78 results on '"Guido Pintacuda"'
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2. Electronic structure of Yb(III)[CH(SiMe3)2]3 from magnetic resonance spectroscopies
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Anton Ashuiev, Florian Allouche, José P. Carvalho, Kevin J. Sanders, Matthew P. Conley, Daniel Klose, Giuseppe Lapadula, Michael Wörle, Dirk Baabe, Marc D. Walter, Andrew J. Pell, Christophe Copéret, Gunnar Jeschke, Guido Pintacuda, and Richard A. Andersen
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Characterization of paramagnetic compounds, in particular regarding the detailed conformation and electronic structure, remains a challenge - still today it often relies solely on the use of X-ray crystallography, thus limiting the access to electronic structure information. This is particularly true for lanthanide elements that are often associated with peculiar structural and electronic features in relation to their partially filled f -shell. Here, we showcase the use of state-of-the-art magnetic resonance spec- troscopy (EPR and solid-state NMR) and computational approaches as well as magnetic susceptibility measurements to determine the structure of a paramagnetic Yb(III) alkyl complex, Yb(III)[CH(SiMe3)2]3, that features a notable structure according to X-ray crystallography. Each of these techniques revealed specific information about the geometry and electronic structure of the complex; taken together, they provide a detailed understanding of this paramagnetic compound. Namely, this complex displays a three-centre-two-electron Yb-γ-Me-β–Si secondary metal-ligand interaction, whose NMR spectroscopic signature was acquired for the first time for a lanthanide paramagnetic species. The electronic configuration of Yb(III)[CH(SiMe3)2]3 is demonstrated to be close to the one of the free Yb(III) ion, with the partially filled f -shell of the Yb atom having little influence on its bonding properties and with minimal delocalization of f -electron density from Yb to the directly bonded carbons.
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- 2023
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3. Untersuchung von Dynamik, Struktur und Magnetismus von schaltbaren Metall‐organischen Gerüstverbindungen mittels 1 H‐detektierter MAS‐NMR‐Spektroskopie
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Florian M. Wisser, Guido Pintacuda, Arthur L. Lejeune, Stefan Kaskel, Irena Senkovska, Sebastian Ehrling, and Jan Blahut
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Materials science ,010405 organic chemistry ,General Medicine ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences - Published
- 2021
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4. Development of a Borane–(Meth)acrylate Photo‐Click Reaction
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Bérengère Aubry, Rémi Canterel, Muriel Lansalot, Elodie Bourgeat‐Lami, Aissam Airoudj, Bernadette Graff, Céline Dietlin, Fabrice Morlet‐Savary, Jan Blahut, Ladislav Benda, Guido Pintacuda, Emmanuel Lacôte, and Jacques Lalevée
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General Medicine - Published
- 2021
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5. Struktur eines an virusähnliche Partikel gekoppelten Antigens: Analyse einer Impfstoff‐Formulierung
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Guido Pintacuda, Anna Kirsteina, Andris Kazaks, Kristaps Jaudzems, Kaspars Tars, Janis Bogans, Olivier Ouari, Gilles Casano, Anne Lesage, and Tobias Schubeis
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0303 health sciences ,03 medical and health sciences ,010405 organic chemistry ,Chemistry ,General Medicine ,01 natural sciences ,030304 developmental biology ,0104 chemical sciences - Published
- 2021
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6. Backbone assignment of crystalline E. coli maltose binding protein
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Tobias Schubeis, Jan Stanek, Guido Pintacuda, Centre de RMN à très hauts champs de Lyon (CRMN), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), University of Warsaw (UW), and École normale supérieure - Lyon (ENS Lyon)-Université Claude Bernard Lyon 1 (UCBL)
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0303 health sciences ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,biology ,Accession number (library science) ,Chemistry ,Chemical shift ,030303 biophysics ,Resonance (chemistry) ,[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,Biochemistry ,Maltose-Binding Proteins ,NMR spectra database ,03 medical and health sciences ,Crystallography ,Maltose-binding protein ,Microcrystalline ,Molecular size ,Structural Biology ,biology.protein ,Molecule ,030304 developmental biology - Abstract
International audience; The E.coli maltose binding protein (MBP) is a 42.5 kDa molecule widely employed in many biotechnology applications. Because of its molecular size, it has become the main model system for the development of solution NMR methods adapted to large biomolecular targets. Here, we report virtually complete (~90%) backbone resonance assignments obtained on a microcrystalline sample of MBP with 1 H-detected solidstate NMR at fast (>100 kHz) magic-angle spinning. We additionally present the detailed description of the methodology employed for the preparation of the sample and the acquisition and analysis of the NMR spectra. The chemical shifts, obtained with a single uniformly 15 N, 13 C-labelled and fully-protonated sample and about two weeks on a 800 MHz NMR spectrometer, have been deposited to the BMRB under the accession number 50089.
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- 2021
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7. Production and Preparation of Isotopically Labeled Human Membrane Proteins in Pichia pastoris for Fast-MAS-NMR Analyses
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Lina, Barret, Tobias, Schubeis, Valérie, Kugler, Lucile, Guyot, Guido, Pintacuda, and Renaud, Wagner
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Magnetic Resonance Spectroscopy ,Saccharomycetales ,Humans ,Membrane Proteins ,Nuclear Magnetic Resonance, Biomolecular ,Pichia - Abstract
Membrane proteins (MPs) comprise about one-third of the human proteome, playing critical roles in many physiological processes and associated disorders. Consistently, they represent one of the largest classes of targets for the pharmaceutical industry. Their study at the molecular level is however particularly challenging, resulting in a severe lack of structural and dynamic information that is hindering their detailed functional characterization and the identification of novel potent drug candidates.Magic Angle Spinning (MAS) NMR is a reliable and efficient method for the determination of protein structures and dynamics and for the identification of ligand binding sites and equilibria. MAS-NMR is particularly well suited for MPs since they can be directly analysed in a native-like lipid bilayer environment but used to require aggravating large amounts of isotope enriched material. The frequent toxicity of human MP overexpression in bacterial cultures poses an additional hurdle, resulting in the need for alternative (and often more costly) expression systems. The recent development of very fast (up to 150 kHz) MAS probes has revolutionized the field of biomolecular solid-state NMR enabling higher spectral resolution with significant reduction of the required sample, rendering eukaryotic expression systems cost-effective.Here is presented a set of accessible procedures validated for the production and preparation of eukaryotic MPs for Fast-MAS
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- 2022
8. Multimodal Response to Copper Binding in Superoxide Dismutase Dynamics
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Lyndon Emsley, Guido Pintacuda, Roberta Pierattelli, Tobias Schubeis, Marta Bonaccorsi, Hugh R W Dannatt, Michael J. Knight, Tanguy Le Marchand, Loïc Salmon, Isabella C. Felli, Centre de RMN à très hauts champs de Lyon (CRMN), École normale supérieure - Lyon (ENS Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Université de Florence, Università degli Studi di Firenze = University of Florence [Firenze] (UNIFI), Ecole Polytechnique Fédérale de Lausanne (EPFL), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), and Università degli Studi di Firenze = University of Florence (UniFI)
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Models, Molecular ,Magnetic Resonance Spectroscopy ,Protein Conformation ,[SDV]Life Sciences [q-bio] ,chemistry.chemical_element ,Zinc ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,Superoxide dismutase ,Colloid and Surface Chemistry ,Protein structure ,Metalloproteins ,Side chain ,Humans ,[CHIM]Chemical Sciences ,Histidine ,Binding site ,Binding Sites ,biology ,Superoxide Dismutase ,Chemistry ,Amyotrophic Lateral Sclerosis ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Copper ,0104 chemical sciences ,Kinetics ,Magnetic Fields ,Biophysics ,biology.protein ,Protein Multimerization ,Crystallization - Abstract
International audience; Copper/zinc superoxide dismutase (SOD) is a homodimeric metalloenzyme which has been extensively studied as a benchmark for structure-function relationships in proteins, in particular because of its implication in the familial form of the neurodegenerative disease amyotrophic lateral sclerosis. Here, we investigate microcrystalline preparations of two differently metallated forms of SOD, namely the fully mature functional Cu I ,Zn state and the E,Zn-SOD state in which the Cu site is empty. By using solid-state NMR with fast magic-angle spinning (MAS) at high magnetic fields (1 H Larmor frequency of 800-1000 MHz), we quantify motions spanning a dynamic range from ns to ms. We determine that metal ion uptake does not act as a rigidification element but as a switch redistributing motional processes on different timescales, with coupling of the dynamics of histidine sidechains and those of remote key backbone elements of the protein.
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- 2020
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9. Author response: Mg2+-dependent conformational equilibria in CorA and an integrated view on transport regulation
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Tone Bengtsen, Marta Bonaccorsi, Nicolai Tidemand Johansen, Andreas Haahr Larsen, Frederik Grønbæk Tidemand, Martin Cramer Pedersen, Pie Huda, Jens Berndtsson, Tamim Darwish, Nageshewar Rao Yepuri, Anne Martel, Thomas Günther Pomorski, Andrea Bertarello, Mark Sansom, Mikaela Rapp, Ramon Crehuet, Tobias Schubeis, Kresten Lindorff-Larsen, Guido Pintacuda, and Lise Arleth
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- 2022
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10. Heteronuclear decoupling with Rotor-Synchronized Phase-Alternated Cycles
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Andrea Simion, Tobias Schubeis, Tanguy Le Marchand, Mihai Vasilescu, Guido Pintacuda, Anne Lesage, Claudiu Filip, Centre de RMN à très hauts champs de Lyon (CRMN), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), and Babes-Bolyai University [Cluj-Napoca] (UBB)
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[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,Radio Waves ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,Anisotropy ,General Physics and Astronomy ,Physical and Theoretical Chemistry - Abstract
A new heteronuclear decoupling pulse sequence is introduced, dubbed ROtor-Synchronized Phase-Alternated Cycles (ROSPAC). It is based on a partial refocusing of the coherences (spin operator products or cross-terms) [Filip et al., J. Mag. Reson. 176, 2 (2005)] responsible for transverse spin-polarization dephasing, on the irradiation of a large pattern of radio-frequencies, and on a significant minimization of the cross-effects implying 1H chemical-shift anisotropy. Decoupling efficiency is analyzed by numerical simulations and experiments and compared to that of established decoupling sequences [swept-frequency two-pulse phase-modulated (TPPM), TPPM, small phase incremental alternation (SPINAL), refocused Continuous-wave (CWApa), and Rotor-Synchronized Hahn-Echo pulse train (RS-HEPT)]. It was found that ROSPAC offers good 1H offset robustness for a large range of chemical shifts and low radio-frequency (RF) powers, and performs very well in the ultra-fast magic-angle spinning (MAS) regime, where it is almost independent from RF power and permits it to avoid rotary-resonance recoupling conditions ( v1 = nv r, n = 1, 2). It has the advantage that only the pulse lengths require optimization and has a low duty cycle in the pulsed decoupling regime. The efficiency of the decoupling sequence is demonstrated on a model microcrystalline sample of the model protein domain GB1 at 100 kHz MAS at 18.8 T.
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- 2022
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11. Protein‐NMR‐Resonanzzuordnung ohne Spektralanalyse: automatisierte Festkörper‐Projektionsspektroskopie in 5D (SO‐APSY)
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Tanguy Le Marchand, Wolfgang Bermel, Claire Ollier, Jan Stanek, Henry W. Orton, Guido Pintacuda, Isabella C. Felli, Diane Cala de Paepe, Dylan Foucaudeau, Adrian W. Draney, Sebastian Hiller, Tobias Schubeis, and Roberta Pierattelli
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Materials science ,010405 organic chemistry ,General Medicine ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences - Published
- 2019
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12. DNP NMR of biomolecular assemblies
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Tatyana Polenova, Kristaps Jaudzems, Guido Pintacuda, Hartmut Oschkinat, Anne Lesage, Centre de RMN à très hauts champs de Lyon (CRMN), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Department of Chemistry and Biochemistry, University of Delaware [Newark], Leibniz Forschungsinstitut für Molekulare Pharmakolgie = Leibniz Institute for Molecular Pharmacology [Berlin, Allemagne] (FMP), Leibniz Association, and École normale supérieure - Lyon (ENS Lyon)-Université Claude Bernard Lyon 1 (UCBL)
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0303 health sciences ,Magnetic Resonance Spectroscopy ,Materials science ,Free Radicals ,Molecular Structure ,[SDV]Life Sciences [q-bio] ,030302 biochemistry & molecular biology ,Temperature ,Membrane Proteins ,Nanotechnology ,Nuclear magnetic resonance spectroscopy ,03 medical and health sciences ,Solid-state nuclear magnetic resonance ,Unpaired electron ,Structural Biology ,Microwave irradiation ,Magic angle spinning ,[CHIM]Chemical Sciences ,Capsid Proteins ,Microwaves ,Peptides ,Polarization (electrochemistry) ,Nuclear Magnetic Resonance, Biomolecular ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology - Abstract
Dynamic Nuclear Polarization (DNP) is an effective approach to alleviate the inherently low sensitivity of solid-state NMR (ssNMR) under magic angle spinning (MAS) towards large-sized multi-domain complexes and assemblies. DNP relies on a polarization transfer at cryogenic temperatures from unpaired electrons to adjacent nuclei upon continuous microwave irradiation. This is usually made possible via the addition in the sample of a polarizing agent. The first pioneering experiments on biomolecular assemblies were reported in the early 2000s on bacteriophages and membrane proteins. Since then, DNP has experienced tremendous advances, with the development of extremely efficient polarizing agents or with the introduction of new microwaves sources, suitable for NMR experiments at very high magnetic fields (currently up to 900 MHz). After a brief introduction, several experimental aspects of DNP enhanced NMR spectroscopy applied to biomolecular assemblies are discussed. Recent demonstration experiments of the method on viral capsids, the type III and IV bacterial secretion systems, ribosome and membrane proteins are then described.
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- 2019
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13. Mg
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Nicolai Tidemand, Johansen, Marta, Bonaccorsi, Tone, Bengtsen, Andreas Haahr, Larsen, Frederik Grønbæk, Tidemand, Martin Cramer, Pedersen, Pie, Huda, Jens, Berndtsson, Tamim, Darwish, Nageshewar Rao, Yepuri, Anne, Martel, Thomas Günther, Pomorski, Andrea, Bertarello, Mark, Sansom, Mikaela, Rapp, Ramon, Crehuet, Tobias, Schubeis, Kresten, Lindorff-Larsen, Guido, Pintacuda, and Lise, Arleth
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Models, Molecular ,Magnetic Resonance Spectroscopy ,Models, Chemical ,Protein Conformation ,Biological Transport ,Magnesium ,Molecular Dynamics Simulation ,Cation Transport Proteins - Abstract
The CorA family of proteins regulates the homeostasis of divalent metal ions in many bacteria, archaea, and eukaryotic mitochondria, making it an important target in the investigation of the mechanisms of transport and its functional regulation. Although numerous structures of open and closed channels are now available for the CorA family, the mechanism of the transport regulation remains elusive. Here, we investigated the conformational distribution and associated dynamic behaviour of the pentameric Mg
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- 2021
14. Spectroscopic Signature and Structure of Active Sites in Ziegler-Natta Polymerization Catalysts revealed by Electron Paramagnetic Resonance
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Anton Ashuiev, Matthieu Humbert, David Gajan, Sebastien Norsic, Jan Blahut, Keith Searles, Daniel Klose, Anne Lesage, Guido Pintacuda, Jean Raynaud, Vincent Monteil, Christophe Copéret, and Gunnar Jeschke
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inorganic chemicals - Abstract
Despite decades of extensive studies, the atomic-scale structure of the active sites in heterogeneous Ziegler-Natta (ZN) catalysts, one of the most important processes of the chemical industry, remains elusive and a matter of debate. In the present work, the structure of “active sites” of ZN catalysts in the absence of ethylene, referred to as “dormant active sites”, is elucidated from magnetic resonance experiments, carried out on samples reacted with increasing amounts of BCl3 so as to enhance the concentration of active sites and observe clear spectroscopic signatures. Using EPR and NMR spectroscopies, in particular 2D HYSCORE experiments complemented by DFT calculations, we show that the activated ZN catalysts contain bimetallic alkyl-Ti(III),Al species whose amount is directly linked to the polymerization activity of MgCl2-supported Ziegler-Natta catalysts. This connects those spectroscopic signatures to the active species formed in the presence of ethylene, and enables us propose an ethylene polymerization mechanism on the observed bimetallic alkyl-Ti(III),Al species based on DFT computations
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- 2021
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15. Structural Analysis of an Antigen Chemically Coupled on Virus-Like Particles in Vaccine Formulation
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Kaspars Tars, Olivier Ouari, Anna Kirsteina, Guido Pintacuda, Gilles Casano, Andris Kazaks, Kristaps Jaudzems, Anne Lesage, Janis Bogans, and Tobias Schubeis
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Bioconjugation ,biology ,010405 organic chemistry ,Chemistry ,Manufacturing process ,Hemagglutinin (influenza) ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Catalysis ,Virus ,0104 chemical sciences ,Solid-state nuclear magnetic resonance ,Virus-like particle ,Antigen ,biology.protein ,Biophysics ,Vaccines, Virus-Like Particle ,Antigens, Viral ,Nuclear Magnetic Resonance, Biomolecular ,Alpha helix - Abstract
Structure determination of adjuvant-coupled antigens is essential for rational vaccine development but has so far been hampered by the relatively low antigen content in vaccine formulations and by their heterogeneous composition. Here we show that magic-angle spinning (MAS) solid-state NMR can be used to assess the structure of the influenza virus hemagglutinin stalk long alpha helix antigen, both in its free, unformulated form and once chemically coupled to the surface of large virus-like particles (VLPs). The sensitivity boost provided by high-field dynamic nuclear polarization (DNP) and proton detection at fast MAS rates allows to overcome the penalty associated with the antigen dilution. Comparison of the MAS NMR fingerprints between the free and VLP-coupled forms of the antigen provides structural evidence of the conservation of its native fold upon bioconjugation. This work demonstrates that high-sensitivity MAS NMR is ripe to play a major role in vaccine design, formulation studies, and manufacturing process development.
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- 2020
16. Spectroscopic Signature and Structure of Active Centers in Ziegler-Natta Polymerization Catalysts revealed by Electron Paramagnetic Resonance
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Jan Blahut, Gunnar Jeschke, Anton Ashuiev, Vincent Monteil, Guido Pintacuda, Sébastien Norsic, Christophe Copéret, Jean Raynaud, Matthieu Humbert, Keith Searles, Anne Lesage, Daniel Klose, David Gajan, Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon, Centre de RMN à très hauts champs de Lyon (CRMN), École normale supérieure - Lyon (ENS Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), and École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL)
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inorganic chemicals ,Ethylene ,Keith ,020209 energy ,Anton ,02 engineering and technology ,Natta ,sebastien ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Catalysis ,law.invention ,chemistry.chemical_compound ,gajan ,law ,david ,et al. (2020): Spectroscopic Signature and Structure of Active Centers in Ziegler-Natta Polymerization Catalysts revealed by Electron Paramagnetic Resonance. ChemRxiv. Preprint ,0202 electrical engineering, electronic engineering, information engineering ,[CHIM]Chemical Sciences ,mathieu ,Ziegler–Natta catalyst ,Electron paramagnetic resonance ,Bimetallic strip ,biology ,blahut ,humber ,Polyethylene ,biology.organism_classification ,3. Good health ,0104 chemical sciences ,jean ,Searles ,chemistry ,Polymerization ,CC BY-NC-ND 4.0 Citation information: Ashuiev ,norsic - Abstract
Despite decades of extensive studies, the atomic-scale structure of the active sites in heterogeneous Ziegler-Natta (ZN) catalysts, one of the most important processes of the chemical industry, remains elusive and a matter of debate. In the present work, the structure of “active sites” of ZN catalysts in the absence of ethylene, referred to as “dormant active sites”, is elucidated from magnetic resonance experiments, carried out on samples reacted with increasing amounts of BCl3 so as to enhance the concentration of active sites and observe clear spectroscopic signatures. Using EPR and NMR spectroscopies, in particular 2D HYSCORE experiments complemented by DFT calculations, we show that the activated ZN catalysts contain bimetallic alkyl-Ti(III),Al species whose amount is directly linked to the polymerization activity of MgCl2-supported Ziegler-Natta catalysts. This connects those spectroscopic signatures to the active species formed in the presence of ethylene, and enables us propose an ethylene polymerization mechanism on the observed bimetallic alkyl-Ti(III),Al species based on DFT computations
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- 2020
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17. Spectroscopic Signature and Structure of Active Centers in Ziegler-Natta Polymerization Catalysts revealed by Electron Paramagnetic Resonance
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Anton Ashuiev, Matthieu Humbert, Sebastien Norsic, Jan Blahut, David Gajan, Keith Searles, Daniel Klose, Anne Lesage, Guido Pintacuda, Jean Raynaud, Christophe Copéret, and Gunnar Jeschke
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inorganic chemicals - Abstract
Despite decades of extensive studies, the atomic-scale structure of active sites in heterogeneous Ziegler-Natta (ZN) catalysts remains elusive and a matter of debate. Here, the structure of polymerization ZN catalysts is elucidated from magnetic resonance experiments carried out on samples reacted with increasing amounts of BCl3 so as to enhance the concentration of active sites and observe clear spectroscopic signatures. Notably, we show that EPR and NMR spectroscopy of the activated ZN catalysts enables to observe paramagnetic species whose amount increases in conjunction with the catalytic activity. The joint application of 2D HYSCORE experiments and DFT calculations reveals the presence of bimetallic alkyl-Ti(III),Al complexes that are assigned to the catalytic centers of MgCl2-supported Ziegler-Natta catalysts
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- 2020
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18. Paramagnetic Cobalt(II) Complexes with Cyclam Derivatives: Toward
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Jan, Blahut, Ladislav, Benda, Jan, Kotek, Guido, Pintacuda, and Petr, Hermann
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In order to develop novel, more efficient, and/or selective contrast agents for magnetic resonance imaging (MRI), different
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- 2020
19. Resonance assignment of the outer membrane protein AlkL in lipid bilayers by proton-detected solid-state NMR
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Loren B. Andreas, Tom S. Schwarzer, Guido Pintacuda, Tobias Schubeis, Kathrin Castiglione, Tanguy Le Marchand, Jan Stanek, Kumar Tekwani Movellan, Centre de Résonance Magnetique Nucleaire (CRMN), Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-École Supérieure Chimie Physique Électronique de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-École Supérieure Chimie Physique Électronique de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Inst Biochem Engn, Technische Universität Munchen - Université Technique de Munich [Munich, Allemagne] (TUM), Max Planck Institute for Biophysical Chemistry (MPI-BPC), and Max-Planck-Gesellschaft
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0303 health sciences ,Nitrogen Isotopes ,Chemistry ,Pseudomonas putida ,Proton Magnetic Resonance Spectroscopy ,030303 biophysics ,Lipid Bilayers ,Membrane Proteins ,Nuclear magnetic resonance spectroscopy ,Biochemistry ,Alkane transport ,Small molecule ,Protein Structure, Secondary ,[SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biophysics ,03 medical and health sciences ,Beta barrel ,Membrane protein ,Bacterial Proteins ,Structural Biology ,Biophysics ,Amino Acid Sequence ,Bacterial outer membrane ,Lipid bilayer ,Protein secondary structure ,030304 developmental biology - Abstract
International audience; Most commonly small outer membrane proteins, possessing between 8 and 12 β-strands, are not involved in transport but fulfill diverse functions such as cell adhesion or binding of ligands. An intriguing exception are the 8-stranded β-barrel proteins of the OmpW family, which are implicated in the transport of small molecules. A representative example is AlkL from Pseudomonas putida GPoI, which functions as a passive importer of hydrophobic molecules. This role is of high interest with respect to both fundamental biological understanding and industrial applications in biocatalysis, since this protein is frequently utilized in biotransformation of alkanes. While the transport function of AlkL is generally accepted, a controversy in the transport mechanism still exists. In order to address this, we are pursuing a structural study of recombinantly produced AlkL reconstituted in lipid bilayers using solid-state NMR spectroscopy. In this manuscript we present 1 H, 13 C and 15 N chemical shift assignments obtained via a suite of 3D experiments employing high magnetic fields (1 GHz and 800 MHz) and the latest magic-angle spinning (MAS) approaches at fast (60-111) kHz rates. We additionally analyze the secondary structure prediction in comparison with those of published structures of homologous proteins.
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- 2020
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20. Broadband MAS NMR spectroscopy in the low-power limit
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Sebastian Wegner, Clare P. Grey, Kevin J. Sanders, Guido Pintacuda, Andrew J. Pell, Biological Solid-State NMR Methods - Méthodes de RMN à l'état solide en biologie, Institut des Sciences Analytiques (ISA), Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Department of Materials and Environmental Chemistry - Arrhenius Laboratory, Bruker BioSpin GmbH, D-76287 Rheinstetten, Germany, affiliation inconnue, University of Cambridge - Chemistry Department, This work was financially supported by the People Program of the European Union’s FP7 (FP7-PEOPLE-2012-ITN No. 317127 'pNMR'), the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant No. 648974 'P-MEM-NMR'), and the Agence Nationale de la Recherche (Grant No. ANR-15-CE29-0025-01). KJS would like to thank Prof. Philip J. Grandinetti for fruitful discussions about adiabatic pulses., European Project: 317127,EC:FP7:PEOPLE,FP7-PEOPLE-2012-ITN,PNMR(2013), European Project: 648974,H2020,ERC-2014-CoG,P-MEM-NMR(2015), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), and University of Cambridge [UK] (CAM)
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Physics ,Sideband ,Ultrafast MAS ,General Physics and Astronomy ,Biasing ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Paramagnetic NMR ,broadband NMR ,Paramagnetism ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,Broadband ,Li-ion battery ,Waveform ,Physical and Theoretical Chemistry ,Atomic physics ,0210 nano-technology ,Adiabatic process ,Anisotropy ,Adiabatic pulses ,Spinning - Abstract
International audience; We investigate the performance of broadband adiabatic inversion pulses in the high-power (short high-powered adi-abatic pulse, SHAP) and low-power (single-sideband-selective adiabatic pulse, S 3 AP) RF regimes on a spin system subjected to large anisotropic interactions. We show by combined experimental results and spin dynamics simulations that when the magic-angle spinning rate exceeds 100 kHz S 3 APs begin outperforming SHAPs. This is especially true for low-gamma nuclei, such as 6 Li in paramagnetic Li-ion battery materials. Finally, we show how S 3 APs can be improved by combining multiple waveforms sweeping over multiple sidebands simultaneously, in order to produce inverted sideband profiles free from intensity biasing.
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- 2018
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21. MAS dependent sensitivity of different isotopomers in selectively methyl protonated protein samples in solid state NMR
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Kai Xue, Daniela Lalli, Benita Koch, Carina Motz, Zdenek Tosner, Guido Pintacuda, Bernd Reif, Riddhiman Sarkar, Harbin Engineering University (HRBEU), Institut des sciences et d'ing:nierie chimiques (ISIC), Ecole Polytechnique Fédérale de Lausanne (EPFL), Centre de RMN à très hauts champs de Lyon (CRMN), École normale supérieure - Lyon (ENS Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Department of Chemistry [Munich], Technische Universität Munchen - Université Technique de Munich [Munich, Allemagne] (TUM), and École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL)
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0301 basic medicine ,Proton ,Analytical chemistry ,Protonation ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Methylation ,Sensitivity and Specificity ,Isotopomers ,Matrix (chemical analysis) ,src Homology Domains ,03 medical and health sciences ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,Nuclear Magnetic Resonance, Biomolecular ,ComputingMilieux_MISCELLANEOUS ,Spectroscopy ,Spectrometer ,Chemistry ,Resolution (electron density) ,Spectrin ,Deuterium ,0104 chemical sciences ,Solid State Nmr ,Magic Angle Spinning (mas) ,Selective Deuteration ,Ch3 Labelling ,Methyl Isotopomers ,Microcrystalline Proteins ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,NMR spectra database ,030104 developmental biology ,Solid-state nuclear magnetic resonance ,Protons - Abstract
Sensitivity and resolution together determine the quality of NMR spectra in biological solids. For high-resolution structure determination with solid-state NMR, proton-detection emerged as an attractive strategy in the last few years. Recent progress in probe technology has extended the range of available MAS frequencies up to above 100 kHz, enabling the detection of resolved resonances from sidechain protons, which are important reporters of structure. Here we characterise the interplay between MAS frequency in the newly available range of 70-110 kHz and proton content on the spectral quality obtainable on a 1 GHz spectrometer for methyl resonances. Variable degrees of proton densities are tested on microcrystalline samples of the alpha-spectrin SH3 domain with selectively protonated methyl isotopomers (CH3, CH2D, CHD2) in a perdeuterated matrix. The experimental results are supported by simulations that allow the prediction of the sensitivity outside this experimental frequency window. Our results facilitate the selection of the appropriate labelling scheme at a given MAS rotation frequency.
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- 2019
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22. A Straightforward Access to Stable, 16 Valence-electron Phosphine-Stabilized Fe
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Benjamin, Burcher, Kevin J, Sanders, Ladislav, Benda, Guido, Pintacuda, Erwann, Jeanneau, Andreas A, Danopoulos, Pierre, Braunstein, Hélène, Olivier-Bourbigou, and Pierre-Alain R, Breuil
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Article - Abstract
The use of the dialkene divinyltetramethyldisiloxane (dvtms) allows easy access to the reactive 16 valence-electron complexes [Fe(0)(L-L)(dvtms)], (L-L) = dppe (1,2-bis(diphenylphosphino)ethane), (1), dppp (1,2-bis(diisopropylphosphino)propane), (2), pyNMeP((i)Pr)(2) (N-(diisopropylphosphino)-N-methylpyridin-2-amine), (4), dipe (1,2-bis(diisopropylphosphino)ethane), (5), and [Fe(0)(L)(2)(dvtms)], L = PMe(3), (3), by a mild reductive route using AlEt(2)(OEt) as reducing agent. In contrast, by the same methodology, the 18 valence-electron complexes [Fe(0)(L-L)(2)(ethylene)], (L-L) = dppm (1,2-bis(diphenylphosphino)methane), 6, (L-L) = dppa (1,2-bis(diphenylphosphino)amine) 7 or (L-L)=dppe, 8, were obtained, which do not contain dvtms. In addition, a combined DFT and solid-state paramagnetic NMR methodology is introduced for the structure determination of 5. A comparative study of the reactivity of 1,2,4-6 and 8 with 3-hexyne highlights emerging mechanistic implications for C-C coupling reactions using these complexes as catalysts.
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- 2019
23. Straightforward Access to Stable, 16-Valence-Electron Phosphine-Stabilized Fe0 Olefin Complexes and Their Reactivity
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Benjamin Burcher, Helene Olivier-Bourbigou, Pierre Braunstein, Kevin J. Sanders, Erwann Jeanneau, Andreas A. Danopoulos, Guido Pintacuda, Ladislav Benda, and Pierre-Alain Breuil
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Olefin fiber ,Ethylene ,010405 organic chemistry ,Reducing agent ,Organic Chemistry ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,Coupling reaction ,0104 chemical sciences ,3. Good health ,Catalysis ,Inorganic Chemistry ,chemistry.chemical_compound ,chemistry ,Organic chemistry ,Amine gas treating ,Reactivity (chemistry) ,Physical and Theoretical Chemistry ,Phosphine - Abstract
The use of the dialkene divinyltetramethyldisiloxane (dvtms) allows easy access to the reactive 16-valence-electron complexes [Fe0(L-L)(dvtms)] (L-L = dppe (1,2-bis(diphenylphosphino)ethane; 1), dppp (1,2-bis(diphenylphosphino)propane; 2), pyNMeP(iPr)2 (N-(diisopropylphosphino)-N-methylpyridin-2-amine; 4), dipe (1,2-bis(diisopropylphosphino)ethane; 5)) and [Fe0(L)2(dvtms)] (L = PMe3; 3) by a mild reductive route using AlEt2(OEt) as reducing agent. In contrast, by the same methodology, the 18-valence-electron complexes [Fe0(L-L)2(ethylene)] (L-L = dppm (1,2-bis(diphenylphosphino)methane; 6), dppa (1,2-bis(diphenylphosphino)amine; 7), dppe (8)) were obtained, which do not contain dvtms. In addition, a combined DFT and solid-state paramagnetic NMR methodology is introduced for the structure determination of 5. A comparative study of the reactivity of 1, 2, 4–6, and 8 with 3-hexyne highlights emerging mechanistic implications for C–C coupling reactions using these complexes as catalysts.
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- 2017
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24. Zuordnung der Rückgrat- und Seitenketten-Protonen in vollständig protonierten Proteinen durch Festkörper-NMR-Spektroskopie: Mikrokristalle, Sedimente und Amyloidfibrillen
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Kaspars Tars, Serena Leone, Nicholas E. Dixon, Delia Picone, Svetlana Kotelovica, Mélanie Berbon, Birgit Habenstein, Sven J. Saupe, Zhi-Qiang Xu, Andrea Bertarello, Antoine Loquet, Denis Martinez, Jan Stanek, Abdelmajid Noubhani, Diane Cala, Andrea Pica, Inara Akopjana, Kristaps Jaudzems, Loren B. Andreas, Daniela Lalli, Guido Pintacuda, Tobias Schubeis, and Nadia El Mammeri
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010405 organic chemistry ,Chemistry ,General Medicine ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences - Published
- 2016
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25. Weak and Transient Protein Interactions Determined by Solid‐State NMR
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Hugh R. W. Dannatt, Michele Felletti, Stefan Jehle, Yao Wang, Lyndon Emsley, Nicholas E. Dixon, Anne Lesage, and Guido Pintacuda
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010405 organic chemistry ,General Medicine ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences - Published
- 2016
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26. Chapter 6:Solid-state NMR of Paramagnetic Proteins
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Andrea Bertarello and Guido Pintacuda
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Physical chemistry ,Solid-state ,Solid-state nuclear magnetic resonance ,Condensed Matter::Strongly Correlated Electrons ,Paramagnetism ,Materials science - Abstract
In this chapter we will briefly summarize how the presence of paramagnetic centers affects the NMR properties of paramagnetic proteins in the solid state and describe how the experimental strategies used in solution should be modified to characterize these systems. In parallel, we will provide some case studies from the recent literature that highlight the tremendous potential of solid-state NMR for the characterization of paramagnetic proteins.
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- 2018
27. Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016)
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Shabir Najmudin, Johan C. Hill, Guido Pintacuda, Kinlin L. Chao, John Moult, Arnaud Baslé, T.H. Nguyen, Kaspars Tars, Harry J. Gilbert, Krzysztof Fidelis, Christopher S. Hayes, Marco Nardini, Reinhard Albrecht, Mark J. van Raaij, Valentina Nardone, Roman I. Koning, Celia W. Goulding, Pedro Bule, A.K. Singh, Nicole Zitzmann, Andrzej Joachimiak, Osnat Herzberg, Leila Lo Leggio, Carlos M. G. A. Fontes, Eric J. Sundberg, Pietro Roversi, Didier Ndeh, Andriy Kryshtafovych, Amir Shimon, Gert Wieland Kohring, Folmer Fredslund, Alessandro T. Caputo, Ana Luísa Carvalho, Marco Mangiagalli, Karolina Michalska, Sandra Postel, Marcus D. Hartmann, Torsten Schwede, Ron Diskin, Genome Center [UC Davis], University of California [Davis] (UC Davis), University of California-University of California, Abteilung Membranbiochemie [Martinsried], Max-Planck-Institut für Biochemie (MPIB), Max-Planck-Gesellschaft-Max-Planck-Gesellschaft, Institute for Cell and Molecular Biosciences, Newcastle University [Newcastle], Interdisciplinary Centre of Research in Animal Health, Faculdade de Medicina Veterinária, Pólo Universitário do Alto da Ajuda, Universidade de Lisboa, Oxford Glycobiol Inst, Dept Biochem, University of Oxford [Oxford], Unidade de Ciencias Biomoleculares Aplicadas (UCIBIO), Requimte, Departamento de Química (DQ), Faculdade de Ciências e Tecnologia = School of Science & Technology (FCT NOVA), Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)-Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)-Faculdade de Ciências e Tecnologia = School of Science & Technology (FCT NOVA), Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)-Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)-Universidade do Porto-Departamento de Química (DQ), Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)-Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)-Universidade do Porto, Dept Mol Cellular & Dev Biol, University of California [Santa Barbara] (UCSB), Structural Biology Center, Biosciences Division, Universität des Saarlandes [Saarbrücken], Department of Chemistry, University of Copenhagenn, Department of Cell Biology and Molecular Genetics, University of Maryland [College Park], University of Maryland System-University of Maryland System, Department of Biomolecular Sciences and Biotechnology, University of Milano, Biological Solid-State NMR Methods - Méthodes de RMN à l'état solide en biologie, Institut des Sciences Analytiques (ISA), Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Biomedical Research & Study Centre, Department of Biochemistry [Oxford], Biozentrum [Basel, Suisse], University of Basel (Unibas), Kryshtafovych, A, Albrecht, R, Baslé, A, Bule, P, Caputo, A, Carvalho, A, Chao, K, Diskin, R, Fidelis, K, Fontes, C, Fredslund, F, Gilbert, H, Goulding, C, Hartmann, M, Hayes, C, Herzberg, O, Hill, J, Joachimiak, A, Kohring, G, Koning, R, Lo Leggio, L, Mangiagalli, M, Michalska, K, Moult, J, Najmudin, S, Nardini, M, Nardone, V, Ndeh, D, Nguyen, T, Pintacuda, G, Postel, S, Van Raaij, M, Roversi, P, Shimon, A, Singh, A, Sundberg, E, Tars, K, Zitzmann, N, and Schwede, T
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0301 basic medicine ,Models, Molecular ,Protein Folding ,Protein Conformation ,Bioinformatics ,FIS/07 - FISICA APPLICATA (A BENI CULTURALI, AMBIENTALI, BIOLOGIA E MEDICINA) ,Computational biology ,computer.software_genre ,Crystallography, X-Ray ,Biochemistry ,Article ,Mathematical Sciences ,03 medical and health sciences ,Structural Biology ,Models ,Information and Computing Sciences ,[CHIM]Chemical Sciences ,Animals ,Humans ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,CASP ,Molecular Biology ,X-ray crystallography ,Physics ,Crystallography ,Bacteria ,Proteins ,Computational Biology ,Molecular ,Protein structure prediction ,Biological Sciences ,BIO/10 - BIOCHIMICA ,NMR ,protein structure prediction ,030104 developmental biology ,Biological significance ,X-Ray ,Data mining ,computer ,Software - Abstract
International audience; The functional and biological significance of the selected CASP12 targets are described by the authors of the structures. The crystallographers discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP12 experiment.
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- 2018
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28. Rapid access to RNA resonances by proton-detected solid-state NMR at >100 kHz MAS
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Alexander Marchanka, Teresa Carlomagno, Guido Pintacuda, Jan Stanek, Helmholtz-Zentrum für Infektionsforschung GmbH, Inhoffenstr. 7, 38124 Braunschweig, Germany., Centre for Biomolecular Drug Research (BMWZ) and Institute of Organic Chemistry, Leibniz Universität Hannover [Hannover] (LUH), Biological Solid-State NMR Methods - Méthodes de RMN à l'état solide en biologie, Institut des Sciences Analytiques (ISA), Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), and Helmholtz Centre for Infection Research
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RNA Resonance ,Dewey Decimal Classification::500 | Naturwissenschaften::540 | Chemie ,Materials science ,Proton ,Nuclear Magnetic Resonance ,010402 general chemistry ,01 natural sciences ,Catalysis ,Nuclear magnetic resonance ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,Materials Chemistry ,Magic angle spinning ,Rapid access ,Spectroscopy ,ComputingMilieux_MISCELLANEOUS ,Spin-½ ,010405 organic chemistry ,Metals and Alloys ,RNA ,General Chemistry ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Solid-state nuclear magnetic resonance ,ddc:540 ,Ceramics and Composites - Abstract
Fast (>100 kHz) magic angle spinning solid-state NMR allows combining high-sensitive proton detection with the absence of an intrinsic molecular weight limit. Using this technique we observe for the first time narrow 1H RNA resonances and assign nucleotide spin systems with only 200 μg of uniformly 13C,15N-labelled RNA.
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- 2018
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29. Lipid bilayer-bound conformation of an integral membrane beta barrel protein by multidimensional MAS NMR
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Yongchao Su, Robert Silvers, Guido Pintacuda, Robert G. Griffin, Lyndon Emsley, Lindsay Clark, Loren B. Andreas, Matthew T. Eddy, Gerhard Wagner, Massachusetts Institute of Technology. Department of Chemistry, Francis Bitter Magnet Laboratory (Massachusetts Institute of Technology), Griffin, Robert Guy, Eddy, Matthew Thomas, Su, Yongchao, Silvers, Robert, Andreas, Loren, Clark, Lindsay, Department of Chemistry [MIT Cambridge], Massachusetts Institute of Technology (MIT), Francis Bitter Magnet Lab, Biological Solid-State NMR Methods - Méthodes de RMN à l'état solide en biologie, Institut des Sciences Analytiques (ISA), Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Dept Biol Chem & Mol Pharmacol, Harvard University [Cambridge], Solid-State NMR Methods for Materials - Méthodes de RMN à l'état solide pour les matériaux, and NIH Grants EB001960 and EB002026.
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Models, Molecular ,Protein Folding ,Lipid Bilayers ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Protein Structure, Secondary ,Article ,CHIMERIC POTASSIUM CHANNEL ,03 medical and health sciences ,Protein structure ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,Magic angle spinning ,Membrane fluidity ,Humans ,NICOTINIC ACETYLCHOLINE-RECEPTOR ,Lipid bilayer ,Nuclear Magnetic Resonance, Biomolecular ,Integral membrane protein ,Micelles ,Spectroscopy ,030304 developmental biology ,0303 health sciences ,VDAC ,Chemistry ,Voltage-Dependent Anion Channel 1 ,PHOSPHOLAMBAN PENTAMER ,ANION-SELECTIVE CHANNEL ,MITOCHONDRIAL OUTER-MEMBRANE ,Magnetic Resonance Imaging ,TRANSMEMBRANE DOMAIN ,Protein Structure, Tertiary ,SOLID-STATE NMR ,2D lipid crystals ,3. Good health ,0104 chemical sciences ,Crystallography ,ANGLE-SPINNING NMR ,MAS ,Beta barrel ,Solid-state nuclear magnetic resonance ,Membrane protein ,BACTERIORHODOPSIN PHOTOCYCLE ,Recoupling ,lipids (amino acids, peptides, and proteins) ,ROTATIONAL RESONANCE - Abstract
The human voltage dependent anion channel 1 (VDAC) is a 32 kDa β-barrel integral membrane protein that controls the transport of ions across the outer mitochondrial membrane. Despite the determination of VDAC solution and diffraction structures, a structural basis for the mechanism of its function is not yet fully understood. Biophysical studies suggest VDAC requires a lipid bilayer to achieve full function, motivating the need for atomic resolution structural information of VDAC in a membrane environment. Here we report an essential step toward that goal: extensive assignments of backbone and side chain resonances for VDAC in DMPC lipid bilayers via magic angle spinning nuclear magnetic resonance (MAS NMR). VDAC reconstituted into DMPC lipid bilayers spontaneously forms two-dimensional lipid crystals, showing remarkable spectral resolution (0.5–0.3 ppm for [superscript 13]C line widths and, National Institutes of Health (U.S.) (Grant EB001960), National Institutes of Health (U.S.) (Grant EB002026)
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- 2015
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30. Low-power broadband solid-state MAS NMR of
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Andrew J, Pell, Kevin J, Sanders, Sebastian, Wegner, Guido, Pintacuda, and Clare P, Grey
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ARTICLES - Abstract
We propose two broadband pulse schemes for 14N solid-state magic-angle-spinning (MAS) nuclear magnetic resonance (NMR) that achieves (i) complete population inversion and (ii) efficient excitation of the double-quantum spectrum using low-power single-sideband-selective pulses. We give a comprehensive theoretical description of both schemes using a common framework that is based on the jolting-frame formalism of Caravatti et al. [J. Magn. Reson. 55, 88 (1983)]. This formalism is used to determine for the first time that we can obtain complete population inversion of 14N under low-power conditions, which we do here using single-sideband-selective adiabatic pulses. It is then used to predict that double-quantum coherences can be excited using low-power single-sideband-selective pulses. We then proceed to design a new experimental scheme for double-quantum excitation. The final double-quantum excitation pulse scheme is easily incorporated into other NMR experiments, as demonstrated here for double quantum–single quantum 14N correlation spectroscopy, and 1H–14N dipolar heteronuclear multiple-quantum correlation experiments. These pulses and irradiation schemes are evaluated numerically using simulations on single crystals and full powders, as well as experimentally on ammonium oxalate ((NH4)2C2O4) at moderate MAS and glycine at ultra-fast MAS. The performance of these new NMR methods is found to be very high, with population inversion efficiencies of 100% and double-quantum excitation efficiencies of 30%–50%, which are hitherto unprecedented for the low radiofrequency field amplitudes, up to the spinning frequency, that are used here.
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- 2017
31. Selective
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Mukul G, Jain, Daniela, Lalli, Jan, Stanek, Chandrakala, Gowda, Satya, Prakash, Tom S, Schwarzer, Tobias, Schubeis, Kathrin, Castiglione, Loren B, Andreas, P K, Madhu, Guido, Pintacuda, and Vipin, Agarwal
- Abstract
Very fast magic-angle spinning (MAS80 kHz) NMR combined with high-field magnets has enabled the acquisition of proton-detected spectra in fully protonated solid samples with sufficient resolution and sensitivity. One of the primary challenges in structure determination of protein is observing long-range
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- 2017
32. Editorial for Special Issue 'Structure and dynamics of biomolecular assemblies by solid-state NMR'
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Guido Pintacuda, Amir Goldbourt, Tatyana Polenova, Department of Chemistry and Biochemistry, University of Delaware [Newark], Centre de RMN à très hauts champs de Lyon (CRMN), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), and École normale supérieure - Lyon (ENS Lyon)-Université Claude Bernard Lyon 1 (UCBL)
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0303 health sciences ,Magnetic Resonance Spectroscopy ,Materials science ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,Systems Biology ,030302 biochemistry & molecular biology ,Structure (category theory) ,[SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biophysics ,03 medical and health sciences ,Solid-state nuclear magnetic resonance ,Structural Biology ,Chemical physics ,[CHIM]Chemical Sciences ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Nuclear Magnetic Resonance, Biomolecular ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,Introductory Journal Article - Abstract
International audience
- Published
- 2019
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33. Characterising local environments in high energy density Li-ion battery cathodes: a combined NMR and first principles study of LiFexCo1−xPO4
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Raphaële J. Clément, Guido Pintacuda, Derek S. Middlemiss, Ago Samoson, Andrew J. Pell, Lyndon Emsley, Fiona C. Strobridge, Frédérique Pourpoint, Michal Leskes, John V. Hanna, Zhouguang Lu, Clare P. Grey, Department of Chemistry, University of Cambridge [UK] (CAM), Institut des Sciences Analytiques (ISA), Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Laboratory of Green and Renewable Energy Materials, Southern University of Science and Technology [Shenzhen] (SUSTech), Department of Physics, University of Warwick [Coventry], Biological Solid-State NMR Methods - Méthodes de RMN à l'état solide en biologie, Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Solid-State NMR Methods for Materials - Méthodes de RMN à l'état solide pour les matériaux, Tehnomeedikum, Tallinn University of Technology (TTÜ), Stony Brook University [SUNY] (SBU), State University of New York (SUNY)-State University of New York (SUNY), and We thank Ben Zhu for his help with the NMR and thoughtful discussions. We also thank the UK EPSRC for a DTA award (FCS) the US DOE for support via NECCES, an Energy Frontier Research Center (DE-SC0001294) (CPG) and the EU ERC for financial support and a Marie Curie intra-European fellowship (ML). AJP, GP and LE were supported by the LABEX iMUST (ANR-10-LABX-0064) of the Universite de Lyon, within the program 'Investissements d'Avenir' (ANR-11- IDEX-0007) operated by the Agence Nationale de la Recherche (ANR). JVH thanks the EPSRC and the University of Warwick for partial funding of the solid-state NMR infrastructure at Warwick, and acknowledges additional support for this infrastructure obtained through Birmingham Science City: Innovative Uses for Advanced Materials in the Modern World (West Midlands Centre for Advanced Materials Projects 1 and 2), with support from Advantage West Midlands (AWM) and partial funding by the European Regional Development Fund (ERDF).
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RECHARGEABLE LITHIUM BATTERIES ,Fermi contact interaction ,FUNCTIONAL THEORY ,Analytical chemistry ,7. Clean energy ,Molecular physics ,TRANSITION-METAL PHOSPHATES ,Ion ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,General Materials Science ,SIDE-BAND ,ADIABATIC PULSES ,Spin-½ ,Renewable Energy, Sustainability and the Environment ,Chemistry ,HYPERFINE SHIFTS ,Isotropy ,Resolution (electron density) ,General Chemistry ,DFT CALCULATIONS ,SOLID-STATE NMR ,NMR spectra database ,FERMI CONTACT SHIFTS ,Unpaired electron ,Solid-state nuclear magnetic resonance ,MAS NMR - Abstract
International audience; Olivine-type LiCoPO4 (LCP) is a high energy density lithium ion battery cathode material due to the high voltage of the Co2+/Co3+ redox reaction. However, it displays a significantly poorer electrochemical performance than its more widely investigated isostructural analogue LiFePO4 (LFP). The co-substituted LiFexCo1-xPO4 olivines combine many of the positive attributes of each end member compound and are promising next-generation cathode materials. Here, the fully lithiated x = 0, 0.25, 0.5, 0.75 and 1 samples are extensively studied using P-31 solid-state nuclear magnetic resonance (NMR). Practical approaches to broadband excitation and for the resolution of the isotropic resonances are described. First principles hybrid density functional calculations are performed on the Fermi contact shift (FCS) contributions of individual M-O-P pathways in the end members LFP and LCP and compared with the fitted values extracted from the LiFexCo1-xPO4 experimental data. Combining both data sets, the FCS for the range of local P environments expected in LiFexCo1-xPO4 have been calculated and used to assign the NMR spectra. Due to the additional unpaired electron in d(6) Fe2+ as compared with d(7) Co2+ (both high spin), LFP is expected to have larger Fermi contact shifts than LCP. However, two of the Co-O-P pathways in LCP give rise to noticeably larger shifts and the unexpected appearance of peaks outside the range delimited by the pure LFP and LCP P-31 shifts. This behaviour contrasts with that observed previously in LiFexMn1-xPO4, where all P-31 shifts lay within the LiMnPO4-LFP range. Although there are 24 distinct local P environments in LiFexCo1-xPO4, these group into seven resonances in the NMR spectra, due to significant overlap of the isotropic shifts. The local environments that give rise to the largest contributions to the spectral intensity are identified and used to simplify the assignment. This provides a tool for future studies of the electrochemically-cycled samples, which would otherwise be challenging to interpret.
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- 2014
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34. Magic Angle Spinning NMR of Paramagnetic Proteins
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Lyndon Emsley, Roberta Pierattelli, Michael J. Knight, Guido Pintacuda, Isabella C. Felli, ISA - Centre de RMN à très hauts champs, Institut des Sciences Analytiques (ISA), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Dept Chem Ugo Schiff, Università degli Studi di Firenze = University of Florence (UniFI), Magnet Resonance Ctr CERM, Agence Nationale de la Recherche (ANR 08-BLAN-0035-01 , 10-BLAN-713-01), Ente Cassa di Risparmio di Firenze, Egide (programmes Galiee 22397RJ , 26000XF), the Universita Italo-francese (programma Galileo 2011/2012, Progetto 26000XF), Joint Research Activity and Access to Research Infrastructures in the 7th Framework program of the EC (BioNMR no. 261863)., ANR-08-BLAN-0035,PARA-NMR,Structure and reactivity of paramagnetic molecules by solid-state NMR(2008), European Project, Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), and Università degli Studi di Firenze = University of Florence [Firenze] (UNIFI)
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Models, Molecular ,Magnetic Resonance Spectroscopy ,Carbon-13 NMR satellite ,010402 general chemistry ,01 natural sciences ,SENSITIVITY ENHANCEMENT ,Magnetics ,Paramagnetism ,LATTICE-RELAXATION ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,Metalloproteins ,Magic angle spinning ,SUPEROXIDE-DISMUTASE ,Molecule ,Spectroscopy ,SPECTROSCOPY ,010405 organic chemistry ,Chemistry ,Proteins ,CRYSTALLINE PROTEIN ,General Medicine ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,QUANTITATIVE-ANALYSIS ,SOLID-STATE NMR ,0104 chemical sciences ,RANGE STRUCTURAL RESTRAINTS ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,Crystallography ,RESOLUTION ,Unpaired electron ,Solid-state nuclear magnetic resonance ,BACKBONE DYNAMICS ,Condensed Matter::Strongly Correlated Electrons - Abstract
International audience; Metal ions are ubiquitous in biochemical and cellular processes. Since many metal ions are paramagnetic due to the presence of unpaired electrons, paramagnetic molecules are an important class of targets for research in structural biology and related fields. Today, NMR spectroscopy plays a central role in the investigation of the structure and chemical properties of paramagnetic metalloproteins, linking the observed paramagnetic phenomena directly to electronic and molecular structure. A major step forward in the study of proteins by solid-state NMR came with the advent of ultrafast magic angle spinning (MAS) and the ability to use (1)H detection. Combined, these techniques have allowed investigators to observe nuclei that previously were invisible in highly paramagnetic metalloproteins. In addition, these techniques have enabled quantitative site-specific measurement of a variety of long-range paramagnetic effects. Instead of limiting solid-state NMR studies of biological systems, paramagnetism provides an information-rich phenomenon that can be exploited in these studies. This Account emphasizes state-of-the-art methods and applications of solid-state NMR in paramagnetic systems in biological chemistry. In particular, we discuss the use of ultrafast MAS and (1)H-detection in perdeuterated paramagnetic metalloproteins. Current methodology allows us to determine the structure and dynamics of metalloenzymes, and, as an example, we describe solid-state NMR studies of microcrystalline superoxide dismutase, a 32 kDa dimer. Data were acquired with remarkably short times, and these experiments required only a few milligrams of sample.
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- 2013
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35. Frontispiz: Zuordnung der Rückgrat- und Seitenketten-Protonen in vollständig protonierten Proteinen durch Festkörper-NMR-Spektroskopie: Mikrokristalle, Sedimente und Amyloidfibrillen
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Jan Stanek, Loren B. Andreas, Kristaps Jaudzems, Diane Cala, Daniela Lalli, Andrea Bertarello, Tobias Schubeis, Inara Akopjana, Svetlana Kotelovica, Kaspars Tars, Andrea Pica, Serena Leone, Delia Picone, Zhi-Qiang Xu, Nicholas E. Dixon, Denis Martinez, Mélanie Berbon, Nadia El Mammeri, Abdelmajid Noubhani, Sven Saupe, Birgit Habenstein, Antoine Loquet, and Guido Pintacuda
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General Medicine - Published
- 2016
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36. Structure of AP205 Coat Protein Reveals Circular Permutation in ssRNA Bacteriophages
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Andris Kazaks, Loren B. Andreas, Christoph A. Diebolder, Inara Akopjana, Kristaps Jaudzems, Janis Rumnieks, Jan Stanek, Svetlana Kotelovica, Mihails Shishovs, Kaspars Tars, Guido Pintacuda, Roman I. Koning, Latvian Biomed Res & Study Ctr, Netherlands Ctr Electron Nanoscopy, Leiden University, Solid-State NMR Methods for Materials - Méthodes de RMN à l'état solide pour les matériaux, Institut des Sciences Analytiques (ISA), Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Biological Solid-State NMR Methods - Méthodes de RMN à l'état solide en biologie, Dept Cell Biol, Dept Mol Biol, University of Latvia (LU), and The study was supported by grant 12.094 from the Latvian Council of Sciences, grant 2010/0314/2DP/2.1.1.1.0/10/APIA/VIAA/052 from the European Regional Development Fund, grant 7869 from Biostruct-X, and the Latvian French cooperation program Osmosis. This research has been executed with the support of NeCEN, the Netherlands Centre for Electron Nanoscopy, Leiden, NL, and of NWO, the Netherlands Organisation for Scientific Research, and is partly financed by the European Regional Development Fund of the European Commission.
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0301 basic medicine ,Models, Molecular ,RNA bacteriophage ,Viral protein ,Cryo-electron microscopy ,Protein Conformation ,010402 general chemistry ,medicine.disease_cause ,Crystallography, X-Ray ,01 natural sciences ,virus-like particle ,Bacteriophage ,03 medical and health sciences ,Structural Biology ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,Leviviridae ,medicine ,RNA Viruses ,Bacteriophages ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Molecular Biology ,Protein secondary structure ,biology ,Cryoelectron Microscopy ,RNA ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,circular permutation ,RNA Phages ,Circular permutation in proteins ,biology.organism_classification ,3. Good health ,0104 chemical sciences ,Crystallography ,030104 developmental biology ,coat protein ,Biophysics ,Capsid Proteins - Abstract
We are thankful to the MAX-lab staff for their support during our visit at the synchrotron.; International audience; AP205 is a single-stranded RNA bacteriophage that has a coat protein sequence not similar to any other known single-stranded RNA phage. Here, we report an atomic-resolution model of the AP205 virus-like particle based on a crystal structure of an unassembled coat protein dimer and a cryo-electron microscopy reconstruction of the assembled particle, together with secondary structure information from site-specific solid-state NMR data. The AP205 coat protein dimer adopts the conserved Leviviridae coat protein fold except for the N-terminal region, which forms a beta-hairpin in the other known single-stranded RNA phages. AP205 has a similar structure at the same location formed by N- and C-terminal beta-strands, making it a circular permutant compared to the other coat proteins. The permutation moves the coat protein termini to the most surface-exposed part of the assembled particle, which explains its increased tolerance to long N- and C-terminal fusions.
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- 2016
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37. Backbone Assignment of Fully Protonated Solid Proteins by1H Detection and Ultrafast Magic-Angle-Spinning NMR Spectroscopy
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Alessandro Marchetti, Lyndon Emsley, Stefan Jehle, Michele Felletti, Gottfried Otting, Anne Lesage, Guido Pintacuda, Michael J. Knight, Ah Young Park, Zhi-Qiang Xu, Nicholas E. Dixon, Yao Wang, ISA - Centre de RMN à très hauts champs, Institut des Sciences Analytiques (ISA), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Scuola Normale Superiore di Pisa (SNS), School of Chemistry [Wollongong], University of Wollongong [Australia], Research School of Chemistry, Australian National University (ANU), Agence Nationale de la Recherche (ANR 08-BLAN-0035-01 and 10-BLAN-713-01), the Joint Research Activity within Research Infrastructures in the 7th Framework program of the EC (BioNMR, contract n. 261863), the Australian Research Council., and European Project
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STRUCTURAL BASIS ,magic-angle spinning ,TERMINAL DOMAIN ,Protonation ,DNA polymerase ,010402 general chemistry ,01 natural sciences ,Catalysis ,NMR spectroscopy ,Protein structure ,Magic angle spinning ,Transverse relaxation-optimized spectroscopy ,Spectroscopy ,Nuclear Magnetic Resonance, Biomolecular ,ComputingMilieux_MISCELLANEOUS ,DNA Polymerase III ,Carbon Isotopes ,Nitrogen Isotopes ,010405 organic chemistry ,Chemistry ,scalar transfers ,Proteins ,PEPTIDES ,General Medicine ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Deuterium ,0104 chemical sciences ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,Crystallography ,MAS ,RESOLUTION ,STATE NMR ,protein structures ,Proton NMR ,Protons ,Hydrogen - Abstract
Narrow 1H NMR linewidths can be obtained for fully protonated protein samples in the solid state by using ultrafast magic-angle spinning (60 kHz). Medium-size microcrystalline and noncrystalline proteins can be analyzed without any need for deuteration of the protein sample. This approach provides assignments of the backbone 1H, 15N, 13C α, and 13CO resonances and yields information about 1H-1H proximities. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
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- 2012
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38. Rapid Measurement of Pseudocontact Shifts in Metalloproteins by Proton-Detected Solid-State NMR Spectroscopy
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Isabella C. Felli, Lyndon Emsley, Roberta Pierattelli, Guido Pintacuda, Michael J. Knight, Ivano Bertini, Torsten Herrmann, ISA - Centre de RMN à très hauts champs, Institut des Sciences Analytiques (ISA), Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Dept Chem Ugo Schiff, Università degli Studi di Firenze = University of Florence [Firenze] (UNIFI), Magnet Resonance Ctr CERM, Agence Nationale de la Recherche (ANR08-BLAN-0035-01) (ANR10-BLAN-713-01), Ente Cassa di Risparmio di Firenze, Egide (Galiee 22397RJ) (26000XF), Universita Italo Francese (26000XF), Joint Research Activity, EC (EAST-NMR 228461) (BioNMR 261863), European Project, Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), and Università degli Studi di Firenze = University of Florence (UniFI)
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DYNAMICS ,IONS ,Models, Molecular ,Magnetic Resonance Spectroscopy ,Proton ,ASSIGNMENT ,Analytical chemistry ,PROTEIN ,RELAXATION ,Dihedral angle ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,Ion ,03 medical and health sciences ,Paramagnetism ,ENHANCEMENT ,Colloid and Surface Chemistry ,Nuclear magnetic resonance ,DOMAIN ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,Metalloproteins ,SUPEROXIDE-DISMUTASE ,Spectroscopy ,030304 developmental biology ,0303 health sciences ,PARAMAGNETIC METALLOPROTEINS ,Superoxide Dismutase ,Chemistry ,Relaxation (NMR) ,Cobalt ,General Chemistry ,Reference Standards ,0104 chemical sciences ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,Solid-state nuclear magnetic resonance ,Diamagnetism ,COMPLEXES ,Protons - Abstract
International audience; Pseudocontact shifts (PCSs) arise in para-magnetic systems in which the susceptibility tensor is anisotropic. PCSs depend upon the distance from the paramagnetic center and the position relative to the susceptibility tensor, and they can be used as structural restraints in protein structure determination. We show that the use of H-1-detected solid-state correlations provides facile and rapid detection and assignment of site-specific PCSs, including resolved H-1 PCSs, in a large metalloprotein, Co2+-substituted superoxide dismutase (Co2+-SOD). With only 3 mg of sample and a small set of experiments, several hundred PCSs were measured and assigned, and these PCSs were subsequently used in combination with H-1-H-1 distance and dihedral angle restraints to determine the protein backbone geometry with a precision paralleling those of state-of-the-art liquid-state determinations of diamagnetic proteins, including a well-defined active site.
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- 2012
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39. DOTA-Amide Lanthanide Tag for Reliable Generation of Pseudocontact Shifts in Protein NMR Spectra
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Choy Theng Loh, Sandeep Chhabra, Phuc Ung, Guido Pintacuda, Nicholas Barlow, James D. Swarbrick, James Shin, Bim Graham, Gottfried Otting, Xinying Jia, Thomas Huber, Hiromasa Yagi, Medicinal Chemistry and Drug Action, Monash Institute of Pharmaceutical Sciences [Parkville] (MIPS), Faculty of Pharmacy and Pharmaceutical Sciences - Monash University [Parkville], Monash university-Monash university-Faculty of Pharmacy and Pharmaceutical Sciences - Monash University [Parkville], Monash university-Monash university, Research School of Chemistry, Australian National University (ANU), ISA - Centre de RMN à très hauts champs, Institut des Sciences Analytiques (ISA), Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), and Australian Research Council
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Models, Molecular ,Lanthanide ,Protein Conformation ,Pharmaceutical Science ,MESH: Escherichia coli Proteins ,Lanthanoid Series Elements ,WATER EXCHANGE ,MAGNETIC-SUSCEPTIBILITY ,01 natural sciences ,chemistry.chemical_compound ,MESH: Protein Conformation ,Protein structure ,DESIGN ,MESH: Lanthanoid Series Elements ,Amide ,BINDING TAG ,MESH: Nuclear Magnetic Resonance, Biomolecular ,MESH: Proteins ,SPECTROSCOPY ,MESH: Escherichia coli ,Chemistry ,Escherichia coli Proteins ,Nuclear magnetic resonance spectroscopy ,SERIES ,NMR spectra database ,MESH: Repressor Proteins ,MESH: Heterocyclic Compounds, 1-Ring ,ACID ,LIGAND COMPLEXES ,PARAMAGNETIC NMR ,Target protein ,MESH: Models, Molecular ,Biotechnology ,MESH: Ubiquitin ,MESH: Mutation ,Stereochemistry ,Biomedical Engineering ,Bioengineering ,010402 general chemistry ,Heterocyclic Compounds, 1-Ring ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,Escherichia coli ,Humans ,DOTA ,Cysteine ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Nuclear Magnetic Resonance, Biomolecular ,Pharmacology ,MESH: Humans ,Ubiquitin ,010405 organic chemistry ,Organic Chemistry ,Proteins ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,MESH: Cysteine ,0104 chemical sciences ,Repressor Proteins ,Mutation ,DISTANCE - Abstract
International audience; Structural studies of proteins and protein-ligand complexes by nuclear magnetic resonance (NMR) spectroscopy can be greatly enhanced by site-specific attachment of lanthanide ions to create paramagnetic centers. In particular, pseudocontact shifts (PCS) generated by paramagnetic lanthanides contain important and unique long-range structure information. Here, we present a high-affinity lanthanide binding tag that can be attached to single cysteine residues of proteins. The new tag has many advantageous features that are not available in this combination from previously published tags: (i) it binds lanthanide ions very tightly, minimizing the generation of nonspecific effects, (ii) it produces PCSs with high reliability as its bulkiness prevents complete motional averaging of PCSs, (iii) it can be attached to single cysteine residues, alleviating the need of detailed prior knowledge of the 3D structure of the target protein, and (iv) it does not display conformational exchange phenomena that would increase the number of signals in the NMR spectrum. The performance of the tag is demonstrated with the N-terminal domain of the E. coli arginine repressor and the A28C mutant of human ubiquitin.
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- 2011
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40. ChemInform Abstract: Broadband Solid-State MAS NMR of Paramagnetic Systems
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Guido Pintacuda and Andrew J. Pell
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Paramagnetism ,Chemistry ,Modulation ,Magnet ,Excited state ,Relaxation (NMR) ,Complex system ,Condensed Matter::Strongly Correlated Electrons ,General Medicine ,Spectroscopy ,Excitation ,Computational physics - Abstract
The combination of new magnet and probe technology with increasingly sophisticated pulse sequences has resulted in an increase in the number of applications of solid-state nuclear magnetic resonance (NMR) spectroscopy to paramagnetic materials and biomolecules. The interaction between the paramagnetic metal ions and the NMR-active nuclei often yields crucial structural or electronic information about the system. In particular the application of magic-angle spinning (MAS) has been shown to be crucial to obtaining resolution that is sufficiently high for studying complex systems. However such systems are generally extremely difficult to study as the shifts and shift anisotropies resulting from the same paramagnetic interaction broaden the spectrum beyond excitation and detection, and the paramagnetic relaxation enhancement (PRE) shortens the lifetimes of the excited signals considerably. One specific area that has therefore been receiving significant attention in recent years, and for which great improvements have been seen, is the development of broadband NMR sequences. The development of new excitation and inversion sequences for paramagnetic systems under MAS has often made the difference between the spectrum being unobtainable, and a complete NMR study being possible. However the development of the new sequences must explicitly take account of the modulation of the anisotropic shift interactions due to the sample rotation, with the resulting spin dynamics often being complicated considerably. The NMR sequences can either be helped or hindered by MAS, with the efficiency of some pulse schemes being destroyed, and others being greatly enhanced. This review describes the pulse sequences that have recently been proposed for broadband excitation, inversion, and refocussing of the signal components of paramagnetic systems. In doing so we define exactly what is meant by “broadband” under spinning conditions, and what the perfect pulse scheme should deliver. We also give a unified description of the spin dynamics under MAS which highlights the strengths and weaknesses of the various schemes, and which can be used as guidance for future research in this area. All the reviewed pulse schemes are evaluated both with simulations and experimental data obtained on the battery material LiFe0.5Mn0.5PO4 which is typical of the complexity of the paramagnetic systems that are currently under study.
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- 2015
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41. Solid-State NMR of a Paramagnetic DIAD-FeII Catalyst: Sensitivity, Resolution Enhancement, and Structure-Based Assignments
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Charbel Roukoss, Christophe Copéret, Lyndon Emsley, Eberhardt Herdtweck, Eric Oldfield, Emile Kuntz, Gwendal Kervern, Jean Marie Basset, Yong Zhang, Guido Pintacuda, Anne Lesage, Sylvian Cadars, Laboratoire de Chimie - UMR5182 (LC), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Anorganisch-chemisches Institut, Technische Universität Munchen - Université Technique de Munich [Munich, Allemagne] (TUM), Laboratoire de Chimie, Catalyse, Polymères et Procédés, R 5265 (C2P2), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-École Supérieure de Chimie Physique Électronique de Lyon (CPE)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Conditions Extrêmes et Matériaux : Haute Température et Irradiation (CEMHTI), Université d'Orléans (UO)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Laboratory for Inorganic, Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-École normale supérieure - Lyon (ENS Lyon)-Institut de Chimie du CNRS (INC), Centre National de la Recherche Scientifique (CNRS)-École supérieure de Chimie Physique Electronique de Lyon (CPE)-Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)
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Magnetic Resonance Spectroscopy ,Magic angle ,Cations, Divalent ,Carbon-13 NMR satellite ,Iron ,Analytical chemistry ,Fluorine-19 NMR ,Crystallography, X-Ray ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,Magnetics ,Colloid and Surface Chemistry ,Organometallic Compounds ,Magic angle spinning ,[CHIM]Chemical Sciences ,ComputingMilieux_MISCELLANEOUS ,Earth's field NMR ,Carbon Isotopes ,010405 organic chemistry ,Chemistry ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Carbon-13 NMR ,Deuterium ,Carbon ,0104 chemical sciences ,Solid-state nuclear magnetic resonance ,Anisotropy ,Quantum Theory ,Spin Labels ,Condensed Matter::Strongly Correlated Electrons ,Protons ,Algorithms - Abstract
A general protocol for the structural characterization of paramagnetic molecular solids using solid-state NMR is provided and illustrated by the characterization of a high-spin Fe(II) catalyst precursor. We show how good NMR performance can be obtained on a molecular powder sample at natural abundance by using very fast (30 kHz) magic angle spinning (MAS), even though the individual NMR resonances have highly anisotropic shifts and very short relaxation times. The results include the optimization of broadband heteronuclear (proton-carbon) recoupling sequences for polarization transfer; the observation of single or multiple quantum correlation spectra between coupled spins as a tool for removing the inhomogeneous bulk magnetic susceptibility (BMS) broadening; and the combination of NMR experiments and density functional theory calculations, to yield assignments.
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- 2006
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42. Site-specific Labelling with a Metal Chelator for Protein-structure Refinement
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Gottfried Otting, Anatoly Sharipo, Ahmad Moshref, Ainars Leonchiks, and Guido Pintacuda
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Models, Molecular ,Magnetic Resonance Spectroscopy ,Time Factors ,Metal ions in aqueous solution ,Electrons ,Gadolinium ,Biochemistry ,Ion ,Paramagnetism ,chemistry.chemical_compound ,Nuclear magnetic resonance ,Bacterial Proteins ,Amide ,Escherichia coli ,Chelation ,Cysteine ,Edetic Acid ,Spectroscopy ,Chelating Agents ,Ions ,Manganese ,Electronic correlation ,Chemistry ,Relaxation (NMR) ,Electron Spin Resonance Spectroscopy ,Proteins ,Cobalt ,DNA ,Protein Structure, Tertiary ,Repressor Proteins ,Crystallography ,Models, Chemical ,Covalent bond ,Protons ,Copper - Abstract
A single free Cys sidechain in the N-terminal domain of the E. coli arginine repressor was covalently derivatized with S-cysteaminyl-EDTA for site-specific attachment of paramagnetic metal ions. The effects of chelated metal ions were monitored with (15)N-HSQC spectra. Complexation of Co(2+), which has a fast relaxing electron spin, resulted in significant pseudocontact shifts, but also in peak doubling which was attributed to the possibility of forming two different stereoisomers of the EDTA-Co(2+) complex. In contrast, complexation of Cu(2+) or Mn(2+), which have slowly relaxing electron spins, did not produce chemical shift changes and yielded self-consistent sets of paramagnetic relaxation enhancements of the amide protons. T (1) relaxation enhancements with Cu(2+) combined with T (2) relaxation enhancements with Mn(2+) are shown to provide accurate distance restraints ranging from 9 to 25 A. These long-range distance restraints can be used for structural studies inaccessible to NOEs. As an example, the structure of a solvent-exposed loop in the N-terminal domain of the E. coli arginine repressor was refined by paramagnetic restraints. Electronic correlation times of Cu(2+) and Mn(2+) were determined from a comparison of T (1) and T (2) relaxation enhancements.
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- 2004
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43. Fast Structure-Based Assignment of 15N HSQC Spectra of Selectively 15N-Labeled Paramagnetic Proteins
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Max A. Keniry, Gottfried Otting, Ah Young Park, Guido Pintacuda, Thomas Huber, and Nicholas E. Dixon
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Models, Molecular ,Nitrogen Isotopes ,Chemistry ,Relaxation (NMR) ,Resonance ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Biochemistry ,Magnetic susceptibility ,Catalysis ,Protein Subunits ,Paramagnetism ,Colloid and Surface Chemistry ,Nuclear magnetic resonance ,Residual dipolar coupling ,Isotope Labeling ,Escherichia coli ,Anisotropy ,Diamagnetism ,Condensed Matter::Strongly Correlated Electrons ,Nuclear Magnetic Resonance, Biomolecular ,Algorithms ,Software ,Heteronuclear single quantum coherence spectroscopy ,DNA Polymerase III - Abstract
A novel strategy for fast NMR resonance assignment of (15)N HSQC spectra of proteins is presented. It requires the structure coordinates of the protein, a paramagnetic center, and one or more residue-selectively (15)N-labeled samples. Comparison of sensitive undecoupled (15)N HSQC spectra recorded of paramagnetic and diamagnetic samples yields data for every cross-peak on pseudocontact shift, paramagnetic relaxation enhancement, cross-correlation between Curie-spin and dipole-dipole relaxation, and residual dipolar coupling. Comparison of these four different paramagnetic quantities with predictions from the three-dimensional structure simultaneously yields the resonance assignment and the anisotropy of the susceptibility tensor of the paramagnetic center. The method is demonstrated with the 30 kDa complex between the N-terminal domain of the epsilon subunit and the theta subunit of Escherichia coli DNA polymerase III. The program PLATYPUS was developed to perform the assignment, provide a measure of reliability of the assignment, and determine the susceptibility tensor anisotropy.
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- 2004
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44. Solution versus Solid-State Structure of Ytterbium Heterobimetallic Catalysts
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Piero Salvadori, Guido Pintacuda, Lorenzo Di Bari, Moreno Lelli, Fabio Marchetti, and Gennaro Pescitelli
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Ytterbium ,Circular dichroism ,Stereochemistry ,chemistry.chemical_element ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Crystal structure ,Biochemistry ,Solid state structure ,Solution structure ,Catalysis ,Crystallography ,Colloid and Surface Chemistry ,chemistry ,Molecule - Abstract
The solution structures of the ytterbium heterobimetallic complexes Na(3)[Yb((S)-BINOL)(3)] (1), K(3)[Yb((S)-BINOL)(3)] (2), and Li(3)[Yb((S)-BINOL)(3)] (3), belonging to a family of well-known enantioselective catalysts, are studied by means of NMR and circular dichroism (CD) in the UV and near-IR regions. The experimental NMR paramagnetic shifts were employed to obtain a refined solution structure of 1. NMR analysis demonstrated that 1, 2, and 3 have the same solution geometry but different magnetic susceptibility anisotropy D factors. By comparing XRD and NMR structures of 1, we demonstrate that, upon dissolution, this complex experiences a rearrangement from the crystalline C(3) symmetry into the solution D(3) symmetry. Remarkably, Yb is not bound to water in solution, and Ln-BINOL bonds are labile as demonstrated through EXSY. NIR-CD is confirmed especially sensitive to changes in the ytterbium coordination sphere.
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- 2003
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45. [Untitled]
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Guido Pintacuda, Karin Hohenthanner, Gottfried Otting, and Norbert Müller
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Dipole ,Paramagnetism ,Condensed matter physics ,Chemical bond ,Magnetism ,Chemistry ,Relaxation (NMR) ,Condensed Matter::Strongly Correlated Electrons ,Anisotropy ,Spin (physics) ,Biochemistry ,Magnetic susceptibility ,Spectroscopy - Abstract
The 15N-HSQC spectra of low-spin cyano-met-myoglobin and high-spin fluoro-met-myoglobin were assigned and dipole-dipole-Curie-spin cross-correlated relaxation rates measured. These cross-correlation rates originating from the dipolar 1H-15N interaction and the dipolar interaction between the 1H and the Curie spin of the paramagnetic center contain long-range angular information about the orientation of the 1H-15N bond with respect to the iron-1H vector, with information measurable up to 11 A from the metal for the low-spin complex, and between 10 to 25 A for the high-spin complex. Comparison of the experimental data with predictions from crystal structure data showed that the anisotropy of the magnetic susceptibility tensor in low spin cyano-met-myoglobin significantly influences the cross-correlated dipole-dipole-Curie-spin relaxation rates.
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- 2003
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46. Sensitivity and resolution of proton detected spectra of a deuterated protein at 40 and 60 kHz magic-angle-spinning
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W. Trent Franks, Kristina Rehbein, Andrew J. Nieuwkoop, Uemit Akbey, Hartmut Oschkinat, Lyndon Emsley, Anne Diehl, Frank Engelke, Guido Pintacuda, Leibniz Forschungsinstitut für Molekulare Pharmakolgie = Leibniz Institute for Molecular Pharmacology [Berlin, Allemagne] (FMP), Leibniz Association, Bruker BioSpin GmbH, D-76287 Rheinstetten, Germany, affiliation inconnue, Ecole Polytechnique Fédérale de Lausanne (EPFL), Solid-State NMR Methods for Materials - Méthodes de RMN à l'état solide pour les matériaux, Institut des Sciences Analytiques (ISA), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Biological Solid-State NMR Methods - Méthodes de RMN à l'état solide en biologie, A.J.N. was supported by fellowships from the Fulbright Program and the Alexander von Humboldt Foundation. This work was also supported by the CNRS (TGIR-RMN-THC FR3050) and from a Joint Research Activity in the 7th Framework program of the EC (BioNMR No. 261863)., and European Project
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Proton ,Proton Magnetic Resonance Spectroscopy ,Analytical chemistry ,H-1 back exchange ,Biochemistry ,Solid-state NMR ,Sensitivity and Specificity ,H-1 DETECTION ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,SOLVENT SUPPRESSION ,Deuteration ,Magic angle spinning ,SH3 DOMAIN ,Nuclear Magnetic Resonance, Biomolecular ,Spectroscopy ,Proton detection ,RESONANCE ASSIGNMENT ,Carbon Isotopes ,Nitrogen Isotopes ,Chemistry ,MEMBRANE-PROTEINS ,Relaxation (NMR) ,Resolution (electron density) ,Proteins ,CORRELATION SPECTROSCOPY ,Deuterium ,NMR spectra database ,MAS ,Fast spinning ,Solid-state nuclear magnetic resonance ,Multiprotein Complexes ,CROSS-POLARIZATION ,Two-dimensional nuclear magnetic resonance spectroscopy ,BACKBONE ASSIGNMENT - Abstract
We would like to thank Matthias Hiller and Sebastian Wegner for assistance installing and calibrating the probes in Berlin. A.J.N. was supported by fellowships from the Fulbright Program and the Alexander von Humboldt Foundation. This work was also supported by the CNRS (TGIR-RMN-THC FR3050) and from a Joint Research Activity in the 7th Framework program of the EC (BioNMR No. 261863).; International audience; The use of small rotors capable of very fast magic-angle spinning (MAS) in conjunction with proton dilution by perdeuteration and partial reprotonation at exchangeable sites has enabled the acquisition of resolved, proton detected, solid-state NMR spectra on samples of biological macromolecules. The ability to detect the high-gamma protons, instead of carbons or nitrogens, increases sensitivity. In order to achieve sufficient resolution of the amide proton signals, rotors must be spun at the maximum rate possible given their size and the proton back-exchange percentage tuned. Here we investigate the optimal proton back-exchange ratio for triply labeled SH3 at 40 kHz MAS. We find that spectra acquired on 60 % back-exchanged samples in 1.9 mm rotors have similar resolution at 40 kHz MAS as spectra of 100 % back-exchanged samples in 1.3 mm rotors spinning at 60 kHz MAS, and for (H)NH 2D and (H)CNH 3D spectra, show 10-20 % higher sensitivity. For 100 % back-exchanged samples, the sensitivity in 1.9 mm rotors is superior by a factor of 1.9 in (H)NH and 1.8 in (H)CNH spectra but at lower resolution. For (H)C(C)NH experiments with a carbon-carbon mixing period, this sensitivity gain is lost due to shorter relaxation times and less efficient transfer steps. We present a detailed study on the sensitivity of these types of experiments for both types of rotors, which should enable experimentalists to make an informed decision about which type of rotor is best for specific applications.
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- 2014
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47. ChemInform Abstract: Local Environments of Dilute Activator Ions in the Solid-State Lighting Phosphor Y3-xCexAl5O12
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Ram Seshadri, Guido Pintacuda, Géraldine Dantelle, Anna Llobet, Mahalingam Balasubramanian, Katharine Page, Bradley F. Chmelka, Andrew J. Pell, and Nathan C. George
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Analytical chemistry ,Sintering ,chemistry.chemical_element ,Phosphor ,General Medicine ,Yttrium ,law.invention ,Ion ,Solid-state lighting ,chemistry ,Aluminium ,law ,Activator (phosphor) ,Stoichiometry - Abstract
Ce-doped yttrium aluminum garnet (Ce:YAG), CexY3-xAl5O12 with x = 0—0.09, is prepared by solid state synthesis using stoichiometric amounts of Y2O3, Al2O3, and CeO2 plus an optimum of 5 wt% each of BaF2 and NH4F as sintering aids (alumina crucible, 1500 °C, 5 h, 5% H2/N2 atmosphere).
- Published
- 2013
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48. Polymorphism and magnetic properties of Li2MSiO4 (M = Fe, Mn) cathode materials
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Andrew J. Pell, Stefania Ferrari, Guido Pintacuda, Patrizia Canton, Piercarlo Mustarelli, Chiara Ferrara, Marcella Bini, Doretta Capsoni, Maria Cristina Mozzati, Bini, M, Ferrari, S, Ferrara, C, Mozzati, M, Capsoni, D, Pell, A, Pintacuda, G, Canton, P, Mustarelli, P, Dept Chem, University of Pavia, Dept Phys, Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia [Pavia] (CNISM), Università degli Studi di Pavia, ISA - Centre de RMN à très hauts champs, Institut des Sciences Analytiques (ISA), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Dept Mol Sci & Nanosyst, University of Ca’ Foscari [Venice, Italy], Cariplo Project 2011-0325, LABEX iMUST ANR-10-LABX-0064, and French Ministry for the Foreign Affairs 781569G
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Materials science ,Silicates, structure, NMR ,Analytical chemistry ,chemistry.chemical_element ,02 engineering and technology ,Manganese ,Crystal structure ,010402 general chemistry ,DFT ,01 natural sciences ,Article ,CAPACITY ,Magnetization ,Transition metal ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,SPECTRA ,LI2FESIO4 ,LI2MNSIO4 ,Multidisciplinary ,021001 nanoscience & nanotechnology ,LI-ION BATTERIES ,SOLID-STATE NMR ,0104 chemical sciences ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,MAS ,chemistry ,Solid-state nuclear magnetic resonance ,Polymorphism (materials science) ,0210 nano-technology ,Néel temperature ,Powder diffraction - Abstract
International audience; Transition metal-based lithium orthosilicates (Li2MSiO4, M=Fe, Ni, Co, Mn) are gaining a wide interest as cathode materials for lithium-ion batteries. These materials present a very complex polymorphism that could affect their physical properties. In this work, we synthesized the Li2FeSiO4 and Li2MnSiO4 compounds by a sol-gel method at different temperatures. The samples were investigated by XRPD, TEM, Li-7 MAS NMR, and magnetization measurements, in order to characterize the relationships between crystal structure and magnetic properties. High-quality Li-7 MAS NMR spectra were used to determine the silicate structure, which can otherwise be hard to study due to possible mixtures of different polymorphs. The magnetization study revealed that the Neel temperature does not depend on the polymorph structure for both iron and manganese lithium orthosilicates.
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- 2013
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49. 13C-detected through-bond correlation experiments for protein resonance assignment by ultra-fast MAS solid-state NMR
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Lyndon Emsley, Isabella C. Felli, Anne Lesage, Roberta Pierattelli, Guido Pintacuda, Amy L. Webber, Emeline Barbet-Massin, Michael J. Knight, Andrew J. Pell, ISA - Centre de RMN à très hauts champs, Institut des Sciences Analytiques (ISA), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Dept Chem Ugo Schiff, Università degli Studi di Firenze = University of Florence (UniFI), Magnet Resonance Ctr CERM, Agence Nationale de la Recherche (ANR 08-BLAN-0035-01 et 10-BLAN-713-01), Ente Cassa di Risparmio di Firenze ( Egide 22397RJ et 26000XF), Universita Italo-Francese 26000XF, European Commission, EC (BioNMR) 261863, European Project, Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), and Università degli Studi di Firenze = University of Florence [Firenze] (UNIFI)
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J-coupling ,Time Factors ,C-13 ,Analytical chemistry ,010402 general chemistry ,01 natural sciences ,Homonuclear molecule ,paramagnetism ,MICROCRYSTALLINE PROTEIN ,Paramagnetism ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,solid-state nuclear magnetic resonance spectroscopy ,magic angle spinning ,Magic angle spinning ,Peptide bond ,Physical and Theoretical Chemistry ,Nuclear Magnetic Resonance, Biomolecular ,J COUPLING-CONSTANTS ,PROTONLESS NMR ,Carbon Isotopes ,PARAMAGNETIC METALLOPROTEINS ,010405 organic chemistry ,Chemistry ,Resonance ,Proteins ,CORRELATION SPECTROSCOPY ,superoxide dismutase ,Atomic and Molecular Physics, and Optics ,3. Good health ,0104 chemical sciences ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,Crystallography ,ANGLE-SPINNING NMR ,Solid-state nuclear magnetic resonance ,RESOLUTION ,CROSS-POLARIZATION ,ZINC SUPEROXIDE-DISMUTASE ,Two-dimensional nuclear magnetic resonance spectroscopy - Abstract
International audience; We present two sequences which combine ((1)H,(15)N) and ((15)N,(13)C) selective cross-polarization steps with an efficient variant of the J-based homonuclear transfer scheme, in which a spin-state-selective (S(3)E) block is incorporated to improve both resolution and sensitivity in the direct (13)C dimension. We propose these two sequences as a part of a suite of four N-C correlation experiments allowing for the assignment of protein backbone resonances in the solid state. We illustrate these experiments under ultra-fast magic angle spinning conditions on two samples of microcrystalline dimeric human superoxide dismutase (SOD, 153×2 amino acids), in its diamagnetic ("empty", Zn(II)) and paramagnetic (Cu(II), Zn(II)) states.
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- 2012
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50. Biomolecular Solid-State NMR/Basics
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Guido Pintacuda, Emeline Barbet-Massin, ISA - Centre de RMN à très hauts champs, Institut des Sciences Analytiques (ISA), Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), and I. Bertini, K. S. McGreevy and G. Parigi
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sample preparation ,010405 organic chemistry ,Chemistry ,Cross polarization ,Analytical chemistry ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Nanotechnology ,Nuclear magnetic resonance spectroscopy ,010402 general chemistry ,01 natural sciences ,Homonuclear molecule ,0104 chemical sciences ,Characterization (materials science) ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,Solid-state nuclear magnetic resonance ,Heteronuclear molecule ,homonuclear recoupling ,probe and magnet technology ,magic angle spinning ,heteronuclear decoupling ,Magic angle spinning ,solid-state NMR ,cross-polarization ,radiofrequency irradiation ,Decoupling (electronics) - Abstract
International audience; Solid-state NMR spectroscopy has significantly grown in recent years thanks to combined progress in sample preparation, probe and magnet technology, and radiofrequency irradiation schemes; the field is now open to the structural characterization of systems that are highly pertinent to many areas of modern biology. This chapter presents an outline of the basic steps in the magic angle spinning solid-state NMR experiments available today - cross-polarization, heteronuclear decoupling, and homonuclear recoupling.
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- 2012
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- View/download PDF
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