Biomarker and stable isotopic analysis of lipid residues from perforated pottery vessels from sixth millennium bc Europe are consistent with these vessels having been used for making cheese, a low-lactose dairy product with digestion and storage advantages for the prehistoric lactose-intolerant farming communities. Dairying was an important innovation in early agriculture — despite the fact that the first dairy farmers were unable to metabolize lactose. One way of making milk more palatable to the lactose intolerant is to turn it into cheese, a process that involves straining the fat-rich curds from the lactose-containing whey. In this study Richard Evershed and colleagues report the presence of organic residues on pottery shards from enigmatic pottery vessels produced widely in settlements of the earliest farmers in northern Europe about 7,500 years ago. The vessels exhibit numerous millimetre-sized holes, which were postulated to be cheese strainers in 1984 by Peter Bogucki, a co-author on this current paper. That idea is now supported by the chemical evidence. The introduction of dairying was a critical step in early agriculture, with milk products being rapidly adopted as a major component of the diets of prehistoric farmers and pottery-using late hunter-gatherers1,2,3,4,5. The processing of milk, particularly the production of cheese, would have been a critical development because it not only allowed the preservation of milk products in a non-perishable and transportable form, but also it made milk a more digestible commodity for early prehistoric farmers6,7,8,9,10. The finding of abundant milk residues in pottery vessels from seventh millennium sites from north-western Anatolia provided the earliest evidence of milk processing, although the exact practice could not be explicitly defined1. Notably, the discovery of potsherds pierced with small holes appear at early Neolithic sites in temperate Europe in the sixth millennium bc and have been interpreted typologically as ‘cheese-strainers’10, although a direct association with milk processing has not yet been demonstrated. Organic residues preserved in pottery vessels have provided direct evidence for early milk use in the Neolithic period in the Near East and south-eastern Europe, north Africa, Denmark and the British Isles, based on the δ13C and Δ13C values of the major fatty acids in milk1,2,3,4. Here we apply the same approach to investigate the function of sieves/strainer vessels, providing direct chemical evidence for their use in milk processing. The presence of abundant milk fat in these specialized vessels, comparable in form to modern cheese strainers11, provides compelling evidence for the vessels having being used to separate fat-rich milk curds from the lactose-containing whey. This new evidence emphasizes the importance of pottery vessels in processing dairy products, particularly in the manufacture of reduced-lactose milk products among lactose-intolerant prehistoric farming communities6,7.