFT7455: A potent and selective degrader of IKZF1/3 for the treatment of relapsed/refractory multiple myeloma [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr ND13.
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- 2022
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5. Discovery of small molecule antagonists of chemokine receptor CXCR6 that arrest tumor growth in SK-HEP-1 mouse xenografts as a model of hepatocellular carcinoma
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Satyamaheshwar Peddibhotla, R. Jason Kirby, Siobhan Malany, E. Hampton Sessions, Eliot Sugarman, Camilo J. Morfa, Layton H. Smith, Patrick R. Maloney, David B. Terry, Daniela B. Divlianska, Anthony B. Pinkerton, and Paul Hershberger
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Chemokine ,Carcinoma, Hepatocellular ,Receptor expression ,Clinical Biochemistry ,Transplantation, Heterologous ,Drug Evaluation, Preclinical ,Pharmaceutical Science ,Mice, SCID ,01 natural sciences ,Biochemistry ,Article ,Proinflammatory cytokine ,Small Molecule Libraries ,Chemokine receptor ,Inhibitory Concentration 50 ,Mice ,Structure-Activity Relationship ,Mice, Inbred NOD ,Cell Line, Tumor ,Drug Discovery ,Animals ,Humans ,Receptor ,Molecular Biology ,CXCL16 ,Receptors, CXCR6 ,biology ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Liver Neoplasms ,Ligand (biochemistry) ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Cell culture ,Cancer research ,biology.protein ,Molecular Medicine ,Female ,Azabicyclo Compounds ,Signal Transduction - Abstract
The chemokine system plays an important role in mediating a proinflammatory microenvironment for tumor growth in hepatocellular carcinoma (HCC). The CXCR6 receptor and its natural ligand CXCL16 are expressed at high levels in HCC cell lines and tumor tissues and receptor expression correlates with increased neutrophils in these tissues contributing to poor prognosis in patients. Availability of pharmacologcal tools targeting the CXCR6/CXCL16 axis are needed to elucidate the mechanism whereby neutrophils are affected in the tumor environment. We report the discovery of a series of small molecules with an exo-[3.3.1]azabicyclononane core. Our lead compound 81 is a potent (EC50 = 40 nM) and selective orally bioavailable small molecule antagonist of human CXCR6 receptor signaling that significantly decreases tumor growth in a 30-day mouse xenograft model of HCC.
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- 2019
6. Abstract LB007: CFT7455: A novel, IKZF1/3 degrader that demonstrates potent tumor regression in IMiD-resistant multiple myeloma (MM) xenograft models
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Scott J. Eron, Roy M. Pollock, Adam S. Crystal, James A. Henderson, Prasoon Chaturvedi, Christina S. Henderson, Samantha Perino, Stewart L. Fisher, Matt Schnaderbeck, Marta Isasa, Ashley A. Hart, Christopher G. Nasveschuk, Andrew C. Good, Roman V. Agafonov, R. Jason Kirby, Bradley Class, David Cocozziello, Michelle Mahler, David A. Proia, Andrew J. K. Phillips, and Brendon Ladd
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Cancer Research ,Chemistry ,Cereblon ,Cancer ,Pharmacology ,medicine.disease ,Pomalidomide ,Oncology ,In vivo ,medicine ,Progressive disease ,Multiple myeloma ,Dexamethasone ,medicine.drug ,Lenalidomide - Abstract
Introduction Ikaros family zinc finger protein 1 and 3 (IKZF1/3) are essential transcription factors (TF) for terminal differentiation of B and T cells. Depletion of IKZF1/3 in MM cells inhibits growth, confirming their dependency on IKZF1/3. IMiDs (lenalidomide[len], pomalidomide[pom]) are effective therapies for treatment of MM and promote degradation of IKZF1/3 via their interaction with CRL4-CRBN E3 ligase. Most patients treated with len or pom eventually develop progressive disease due to acquired resistance, underscoring an unmet medical need. CFT7455 is a novel IKZF1/3 degrader optimized for high affinity cereblon (CRBN) binding, rapid IKZF1/3 degradation, and potent in vivo efficacy. Results CFT7455 demonstrated an 800 to 1600-fold improvement in CRBN binding compared to pom in biochemical and cellular NanoBRET assays, respectively. In H929 MM cells expressing HiBiT-tagged IKZF1, CFT7455 induced >75% degradation of IKZF1 within 1.5 hr. The high binding affinity and degradation catalysis shown with CFT7455 enabled potent antiproliferative activity across a panel of MM cell lines as well as H929 cells made resistant to IMiDs. In RPMI-8226 MM mice xenografts, CFT7455 (0.1 mg/kg/day) resulted in deep, durable degradation of IKZF3 (21% and 9.5% of vehicle levels at 4 and 24 hr, respectively). Protein levels for IRF4, an essential TF in MM, declined over 7 days with daily CFT7455 treatment to 8% of vehicle levels. Dose dependent efficacy ranged from 0.003-0.1 mg/kg/day, with tumor regression evident at doses ≥0.01 mg/kg/day. Pom was inactive in this model at a human equivalent dose (3 mg/kg/day), with no observed tumor shrinkage in these mice following 17 days of dosing. Switching pom treatment to CFT7455 (0.1 mg/kg/day) on Day 18 led to tumor regression in 67% of animals on Day 28 and 100% tumor regression on Day 35, demonstrating that CFT7455 penetrates large tissues and is efficacious in rapidly growing, IMiD resistant tumors. In the H929 tumor xenograft model, administration of CFT7455 (0.1 mg/kg/day) promoted tumor regression (95% tumor growth inhibition by 7 days); dosing was stopped after 21 days. On Day 63, half the tumors remained below their starting tumor volume. Additionally, CFT7455 demonstrated durable tumor regression in the aggressive MM1.S systemic MM tumor model. In mice bearing RPMI-8226 xenograft tumors, the combination of CFT7455 (QD) and dexamethasone (QW) was more active, and demonstrated a significant survival improvement, compared to either agent alone. Conclusions CFT7455 is a highly potent, catalytic degrader of IKZF1/3, with marked antitumor activity as a single agent and in combination with dexamethasone. Importantly, CFT7455 retains activity in models resistant or insensitive to IMiDs. These results warrant investigation of CFT7455 as a therapeutic approach for MM and a clinical study is planned. Citation Format: James A. Henderson, R. Jason Kirby, Samantha Perino, Roman V. Agafonov, Prasoon Chaturvedi, Bradley Class, David Cocozziello, Scott J. Eron, Andrew Good, Ashley A. Hart, Christina Henderson, Marta Isasa, Brendon Ladd, Matt Schnaderbeck, Michelle Mahler, Roy M. Pollock, Adam S. Crystal, Christopher G. Nasveschuk, Andrew J. Phillips, Stewart L. Fisher, David A. Proia. CFT7455: A novel, IKZF1/3 degrader that demonstrates potent tumor regression in IMiD-resistant multiple myeloma (MM) xenograft models [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2021; 2021 Apr 10-15 and May 17-21. Philadelphia (PA): AACR; Cancer Res 2021;81(13_Suppl):Abstract nr LB007.
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- 2021
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7. Discovery of Novel Small-Molecule Inducers of Heme Oxygenase-1 That Protect Human iPSC-Derived Cardiomyocytes from Oxidative Stress
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Camilo J. Morfa, Ada Koo, Paul Hershberger, Nadezda Bryan, Kanupriya Whig, Becky Hood, Siobhan Malany, Satayamaheshwar Peddibhotla, E. Hampton Sessions, Patrick R. Maloney, Layton H. Smith, R. Jason Kirby, Kevin Nguyen, and Daniela B. Divlianska
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0301 basic medicine ,Cell Survival ,Phenotypic screening ,Induced Pluripotent Stem Cells ,Myocardial Infarction ,Biology ,medicine.disease_cause ,Protective Agents ,Antioxidants ,Small Molecule Libraries ,03 medical and health sciences ,Structure-Activity Relationship ,medicine ,Myocyte ,Humans ,Myocytes, Cardiac ,Viability assay ,Induced pluripotent stem cell ,Cells, Cultured ,Pharmacology ,Cell biology ,Up-Regulation ,Heme oxygenase ,Transplantation ,Oxidative Stress ,030104 developmental biology ,Biochemistry ,Molecular Medicine ,Stem cell ,Oxidative stress ,Biomarkers ,Heme Oxygenase-1 - Abstract
Oxidative injury to cardiomyocytes plays a critical role in cardiac pathogenesis following myocardial infarction. Transplantation of stem cell-derived cardiomyocytes has recently progressed as a novel treatment to repair damaged cardiac tissue but its efficacy has been limited by poor survival of transplanted cells owing to oxidative stress in the post-transplantation environment. Identification of small molecules that activate cardioprotective pathways to prevent oxidative damage and increase survival of stem cells post-transplantation is therefore of great interest for improving the efficacy of stem cell therapies. This report describes a chemical biology phenotypic screening approach to identify and validate small molecules that protect human-induced pluripotent stem cell cardiomyocytes (hiPSC-CMs) from oxidative stress. A luminescence-based high-throughput assay for cell viability was used to screen a diverse collection of 48,640 small molecules for protection of hiPSC-CMs from peroxide-induced cell death. Cardioprotective activity of "hit" compounds was confirmed using impedance-based detection of cardiomyocyte monolayer integrity and contractile function. Structure-activity relationship studies led to the identification of a potent class of compounds with 4-(pyridine-2-yl)thiazole scaffold. Examination of gene expression in hiPSC-CMs revealed that the hit compound, designated cardioprotectant 312 (CP-312), induces robust upregulation of heme oxygenase-1, a marker of the antioxidant response network that has been strongly correlated with protection of cardiomyocytes from oxidative stress. CP-312 therefore represents a novel chemical scaffold identified by phenotypic high-throughput screening using hiPSC-CMs that activates the antioxidant defense response and may lead to improved pharmacological cardioprotective therapies.
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- 2017
8. Targeting the hydrophobic pocket of autotaxin with virtual screening of inhibitors identifies a common aromatic sulfonamide structural motif
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Robert Bittman, Duane D. Miller, Sandra Nelson, Truc Chi T. Pham, Ryoko Tsukahara, R. Jason Kirby, Renukadevi Patil, Gabor Tigyi, Derek D. Norman, Daniel L. Baker, Abby L. Parrill, William L. Seibel, Sue Chin Lee, James I. Fells, and Ruben Papoian
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chemistry.chemical_classification ,Sulfonamides ,Virtual screening ,Molecular Structure ,Phosphoric Diester Hydrolases ,Chemistry ,Stereochemistry ,Cell Biology ,Ligand (biochemistry) ,Biochemistry ,Article ,Structure-Activity Relationship ,chemistry.chemical_compound ,Enzyme ,Lysophosphatidic acid ,Structure–activity relationship ,Pharmacophore ,Autotaxin ,Structural motif ,Hydrophobic and Hydrophilic Interactions ,Molecular Biology - Abstract
Modulation of autotaxin (ATX), the lysophospholipase D enzyme that produces lysophosphatidic acid, with small-molecule inhibitors is a promising strategy for blocking the ATX-lysophosphatidic acid signaling axis. Although discovery campaigns have been successful in identifying ATX inhibitors, many of the reported inhibitors target the catalytic cleft of ATX. A recent study provided evidence for an additional inhibitory surface in the hydrophobic binding pocket of ATX, confirming prior studies that relied on enzyme kinetics and differential inhibition of substrates varying in size. Multiple hits from previous high-throughput screening for ATX inhibitors were obtained with aromatic sulfonamide derivatives interacting with the hydrophobic pocket. Here, we describe the development of a ligand-based strategy and its application in virtual screening, which yielded novel high-potency inhibitors that target the hydrophobic pocket of ATX. Characterization of the structure-activity relationship of these new inhibitors forms the foundation of a new pharmacophore model of the hydrophobic pocket of ATX.
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- 2014
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9. Development of a Small-Molecule Screening Method for Inhibitors of Cellular Response to Myostatin and Activin A
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Jennifer N. Cash, Sandra Nelson, Ruben Papoian, R. Jason Kirby, William L. Seibel, Elizabeth B. Angerman, Lisa Merck, Matthew D. Wortman, and Thomas B. Thompson
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In silico ,Gene Expression ,Myostatin ,Biology ,Biochemistry ,Analytical Chemistry ,Small Molecule Libraries ,Genes, Reporter ,Gene expression ,Humans ,Computer Simulation ,Growth Substances ,Luciferases, Renilla ,HEK 293 cells ,musculoskeletal system ,Small molecule ,Molecular biology ,Activins ,High-Throughput Screening Assays ,Cell biology ,HEK293 Cells ,biology.protein ,Molecular Medicine ,Signal transduction ,Biotechnology ,Transforming growth factor - Abstract
Myostatin, a member of the transforming growth factor (TGF)-β family of secreted ligands, is a strong negative regulator of muscle growth. As such, therapeutic inhibitors of myostatin are actively being investigated for their potential in the treatment of muscle-wasting diseases such as muscular dystrophy and sarcopenia. Here, we sought to develop a high-throughput screening (HTS) method for small-molecule inhibitors that target myostatin. We created a HEK293 stable cell line that expresses the (CAGA)12-luciferase reporter construct and robustly responds to signaling of certain classes of TGF-β family ligands. After optimization and miniaturization of the assay to a 384-well format, we successfully screened a library of compounds for inhibition of myostatin and the closely related activin A. Selection of some of the tested compounds was directed by in silico screening against myostatin, which led to an enrichment of target hits as compared with random selection. Altogether, we present an HTS method that will be useful for screening potential inhibitors of not only myostatin but also many other ligands of the TGF-β family.
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- 2013
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10. Assessment of drug-induced arrhythmic risk using limit cycle and autocorrelation analysis of human iPSC-cardiomyocyte contractility
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Feng Qi, R. Jason Kirby, Siobhan Malany, Sharangdhar Phatak, and Layton H. Smith
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0301 basic medicine ,Risk ,Computer science ,hERG ,Induced Pluripotent Stem Cells ,Drug Evaluation, Preclinical ,Computational biology ,Toxicology ,Nonlinear dynamical systems ,Contractility ,03 medical and health sciences ,Limit cycle ,medicine ,Humans ,Myocytes, Cardiac ,Cells, Cultured ,Pharmacology ,Proarrhythmia ,Cardiotoxicity ,Arrhythmic risk ,biology ,Autocorrelation ,Computational Biology ,Arrhythmias, Cardiac ,medicine.disease ,Myocardial Contraction ,030104 developmental biology ,biology.protein ,Algorithms ,Software - Abstract
Cardiac safety assays incorporating label-free detection of human stem-cell derived cardiomyocyte contractility provide human relevance and medium throughput screening to assess compound-induced cardiotoxicity. In an effort to provide quantitative analysis of the large kinetic datasets resulting from these real-time studies, we applied bioinformatic approaches based on nonlinear dynamical system analysis, including limit cycle analysis and autocorrelation function, to systematically assess beat irregularity. The algorithms were integrated into a software program to seamlessly generate results for 96-well impedance-based data. Our approach was validated by analyzing dose- and time-dependent changes in beat patterns induced by known proarrhythmic compounds and screening a cardiotoxicity library to rank order compounds based on their proarrhythmic potential. We demonstrate a strong correlation for dose-dependent beat irregularity monitored by electrical impedance and quantified by autocorrelation analysis to traditional manual patch clamp potency values for hERG blockers. In addition, our platform identifies non-hERG blockers known to cause clinical arrhythmia. Our method provides a novel suite of medium-throughput quantitative tools for assessing compound effects on cardiac contractility and predicting compounds with potential proarrhythmia and may be applied to in vitro paradigms for pre-clinical cardiac safety evaluation.
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- 2016
11. Dynamic regulation of sphingosine-1-phosphate homeostasis during development of mouse metanephric kidney
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R. Jason Kirby, Ying Jin, Jian Fu, Debi K. Swertfeger, Jimena Cubillos, and Lois J. Arend
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Physiology ,Phosphatase ,Morphogenesis ,Apoptosis ,Biology ,Kidney ,Mice ,chemistry.chemical_compound ,Pregnancy ,Sphingosine ,medicine ,Animals ,Homeostasis ,Sphingosine-1-phosphate ,urogenital system ,Kinase ,organic chemicals ,Membrane Proteins ,Articles ,Sphingolipid ,Phosphoric Monoester Hydrolases ,Cell biology ,Phosphotransferases (Alcohol Group Acceptor) ,Receptors, Lysosphingolipid ,medicine.anatomical_structure ,chemistry ,Biochemistry ,Female ,lipids (amino acids, peptides, and proteins) ,Lysophospholipids - Abstract
Branching morphogenesis of the metanephric kidney is critically dependent on the delicate orchestration of diverse cellular processes including proliferation, apoptosis, migration, and differentiation. Sphingosine-1-phosphate (S1P) is a potent lipid mediator influencing many of these cellular events. We report increased expression and activity of both sphingosine kinases and S1P phosphatases during development of the mouse metanephric kidney from induction at embryonic day 11.5 to maturity. Sphingosine kinase activity exceeded S1P phosphatase activity in embryonic kidneys, resulting in a net accumulation of S1P, while kinase and phosphatase activities were similar in adult tissue, resulting in reduced S1P content. Sphingosine kinase expression was greater in the metanephric mesenchyme than in the ureteric bud, while the S1P phosphatase SPP2 was expressed at greater levels in the ureteric bud. Treatment of cultured embryonic kidneys with sphingosine kinase inhibitors resulted in a dose-dependent reduction of ureteric bud tip numbers and increased apoptosis. Exogenous S1P rescued kidneys from apoptosis induced by kinase inhibitors. Ureteric bud tip number was unaffected by exogenous S1P in kidneys treated with N, N-dimethylsphingosine, although tip number increased in those treated with d,l- threo-dihydrosphingosine. S1P1 and S1P2 were the predominant S1P receptors expressed in the embryonic kidney. S1P1 expression increased during renal development while expression of S1P2 decreased, and both receptors were expressed predominantly in the metanephric mesenchyme. These results demonstrate dynamic regulation of S1P homeostasis during renal morphogenesis and suggest that differential expression of S1P metabolic enzymes and receptors provides a novel mechanism contributing to the regulation of kidney development.
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- 2009
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12. Rate of gastric emptying influences dietary cholesterol absorption efficiency in selected inbred strains of mice
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R. Jason Kirby, Philip N. Howles, and David Y. Hui
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Male ,medicine.medical_specialty ,Mice, Inbred Strains ,QD415-436 ,Absorption (skin) ,Biochemistry ,Absorption ,Cholesterol, Dietary ,Mice ,chemistry.chemical_compound ,Endocrinology ,Inbred strain ,Internal medicine ,medicine ,Animals ,Medium-chain triglyceride ,intestine ,Triglycerides ,Meal ,Triglyceride ,biology ,Gastric emptying ,Cholesterol ,digestive, oral, and skin physiology ,Cell Biology ,mouse genetics ,Nitric oxide synthase ,NG-Nitroarginine Methyl Ester ,Gastric Emptying ,chemistry ,Gastric Mucosa ,biology.protein ,lipids (amino acids, peptides, and proteins) ,Nitric Oxide Synthase ,medium-chain triglyceride ,stomach ,Oleic Acid - Abstract
This study compared the physiological process of cholesterol absorption in different strains of inbred mice with the goal of identifying novel mechanism(s) by which cholesterol absorption can be controlled. The rate and amount of cholesterol absorption were evaluated based on [14C]cholesterol appearance in plasma after feeding a meal containing [14C]cholesterol and by the percentage of [14C]-cholesterol absorbed over a 24 h period. Results showed that the rate of [14C]cholesterol appearance in plasma was slower in 129P3/J mice than in SJL/J mice. However, more dietary cholesterol was absorbed over a 24 h period by 129P3/J mice than by SJL/J mice. In both strains of mice, cholesterol delivered with medium-chain triglyceride was absorbed less efficiently than cholesterol delivered with olive oil. The strain- and vehicle-dependent differences in cholesterol absorption efficiency correlated negatively with stomach-emptying rates. Furthermore, inhibition of gastric emptying with nitric oxide synthase inhibitor increased cholesterol absorption efficiency in SJL/J mice. These results document that stomach-emptying rate contributes directly to the rate of dietary cholesterol absorption, which is inversely correlated with the total amount of cholesterol absorbed from a single meal. Additionally, genetic factor(s) that influence gastric emptying may be an important determinant of cholesterol absorption efficiency.
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- 2004
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13. Bile Salt-stimulated Carboxyl Ester Lipase Influences Lipoprotein Assembly and Secretion in Intestine
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R. Jason Kirby, Philip N. Howles, David Y. Hui, Patrick Tso, and Shuqin Zheng
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Ceramide ,Very low-density lipoprotein ,Cholesterol ,Triglyceride transport ,Phospholipid ,Cell Biology ,Biochemistry ,chemistry.chemical_compound ,chemistry ,lipids (amino acids, peptides, and proteins) ,Sphingomyelin ,Molecular Biology ,Chylomicron ,Lipoprotein - Abstract
Bile salt-stimulated carboxyl ester lipase (CEL), also called cholesterol esterase, is one of the major proteins secreted by the pancreas. The physiological role of CEL was originally thought to be its mediation of dietary cholesterol absorption. However, recent studies showed no difference between wild type and CEL knockout mice in the total amount of cholesterol absorbed in a single meal. The current study tests the hypothesis that CEL in the intestinal lumen may influence the type of lipoproteins produced. A lipid emulsion containing 4 mm phospholipid, 13.33 mm[3H]triolein, and 2.6 mm[14C]cholesterol in 19 mm taurocholate was infused into the duodenum of lymph fistula CEL(+/+) and CEL(−/−) mice at a rate of 0.3 ml/h. Results showed no difference between CEL(+/+) and CEL(−/−) mice in the rate of cholesterol and triglyceride transport from the intestinal lumen to the lymph. However, CEL(−/−) mice produced predominantly smaller lipoproteins, whereas the CEL(+/+) mice produced primarily large chylomicrons and very low density lipoprotein. The proximal intestine of CEL(−/−) mice was also found to possess significantly less ceramide hydrolytic activity than that present in CEL(+/+) mice. By using Caco2 cells grown on Transwell membranes as a model, sphingomyelinase treatment inhibited the secretion of larger chylomicron-like lipoproteins without affecting total cholesterol secretion. In contrast, the addition of CEL to the apical medium increased the amount of large lipoproteins produced and alleviated the inhibition induced by sphingomyelinase. Taken together, this study identified a novel and physiologically significant role for CEL, namely the promotion of large chylomicron production in the intestine. The mechanism appears to be mediated through CEL hydrolysis of ceramide generated during the lipid absorption process.
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- 2002
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14. Differentiation-dependent expression and localization of the class B type I scavenger receptor in intestine
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David Y. Hui, Sheng F. Cai, Philip N. Howles, and R. Jason Kirby
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cholesterol absorption ,lipid transport ,lipoprotein receptor ,Brush border ,Cellular differentiation ,Ileum ,QD415-436 ,Cell Biology ,Apical membrane ,Biology ,Biochemistry ,Molecular biology ,Jejunum ,Endocrinology ,medicine.anatomical_structure ,Cell culture ,medicine ,Duodenum ,Scavenger receptor - Abstract
The current study used the human Caco-2 cell line and mouse intestine to explore the topology of expression of the class B type I scavenger receptor (SR-BI) in intestinal cells. Results showed that intestinal cells expressed only the SR-BI isoform with little or no expression of the SR-BII variant. The expression of SR-BI in Caco-2 cells is differentiation dependent, with little or no expression in preconfluent undifferentiated cells. Analysis of Caco-2 cells cultured in Transwell porous membranes revealed the presence of SR-BI on both the apical and basolateral cell surface. Immunoblot analysis of mouse intestinal cell extracts demonstrated a gradation of SR-BI expression along the gastrocolic axis of the intestine, with the highest level of expression in the proximal intestine and decreasing to minimal expression levels in the distal intestine. Immunofluorescence studies with SR-BI-specific antibodies also confirmed this expression pattern. Importantly, the immunofluorescence studies also revealed that SR-BI immunoreactivity was most intense in the apical membrane of the brush border in the duodenum. The crypt cells did not show any reactivity with SR-BI antibodies. The localization of SR-BI in the jejunum was found to be different from that observed in the duodenum. SR-BI was present on both apical and basolateral surfaces of the jejunum villus. Localization of SR-BI in the ileum was also different, with little SR-BI detectable on either apical or basolateral membranes. Taken together, these results suggest that SR-BI has the potential to serve several functions in the intestine. The localization of SR-BI on the apical surface of the proximal intestine is consistent with the hypothesis of its possible role in dietary cholesterol absorption, whereas SR-BI present on the basolateral surface of the distal intestine suggests its possible involvement in intestinal lipoprotein uptake.—Cai, S. F., R. J. Kirby, P. N. Howles, and D. Y. Hui. Differentiation-dependent expression and localization of the class B type I scavenger receptor in intestine.
- Published
- 2001
- Full Text
- View/download PDF
15. Hits of a high-throughput screen identify the hydrophobic pocket of autotaxin/lysophospholipase D as an inhibitory surface
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Daniel L. Baker, Renukadevi Patil, James I. Fells, William L. Seibel, Ryoko Tsukahara, Gabor Tigyi, Derek D. Norman, Sandra Nelson, Ruben Papoian, Sue Chin Lee, Abby L. Parrill, R. Jason Kirby, Jianxiong Liu, Robert Bittman, Keng Gat Lim, Duane D. Miller, and Yuko Fujiwara
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Indoles ,Lung Neoplasms ,Phosphodiesterase Inhibitors ,Benzeneacetamides ,Melanoma, Experimental ,Tetrazoles ,Antineoplastic Agents ,chemistry.chemical_compound ,Mice ,Structure-Activity Relationship ,Cell Line, Tumor ,Lysophosphatidic acid ,Animals ,Humans ,Neoplasm Invasiveness ,Pharmacology ,chemistry.chemical_classification ,Sulfonamides ,biology ,Phosphoric Diester Hydrolases ,Active site ,Phosphodiesterase ,Lipid signaling ,Articles ,High-Throughput Screening Assays ,Mice, Inbred C57BL ,Molecular Docking Simulation ,Enzyme ,Hydrazines ,Lysophospholipase ,chemistry ,Biochemistry ,Docking (molecular) ,Benzamides ,Mutation ,biology.protein ,Molecular Medicine ,Autotaxin ,Drug Screening Assays, Antitumor ,Hydrophobic and Hydrophilic Interactions - Abstract
Autotaxin (ATX), a lysophospholipase D, plays an important role in cancer invasion, metastasis, tumor progression, tumorigenesis, neuropathic pain, fibrotic diseases, cholestatic pruritus, lymphocyte homing, and thrombotic diseases by producing the lipid mediator lysophosphatidic acid (LPA). A high-throughput screen of ATX inhibition using the lysophosphatidylcholine-like substrate fluorogenic substrate 3 (FS-3) and ∼10,000 compounds from the University of Cincinnati Drug Discovery Center identified several small-molecule inhibitors with IC50 vales ranging from nanomolar to low micromolar. The pharmacology of the three most potent compounds: 918013 (1; 2,4-dichloro-N-(3-fluorophenyl)-5-(4-morpholinylsulfonyl) benzamide), 931126 (2; 4-oxo-4-{2-[(5-phenoxy-1H-indol-2-yl)carbonyl]hydrazino}-N-(4-phenylbutan-2-yl)butanamide), and 966791 (3; N-(2,6-dimethylphenyl)-2-[N-(2-furylmethyl)(4-(1,2,3,4-tetraazolyl)phenyl)carbonylamino]-2-(4-hydroxy-3-methoxyphenyl) acetamide), were further characterized in enzyme, cellular, and whole animal models. Compounds 1 and 2 were competitive inhibitors of ATX-mediated hydrolysis of the lysophospholipase substrate FS-3. In contrast, compound 3 was a competitive inhibitor of both FS-3 and the phosphodiesterase substrate p-nitrophenyl thymidine 5′-monophosphate. Computational docking and mutagenesis suggested that compounds 1 and 2 target the hydrophobic pocket, thereby blocking access to the active site of ATX. The potencies of compounds 1–3 were comparable to each other in each of the assays. All of these compounds significantly reduced invasion of A2058 human melanoma cells in vitro and the colonization of lung metastases by B16-F10 murine melanoma cells in C57BL/6 mice. The compounds had no agonist or antagonist effects on select LPA or sphingosine 1-phosphate receptors, nor did they inhibit nucleotide pyrophosphatase/phosphodiesterase (NPP) enzymes NPP6 and NPP7. These results identify the molecular surface of the hydrophobic pocket of ATX as a target-binding site for inhibitors of enzymatic activity.
- Published
- 2013
16. Group 1B phospholipase A2-mediated lysophospholipid absorption directly contributes to postprandial hyperglycemia
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Eric Labonte, David Y. Hui, Kevin W. Huggins, April M. Cannon, R. Jason Kirby, and Nicholas M. Schildmeyer
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medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Glucose uptake ,Carbohydrate metabolism ,Intestinal absorption ,Phospholipases A ,Article ,Mice ,Phospholipase A2 ,Internal medicine ,Internal Medicine ,medicine ,Animals ,Humans ,Glycogen synthase ,DNA Primers ,Mice, Knockout ,Glucose tolerance test ,medicine.diagnostic_test ,biology ,Base Sequence ,Metabolism ,Glucose Tolerance Test ,Postprandial Period ,Mice, Inbred C57BL ,Phospholipases A2 ,Postprandial ,Endocrinology ,Intestinal Absorption ,Liver ,Hyperglycemia ,biology.protein ,lipids (amino acids, peptides, and proteins) ,Lysophospholipids - Abstract
Postprandial hyperglycemia is an early indicator of abnormality in glucose metabolism leading to type 2 diabetes. However, mechanisms that contribute to postprandial hyperglycemia have not been identified. This study showed that mice with targeted inactivation of the group 1B phospholipase A2 (Pla2g1b) gene displayed lower postprandial glycemia than that observed in wild-type mice after being fed a glucose-rich meal. The difference was caused by enhanced postprandial glucose uptake by the liver, heart, and muscle tissues as well as altered postprandial hepatic glucose metabolism in the Pla2g1b−/− mice. These differences were attributed to a fivefold decrease in the amount of dietary phospholipids absorbed as lysophospholipids in Pla2g1b−/− mice compared with that observed in Pla2g1b+/+ mice. Elevating plasma lysophospholipid levels in Pla2g1b−/− mice via intraperitoneal injection resulted in glucose intolerance similar to that exhibited by Pla2g1b+/+ mice. Studies with cultured hepatoma cells revealed that lysophospholipids dose-dependently suppressed insulin-stimulated glycogen synthesis. These results demonstrated that reduction of lysophospholipid absorption enhances insulin-mediated glucose metabolism and is protective against postprandial hyperglycemia.
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- 2006
17. Bile salt-stimulated carboxyl ester lipase influences lipoprotein assembly and secretion in intestine: a process mediated via ceramide hydrolysis
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R Jason, Kirby, Shuqin, Zheng, Patrick, Tso, Philip N, Howles, and David Y, Hui
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Male ,Lipoproteins ,Ceramides ,Amidohydrolases ,Carboxylesterase ,Cell Line ,Bile Acids and Salts ,Enzyme Activation ,Intestines ,Mice, Inbred C57BL ,Mice ,Ceramidases ,Animals ,Humans ,Intestinal Mucosa ,Carboxylic Ester Hydrolases - Abstract
Bile salt-stimulated carboxyl ester lipase (CEL), also called cholesterol esterase, is one of the major proteins secreted by the pancreas. The physiological role of CEL was originally thought to be its mediation of dietary cholesterol absorption. However, recent studies showed no difference between wild type and CEL knockout mice in the total amount of cholesterol absorbed in a single meal. The current study tests the hypothesis that CEL in the intestinal lumen may influence the type of lipoproteins produced. A lipid emulsion containing 4 mm phospholipid, 13.33 mm [(3)H]triolein, and 2.6 mm [(14)C]cholesterol in 19 mm taurocholate was infused into the duodenum of lymph fistula CEL(+/+) and CEL(-/-) mice at a rate of 0.3 ml/h. Results showed no difference between CEL(+/+) and CEL(-/-) mice in the rate of cholesterol and triglyceride transport from the intestinal lumen to the lymph. However, CEL(-/-) mice produced predominantly smaller lipoproteins, whereas the CEL(+/+) mice produced primarily large chylomicrons and very low density lipoprotein. The proximal intestine of CEL(-/-) mice was also found to possess significantly less ceramide hydrolytic activity than that present in CEL(+/+) mice. By using Caco2 cells grown on Transwell membranes as a model, sphingomyelinase treatment inhibited the secretion of larger chylomicron-like lipoproteins without affecting total cholesterol secretion. In contrast, the addition of CEL to the apical medium increased the amount of large lipoproteins produced and alleviated the inhibition induced by sphingomyelinase. Taken together, this study identified a novel and physiologically significant role for CEL, namely the promotion of large chylomicron production in the intestine. The mechanism appears to be mediated through CEL hydrolysis of ceramide generated during the lipid absorption process.
- Published
- 2001
18. Bile salt-stimulated carboxyl ester lipase (CEL) influences lipoprotein assembly and secretion in intestine: A process mediated via ceramide hydrolysis
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R. Jason Kirby, Shu Qin Zheng, Patrick Tso, and David Y. Hui
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chemistry.chemical_classification ,Ceramide ,biology ,Hepatology ,Gastroenterology ,Salt (chemistry) ,chemistry.chemical_compound ,Hydrolysis ,chemistry ,Biochemistry ,Scientific method ,biology.protein ,Secretion ,Lipase ,Lipoprotein - Published
- 2001
- Full Text
- View/download PDF
19. Differentiation-dependent expression of the class B Type I scavenger receptor in intestinal cells
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R. Jason Kirby, David Y. Hui, Sheng F. Cai, and Philip N. Howles
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Hepatology ,Chemistry ,Interleukin-21 receptor ,Gastroenterology ,Scavenger receptor ,Interleukin 1 receptor, type I ,Molecular biology - Published
- 2000
- Full Text
- View/download PDF
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