68 results on '"Da Duan"'
Search Results
2. A chemoenzymatic strategy for site-selective functionalization of native peptides and proteins
- Author
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Anna Fryszkowska, Chihui An, Oscar Alvizo, Goutami Banerjee, Keith A. Canada, Yang Cao, Duane DeMong, Paul N. Devine, Da Duan, David M. Elgart, Iman Farasat, Donald R. Gauthier, Erin N. Guidry, Xiujuan Jia, Jongrock Kong, Nikki Kruse, Katrina W. Lexa, Alexey A. Makarov, Benjamin F. Mann, Erika M. Milczek, Vesna Mitchell, Jovana Nazor, Claudia Neri, Robert K. Orr, Peter Orth, Eric M. Phillips, James N. Riggins, Wes A. Schafer, Steven M. Silverman, Christopher A. Strulson, Nandhitha Subramanian, Rama Voladri, Hao Yang, Jie Yang, Xiang Yi, Xiyun Zhang, and Wendy Zhong
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Multidisciplinary ,Lysine ,Humans ,Insulin ,Amino Acid Sequence ,Penicillin Amidase ,Peptides ,Protein Engineering - Abstract
The emergence of new therapeutic modalities requires complementary tools for their efficient syntheses. Availability of methodologies for site-selective modification of biomolecules remains a long-standing challenge, given the inherent complexity and the presence of repeating residues that bear functional groups with similar reactivity profiles. We describe a bioconjugation strategy for modification of native peptides relying on high site selectivity conveyed by enzymes. We engineered penicillin G acylases to distinguish among free amino moieties of insulin (two at amino termini and an internal lysine) and manipulate cleavable phenylacetamide groups in a programmable manner to form protected insulin derivatives. This enables selective and specific chemical ligation to synthesize homogeneous bioconjugates, improving yield and purity compared to the existing methods, and generally opens avenues in the functionalization of native proteins to access biological probes or drugs.
- Published
- 2022
3. Recovery and recycling of solvent of counter‐current chromatography: The sample of isolation of zeaxanthin in the Lycium barbarum L. fruits
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Yuan Gong, Jianfei Liu, Dong Pei, Duolong Di, Kaijun Quan, Xin-Yi Huang, Sun Xiao, and Wen‐ Da Duan
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Filtration and Separation ,02 engineering and technology ,01 natural sciences ,Analytical Chemistry ,chemistry.chemical_compound ,Countercurrent chromatography ,Zeaxanthins ,Present method ,medicine ,Countercurrent Distribution ,Chromatography, High Pressure Liquid ,Solvent system ,Chromatography ,biology ,Plant Extracts ,010401 analytical chemistry ,Lycium ,021001 nanoscience & nanotechnology ,biology.organism_classification ,0104 chemical sciences ,Solvent ,Zeaxanthin ,chemistry ,Fruit ,Solvents ,0210 nano-technology ,Activated carbon ,medicine.drug - Abstract
An efficient method of recovering and recycling solvent for counter-current chromatography was established by which zeaxanthin was separated from Lycium barbarum L. fruits. A column with activated carbon combined with high performance counter-current chromatography formed the recovering and recycling solvent system. Using the solvent system of n-hexane-ethyl acetate-ethanol-water (8:2:7:3, v/v) from the references, five injections were performed with an almost unchanged purity of zeaxanthin (80.9, 81.2, 81.5, 81.3, and 80.2% respectively) in counter-current chromatography separation. Meanwhile, the mobile phase reduced by half than conventional counter-current chromatography. By this present method, an effective improvement of counter-current chromatography solvent utilization was achieved.
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- 2021
4. Correction for: Hypoxia-preconditioned olfactory mucosa mesenchymal stem cells abolish cerebral ischemia/reperfusion-induced pyroptosis and apoptotic death of microglial cells by activating HIF-1α
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Yan Huang, Fengbo Tan, Yi Zhuo, Jianyang Liu, Jialin He, Da Duan, Ming Lu, and Zhiping Hu
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Aging ,Cell Biology - Published
- 2022
5. Chiral counter‐current chromatography: A survey of its instrument, mechanism, procedure, and applications
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Wen-Da Duan, Duolong Di, and Xin-Yi Huang
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Pharmacology ,010405 organic chemistry ,business.industry ,Chemistry ,Centrifugal partition chromatography ,Organic Chemistry ,010402 general chemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Analytical Chemistry ,Chiral column chromatography ,Countercurrent chromatography ,Drug Discovery ,Process engineering ,business ,Spectroscopy - Abstract
The chiral separation by counter-current chromatography has made great progress in the past three decades. It has become increasingly popular in the field of chiral separation, and many applications have been introduced during the last years. This review mainly focuses on the current topics, applications, and trends in chiral separation by counter-current chromatography. It contains the development of modern counter-current chromatography apparatus, theory of counter-current chromatography, overview of applications of chiral counter-current chromatography enantioseparation, its current situation, and challenges. At last, some conclusions and perspectives also have been discussed in this review.
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- 2020
6. Effects of Hypoxia on Differentiation of Mesenchymal Stem Cells
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Wei Chen, Da Duan, Ming Lu, and Yi Zhuo
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Mesenchymal stem cell ,Medicine (miscellaneous) ,Cell Differentiation ,Mesenchymal Stem Cells ,General Medicine ,Biology ,Hypoxia (medical) ,Chondrogenesis ,Umbilical cord ,Cell Hypoxia ,In vitro ,Cell biology ,medicine.anatomical_structure ,Osteogenesis ,Adipogenesis ,Placenta ,medicine ,Animals ,Humans ,Bone marrow ,medicine.symptom ,Cell Proliferation - Abstract
Mesenchymal Stem Cells (MSCs) are distributed in many parts of the human body, including the bone marrow, placenta, umbilical cord, fat, and nasal mucosa. One of the unique features of MSCs is their multidirectional differentiation potential, including the ability to undergo osteogenesis, adipogenesis, and chondrogenesis, and to produce neurons, endothelial cells, Schwann cells, medullary nucleus cells, cardiomyocytes, and alveolar epithelial cells. MSCs have thus become a hot research topic in recent years. Numerous studies have investigated the differentiation of MSCs into various types of cells in vitro and their application to numerous fields. However, most studies have cultured MSCs under atmospheric oxygen tension with an oxygen concentration of 21%, which does not reflect a normal physiological state, given that the oxygen concentration generally used in vitro is four to ten times that to which MSCs would be exposed in the body. We therefore review the growing number of studies exploring the effect of hypoxic preconditioning on the differentiation of MSCs.
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- 2020
7. An engineered β-galactosidase with improved stability and cross-correction for the potential treatment of GM1 Gangliosidosis via AAV gene therapy
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Charu Reddy, Ouma Onguka, Jacob Artz, Christopher Schmitt, Adam Grossman, Swetha Santosh, Oluwayomi Akinkugbe, Victoria Wong, Kahsay Gebretsadik, Faezeh Sedighi, Jinyan Tang, Elizabeth Del Greco, Grace S. Lee, Nikki Kruse, Chinping Chng, Da Duan, William C. Hallows, Joseph C. Chen, Hassibullah Akeefe, Adam P. Silverman, and Gjalt Huisman
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Endocrinology ,Endocrinology, Diabetes and Metabolism ,Genetics ,Molecular Biology ,Biochemistry - Published
- 2023
8. Design of an in vitro biocatalytic cascade for the manufacture of islatravir
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Edward C. Sherer, Junyong Jo, Holst M. Halsey, Jack Liang, Niki R. Patel, Agustina Rodriguez-Granillo, Christopher C. Nawrat, Aaron M. Whittaker, Canada Keith A, Margie Borra-Garske, Nicholas M. Marshall, Kevin R. Campos, Anna Fryszkowska, Yingju Xu, Paul N. Devine, Shane T. Grosser, Grant S. Murphy, Jovana Nazor, Matthew D. Truppo, Benjamin F. Mann, Jeffrey C. Moore, Sandra A. Robaire, Gregory Hughes, Scott J. Novick, Da Duan, Jacob Forstater, Joshua N. Kolev, Deeptak Verma, Kevin M. Maloney, Oscar Alvizo, Mark A. Huffman, Li Xiao, Mark McLaughlin, Leo A. Joyce, and Hao Yang
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Multidisciplinary ,Deoxyadenosines ,Chemistry ,Stereoisomerism ,Directed evolution ,Chemical synthesis ,Combinatorial chemistry ,In vitro ,Enzyme catalysis ,Pharmaceutical Preparations ,Cascade ,Biocatalysis ,Reverse Transcriptase Inhibitors ,Hiv treatment ,Biotechnology - Abstract
Maximal efficiency from enzyme cascades Enzymes are highly selective catalysts that can be useful for specific transformations in organic synthesis. Huffman et al. combined designer enzymes in a multistep cascade reaction (see the Perspective by O'Reilly and Ryan). The approach eliminates purification steps, recycles expensive cofactors, and couples favorable and unfavorable reactions. With the target molecule islatravir, an experimental HIV drug, they optimized five enzymes by directed evolution to be compatible with unnatural substrates and stable in the reaction conditions. Stereochemical purity was amplified at every enzymatic step, and the final synthesis was both atom economical and efficient. Science , this issue p. 1255 ; see also p. 1199
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- 2019
9. Extracellular vesicles derived from hypoxia-preconditioned olfactory mucosa mesenchymal stem cells enhance angiogenesis via miR-612
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Ping Chen, Lite Ge, Chengfeng Xun, Wenshui Li, Yi Zhuo, Ming Lu, Shengyu Jin, Da Duan, Zuo Liu, and Zhiping Hu
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Adult ,Male ,Angiogenesis ,medicine.medical_treatment ,Biomedical Engineering ,Pharmaceutical Science ,Medicine (miscellaneous) ,Mice, Nude ,Bioengineering ,Applied Microbiology and Biotechnology ,Flow cytometry ,chemistry.chemical_compound ,Paracrine signalling ,Olfactory mucosa ,Mice ,Young Adult ,Olfactory Mucosa ,Cell-Derived Microparticles ,Medical technology ,medicine ,Animals ,Humans ,Antagomir ,R855-855.5 ,EVs ,Mesenchymal stem cell ,medicine.diagnostic_test ,Neovascularization, Pathologic ,microRNA ,Growth factor ,Regeneration (biology) ,Research ,Mesenchymal Stem Cells ,Middle Aged ,Cell Hypoxia ,Cell biology ,MicroRNAs ,medicine.anatomical_structure ,chemistry ,Molecular Medicine ,Female ,TP248.13-248.65 ,Biotechnology - Abstract
Mesenchymal stem cells (MSCs) play important roles in tissue repair and regeneration, such as the induction of angiogenesis, particularly under hypoxic conditions. However, the molecular mechanisms underlying hypoxic MSC activation remain largely unknown. MSC-derived extracellular vesicles (EVs) are vital mediators of cell-to-cell communication and can be directly utilized as therapeutic agents for tissue repair and regeneration. Here, we explored the effects of EVs from human hypoxic olfactory mucosa MSCs (OM-MSCs) on angiogenesis and its underlying mechanism. EVs were isolated from normoxic (N) OM-MSCs (N-EVs) and hypoxic (H) OM-MSCs (H-EVs) using differential centrifugation and identified by transmission electron microscopy and flow cytometry. In vitro and in vivo, both types of OM-MSC-EVs promoted the proliferation, migration, and angiogenic activities of human brain microvascular endothelial cells (HBMECs). In addition, angiogenesis-stimulatory activity in the H-EV group was significantly enhanced compared to the N-EV group. MicroRNA profiling revealed a higher abundance of miR-612 in H-EVs than in N-EVs, while miR-612 inactivation abolished the N-EV treatment benefit. To explore the roles of miR-612, overexpression and knock-down experiments were performed using a mimic and inhibitor or agomir and antagomir of miR-612. The miR-612 target genes were confirmed using the luciferase reporter assay. Gain- and loss-of-function studies allowed the validation of miR-612 (enriched in hypoxic OM-MSC-EVs) as a functional messenger that stimulates angiogenesis and represses the expression of TP53 by targeting its 3′-untranslated region. Further functional assays showed that hypoxic OM-MSC-EVs promote paracrine Hypoxia-inducible factor 1-alpha (HIF-1α)-Vascular endothelial growth factor (VEGF) signaling in HBMECs via the exosomal miR-612-TP53-HIF-1α-VEGF axis. These findings suggest that hypoxic OM-MSC-EVs may represent a promising strategy for ischemic disease by promoting angiogenesis via miR-612 transfer. Graphical Abstract
- Published
- 2021
10. Rapid screening and separating two radical scavengers in Lycium barbarum L. by DPPH-HPLC analysis-combined dual-mode high-speed countercurrent chromatography
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Gaohong Wang, Dong Pei, Xiao-Feng Liu, Jianfei Liu, Wen-Da Duan, Duolong Di, and Xin-Yi Huang
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Hplc analysis ,Chromatography ,biology ,Chemistry ,DPPH ,Process Chemistry and Technology ,General Chemical Engineering ,Dual mode ,Filtration and Separation ,02 engineering and technology ,General Chemistry ,010501 environmental sciences ,biology.organism_classification ,01 natural sciences ,chemistry.chemical_compound ,Countercurrent chromatography ,020401 chemical engineering ,Lycium ,0204 chemical engineering ,0105 earth and related environmental sciences - Abstract
A target-guidance separation strategy composed of activity screening process with high-performance liquid chromatography and separating process with high-speed countercurrent chromatography (HSCCC)...
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- 2018
11. Counter-current chromatography melamine-modified column and its separation mechanism
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Xin-Yi Huang, Wen-Da Duan, Yuan Gong, Duolong Di, Dong Pei, and Kaijun Quan
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Chromatography ,Chemistry ,010401 analytical chemistry ,Intermolecular force ,Filtration and Separation ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Partition coefficient ,chemistry.chemical_compound ,Countercurrent chromatography ,Stevioside ,Enantiomer ,0210 nano-technology ,Melamine ,Chromatography column ,Column (data store) - Abstract
In this work, to further verify and develop the novel counter-current chromatography modified column separate mode, a melamine modified counter-current chromatography column was prepared. Meanwhile, the modified counter-current chromatography column was used to separate stevioside and rebaudioside A with the same partition coefficient in chosen solvent system to evaluate its separation efficiency. The results show that because of the presence of intermolecular forces between melamine and model compounds, better separation could be achieved on the modified column while it's almost impossible to be separated on the unmodified column. So the results of this research further show that column modified method is a possible approach to further increase the separation ability of counter-current chromatography. Take advantage of large sample handing capacity of counter-current chromatography, the mothed may have great potential to be an efficient method of separation and preparation enantiomer compounds.
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- 2018
12. A kinase-cGAS cascade to synthesize a therapeutic STING activator
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John A. McIntosh, Zhijian Liu, Brian M. Andresen, Nastaran Salehi Marzijarani, Jeffrey C. Moore, Nicholas M. Marshall, Margie Borra-Garske, Jennifer V. Obligacion, Patrick S. Fier, Feng Peng, Jacob H. Forstater, Matthew S. Winston, Chihui An, Wonsuk Chang, Jongwon Lim, Mark A. Huffman, Steven P. Miller, Fuh-Rong Tsay, Michael D. Altman, Charles A. Lesburg, Dietrich Steinhuebel, B. Wesley Trotter, Jared N. Cumming, Alan Northrup, Xiaodong Bu, Benjamin F. Mann, Mirlinda Biba, Kaori Hiraga, Grant S. Murphy, Joshua N. Kolev, Amanda Makarewicz, Weilan Pan, Iman Farasat, Rachel S. Bade, Kevin Stone, Da Duan, Oscar Alvizo, Donovan Adpressa, Erik Guetschow, Erik Hoyt, Erik L. Regalado, Steve Castro, Nelo Rivera, Joseph P. Smith, Fengqiang Wang, Alejandro Crespo, Deeptak Verma, Stephanus Axnanda, Zachary E. X. Dance, Paul N. Devine, David Tschaen, Keith A. Canada, Paul G. Bulger, Benjamin D. Sherry, Matthew D. Truppo, Rebecca T. Ruck, Louis-Charles Campeau, David Jonathan Bennett, Guy R. Humphrey, Kevin R. Campos, and Matthew L. Maddess
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Multidisciplinary ,Adenosine ,Guanosine ,Animals ,Membrane Proteins ,Interferons ,Nucleotidyltransferases ,Signal Transduction - Abstract
The introduction of molecular complexity in an atom- and step-efficient manner remains an outstanding goal in modern synthetic chemistry. Artificial biosynthetic pathways are uniquely able to address this challenge by using enzymes to carry out multiple synthetic steps simultaneously or in a one-pot sequence
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- 2021
13. Ischemic-hypoxic preconditioning enhances the mitochondrial function recovery of transplanted olfactory mucosa mesenchymal stem cells via miR-181a signaling in ischemic stroke
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Da Duan, Wenshui Li, Zhiping Hu, Ming Lu, Yi Zhuo, Wei Chen, Lite Ge, Jianyang Liu, Yan Huang, and Jialin He
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Male ,Aging ,Programmed cell death ,Ischemia ,Apoptosis ,miR-181a ,Mesenchymal Stem Cell Transplantation ,mesenchyma stem cells ,Olfactory mucosa ,Olfactory Mucosa ,medicine ,Animals ,Humans ,Ischemic Preconditioning ,Stroke ,Endoplasmic Reticulum Chaperone BiP ,Heat-Shock Proteins ,Ischemic Stroke ,Neurons ,business.industry ,Mesenchymal stem cell ,Pyroptosis ,Brain ,Cell Biology ,medicine.disease ,stroke ,Mitochondria ,Rats ,Transplantation ,Disease Models, Animal ,MicroRNAs ,medicine.anatomical_structure ,ischemic-hypoxic ,Proto-Oncogene Proteins c-bcl-2 ,Reperfusion Injury ,Cancer research ,business ,Reperfusion injury ,Research Paper - Abstract
Cerebral ischemia/reperfusion injury causes a series of intricate cascade reactions in brain tissue causing apoptosis and proinflammatory programmed cell death known as pyroptosis of nerve cells. The dysfunction of target organelle mitochondria plays a key role in the process of neuronal apoptosis and pyroptosis. Mesenchymal stem cells (MSCs) have been widely used in the experimental or clinical treatment of various ischemic diseases, but the therapeutic efficacy of MSCs on cerebral ischemia-reperfusion injury need to be improved. We successfully cultured olfactory mucosa MSCs (OM-MSCs) to obtain a better source of seed cells. In this way, the therapeutic potential of OM-MSCs transplantation has been evaluated for ischemic stroke using an optimized culture scheme in vitro. Ischemic-hypoxic preconditioned OM-MSCs (IhOM-MSCs) were used to treat a neuron model of oxygen-glucose deprivation/reperfusion and the middle cerebral artery occlusion in rats. These results demonstrated that IhOM-MSCs mediated the upregulation of the downstream target genes GRP78 and Bcl-2 by miR-181a to protect mitochondrial function and inhibit apoptosis and pyroptosis of neurons in the ischemia/reperfusion injury model. Thus, IhOM-MSCs transplantation may be an effective therapy of ischemic stroke in the future.
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- 2020
14. Olfactory Mucosa Mesenchymal Stem Cells Alleviate Cerebral Ischemia/Reperfusion Injury
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Jialin, He, Jianyang, Liu, Yan, Huang, Yi, Zhuo, Wei, Chen, Da, Duan, Xiangqi, Tang, Ming, Lu, and Zhiping, Hu
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Cell and Developmental Biology ,Ca2+ overload ,ischemic stroke ,SPCA1 ,olfactory mucosa mesenchymal stem cells ,Golgi apparatus stress ,Original Research - Abstract
Olfactory mucosa mesenchymal stem cells (OM-MSCs) have exhibited their effectiveness in central nervous system diseases and provided an appealing candidate for the treatment of ischemic stroke. Previous evidence have shown that Golgi apparatus (GA) secretory pathway Ca2+-ATPase isoform1 (SPCA1) was a potential therapeutic target for ischemic stroke. In this study, we explored the neuroprotective mechanism of OM-MSCs and its effect on the expression and function of SPCA1 during cerebral ischemia/reperfusion. Based on in vitro and in vivo experiments, we discovered that OM-MSCs attenuated apoptosis and oxidative stress in ischemic stroke models, reduced the cerebral infarction volume, and improved the neurologic deficits of rats. OM-MSCs also upregulated SPCA1 expression and alleviated Ca2+ overload and decreased the edema and dissolution of the GA in neurons. Moreover, we discovered that SPCA1 depletion in oxygen and glucose deprivation/reoxygenation (OGD/R)-treated N2a cells mitigated the protective effects of OM-MSCs. Altogether, OM-MSCs exerted neuroprotective effects in ischemic stroke probably via modulating SPCA1 and reducing the edema and dissolution of the GA in neurons.
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- 2020
15. Insight into the proteomic profiling of exosomes secreted by human OM-MSCs reveals a new potential therapy
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Jiaomei Qi, Yi Zhuo, Lang Long, Ming Lu, Chengfeng Xun, Feng Tang, Ping Chen, Li Hu, Lite Ge, Lu Wang, and Da Duan
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0301 basic medicine ,Proteomics ,Angiogenesis ,medicine.medical_treatment ,Mesenchymal stromal cells ,RM1-950 ,Exosomes ,Exosome ,03 medical and health sciences ,Paracrine signalling ,0302 clinical medicine ,Olfactory Mucosa ,medicine ,Humans ,Epidermal growth factor receptor ,Notch 2 ,Secretome ,Cell Proliferation ,Pharmacology ,biology ,Growth factor ,Gene Expression Profiling ,Mesenchymal stem cell ,Cell Differentiation ,Mesenchymal Stem Cells ,General Medicine ,Microvesicles ,Cell biology ,030104 developmental biology ,030220 oncology & carcinogenesis ,biology.protein ,Therapeutics. Pharmacology - Abstract
Mesenchymal stromal cells (MSCs) have been used for the treatment of neuronal injury and neurodegenerative diseases. Their underlying mechanism may involve increased secretion of paracrine factors, which promotes tissue repair. Presently, exosomes have been regarded as important components of paracrine secretion and paracrine factors. MSC exosomes represent a promising opportunity to develop novel cell-free therapy approaches. In this study, exosomes from nasal olfactory mucosa MSCs (OM-MSCs) were extracted and purified using ultracentrifugation, resulting in exosome diameters of 40–130 nm. Similar to other exosomes, OM-MSC exosomes were CD63- and CD81-positive and calnexin-negative. Functionally, OM-MSC exosomes promoted human brain microvascular endothelial cell (HBMEC) proliferation and migration. The present study analyzed the OM-MSC exosome paracrine proteome. A total of 304 exosome-associated proteins were identified by LC–MS/MS, including plasminogen activator inhibitor 1 (SERPINE 1), insulin-like growth factor binding protein family members (IGFBP 4 and 5), epidermal growth factor receptor (EGFR), neurogenic locus notch homolog protein 2 (NOTCH 2), apolipoprotein E (APOE), and heat shock protein HSP90-beta (HSP90AB1). These molecules are known to be important in neurotrophic, angiogenesis, cell growth, differentiation, apoptosis, and inflammation and are highly correlated with the mechanism of tissue repair and neural restoration. These observations may provide a basis for further evaluation of OM-MSC exosome potential as a novel therapeutic modality.
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- 2020
16. Full use of the liquid nature of the stationary phase: The development of elution-extrusion counter current chromatography
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Xin-Yi Huang, Dong Pei, Xiao Sun, Wen-Da Duan, Jianfei Liu, and Duolong Di
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Materials science ,Resolution (mass spectrometry) ,010405 organic chemistry ,business.industry ,Elution ,010401 analytical chemistry ,Filtration and Separation ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Countercurrent chromatography ,Stationary phase ,Extrusion ,Process engineering ,business - Abstract
Elution-extrusion counter current chromatography extrudes the most solute retained in the column with the highest possible peak resolution. It can greatly improve the hydrophobic window. In recent years, elution-extrusion counter current chromatography has received extensive attention in the separation of complex samples. This article first reviews the development and application of elution-extrusion counter current chromatography, including its origin, mechanism, advantages and disadvantages, and some representative applications. At the same time, this review also shared our visions and ideas on how to improve the elution-extrusion mode. This article aims to provide certain reference for the research of this technology.
- Published
- 2020
17. Effective on-line high-speed shear dispersing emulsifier technique coupled with high-performance countercurrent chromatography method for simultaneous extraction and isolation of carotenoids from Lycium barbarum L. fruits
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Zhang Xia, Duolong Di, Wen-Da Duan, Xin-Yi Huang, Jianfei Liu, Xiao Sun, Yuan Gong, and Dong Pei
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chemistry.chemical_classification ,Chromatography ,Magnetic Resonance Spectroscopy ,010405 organic chemistry ,Chemistry ,010401 analytical chemistry ,Extraction (chemistry) ,Filtration and Separation ,Nuclear magnetic resonance spectroscopy ,Lycium ,Mass spectrometry ,01 natural sciences ,Carotenoids ,Mass Spectrometry ,0104 chemical sciences ,Analytical Chemistry ,Solvent ,Zeaxanthin ,chemistry.chemical_compound ,Countercurrent chromatography ,Phase (matter) ,Carotenoid ,Countercurrent Distribution ,Chromatography, High Pressure Liquid - Abstract
An efficient combination strategy based on high-speed shear dispersing emulsifier technique and high-performance countercurrent chromatography was developed for on-line extraction and isolation of carotenoids from the fruits of Lycium barbarum. In this work, the high-speed shear dispersing emulsifier technique has been employed to extract crude extracts using the upper phase of high-performance countercurrent chromatography solvent system composed of n-hexane-dichloromethane-acetonitrile (10:4:6.5, v/v) as the extraction solvent. At the separation stage, the high-performance counter-current chromatography process adopts elution-extrusion mode and the upper phase of the solvent system as stationary phase (reverse-phase mode). As a result, three compounds including zeaxanthin, zeaxanthin monopalmitate, and zeaxanthin dipalmitate with purities of 89, 90, and 93% were successfully obtained in one extraction-separation operation within 120 min. The targeted compounds were analyzed and identified by high-performance liquid chromatography, mass spectrometry, and NMR spectroscopy. The results indicated that the present on-line combination method could serve as a simple, rapid, and effective way to achieve weak polar and unstable compounds from natural products.
- Published
- 2020
18. A simple gradient equilibrium method for better separation in countercurrent chromatography
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Dong Pei, Xin-Yi Huang, Wen-Da Duan, Duolong Di, Kaijun Quan, and Xing‐jun Xi
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Work (thermodynamics) ,Materials science ,Resolution (mass spectrometry) ,010401 analytical chemistry ,Separation (statistics) ,Thermodynamics ,Filtration and Separation ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Countercurrent chromatography ,Stationary phase ,Simple (abstract algebra) ,0210 nano-technology ,Separation time - Abstract
The stationary phase retention is one of the most important parameters in countercurrent chromatography. In this work, a simple gradient equilibrium method was developed to further improve the stationary phase retention based on the optimized condition in the traditional equilibrium model. Meanwhile, this novel gradient equilibrium method was used to separate three flavone model compounds and compared with the conventional isocratic equilibrium method to evaluate the separation efficiency. The results show that better resolution or shorter separation time could be achieved with gradient equilibrium compared to isocratic equilibrium. So this novel equilibrium method has enormous potential for obtaining a better separation or saving the separating time in the preparative separation of target compounds.
- Published
- 2018
19. Laryngeal mask versus endotracheal intubation for pre-hospital emergency airway management: a meta-analysis of randomized control studies
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Yuxiang Song, Shao-hua You, Ming-da Duan, Hao Li, Wen-gang Liu, Ai-sheng Hou, Yunliang Zhang, jiangbei cao, Xuan Zhang, and Min Liu
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business.industry ,Anesthesia ,Meta-analysis ,medicine.medical_treatment ,Medicine ,Airway management ,Endotracheal intubation ,business - Abstract
Background : Pre-hospital emergency airway management plays an important role in pre-hospital care. Laryngeal masks are increasingly employed for the airway management of pre-hospital critical patients and have achieved promising results. Although several randomized controlled trials have reported benefits, the efficacy of laryngeal masks in pre-hospital emergency airway management compared to endotracheal intubation have not been systematically reviewed. Methods: Electronic databases (PubMed, Cochrane Library, Embase, Scopus and CNKI) were searched up to April 2019 for related randomized studies. Outcome indicators included overall intubation success rates, the success rates of the first intubation, insertion time, resuscitation efficiency rates, SpO2 rise time, the blood gas index and adverse events. Two investigators selected the trials, extracted the data according to inclusion and exclusion criteria, and assessed the quality of the literature according to the Jada score. The meta-analysis was performed using stata14.0 software. Results: We included 31 human studies. Compared to endotracheal intubation, the application of laryngeal mask for pre-hospital emergencies enhanced the resuscitation efficiency rates [RR=1.20, 95% CI (1.06, 1.35), P
- Published
- 2019
20. <div>Effects of IGFBP-2 on proliferation and differentiation in neural stem cell line C17.2</div>
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Peiqi Huang, Da Duan, Yujia Deng, Ming Lu, Lei Wang, Lite Ge, Ting Yuan, Xiaohua Teng, Yi Zhuo, and Weiping Yan
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Chemistry ,Neurosphere ,Cellular differentiation ,Line (text file) ,Neural stem cell ,Cell biology - Published
- 2017
21. A New Spin on Antibody–Drug Conjugates: Trastuzumab-Fulvestrant Colloidal Drug Aggregates Target HER2-Positive Cells
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Brian K. Shoichet, Molly S. Shoichet, Da Duan, Ahil N. Ganesh, and Christopher K. McLaughlin
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Receptor, ErbB-2 ,Nanoparticle ,Protein Corona ,02 engineering and technology ,01 natural sciences ,ErbB-2 ,Engineering ,Drug Delivery Systems ,colloids ,Nanotechnology ,General Materials Science ,Bovine serum albumin ,Fulvestrant ,Cancer ,media_common ,Tumor ,Estradiol ,biology ,Drug discovery ,digestive, oral, and skin physiology ,self-assembly ,021001 nanoscience & nanotechnology ,5.1 Pharmaceuticals ,Drug delivery ,Development of treatments and therapeutic interventions ,0210 nano-technology ,Receptor ,Biotechnology ,medicine.drug ,Drug ,endocrine system ,Materials science ,media_common.quotation_subject ,Bioengineering ,Antineoplastic Agents ,Breast Neoplasms ,010402 general chemistry ,Article ,Cell Line ,protein corona ,Cell Line, Tumor ,Breast Cancer ,medicine ,Humans ,Nanoscience & Nanotechnology ,Chromatography ,Trastuzumab ,0104 chemical sciences ,Targeted drug delivery ,drug delivery ,Chemical Sciences ,biology.protein ,Biophysics ,Nanoparticles ,Generic health relevance ,cell targeting - Abstract
While the formation of colloidal aggregates leads to artifacts in early drug discovery, their composition makes them attractive as nanoparticle formulations for targeted drug delivery as the entire nanoparticle is composed of drug. The typical transient stability of colloidal aggregates has inhibited exploiting this property. To overcome this limitation, we investigated a series of proteins to stabilize colloidal aggregates of the chemotherapeutic, fulvestrant, including the following: bovine serum albumin, a generic human immunoglobulin G, and trastuzumab, a therapeutic human epidermal growth factor receptor 2 antibody. Protein coronas reduced colloid size to
- Published
- 2017
22. Internal Structure and Preferential Protein Binding of Colloidal Aggregates
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Brian K. Shoichet, Molly S. Shoichet, Da Duan, David A. Agard, Christopher K. McLaughlin, Jennifer Logie, Daniel Elnatan, and Hayarpi Torosyan
- Subjects
Small Angle ,0301 basic medicine ,Protein Folding ,Dispersity ,Plasma protein binding ,01 natural sciences ,Biochemistry ,Scattering ,Colloid ,chemistry.chemical_compound ,X-Ray Diffraction ,Trypsin ,Coloring Agents ,Fulvestrant ,Estradiol ,digestive, oral, and skin physiology ,General Medicine ,Sorafenib ,Biological Sciences ,Fluoresceins ,Small molecule ,Congo red ,Molecular Medicine ,Protein folding ,Trypsin Inhibitors ,Protein Binding ,Niacinamide ,Ribosomal Proteins ,endocrine system ,Multiangle light scattering ,Nanotechnology ,complex mixtures ,Article ,beta-Lactamases ,03 medical and health sciences ,Bacterial Proteins ,Dynamic light scattering ,Scattering, Small Angle ,Colloids ,010405 organic chemistry ,Phenylurea Compounds ,Organic Chemistry ,Proteins ,Congo Red ,DNA ,Dynamic Light Scattering ,0104 chemical sciences ,body regions ,030104 developmental biology ,chemistry ,Chemical Sciences ,Biophysics ,Generic health relevance ,Peptides - Abstract
Colloidal aggregates of small molecules are the most common artifact in early drug discovery, sequestering and inhibiting target proteins without specificity. Understanding their structure and mechanism has been crucial to developing tools to control for, and occasionally even exploit, these particles. Unfortunately, their polydispersity and transient stability have prevented exploration of certain elementary properties, such as how they pack. Dye-stabilized colloidal aggregates exhibit enhanced homogeneity and stability when compared to conventional colloidal aggregates, enabling investigation of some of these properties. By small-angle X-ray scattering and multiangle light scattering, pair distance distribution functions suggest that the dye-stabilized colloids are filled, not hollow, spheres. Stability of the coformulated colloids enabled investigation of their preference for binding DNA, peptides, or folded proteins, and their ability to purify one from the other. The coformulated colloids showed little ability to bind DNA. Correspondingly, the colloids preferentially sequestered protein from even a 1600-fold excess of peptides that are themselves the result of a digest of the same protein. This may reflect the avidity advantage that a protein has in a surface-to-surface interaction with the colloids. For the first time, colloids could be shown to have preferences of up to 90-fold for particular proteins over others. Loaded onto the colloids, bound enzyme could be spun down, resuspended, and released back into buffer, regaining most of its activity. Implications of these observations for colloid mechanisms and utility will be considered.
- Published
- 2016
23. Hypoxic and ischemic effects on gene and protein expression levels of paracrine factors by human olfactory mucosa mesenchymal-like stem cells
- Author
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Hao Wang, Ting Yuan, Chaying Su, Pei Wu, Xuan Li, Da Duan, Yi Zhuo, Ming Lu, Yujia Deng, and Lite Ge
- Subjects
Olfactory mucosa ,Paracrine signalling ,medicine.anatomical_structure ,nervous system ,Mesenchymal stem cell ,medicine ,Gene and protein expression ,Journal of Neurorestoratology ,Stem cell ,Biology ,Molecular biology ,Cell biology - Abstract
Ting Yuan,1* Yi Zhuo,1* Chaying Su,2 Xuan Li,1 Da Duan,1 Lite Ge,1 Pei Wu,1 Hao Wang,1 Yujia Deng,1 Ming Lu1 1Department of Neurosurgery, Second Affiliated Hospital of Hunan Normal University (163 Hospital of the People’s Liberation Army), Changsha, 2Department of Pediatrics, 169 Hospital of the People’s Liberation Army, Hengyang, Peoples’ Republic ofChina * These authors contributed equally to this work Abstract: Human olfactory mucosa mesenchymal-like stem cells (hOM-MSCs) secrete paracrine factors that may exert a protective effect on the cerebral ischemia. This study was done to determine the hypoxic and ischemic effects on the mRNA and protein expression level of paracrine factors by hOM-MSCs. The hOM-MSCs were cultured with 5% or 20% serum and under either normoxic (21% O2) or hypoxic (3% O2) conditions. Expression levels of mRNA and protein for vascular endothelial growth factor (VEGF), nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), glial cell line-derived neurotrophic factor (GDNF) and matrix metalloproteinase-2 (MMP-2) were determined by quantitative reverse transcription polymerase chain reaction and Western blot, respectively. Hypoxia reduced gene expression for VEGF (5% serum), GDNF, BDNF (5% serum) and NGF (5% serum) and increased it for BDNF (20% serum), MMP-2 (5% serum) and NGF (20% serum). Ischemia lowered gene expression for VEGF (hypoxia), GDNF, BDNF (hypoxia), MMP-2 (normoxia) and NGF (hypoxia) and increased it for VEGF (normoxia), BDNF (normoxia), MMP-2 (hypoxia) and NGF (normoxia).The protein level of these factors was almost in line with the gene level. These data demonstrate that serum and oxygen levels have a significant effect on the gene and protein expression levels of paracrine factors by hOM-MSCs, which will affect how hOM-MSCs interact in vivo during cerebral ischemia. Keywords: human olfactory mucosa mesenchymal-like stem cells, paracrine factors, hypoxia, ischemia, cerebral ischemia
- Published
- 2016
24. KREDs: Toward Green, Cost-Effective, and Efficient Chiral Alcohol Generation
- Author
-
Micklitsch Christopher Michael, Margie Borra-Garske, and Da Duan
- Subjects
Green chemistry ,chemistry.chemical_compound ,chemistry ,Biocatalysis ,Alcohol ,Protein engineering ,Directed evolution ,Combinatorial chemistry - Published
- 2019
25. Olfactory ensheathing cells facilitate neurite sprouting and outgrowth by secreting high levels of hevin
- Author
-
Yisong Liu, Lite Ge, Xiaohua Teng, Linyu Qi, Pei Wu, Ming Lu, Yi Zhuo, Da Duan, and Ping Chen
- Subjects
0301 basic medicine ,biology ,Chemistry ,Binding protein ,Growth factor ,medicine.medical_treatment ,Neural stem cell ,Cell biology ,Blot ,Transplantation ,Fibronectin ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,medicine ,biology.protein ,Olfactory ensheathing glia ,030217 neurology & neurosurgery ,Astrocyte - Abstract
Transplantation of olfactory ensheathing cells (OECs) has been shown to enhance synapse formation. However, the mechanisms underlying this effect are not completely understood. We performed profiling of the OEC and astrocyte secretomes via a proteomics approach, in case hevin secreted by astrocytes might be involved in the formation of synapses. Semi-quantitative proteomic analysis revealed that 25 proteins were highly expressed, and 22 were weakly expressed in OEC conditioned medium compared with astrocyte conditioned medium. These molecules are highly associated with neural differentiation and regeneration, enzyme regulatory activity, and growth factor binding. The quantification data of clusterin, fibronectin, hevin, insulin-like growth factor binding protein 2 and secreted protein acidic and rich in cysteine were further confirmed by western blotting. Moreover, the addition of hevin in the culture medium improved neurite sprouting and outgrowth of differentiated neural stem cells. The greater expression of hevin in OEC conditioned medium than in astrocyte conditioned medium was associated with a greater capacity of synaptic formation. Thus, our results indicate that soluble factors secreted by OECs provide a permissive environment for nerve repair, and hevin is one of the key molecules facilitating neurite sprouting and outgrowth.
- Published
- 2019
26. Clinical Observations of Autologous Olfactory Mucosa Mesenchymal Stem Cells As Treatment for Chronic Spinal Cord Injury
- Author
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Yi Zhuo, Jianyang Liu, Jialin He, Da Duan, Yan Huang, Lite Ge, Zhiping Hu, and Ming Lu
- Published
- 2019
27. Advances in Technology of Countercurrent Chromatography for Separation of Protein and Peptide
- Author
-
Xin-Yi Huang, Rui-Na Fan, Gaohong Wang, Kaijun Quan, Wen-Da Duan, Bing-Peng Wang, and Duo-Long Di
- Subjects
chemistry.chemical_classification ,Load capacity ,Chromatography ,010405 organic chemistry ,010401 analytical chemistry ,Irreversible adsorption ,Peptide ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Countercurrent chromatography ,chemistry ,Recovery rate ,Denaturation (biochemistry) - Abstract
Countercurrent chromatography is a kind of continuous and effective liquid-liquid partition chromatography with many unique characteristics such as large load capacity, no irreversible adsorption, high recovery rate, low risk of sample denaturation and so on, which has irreplaceable advantages in the separation of proteins and peptides. This review presents the advances of several kinds of new technology of countercurrent chromatography in the separation of proteins and peptides. The development prospect of this field is also discussed.
- Published
- 2016
28. Stable Colloidal Drug Aggregates Catch and Release Active Enzymes
- Author
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Brian K. Shoichet, Molly S. Shoichet, Christopher K. McLaughlin, Da Duan, Ahil N. Ganesh, and Hayarpi Torosyan
- Subjects
0301 basic medicine ,endocrine system ,complex mixtures ,01 natural sciences ,Biochemistry ,Article ,beta-Lactamases ,03 medical and health sciences ,chemistry.chemical_compound ,Colloid ,medicine ,Molecule ,Organic chemistry ,Colloids ,Particle Size ,010405 organic chemistry ,Organic Chemistry ,digestive, oral, and skin physiology ,General Medicine ,Biological Sciences ,Trypsin ,Small molecule ,0104 chemical sciences ,Congo red ,body regions ,030104 developmental biology ,chemistry ,Chemical engineering ,Ionic strength ,Chemical Sciences ,Particle-size distribution ,Molecular Medicine ,Particle size ,medicine.drug - Abstract
Small molecule aggregates are considered nuisance compounds in drug discovery, but their unusual properties as colloids could be exploited to form stable vehicles to preserve protein activity. We investigated the co-aggregation of seven molecules chosen because they had been previously intensely studied as colloidal aggregators, co-formulating them with bis-azo dyes. The co-formulation reduced colloid sizes to
- Published
- 2016
29. DPPH-HPLC-DAD analysis combined HSCCC for screening and identification of radical scavengers in Cynomorium songaricum Rupr
- Author
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Dong Pei, Xiaoting Li, Duolong Di, Gaohong Wang, Kaijun Quan, Wen-Da Duan, and Xin-Yi Huang
- Subjects
Electrospray ,Antioxidant ,Chromatography ,010405 organic chemistry ,DPPH ,Elution ,medicine.medical_treatment ,010401 analytical chemistry ,General Chemistry ,Carbon-13 NMR ,Mass spectrometry ,01 natural sciences ,High-performance liquid chromatography ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Oleuropein ,Materials Chemistry ,medicine - Abstract
A combinative method using the 2,2-diphenyl-1-picrylhydrazyl (DPPH)-high performance liquid chromatography (HPLC)-diode array detector (DAD) and high-speed counter-current chromatography (HSCCC) has been developed to screen and separate radical scavengers from the water extract of Cynomorium songaricum Rupr. Under the target guidance of the DPPH-HPLC-DAD experiment, 3 compounds were found to possess potential antioxidant activities. In order to identify the chemical structures of those compounds, the HSCCC method with a two-phase solvent system composed of ethyl acetate–water (1 : 1; v/v) was developed to isolate and purify the active compounds. Three compounds, 14.3 ± 0.7 mg of (+)-catechin (1), 15.2 ± 0.6 mg of (−)-epicatechin (2) and 11.3 ± 0.4 mg oleuropein (3) were obtained from 600 mg of crude sample with purities of 97.8%, 98.3% and 95.6%, respectively, as determined by HPLC. Their structures were elucidated by electrospray ionization-mass spectrometry (ESI-MS), 1H nuclear magnetic resonance (NMR) and 13C NMR. Among them, oleuropein was obtained from C. songaricum for the first time. The peak order of the three compounds in the HSCCC chromatogram was completely different from that in the HPLC chromatogram. Even both HSCCC and HPLC methods that are employed in this paper were in reversed phase mode. The elution order of HSCCC was determined by the hydrophobicity of the compounds, while the elution order of HPLC may be affected by some other interactions between the stationary phase and the compounds such as hydrogen bonding and steric effects. In addition, antioxidant activities of the three compounds were evaluated by the methods of DPPH radical scavenging assay. All of them showed high radical scavenging activities with the EC50 values being 16.97 ± 0.02, 11.15 ± 0.09 and 41.32 ± 0.20 μg mL−1 for (+)-catechin, (−)-epicatechin and oleuropein, respectively.
- Published
- 2016
30. Secretome of Olfactory Mucosa Mesenchymal Stem Cell, a Multiple Potential Stem Cell
- Author
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Ping Chen, Da Duan, Xiaohua Teng, Xijing He, Ming Lu, Lite Ge, Linyu Qi, Zijun Wang, Lei Wang, Yi Zhuo, Miao Jiang, and Zhenyu Zhao
- Subjects
0301 basic medicine ,Nervous system ,lcsh:Internal medicine ,Article Subject ,Proteomic Profiling ,Regeneration (biology) ,Mesenchymal stem cell ,Central nervous system ,Cell Biology ,Biology ,Proteomics ,Cell biology ,03 medical and health sciences ,Olfactory mucosa ,030104 developmental biology ,medicine.anatomical_structure ,Immunology ,medicine ,Stem cell ,lcsh:RC31-1245 ,Molecular Biology ,Research Article - Abstract
Nasal olfactory mucosa mesenchymal stem cells (OM-MSCs) have the ability to promote regeneration in the nervous systemin vivo. Moreover, with view to the potential for clinical application, OM-MSCs have the advantage of being easily accessible from patients and transplantable in an autologous manner, thus eliminating immune rejection and contentious ethical issues. So far, most studies have been focused on the role of OM-MSCs in central nervous system replacement. However, the secreted proteomics of OM-MSCs have not been reported yet. Here, proteins secreted by OM-MSCs cultured in serum-free conditions were separated on SDS-PAGE and identified by LC-MS/MS. As a result, a total of 274 secreted proteins were identified. These molecules are known to be important in neurotrophy, angiogenesis, cell growth, differentiation, and apoptosis, and inflammation which were highly correlated with the repair of central nervous system. The proteomic profiling of the OM-MSCs secretome might provide new insights into their nature in the neural recovery. However, proteomic analysis for clinical biomarkers of OM-MSCs needs to be further studied.
- Published
- 2016
31. The applicability of high-speed counter current chromatography to the separation of natural antioxidants
- Author
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Yuan Gong, Xiao Sun, Dong Pei, Wen-Da Duan, Duolong Di, Zhang Xia, and Xin-Yi Huang
- Subjects
Solvent system ,Chromatography ,Chemistry ,Biphenyl Compounds ,010401 analytical chemistry ,Organic Chemistry ,General Medicine ,Hydrogen-Ion Concentration ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Antioxidants ,0104 chemical sciences ,Analytical Chemistry ,Human health ,Countercurrent chromatography ,Picrates ,Solvents ,Humans ,Biochemical engineering ,Countercurrent Distribution ,Chromatography, High Pressure Liquid - Abstract
Antioxidants play an essential role in human health, as they have been found to be capable of lowering the incidence of many diseases, such as cancer and angiocardiopathy. Currently, more attention is paid to natural antioxidants because of the possible insecurity of synthetic antioxidants. Thus, the development of efficient techniques or methods to separate antioxidants from natural sources is requested urgently. High-speed counter current chromatography (HSCCC) is a unique support-free liquid-liquid chromatographic technique and has been widely applied in the field of separation of natural products. In this review, we summarize and analyze the related researches on the application of HSCCC in the separation of various natural antioxidants so far. The purpose of the article is to provide a certain theoretical support for the separation of natural antioxidants by HSCCC, and to make full use of advantages of HSCCC in the separation of bioactive components. In particular, some key problems associated with the separation strategies, the structural categories of natural antioxidants, solvent system choices, and the application of different elution modes in HSCCC separation, are summarized and commented. We expect that the content reviewed can offer more evidence for the development of the field of natural antioxidants separation, so as to achieve large-scale preparation of natural antioxidants.
- Published
- 2020
32. Research on Active Disturbance Rejection Control Strategy of Static Reactive Power Generator
- Author
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Yu Zhang, Hui Da Duan, Jing Bai, Jian Liu, Shi Qi Lu, and Chao Chao Li
- Subjects
Engineering ,Generator (computer programming) ,business.industry ,General Engineering ,PID controller ,Control engineering ,AC power ,Active disturbance rejection control ,Compensation (engineering) ,Control theory ,Control system ,Overshoot (signal) ,business ,Power control - Abstract
For the shortcomings of large overshoot and poor anti-disturbance ability when using the traditional PID control, ADRC control algorithm that is a nonlinear state error feedback control algorithm has been proposed in the sophisticated control system of static reactive power generator. The simulation results show that the algorithm can make the system reactive power compensation more quickly and more effectively, therefore the control strategy is feasible.
- Published
- 2015
33. Study on Urban Flood Control and Drainage in Beijing
- Author
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Zheng Da Duan, Jia Jie Wu, Sen Guo Zhan, and Bao Hui Men
- Subjects
Flood control ,Government ,Geography ,Beijing ,General Engineering ,Environmental engineering ,Thunderstorm ,Damages ,Drainage ,Water resource management - Abstract
On 21 July 2012, a huge thunderstorm hit Beijing, prompting the city government to act immediately to deal with the emergency. Yet great losses were caused, exposing problems about urban flood control and drainage, and making people take a new look at them. It is not uncommon for a rainfall of such a degree to happen in Asia. Comparatively speaking, however, unlike in Beijing, fewer damages are caused in Taiwan, Japan and the Philippines given the same situation. In this article, therefore, the problems arising after a heavy rainfall and their solutions will be discussed.
- Published
- 2014
34. Differentiation of human olfactory mucosa mesenchymal stem cells into photoreceptor cells in vitro
- Author
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Min-Li Huang, Wen Lu, Ming Lu, Zacharia Ackbarkhan, and Da Duan
- Subjects
CD34 ,Flow cytometry ,Olfactory mucosa ,lcsh:Ophthalmology ,medicine ,CD90 ,mesenchymal stem cells ,biology ,Cluster of differentiation ,medicine.diagnostic_test ,business.industry ,Mesenchymal stem cell ,differentiation ,In vitro ,Cell biology ,Ophthalmology ,Basic Research ,medicine.anatomical_structure ,human olfactory mucosa ,lcsh:RE1-994 ,Rhodopsin ,biology.protein ,sense organs ,business ,retinal cells - Abstract
Aim To investigate whether the human olfactory mucosa mesenchymal stem cells (OM-MSCs) can differentiate into photoreceptor cells in vitro. Methods Through the olfactory mucosa adherent method, olfactory mucosa was isolated, cultured and identified in vitro among mesenchymal stem cells. The cell surface markers were analyzed by flow cytometry, induced to differentiate into retinal photoreceptor cells in vitro, and the expression of rhodopsin was observed and identified by Immunofluorescence and Western blot methods. Results OM-MSCs from human were spindle cell-based, and showing radial colony arrangement. OM-MSCs were negative for CD34, CD45 and CD105, but positive for CD73 and CD90. Following induction, a strong positive reaction was produced by photoreceptor specific marker rhodopsin in the cells. Conslusion This novel finding demonstrates that OM-MSCs can be cultured and expanded in vitro. They possess biological characteristics of mesenchymal stem cells, and have the ability to be induced into retinal cells.
- Published
- 2017
35. [Hypoxic condition promotes olfactory mucosa mesenchymal stem cells to differentiate into neurons and underlying mechanisms]
- Author
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Yi, Zhuo, Ting, Yuan, Da, Duan, Lei, Wang, Lite, Ge, Pei, Wu, Hao, Wang, and Ming, Lu
- Subjects
Neurons ,Indazoles ,Potassium Channels ,Neurogenesis ,Blotting, Western ,Cell Differentiation ,Mesenchymal Stem Cells ,Flow Cytometry ,Hypoxia-Inducible Factor 1, alpha Subunit ,Olfactory Mucosa ,Tubulin ,Culture Media, Conditioned ,Glial Fibrillary Acidic Protein ,Hypoxia ,Neuroglia ,Cells, Cultured ,Signal Transduction - Abstract
To explore whether hypoxic condition could promote the olfactory mucosa mesenchymal stem cells (OM-MSCs) to differentiate into neurons with the olfactory ensheathing cells (OECs) supernatant and the potential mechanisms. Methods: The OM-MSCs and OECs were isolated and cultured, and they were identified by flow cytometry and immunofluorescence. The OM-MSCs were divided into three groups: a 3%O2+ HIF-1α inhibitors (lificiguat: YC-1) + OECs supernatant group (Group A) , a 3%O2 + OECs supernatant group (Group B) and a 21%O2 + OECs supernatant group (Control group). The neurons, which were differentiated from OM-MSCs, were assessed by immunofluorescence test. The mRNA and protein expression of hypoxia-inducible factor-1α (HIF-1α), βIII-tubulin and glial fibrillary acidic portein (GFAP) were detected by quantitative polymerase chain reaction (Q-PCR) and Western blot. The potassium channels were analyzed by patch clamp. Results: The neurons differentiated from OM-MSCs expressed the most amount of βIII-tubulin, and the result of Q-PCR showed that HIF-1α expression in the Group B was significantly higher than that in the other groups (all P0.05). Western blot result showed that the βIII-tubulin protein expression was significantly higher and GFAP protein expression was obviously decreased in the Group B (both P0.05). The patch clamp test confirmed that the potassium channels in the neurons were activated. Conclusion: Hypoxic condition can significantly increase the neuronal differentiation of OM-MSCs by the OECs supernatant and decrease the production of neuroglia cells, which is associated with the activation of HIF-1 signal pathway.目的:研究低氧微环境下利用嗅鞘细胞(olfactory ensheathing cells,OECs)上清液诱导嗅黏膜间充质干细胞(olfactory mucosa mesenchymal stem cells,OM-MSCs)更多地向神经元分化及其相关的机制。方法:分离培养OECs和OM-MSCs,应用流式细胞仪和免疫荧光方法分别进行鉴定;实验将OM-MSCs分为3%O2+低氧诱导因子-1α(hypoxia-inducible factor-1α,HIF-1α)抑制剂利非西呱(lificiguat,YC-1)+OECs上清诱导组(A组)、3%O2+OECs上清诱导组(B组)及21%O2+OECs上清诱导组(对照组)。采用免疫荧光检测分化后的神经元,采用定量聚合酶链反应(quantitative polymerase chain reaction,Q-PCR)和Western印迹分别检测HIF-1α的mRNA及 βIII-微管蛋白(βIII-tubulin)、胶质纤维酸性蛋白(glial fibrillary acidic portein,GFAP)的表达,再用膜片钳检测分化后的神经元钾离子通道开放情况。结果:实验各组相比较,B组OM-MSCs诱导后免疫荧光显示βIII-tubulin表达最多,Q-PCR显示B组HIF-1α表达明显增高(均P0.05);Western 印迹表明B组中βIII-tubulin蛋白表达显著增多,而胶质细胞标志物GFAP表达明显降低(均P0.05);且诱导分化后的神经元经膜片钳检测发现钾离子电流。结论:低氧微环境下的OM-MSCs经OECs上清液诱导能显著提高其向神经元分化的比例,并明显降低了神经胶质细胞的产生,且与细胞HIF-1α信号通路被激活有关。.
- Published
- 2017
36. Hypoxic culture promotes dopaminergic-neuronal differentiation of nasal olfactory mucosa mesenchymal stem cells via up-regulation of hypoxia inducible factor-1α
- Author
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Yi Zhuo, Lei Wang, Lite Ge, Xuan Li, Ping Chen, Da Duan, Xiaohua Teng, Miao Jiang, Kai Liu, Ting Yuan, Pei Wu, Hao Wang, Yujia Deng, Huali Xie, Ying Xia, and Ming Lu
- Subjects
Transplantation ,Biomedical Engineering ,Cell Biology - Published
- 2017
37. Power Transformers Fault Diagnosis Based on DRNN
- Author
-
Qiao Song Li and Hui Da Duan
- Subjects
Engineering ,Recursive prediction error ,law ,business.industry ,Diagonal recurrent neural network ,Dissolved gas analysis ,General Engineering ,Effective method ,Control engineering ,Transformer ,business ,law.invention - Abstract
In recent years, improved three-ratio is an effective method for transformer fault diagnosis based on Dissolved Gas Analysis (DGA). In this paper, diagonal recurrent neural network (DRNN) is used to resolve the online fault diagnosis problems for oil-filled power transformer based on DGA. To overcome disadvantages of BP algorithm, a new recursive prediction error algorithm (RPE) is used in this paper.In addition, to demonstrate the effectiveness and veracity of the proposed method, some cases are used in the simulation. The simulation results are satisfactory.
- Published
- 2014
38. Copper Electrolytic Cycle Reverse Current Control System
- Author
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Cheng Liu, Guang Da Chen, Lai Yong Zhang, De Jun Liu, and Hui Da Duan
- Subjects
Electrolysis ,Engineering ,Passivation ,business.industry ,General Medicine ,Electrolyte ,Anode ,law.invention ,Power (physics) ,Reliability (semiconductor) ,Control theory ,law ,Current (fluid) ,Process engineering ,business - Abstract
The paper describes the main factors of influencing increase cropper electrolysis current density.The main circuit and the control circuit of cycle reverse rectification power for copper electrolysis are designed. The simulation and practical results show the cycle reverse electrolysis power based active disturbance rejection controller has high reliability and precision of steady current and anti-disturbance,the density of electrolysis current can be increased and anode passivation can be decreased ,the effect is better especially for high impurities of anode sheets. the energy-saving and lower costs and high quality and increase of output are achieved. this technology is practicable.
- Published
- 2014
39. UII and UT in grouper: cloning and effects on the transcription of hormones related to growth control
- Author
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Da Duan, Haiyan Dong, Caiyun Sun, Jirong Jia, Bo Li, Wensheng Li, Bin Wang, and Chaobin Qin
- Subjects
Central Nervous System ,Fish Proteins ,medicine.medical_specialty ,Orange-spotted grouper ,Urotensins ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,Molecular Sequence Data ,Intracellular Space ,Gene Expression ,Receptors, G-Protein-Coupled ,Paracrine signalling ,chemistry.chemical_compound ,Endocrinology ,Insulin-Like Growth Factor II ,Internal medicine ,medicine ,Animals ,Humans ,Grouper ,Amino Acid Sequence ,Cloning, Molecular ,Insulin-Like Growth Factor I ,Receptor ,Autocrine signalling ,Sequence Homology, Amino Acid ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,Gene Expression Profiling ,Growth factor ,Ovary ,Fishes ,Receptors, Somatotropin ,biology.organism_classification ,Neurosecretory Systems ,HEK293 Cells ,Somatostatin ,chemistry ,Growth Hormone ,Calcium ,Female ,Urotensin-II - Abstract
Urotensin II (UII) is a cyclic peptide that was originally extracted from the caudal neurosecretory system (CNSS) of fish. UII is well known to exhibit cardiovascular, ventilatory, and motor effects in vertebrates. Studies have reported that UII exerts mitogenic effects and can act as an autocrine/paracrine growth factor in mammals. However, similar information in fish is limited. In this study, the full-length cDNAs of UII and its receptor (UT) were cloned and characterized in the orange-spotted grouper. UII and UT were expressed ubiquitously in various tissues in grouper, and particularly high levels were observed in the CNSS, CNS, and ovary. A functional study showed that UT was coupled with intracellular Ca2+ mobilization in HEK293 cells. Studies carried out using i.p. injections of UII in grouper showed the following: i) in the hypothalamus, UII can significantly stimulate the mRNA expression of ghrh and simultaneously inhibit the mRNA expression of somatostatin 1 (ss1) and ss2 3 h after injection; ii) in the pituitary, UII also significantly induced the mRNA expression of gh 6 and 12 h after injection; and iii) in the liver, the mRNA expression levels of ghr1/ghr2 and igf1/igf2 were markedly increased 12 and 3 h after the i.p. injection of UII respectively. These results collectively indicate that the UII/UT system may play a role in the promotion of the growth of the orange-spotted grouper.
- Published
- 2013
40. Oil-Filled Power Transformers Fault Diagnosis Based on Fuzzy-DRNN
- Author
-
Ying Ping Fan and Hui Da Duan
- Subjects
Engineering ,Artificial neural network ,business.industry ,Dissolved gas analysis ,Control engineering ,Hardware_PERFORMANCEANDRELIABILITY ,General Medicine ,Fuzzy logic ,law.invention ,law ,Diagonal recurrent neural network ,Control theory ,Effective method ,Dynamic neural network ,Transformer ,business - Abstract
In recent years, improved three-ratio is an effective method for transformer fault diagnosis based on Dissolved Gas Analysis (DGA). In this paper, a simple dynamic neural network named as diagonal recurrent neural network (DRNN) is used to resolve the online fault diagnosis problems for oil-filled power transformer based on DGA. Because of the characteristic of improved three-ratio boundary is lack of matching, fuzzy logic in fault diagnosis is presented also to deal with the data of the neural network inputs. DRNN is used to model the fault diagnosis structure, the fuzzy logic is used to improve the faults diagnose reliability. In addition, some cases are used to show the capability of the suggested method in oil-filled power transformers fault diagnosis.
- Published
- 2013
41. Control of Magnetic Suspension Linear Feed System
- Author
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Zhen Xiong Zhou, Hui Da Duan, and De Jun Liu
- Subjects
Condensed Matter::Soft Condensed Matter ,Nonlinear system ,Engineering ,Electronic speed control ,Disturbance (geology) ,business.industry ,Control theory ,Linear motion ,General Engineering ,Strong coupling ,Electromagnetic suspension ,Suspension (vehicle) ,business - Abstract
A magnetic suspension linear feed device has been introduced in this paper, it is consist of linear motion and suspension parts. The mathematical model of suspension system is modeled. Aiming at the suspension part which is an nonlinear and strong coupling system, the auto-disturbance rejection controller (ADRC) is used. The inner disturbance and outside disturbance is observed and compensated, the result of simulation indicates the suspension control A magnetic suspension linear feed device has been introduced in this paper, it is consist of linear motion and suspension parts. The mathematical model of suspension system is modeled. Aiming at the suspension part which is an nonlinear and strong coupling system, the auto-disturbance rejection controller (ADRC) is used. The inner disturbance and outside disturbance is observed and compensated, the result of simulation indicates the suspension control has better dynamic, static and robust characters by using the auto-disturbance rejection controller.
- Published
- 2012
42. Application of Stochastic Resonance in Digital Image Filtering
- Author
-
Yu Liu, Yu Xin Zhang, and Hui Da Duan
- Subjects
Optimization problem ,business.industry ,General Engineering ,Peak signal-to-noise ratio ,Digital image ,Robustness (computer science) ,Search algorithm ,Computer Science::Computer Vision and Pattern Recognition ,Median filter ,Computer vision ,Artificial intelligence ,business ,Aerial image ,Multiple ,Mathematics - Abstract
The principle, ideas, procedures and optimization problems of the filtering algorithm were presented in the article. First, the filtering algorithm procedures of aerial image based on stochastic resonance theory was introduced, then the curve of noise strength and peak signal to noise ratio (PSNR) was analyzed, a golden-section fast search algorithm was proposed and discussed as well to find out the maximum point of PSNR in the process of filtering. Experimental results indicate that the filtering method in this article is superior to other methods on high noise strength aerial image, and the stability and robustness are better than other methods . The multiples of filtering image’s PSNR is 1.2~1.4 times than other methods.
- Published
- 2012
43. Structure-based approach for identification of novel phenylboronic acids as serine-β-lactamase inhibitors
- Author
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Filomena De Luca, Jacopo Sgrignani, Giovanni Grazioso, Hayarpi Torosyan, Giorgio Colombo, Jean Denis Docquier, Fabio Prati, Beatrice Novati, and Da Duan
- Subjects
0301 basic medicine ,Virtual screening ,Models, Molecular ,Boronic acids ,Antibiotic resistance ,Beta-lactamase ,Carbapenemase ,Docking ,Extended-spectrum β-lactamase ,Drug Discovery3003 Pharmaceutical Science ,Computer Science Applications1707 Computer Vision and Pattern Recognition ,Physical and Theoretical Chemistry ,medicine.drug_class ,Protein Conformation ,In silico ,medicine.medical_treatment ,030106 microbiology ,Antibiotics ,Enterobacter ,Biology ,beta-Lactamases ,Microbiology ,Serine ,03 medical and health sciences ,Bacterial Proteins ,Drug Discovery ,polycyclic compounds ,medicine ,Escherichia coli ,Computer Simulation ,Binding Sites ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,biology.organism_classification ,Boronic Acids ,Computer Science Applications ,Extended-spectrum ?-lactamase ,030104 developmental biology ,Biochemistry ,Docking (molecular) ,beta-Lactamase Inhibitors ,Protein Binding - Abstract
Lactamases are bacterial enzymes conferring resistance to ?-lactam antibiotics in clinically-relevant pathogens, and represent relevant drug targets. Recently, the identification of new boronic acids (i.e. RPX7009) paved the way to the clinical application of these molecules as potential drugs. Here, we screened in silico a library of ~1400 boronic acids as potential AmpC ?-lactamase inhibitors. Six of the most promising candidates were evaluated in biochemical assays leading to the identification of potent inhibitors of clinically-relevant ?-lactamases like AmpC, KPC-2 and CTX-M-15. One of the selected compounds showed nanomolar K i value with the clinically-relevant KPC-2 carbapenemase, while another one exhibited broad spectrum inhibition, being also active on Enterobacter AmpC and the OXA-48 class D carbapenemase.
- Published
- 2016
44. Crystal structure of the Kar3-like kinesin motor domain from the filamentous fungus Ashbya gossypii
- Author
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Darlene Davis, John S. Allingham, Daniel J. Hnatchuk, Da Duan, and Jillian M. Brenner
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Molecular Sequence Data ,Mutant ,Saccharomyces cerevisiae ,Kinesins ,Biology ,Crystallography, X-Ray ,Biochemistry ,Protein Structure, Secondary ,Fungal Proteins ,Structure-Activity Relationship ,Ascomycota ,Structural Biology ,Microtubule ,Catalytic Domain ,Amino Acid Sequence ,Cloning, Molecular ,Molecular Biology ,Protein secondary structure ,Phylogeny ,Adenosine Triphosphatases ,Genetics ,biology.organism_classification ,Yeast ,Protein Structure, Tertiary ,Spindle apparatus ,Enzyme Activation ,Biophysics ,Kinesin ,Salt bridge ,Sequence Alignment ,Protein Binding - Abstract
Kar3 kinesins are microtubule (MT) minus-end-directed motors with pleiotropic functions in mitotic spindle formation and nuclear movement in budding and fission yeasts. A Kar3-like kinesin is also expressed by the filamentous fungus Ashbya gossypi, which exhibits different nuclear movement challenges from its yeast relatives. Presented here is a 2.35 Å crystal structure and enzymatic analysis of the AgKar3 motor domain (AgKar3MD). Compared to the previously published Saccharomyces cerevisiae Kar3MD structure (ScKar3MD), AgKar3MD displays differences in the conformation of some of its nucleotide-binding motifs and peripheral elements. Unlike ScKar3MD, the salt bridge between Switch I and Switch II in AgKar3MD is broken. Most of the Switch I, and the adjoining region of helix α3, are also disordered instead of bending into the active site cleft as is observed in ScKar3MD. These aspects of AgKar3MD are highly reminiscent of the ScKar3 R598A mutant that disrupts the Switch I-Switch II salt bridge and impairs MT-stimulated ATPase activity of the motor. Subtle differences in the disposition of secondary structure elements in the small lobe (β1a, β1b, and β1c) at the edge of the MD are also apparent even though it contains approximately the same number of residues as ScKar3. These differences may reflect the unique enzymatic properties we measured for this motor, which include a lower MT-stimulated ATPase rate relative to ScKar3, or they could relate to its interactions with different regulatory companion proteins than its budding yeast counterpart.
- Published
- 2011
45. Design of Sliding Mode Control Based on Nonlinear Observer for Nonlinear System
- Author
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Yan Tao Tian, De Jun Liu, and Hui Da Duan
- Subjects
Variable structure control ,Nonlinear system ,Observer (quantum physics) ,Control theory ,Computer science ,Trajectory ,Control engineering ,General Medicine ,State observer ,Separation principle ,Sliding mode control ,Alpha beta filter - Abstract
A new sliding mode controller for trajectory tracking of ball and plate system is proposed. In the controller, a nonlinear observer which is independent on plant model is used to observer the uncertainties and disturbance of the system. This paper proved that the nonlinear observer is convergence by properly selecting the parameters of observer. Sliding mode controller based on nonlinear observer is designed for the ball and plate system and it can guarantee stabilization of closed-loop system. The results of simulation and experiments indicate that the proposed nonlinear observer can observer uncertainties and disturbance of system, the proposed sliding mode control method is effectively to solve the problems of trajectory tracking in the nonlinear ,uncertain system.
- Published
- 2011
46. Repair of spinal cord injury by hypoxia-inducible factor-1a-expressing neural stem cells
- Author
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Da Duan, Lite Ge, Ming Lu, Zhenyu Zhao, Lei Wang, Bin Liu, and Xiaohua Teng
- Subjects
Neural stem cells ,business.industry ,Spinal cord injury ,General Medicine ,Hypoxia (medical) ,medicine.disease ,Neural stem cell ,nervous system diseases ,Proinflammatory cytokine ,Transplantation ,Injury Site ,nervous system ,Hypoxia-inducible factors ,Hypoxia-inducible factor-1a ,medicine ,biological phenomena, cell phenomena, and immunity ,medicine.symptom ,Neural regeneration ,business ,Neuroscience ,reproductive and urinary physiology - Abstract
Neural stem cell (NSC) transplantation is an effective method of giving a supplement of cells lost and promoting functional recovery after spinal cord injury (SCI). Nonetheless, owing to hostile environments at the injury site, such as ischaemic hypoxia conditions and inflammatory cytokines, poor cell survival and uncontrolled differentiation are consistent problems encountered following NSC transplantation in ischaemic neural tissue. Hypoxia-inducible factor-1a (HIF-1α) provides profound protection to NSCs against negative factors at the injury site. On the other hand, HIF-1 can induce NSCs to differentiate into neurons. We predict that transplanted NSCs modified by an HIF-1α gene would have a better efficacy for promoting neural regeneration and functional reconstruction.
- Published
- 2014
47. Structure-based discovery of opioid analgesics with reduced side effects
- Author
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Peter Gmeiner, Brian K. Kobilka, Viachaslau Bernat, Henry Lin, Dipendra K. Aryal, Da Duan, Gregory Corder, Brian K. Shoichet, Aashish Manglik, Ralf C. Kling, Anat Levit, Bryan L. Roth, Maria F. Sassano, Xi Ping Huang, Stefan Löber, Harald Hübner, John D. McCorvy, Grégory Scherrer, Daniela Dengler, and Patrick M. Giguère
- Subjects
0301 basic medicine ,Male ,Oliceridine ,Receptors, Opioid, mu ,Pain ,Thiophenes ,Pharmacology ,GTP-Binding Protein alpha Subunits, Gi-Go ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,Structure-Activity Relationship ,Drug Discovery ,medicine ,Animals ,Humans ,Urea ,Spiro Compounds ,Receptor ,G protein-coupled receptor ,Mice, Knockout ,Multidisciplinary ,Drug discovery ,business.industry ,Alkaloid ,HEK 293 cells ,Analgesics, Opioid ,Mice, Inbred C57BL ,Molecular Docking Simulation ,030104 developmental biology ,HEK293 Cells ,chemistry ,Opioid ,Receptors, Opioid ,Morphine ,Analgesia ,business ,medicine.drug - Abstract
Morphine is an alkaloid from the opium poppy used to treat pain. The potentially lethal side effects of morphine and related opioids-which include fatal respiratory depression-are thought to be mediated by μ-opioid-receptor (μOR) signalling through the β-arrestin pathway or by actions at other receptors. Conversely, G-protein μOR signalling is thought to confer analgesia. Here we computationally dock over 3 million molecules against the μOR structure and identify new scaffolds unrelated to known opioids. Structure-based optimization yields PZM21-a potent Gi activator with exceptional selectivity for μOR and minimal β-arrestin-2 recruitment. Unlike morphine, PZM21 is more efficacious for the affective component of analgesia versus the reflexive component and is devoid of both respiratory depression and morphine-like reinforcing activity in mice at equi-analgesic doses. PZM21 thus serves as both a probe to disentangle μOR signalling and a therapeutic lead that is devoid of many of the side effects of current opioids.
- Published
- 2015
48. An Aggregation Advisor for Ligand Discovery
- Author
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Gurgen Tumanian, Kristin T. Ziebart, Da Duan, Allison K. Doak, Teague Sterling, John J. Irwin, Hayarpi Torosyan, and Brian K. Shoichet
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Medicinal & Biomolecular Chemistry ,Nanotechnology ,Chemical ,Computational biology ,computer.software_genre ,Ligands ,Article ,beta-Lactamases ,News aggregator ,Organic molecules ,Bacterial protein ,Databases ,Medicinal and Biomolecular Chemistry ,Experimental testing ,Bacterial Proteins ,Drug Discovery ,Colloids ,Organic Chemicals ,Beta-Lactamase Inhibitors ,Likelihood Functions ,Organic chemicals ,Chemistry ,Ligand ,Aggregate (data warehouse) ,Organic Chemistry ,Pharmacology and Pharmaceutical Sciences ,Dynamic Light Scattering ,Drug Design ,Molecular Medicine ,beta-Lactamase Inhibitors ,computer ,Hydrophobic and Hydrophilic Interactions ,Databases, Chemical ,Software - Abstract
Colloidal aggregation of organic molecules is the dominant mechanism for artifactual inhibition of proteins, and controls against it are widely deployed. Notwithstanding an increasingly detailed understanding of this phenomenon, a method to reliably predict aggregation has remained elusive. Correspondingly, active molecules that act via aggregation continue to be found in early discovery campaigns and remain common in the literature. Over the past decade, over 12 thousand aggregating organic molecules have been identified, potentially enabling a precedent-based approach to match known aggregators with new molecules that may be expected to aggregate and lead to artifacts. We investigate an approach that uses lipophilicity, affinity, and similarity to known aggregators to advise on the likelihood that a candidate compound is an aggregator. In prospective experimental testing, five of seven new molecules with Tanimoto coefficients (Tc's) between 0.95 and 0.99 to known aggregators aggregated at relevant concentrations. Ten of 19 with Tc's between 0.94 and 0.90 and three of seven with Tc's between 0.89 and 0.85 also aggregated. Another three of the predicted compounds aggregated at higher concentrations. This method finds that 61 827 or 5.1% of the ligands acting in the 0.1 to 10 μM range in the medicinal chemistry literature are at least 85% similar to a known aggregator with these physical properties and may aggregate at relevant concentrations. Intriguingly, only 0.73% of all drug-like commercially available compounds resemble the known aggregators, suggesting that colloidal aggregators are enriched in the literature. As a percentage of the literature, aggregator-like compounds have increased 9-fold since 1995, partly reflecting the advent of high-throughput and virtual screens against molecular targets. Emerging from this study is an aggregator advisor database and tool ( http://advisor.bkslab.org ), free to the community, that may help distinguish between fruitful and artifactual screening hits acting by this mechanism.
- Published
- 2015
49. Surface modification of polytetrafluoroethylene column for two-stationary phase separations by counter-current chromatography
- Author
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Gaohong Wang, Duolong Di, Kaijun Quan, Yanjuan Liu, Xin-Yi Huang, Xiaoting Li, and Wen-Da Duan
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Chromatography ,Hydrogen bond ,Chemistry ,Photoelectron Spectroscopy ,Organic Chemistry ,Static Electricity ,Analytical chemistry ,Oxides ,General Medicine ,Biochemistry ,Chemistry Techniques, Analytical ,Analytical Chemistry ,Chiral column chromatography ,Contact angle ,Countercurrent chromatography ,Column chromatography ,Adsorption ,Surface modification ,Graphite ,Chromatography column ,Polytetrafluoroethylene ,Chromatography, Liquid - Abstract
To improve the separation capability of CCC, a novel solid-liquid two-stationary phases CCC (ASP-CCC) column was prepared employing graphene oxide (GO) conjugated poly-dopamine (PD) coating (GO/PD) as auxiliary stationary phase (ASP). The results of Scanning electron microscopy (SEM), contact angle and X-ray photoelectron spectroscopy (XPS) indicated that nanostructured GO and PD were successfully grafted on the inner wall of the PTFE column. Three alkaloid compounds were selected as the target analytes to evaluate the performance of the novel column. Because of the intermolecular force (hydrogen bond, electrostatic interaction and π-π interaction) between the ASP and model compounds, three analytes were well separated with this novel ASP-CCC column. Additionally, the novel column exhibited higher stationary phase retention ratio, about 8%, than original column without changing the chromatographic condition. Furthermore, the eluotropic sequence of analytes on novel column was in accordance with that in the original column. This suggested that the novel column is a CCC column with auxiliary stationary phase (ASP) in its own right, and the present separation mode is the combination of partition chromatography and adsorption chromatography.
- Published
- 2015
50. Colloidal aggregation and the in vitro activity of traditional Chinese medicines
- Author
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Da Duan, Brian K. Shoichet, Allison K. Doak, and Lyudmila Nedyalkova
- Subjects
Oxidative phosphorylation ,Biochemistry ,Malate dehydrogenase ,beta-Lactamases ,Article ,Small Molecule Libraries ,Inhibitory Concentration 50 ,Bacterial Proteins ,HIV Protease ,Malate Dehydrogenase ,Colloids ,Enzyme Inhibitors ,Medicine, Chinese Traditional ,chemistry.chemical_classification ,Dose-Response Relationship, Drug ,Drug discovery ,In vitro toxicology ,Assay ,General Medicine ,HIV Protease Inhibitors ,Small molecule ,In vitro ,Dynamic Light Scattering ,Enzyme ,chemistry ,Molecular Medicine ,Trypsin Inhibitors ,beta-Lactamase Inhibitors ,Drugs, Chinese Herbal - Abstract
Traditional Chinese Medicines (TCMs) have been the sole source of therapeutics in China for two millennia. In recent drug discovery efforts, purified components of TCM formulations have shown activity in many in vitro assays, raising concerns of promiscuity. Here, we investigated 14 bioactive small molecules isolated from TCMs for colloidal aggregation. At concentrations commonly used in cell-based or biochemical assay conditions, eight of these compounds formed particles detectable by dynamic light scattering and showed detergent-reversible inhibition against β-lactamase and malate dehydrogenase, two counter-screening enzymes. When three of these compounds were tested against their literature-reported molecular targets, they showed similar reversal of their inhibitory activity in the presence of detergent. For three of the most potent aggregators, contributions to promiscuity via oxidative cycling were investigated; addition of 1 mM DTT had no effect on their activity, which is inconsistent with an oxidative mechanism. TCMs are often active at micromolar concentrations; this study suggests that care must be taken to control for artifactual activity when seeking their primary targets. Implications for the formulation of these molecules are considered.
- Published
- 2015
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