69 results on '"Pirrotta, M"'
Search Results
2. A case of acquired haemophilia following H1N1 vaccination
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PIRROTTA, M. T., BERNARDESCHI, P., and FIORENTINI, G.
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- 2011
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3. CD34+/Ph+ cells are still detectable in chronic myeloid leukemia patients with sustained and prolonged complete cytogenetic remission during treatment with imatinib mesylate
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Bocchia, M, Ippoliti, M, Gozzetti, A, Abruzzese, E, Calabrese, S, Amabile, M, Pirrotta, M T, Crupi, R, Tozzuoli, D, Trawinska, M M, Defina, M, Martinelli, G, and Lauria, F
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- 2008
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4. Descriptors of Posidoniaoceanica meadows: Use and application
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Pergent-Martini, C., Leoni, V., Pasqualini, V., Ardizzone, G.D., Balestri, E., Bedini, R., Belluscio, A., Belsher, T., Borg, J., Boudouresque, C.F., Boumaza, S., Bouquegneau, J.M., Buia, M.C., Calvo, S., Cebrian, J., Charbonnel, E., Cinelli, F., Cossu, A., Maida, G. Di, Dural, B., Francour, P., Gobert, S., Lepoint, G., Meinesz, A., Molenaar, H., Mansour, H.M., Panayotidis, P., Peirano, A., Pergent, G., Piazzi, L., Pirrotta, M., Relini, G., Romero, J., Sanchez-Lizaso, J.L., Semroud, R., Shembri, P., Shili, A., Tomasello, A., and Velimirov, B.
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- 2005
- Full Text
- View/download PDF
5. The use of very high resolution images for studying Posidonia oceanica reefs
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Tomasello, Agostino, FEDERICA PAOLA CASSETTI, Savona, Andrea, Pampalone, V., Pirrotta, M., Calvo, Sebastiano, Geraldina Signa, CRISTINA ANDOLINA, Antonio Mazzola, Salvatrice Vizzini, Anselme, M., Lanza, S., Giovanni, R., Agostino Tomasello, Federica Cassetti, Andrea Savona, Vincenzo Pampalone, Maria Pirrotta, Sebastiano Calvo, Geraldina Signa, Cristina Andolina, Antonio Mazzola, Salvatrice Vizzini, Anselme Muzirafuti, Stefania Lanza, Giovanni Randazzo, Observatoire océanologique de Banyuls (OOB), and Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)
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seagrass, upper limit, drone, 3D model, dead matte, carbon sink, UAVs, atoll ,Settore BIO/07 - Ecologia ,[SDV]Life Sciences [q-bio] ,Settore GEO/04 - Geografia Fisica E Geomorfologia ,Settore BIO/03 - Botanica Ambientale E Applicata ,ComputingMilieux_MISCELLANEOUS - Abstract
Posidonia oceanica is an endemic Mediterranean seagrass that forms wide and dense meadows from the surface up to about 40 m depth. This species can develop a biogenic structure called matte, a typical terraced formation built up by itself, consisting of intertwined rhizomes, roots and sediment, which may allow shoots to reach the sea surface forming reefs (récif barrière), considered natural monuments. Posidonia oceanica reefs are particularly exposed to the ongoing increase in temperature and in storm frequency and intensity due to climate change, with negative repercussions on their conservation. Much more attention must be paid to the implementation of monitoring tools able to detect early signs of reef regression. In this study, the distribution of P. oceanica reefs located along southern coasts of Sicily (Italy, Mediterranean Sea) was investigated. A remote sensing approach was used to assess reef extension, morphological features (e.g., atolls), upper limit and occurrence of dead matte. In particular, very high-resolution drone images (~ 2 cm pixel size), combined with GPS field data, were used for 2D- and 3D-reconstruction of P. oceanica reefs. The 3D-model allowed to estimate bathymetrical distribution of P. oceanica reef enabling to achieve a more detailed and complete understanding of the P. oceanica reef architecture
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- 2020
6. Imatinib does not impair specific antitumor T-cell immunity in patients with chronic myeloid leukemia
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Bocchia, M, Abruzzese, E, Forconi, F, Ippoliti, M, Trawinska, M M, Pirrotta, M T, Raspadori, D, Tozzi, M, Gozzetti, A, and Lauria, F
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- 2006
7. Study on Posidonia oceanica (L.) Delile roots growing on different substrata by isto-anatomical and micro-morphological analysis
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TOMASELLO, A, PERRONE, R, COLOMBO, P, SULLI, A, PIRROTTA, M, CALVO, S, TOMASELLO, A, PERRONE, R, COLOMBO, P, SULLI, A, PIRROTTA, M, and CALVO, S
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Roots, Substrata, Seagrass - Abstract
Posidonia oceanica (L.) Delile grows on different substratum types, ranging from sand, which is easily penetrable by the roots, to rock, in which they are able to enter through crevices (1). In this study a survey was carried out on roots of plagiotropic rhizomes growing on sand (matte), and rock (dolonstone and calcarenite), to assess difference in morphological and anatomical features. In particular, for each substratum, nine rhizomes were randomly sampled by scuba diver at 10 meters of depth. In each rhizome histological and morphometric data (2, 3) were recorded on roots up to the second lateral order. Roots on rock were isolated from their substratum by chemical dissolution. Data analysis exhibited differences in roots anatomy and histology between substrata. The adventitious and second order lateral roots showed larger diameter on sandy sediment (from 3,111.88 ± 571.76 μm to 924.64 ± 146.11 μm) compared to ones growing on rocky substratum (from 2,695.14 ± 703.75 μm to 786.36 ± 168.18 μm). The outer cortex of roots was on average thicker on sand (229.41 ± 263.66 μm) than rock (123.49 ± 198.42 μm). Conversely, rhizodermis and mechanical hypodermis were thicker on rock (from 37.17 ± 5.97 μm to 233.19 ± 81.55 μm) than sand (from 30.66 ± 5.34 μm to 139.29 ± 74.04 μm). Similar trends in inner cortex and stele thickness were also found. In adventitious roots, the medulla was rich of well-lignified sclerenchymatic fibers, as they are responsible of the tensile strength, both on rock and sand, while variable results were obtained in first and second order lateral roots. Structures of adhesion have been detected (Fig. 1), very similar to ones discovered in seedlings (4), allowing to identify micro adhesive patterns. In particular, the root hairs genesis was reconstructed on rhizodermis, highlighting the attachment strategies to the substratum based on distal part of root hairs. The penetration strategy of adventitious roots (Fig. 2) was finally observed. Biochemical dissolution of carbonate cements in dolonstone or disintegration of particle components in calcarenite are used by the roots to penetrate into the rock for improving the anchoring capacity and the substrate exploration.
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- 2016
8. Reference growth charts for assessing growth performance of Posidonia oceanica (L.) Delile
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TOMASELLO, Agostino, PIRROTTA, M, SCIANDRA, M, MUGGEO VMR, CALVO S., TOMASELLO, A, PIRROTTA, M, SCIANDRA, M, MUGGEO VMR, and CALVO S.
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Lepidochronology, GLMM, Primary production - Abstract
Posidonia oceanica is considered a key species due to its different roles as primary producer, substrate for many species, shoreline erosion protector and long-term carbon store (1).The importance of P. oceanicahas stimulated several studies aimed at quantifying its status. In particular growth performance of rhizomes has become among the most used descriptors for monitoring changes of P. oceanicameadows induced by human or naturalexogenous factors (2). However, ability to detect any change of growth in space or in time is often confounded by natural age-induced variations, which involves serious interpretation problems (3). A general approach adopted to overcome this problem is to build growth charts as reference tool for comparison purposes. Charts describing patterns of biometric features conditioned to age are increasingly used as comparison tools, even if almost exclusively in Auxology(4). Their use can be extended to other disciplines, including ecological studies, although very large data sets are required for obtaining reliable estimates and curves should be flexible enough to account for non-linear growth pattern over age (5). In this work reference growth charts involving different P. oceanicagrowth performance measures (speed of growth and primary production of rhizomes) will be presented. Curves have been built using proper statistical frameworks (GLMM, Segmented and Quantile Regressions), based on more than 13000 annualgrowth data recorded by lepidochronology (6) on about 1600 shoots collected at 4–32 m depth range along Sicilian coasts.Growth patterns exhibited distinct trends as regards the relationships with depth: neither speed of growth nor primary production of rhizomes depended on depth until 14 m, while at deeper stands significant linear decrease by 3.5–2.0% for 1 m increase in depth was observed, due to light and sedimentation reduction. The considerable size of the dataset allowed to estimate the accurate shapes of the percentile curves (from 5thto 95th), revealing non monotonic relationships of growth with respect to shoot age with an initial increase followed by an overall decrease of 40% during the following years of the explored lifespan. The accompanying model-based classification procedures presented, will allow to obtain comparable results also when age of shoots is largely different (up to 20 years) (7). The growth charts may represent a noteworthy tool for researchers involved in studying of different aspects of seagrass monitoring. It is hoped that the proposed framework will facilitate assessment of growth performance status and comparative analysis of growth data from different populations around the Mediterranean Sea
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- 2016
9. References growth charts: a new practical tool for comparing Posidonia oceanic growth patterns accounting for age and depth
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TOMASELLO, A, SCIANDRA, M, MUGGEO, V, PIRROTTA, M, DI MAIDA, G, CALVO, Sebastiano, Guala, I, Fais, M, TOMASELLO, A, SCIANDRA, M, MUGGEO, V, PIRROTTA, M, DI MAIDA, G, and CALVO, S
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Lepidocronology, Growth, Age, Depth - Abstract
Over the past three decades an increasing amount of dating records dealing with Posidonia oceanica growth performance was incorporated into a variety of studies, from which a dualistic nature of the factors influencing seagrass growth arose. A large amount of literature focused on the role of exogenous factors in explaining rhizome growth variations, while only few studies invoked the importance of endogenous factors in driving growth. A particular attention was paid on the confounding role of shoot age, as endogenous factor, when the effect of exogenous variables on growth performance is analyzed. Shoot age confounding implies serious interpretation problems, since it is difficult to distinguish between the effectson P. oceanica growth due to spatio-temporal exogenous variations or simply to the unbalanced age structure of samples. A practical tool to overcome the problems linked to age confounding is to build references growth charts just used as yardstick for comparison purposes. References growth charts represent the distribution of a given biometric measurement changing with age, and typically are used in Auxology for establishing whether a generic individual at a given age lies within the ‘normal’ range. Their use can be extended to other disciplines, although very large data set are needed. In this study, P. oceanica references growth charts have been built using statistical methods, including GLMM, Segmented Regression and Nonparametric Quantile Regression, working on 4·104 lepidochronological measures collected along Sicilian coasts from 1 to 32 m depth. We detected two different trends of growth along depth, separated by a change point estimated at 15 m depth. Above and below this depth two distinct references growth charts have been built. Different curves of growth performance vs. age have been estimated at the 10th, 25th, 50th, 75th, 90th percentile, showing nonlinear patterns with the highest values of rhizome elongation and primary production at shoot age of about 4 years, followed by a monotonic decrease with aging. These results highlight the need to control for shoot age and recommend references growth charts as new tools to assess growth performance of P. oceanica samples coming from different depths and areas, accounting for their demographic structure.
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- 2015
10. Descriptors of Posidonia oceanica meadows: Use and application
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PERGENT-MARTINI C, LEONI V, PASQUALINI V, ARDIZZONE,GD, BALESTRI,E, BEDINI,R, BELLUSCIO,A, BELSHER,T, BORG,JA, BOUDOURESQUE,CF, BOUMAZA,S, BOUQUEGNEAU,JM, BUIA,MC, CALVO, S, CEBRIAN,J, CHARBONNEL,E, CINELLI,F, COSSU,A, DI MAIDA, G, DURAL,B, FRANCOUR,P, GOBERT,S, LEPOINT,G, MEINESZ,A, MOLENAAR,H, MANSOUR HM, PANAYOTIDIS,P, PEIRANO,A, PERGENT,G, PIAZZI,L, PIRROTTA,M, RELINI,G, ROMERO,J, SANCHEZ-LIZASO,J, SEMROUD,R, SHEMBRI,PJ, SHILI,A, B, TOMASELLO, A, VELIMIROV,B, PERGENT-MARTINI C, LEONI, V, PASQUALINI,V, ARDIZZONE,GD, BALESTRI,E, BEDINI,R, BELLUSCIO,A, BELSHER,T, BORG,JA, BOUDOURESQUE,CF, BOUMAZA,S, BOUQUEGNEAU,JM, BUIA,MC, CALVO, S, CEBRIAN,J, CHARBONNEL,E, CINELLI,F, COSSU,A, DI MAIDA, G, DURAL,B, FRANCOUR,P, GOBERT,S, LEPOINT,G, MEINESZ,A, MOLENAAR,H, MANSOUR HM, PANAYOTIDIS,P, PEIRANO,A, PERGENT,G, PIAZZI,L, PIRROTTA,M, RELINI,G, ROMERO,J, SANCHEZ-LIZASO,J, SEMROUD,R, SHEMBRI,PJ, SHILI,A, TOMASELLO, A, and VELIMIROV,B
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0106 biological sciences ,Standardization ,Process (engineering) ,Computer science ,media_common.quotation_subject ,General Decision Sciences ,Distribution (economics) ,Coastal biodiversity conservation ,010501 environmental sciences ,01 natural sciences ,limits ,advantages ,mediterranean sea ,bioindicator ,posidonia oceanica ,standardized methods ,Littoral zone ,Quality (business) ,14. Life underwater ,Marine ecosystem management ,Ecology, Evolution, Behavior and Systematics ,0105 earth and related environmental sciences ,media_common ,Valuation (finance) ,Indicators (Biology) ,Ecology ,biology ,business.industry ,010604 marine biology & hydrobiology ,Scale (chemistry) ,Environmental resource management ,Posidonia oceanica ,15. Life on land ,biology.organism_classification ,Posidonia oceanica, Mediterranean sea, Bioindicator, Standardized methods Advantages, Limits ,business - Abstract
This work benefited partly from the financial support of the European program ΓNTERREG IIIA Corsica, Sardinia. Tuscany, The conservation of the coastal marine environment requires the possession of information that enables the global quality of the environment to be evaluated reliably and relatively quickly. The use of biological indicators is often an appropriate method. Seagrasses in general, and Posidonia oceanica meadows in particular, are considered to be appropriate for biomonitoring because of their wide distribution, reasonable size, sedentary habit, easy collection and abundance and sensitivity to modifications of littoral zone. Reasoned management, on the scale of the whole Mediterranean basin, requires standardized methods of study, to be applied by both researchers and administrators, enabling comparable results to be obtained. This paper synthesises the existing methods applied to monitor P. oceanica meadows, identifies the most suitable techniques and suggests future research directions. From the results of a questionnaire, distributed to all the identified laboratories working on this topic, a list of the most commonly used descriptors was drawn up, together with the related research techniques (e.g. standardization, interest and limits, valuation of the results). It seems that the techniques used to study meadows are rather similar, but rarely identical, even though the various teams often refer to previously published works. This paper shows the interest of a practical guide that describes, in a standardized way, the most useful techniques enabling P. oceanica meadows to be used as an environmental descriptor. Indeed, it constitutes the first stage in the process., peer-reviewed
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- 2005
11. IGHV1-69/D3-16/J3 SUBSET 6 IS ASSOCIATED WITH INDOLENT DISEASE COURSE OF EARLY STAGE CLL (RAI O) INDEPENDENT OF UNMUTATED STATUS
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Forconi, F, Cencini, E, Rossi, D, Sozzi, E, Bomben, R, Marasca, R, Coscia, M, Massaia, M, Veronese, S, Tedeschi, A, Montillo, M, Fazzi, R, Petrini, M, Ciolli, S, Bosi, A, Dottori, R, Pirrotta, M, Carernani, A, DEL POETA, G, DEL GIUDICE, I, Santangelo, S, Laurenti, L, Efremov, D, Trentin, Livio, Bertoni, F, Gattei, V, Gaidano, G, and Lauria, F.
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- 2010
12. IGHV1-69/D3-16/J3 subset 6 is associate with indolent disease course of early stage CLL (RAI 0) independent of unmutated status
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Forconi, F., Cencini, E., Rossi, D., Sozzi, E., Bomben, R., Marasca, R., Coscia, Marta, Massaia, Massimo, Veronese, S., Tedeschi, A., Montillo, M., Fazzi, R., Petrini, M., Ciolli, S., Bosi, A., Dottori, R., Pirrotta, M., Caremani, A., Del Poeta, G., Del Giudice, I., Santangelo, S., Laurenti, L., Efremov, D., Trentin, L., Bertoni, F., Gattei, V., Gaidano, G., and Lauria, F.
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- 2010
13. Bcr-abl peptides for chronic myeloid leukemia
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MONICA BOCCHIA, Ippoliti, M., Pirrotta M, T., Abruzzese, E., Trawinska M, M., Francesco Forconi, Alessandro Gozzetti, Raspadori, D., and Lauria, Francesco
- Published
- 2005
14. A case of adult acute myelocytic leukemia (M5a) with a near-tetraploid karyotype characterized by monosomies 5 and 16 [2]
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Gozzetti, A., Tozzuoli, D., Crupi, R., Pirrotta, M. T., Bucalossi, A., Mazzotta, S., and Lauria, F.
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Male ,Leukemia ,Monocytic ,Ploidies ,Pair 16 ,Acute ,Chromosomes ,CD ,Monosomy ,Karyotyping ,Humans ,Antigens ,Pair 5 ,Aged ,Antigens, CD ,Chromosomes, Human, Pair 16 ,Chromosomes, Human, Pair 5 ,Leukemia, Monocytic, Acute ,Human - Published
- 2004
15. Lulwoana sp., a dark septate endophyte in roots of Posidonia oceanica (L.) Delile seagrass.
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Torta, L., Lo Piccolo, S., Piazza, G., Burruano, S., Colombo, P., Ottonello, D., Perrone, R., Di Maida, G., Pirrotta, M., Tomasello, A., Calvo, S., and Franken, P.
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ENDOPHYTIC fungi ,PLANT roots ,FUNGI diversity ,FUNGAL colonies ,NUCLEOTIDE sequencing ,SEAGRASSES ,POSIDONIA oceanica - Abstract
Posidonia oceanica is the most common, widespread and important monocotyledon seagrass in the Mediterranean Basin, and hosts a large biodiversity of species, including microorganisms with key roles in the marine environment. In this study, we ascertain the presence of a fungal endophyte in the roots of P. oceanica growing on different substrata (rock, sand and matte) in two Sicilian marine meadows. Staining techniques on root fragments and sections, in combination with microscope observations, were used to visualise the fungal presence and determine the percentage of fungal colonisation ( FC) in this tissue. In root fragments, statistical analysis of the FC showed a higher mean in roots anchored on rock than on matte and sand. In root sections, an inter- and intracellular septate mycelium, producing intracellular microsclerotia, was detected from the rhizodermis to the vascular cylinder. Using isolation techniques, we obtained, from both sampling sites, sterile, slow-growing fungal colonies, dark in colour, with septate mycelium, belonging to the dark septate endophytes ( DSEs). DNA sequencing of the internal transcribed spacer ( ITS) region identified these colonies as Lulwoana sp. To our knowledge, this is the first report of Lulwoana sp. as DSE in roots of P. oceanica. Moreover, the highest fungal colonisation, detected in P. oceanica roots growing on rock, suggests that the presence of the DSE may help the host in several ways, particularly in capturing mineral nutrients through lytic activity. [ABSTRACT FROM AUTHOR]
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- 2015
- Full Text
- View/download PDF
16. Influence of hydrodynamic conditions on the production and fate of Posidonia oceanica in a semi-enclosed shallow basin (Stagnone di Marsala, Western Sicily).
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La Loggia, G., Calvo, S., Ciraolo, G., Mazzola, A., Pirrotta, M., Sarà, G., Tomasello, A., and Vizzini, S.
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POSIDONIA oceanica ,SEAGRASSES ,STABLE isotopes ,ORGANIC compounds ,FOOD chains ,BIOGEOCHEMICAL cycles - Abstract
An integrated approach using hydrodynamic and transport numerical models, lepidochronology and stable isotope analysis was used to investigate how local hydrodynamic conditions influence the primary production and fate of the seagrass Posidonia oceanica in a Mediterranean semi-enclosed marine system (Stagnone di Marsala). The water mass exchange aptitude of different sectors of the basin was analysed, and data collected were used to select two sectors (colonized by Posidonia oceanica showing the lowest and highest water exchange values) for biological analyses. According to the mean dispersal coefficient differences simulated by the hydrodynamic model, growth rate and primary production of P. oceanica differed between sectors, with average values lower in the central sector where water exchange is lower than in the southern sector. Although P. oceanica coverage and primary production were higher in the southern sector, carbon and nitrogen stable isotope analysis suggests that the transfer of seagrass organic matter to higher trophic levels of the food web was higher in the central sector. The possibility of a link between hydrodynamism, production and fate of organic matter is proposed to explain the observed patterns. [ABSTRACT FROM AUTHOR]
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- 2004
- Full Text
- View/download PDF
17. Transplantation assessment of degraded Posidonia oceanica habitats: site selection and long-term monitoring
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Agostino Tomasello, Carmelina Bellavia, Cesare Costantini, Sebastiano Calvo, Antonino Scannavino, Giancarlo Bellissimo, G Sclafani, Maria Pirrotta, G. Di Maida, Carla Orestano, Filippo Luzzu, PIRROTTA, M, TOMASELLO, A, SCANNAVINO, A, DI MAIDA, G, LUZZU, F., BELLISSIMO, G, BELLAVIA, C, COSTANTINI, C, ORESTANO, C, SCLAFANI, G, and CALVO, S
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Settore BIO/07 - Ecologia ,Environmental Engineering ,restoration ,Site selection ,Aquatic Science ,Oceanography ,lcsh:Aquaculture. Fisheries. Angling ,Cutting ,Mediterranean Sea ,Transplanting ,transplant ,Ecology, Evolution, Behavior and Systematics ,Seagrass ,lcsh:SH1-691 ,biology ,Ecology ,Seagra ,Posidonia oceanica ,biology.organism_classification ,site selection ,Transplantation ,surgical procedures, operative ,Habitat ,Agronomy ,Zostera marina - Abstract
A model developed for Zostera marina was adapted and used to select suitable areas for Posidonia oceanica transplantation in the Gulf of Palermo, where recent rehabilitation programmes have reduced human pressure. This model consists of three steps: (1) habitat selection, by calculation of the Preliminary Transplant Suitability Index (PTSI); (2) field assessments and test-transplanting, to evaluate the site suitability and to estimate the effects of tearing on transplant units (about 50%); (3) identification of suitable restoration sites, by calculation of the Transplant Suitability Index (TSI). A new parameter was added to the literature model: the number of grids detached, which is linked to factors (hydrodynamic regime, anchoring, fishing) that have a potentially great effect on the final outcome of the transplant. Only one site (TSI = 16) in the Gulf of Palermo was indicated as potentially suitable for restoration with P. oceanica. In this site, a transplant of 40 m2 was implemented. From 2008 to 2014, transplant effectiveness was evaluated in terms of establishment, detachment and mortality of cuttings and shoot density. The long-term monitoring (6 years) allowed us to detect changes in the structural conditions of the transplanted meadow and to identify the possible turning point in P. oceanica recovery (2 years after transplanting). Moreover, 6 years after transplantation the P. oceanica meadow has exceeded the transplant shoot density of about 16%, with a mean and a maximum value of 11.6 and 17 shoots per cutting, respectively.
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- 2014
18. Reference growth charts for Posidonia oceanica seagrass: An effective tool for assessing growth performance by age and depth
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Mariangela Sciandra, Maria Pirrotta, Vito M. R. Muggeo, Germana Di Maida, Sebastiano Calvo, Agostino Tomasello, Tomasello, A., Sciandra, M., Muggeo, V., Pirrotta, M., Di Maida, G., and Calvo, S.
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0106 biological sciences ,Percentile ,Aging ,Dating method ,General Decision Sciences ,010603 evolutionary biology ,01 natural sciences ,Mediterranean sea ,Aquatic plant ecology ,Statistics ,Range (statistics) ,Confounding ,Segmented regression ,Seagrasse ,Ecology, Evolution, Behavior and Systematics ,biology ,Ecology ,Lepidochronology ,010604 marine biology & hydrobiology ,biology.organism_classification ,Seagrass ,Decision Sciences (all) ,Posidonia oceanica ,Shoot ,Breakpoint ,GLMM ,Quantile - Abstract
Growth performance of rhizomes has become among the most used descriptors for monitoring Posidonia oceanica seagrass dynamics and population status. However, ability to detect any change of growth in space or in time is often confounded by natural age-induced decline. To overcome this problem, we have produced reference growth charts, which in other areas are universally recognized as a very powerful tool for comparing growth of living beings during their ontogeny. Reference growth charts involving different P. oceanica growth performance measures (speed of growth and primary production of rhizomes) have been built using proper statistical frameworks (GLMM, Segmented and Quantile Regressions), based on more than 13 × 10 3 annual growth data recorded by lepidochronology on about 1600 shoots collected at 4–32 m depth range. Growth patterns exhibited distinct trends as regards the relationships with depth: neither speed of growth nor primary production of rhizomes depended on depth until 14 m, while at deeper stands significant linear decrease by 3.5–2.0% for 1 m increase in depth was observed. According to these results, the depth of 14 m was used as breakpoint for building two distinct sets of reference growth charts. The considerable size of the dataset allowed to estimate the accurate shapes of the percentile curves (5th, 10th, 25th, 50th, 75th, 90th, and 95th), revealing non monotonic relationships of growth performance with respect to shoot age with an initial increase followed by an overall decrease of about 40% during the following years of the explored lifespan. The accompanying model-based classification procedures described in this paper, allow to obtain comparable results also when age of shoots is largely different (up to 20 years). While this approach is flexible enough to produce satisfactory results using any growth measure (speed of growth and primary production of rhizomes, annual or cumulative), it maintains low complexity with trivial computations performed straightforwardly. The growth charts may represent a noteworthy tool for researchers involved in studying of different aspects of seagrass monitoring. It is hoped that the proposed framework will facilitate assessment of growth performance status and comparative analysis of growth data from different populations around the Mediterranean Sea.
- Published
- 2016
19. Mapping Posidonia oceanica lower limit combining high resolution instruments (SSS and MBS)
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LUZZU, Filippo, DI MAIDA, Germana, TOMASELLO, Agostino, PIRROTTA, Maria, SCANNAVINO, Antonino, BELLAVIA, Carmelina, BELLISSIMO, Giancarlo, COSTANTINI, Cesare, ORESTANO, Carla, SCLAFANI, Giovanni, CALVO, Sebastiano, Luzzu, F, Di Maida, G, Tomasello, A, Pirrotta, M, Scannavino, A, Bellavia, C, Bellissimo, G, Costantini, C, Orestano, C, Sclafani, G, and Calvo, S
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Posidonia oceanica, seagrass lower limit, Sicily, Side Scan Sonar, MultiBeam echo Sounder - Published
- 2014
20. Lulwoana sp., a dark septate endophyte (DSE) in roots of Posidonia oceanica (L.) Delile seagrass
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D Ottonello, Rosaria Perrone, Sebastiano Calvo, G. Di Maida, Gaia Piazza, Paolo Colombo, Agostino Tomasello, Maria Pirrotta, Santa Burruano, S. Lo Piccolo, Livio Torta, Torta, L., Lo Piccolo, S., Piazza, G., Burruano, S., Colombo, P., Ottonello, D., Perrone, R., Di Maida, G., Pirrotta, M., Tomasello, A., and Calvo, S.
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Septate ,Settore BIO/07 - Ecologia ,Molecular Sequence Data ,Plant Science ,Dark septate endophyte ,Plant Roots ,Lulwoana ,Dark septate mycelium ,Posidonia oceanica ,root ,Settore BIO/01 - Botanica Generale ,Ascomycota ,Botany ,Endophytes ,Mediterranean Sea ,Internal transcribed spacer ,Ecology, Evolution, Behavior and Systematics ,Mycelium ,Alismatales ,biology ,Settore BIO/02 - Botanica Sistematica ,Settore AGR/12 - Patologia Vegetale ,General Medicine ,biology.organism_classification ,Rhizodermis ,Colonisation ,Seagrass ,Italy - Abstract
Posidonia oceanica is the most common, widespread and important monocotyledon seagrass in the Mediterranean Basin, and hosts a large biodiversity of species, including microorganisms with key roles in the marine environment. In this study, we ascertain the presence of a fungal endophyte in the roots of P.oceanica growing on different substrata (rock, sand and matte) in two Sicilian marine meadows. Staining techniques on root fragments and sections, in combination with microscope observations, were used to visualise the fungal presence and determine the percentage of fungal colonisation (FC) in this tissue. In root fragments, statistical analysis of the FC showed a higher mean in roots anchored on rock than on matte and sand. In root sections, an inter- and intracellular septate mycelium, producing intracellular microsclerotia, was detected from the rhizodermis to the vascular cylinder. Using isolation techniques, we obtained, from both sampling sites, sterile, slow-growing fungal colonies, dark in colour, with septate mycelium, belonging to the dark septate endophytes (DSEs). DNA sequencing of the internal transcribed spacer (ITS) region identified these colonies as Lulwoana sp. To our knowledge, this is the first report of Lulwoana sp. as DSE in roots of P.oceanica. Moreover, the highest fungal colonisation, detected in P.oceanica roots growing on rock, suggests that the presence of the DSE may help the host in several ways, particularly in capturing mineral nutrients through lytic activity.
- Published
- 2014
21. Seagrasses along the Sicilian coasts
- Author
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Filippo Luzzu, Carla Orestano, Giovanni Furnari, Salvatrice Vizzini, Gianluca Sarà, Sebastiano Calvo, Maria Pirrotta, Antonio Mazzola, Mario Cormaci, G. Giaccone, Agostino Tomasello, Maria Cristina Buia, Germana Di Maida, Gabriele Procaccini, Antonino Scannavino, Francesco Cinelli, Calvo, S, Tomasello, A, Di Maida, G, Pirrotta, M, Buia, MC, Cinelli, F, Cormaci, M, Furnari, G, Giaccone, G, Luzzu, F, Mazzola, A, Orestano, C, Procaccini, G, Sarà, G, Scannavino, A, and Vizzini, S
- Subjects
0106 biological sciences ,Mediterranean climate ,Settore BIO/07 - Ecologia ,Genetic diversity ,Ecology ,biology ,010604 marine biology & hydrobiology ,Ecology (disciplines) ,Species distribution ,15. Life on land ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Mediterranean Basin ,language.human_language ,seagrass, Mediterranean, Sicily, distribution, status ,Seagrass ,Posidonia oceanica ,language ,General Earth and Planetary Sciences ,14. Life underwater ,Sicilian ,Ecology, Evolution, Behavior and Systematics ,General Environmental Science - Abstract
All seagrass species known from the Mediterranean basin have been recorded along the Sicilian coast, where studies have been carried out at a very local scale and information is fragmented or confined to the grey literature. The objective of this article is to summarise and evaluate current knowledge on seagrass species on the Sicilian coasts, providing an overview of species distribution, genetic diversity, biology and ecology, based on the literature and unpublished data. Most literature studies have been carried out on Posidonia oceanica meadows because of their wide distribution, complexity and ecological importance. In this study, the analyses carried out on P. oceanica structural and functional features show that the Sicilian meadows are in good condition with respect to the Mediterranean average, probably because of relatively low anthropogenic pressure and favourable ecological conditions. The available data on this species summarised in this article represent an important starting point from which to build effective plans for understanding levels of environmental threats and for supporting conservation strategies for these important ecosystems. Conversely, the limited information available on other seagrasses only allows the description of some structural and functional features, and does not permit to drive overall conclusions on their general health status.
- Published
- 2010
22. Influence of hydrothermal vents on phytobenthic communities in the Aeolian Islands (Tyrrhenian Sea): preliminary results
- Author
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BELLISSIMO, Giancarlo, DI MAIDA, Germana, PIRROTTA, Maria, TOMASELLO, Agostino, CALVO, Sebastiano, Rull Lluch, J, Bellissimo, G, Rull Lluch, J, Di Maida, G, Pirrotta, M, Tomasello, A, and Calvo, S
- Subjects
Settore BIO/07 - Ecologia ,benthic marine algae, epiphytes, shallow hydrothermal vents, Posidonia oceanica, Tyrrhenian Sea - Published
- 2010
23. Estimating Posidonia oceanica shoot length by using Multibeam Sonar System
- Author
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TOMASELLO, Agostino, DI MAIDA, Germana, LUZZU, Filippo, SCANNAVINO, Antonino, PIRROTTA, Maria, BELLAVIA, Carmelina, COSTANTINI, Cesare, ORESTANO, Carla, CALVO, Sebastiano, Tomasello, A, Di Maida, G, Luzzu, F, Scannavino, A, Pirrotta, M, Bellavia, C, Costantini, C, Orestano, C, and Calvo, S
- Subjects
Settore BIO/07 - Ecologia ,Multibeam Sonar System, Posidonia oceanica, shoot lenght, biotic indices, European Water Framework Directive (2000/60/EC) - Published
- 2010
24. Vulnerability of Posidonia oceanica meadow inside a coastal lagoon (Stagnone di Marsala – Western Sicily)
- Author
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DI MAIDA, Germana, TOMASELLO, Agostino, PIRROTTA, Maria, BELLAVIA, Carmelina, COSTANTINI, Cesare, CALVO, Sebastiano, Procaccini, G, Di Maida, G, Tomasello, A, Pirrotta, M, Bellavia, C, Costantini, C, Procaccini, G, and Calvo, S
- Subjects
Settore BIO/07 - Ecologia ,Settore BIO/18 - Genetica ,Coastal lagoon, Posidonia oceanica, atolls, genotipic diversity, lepidochronology - Published
- 2010
25. Effect of explosive shallow hydrothermal vents on δ13C and growth performance in the seagrass Posidonia oceanica
- Author
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VIZZINI, Salvatrice, TOMASELLO, Agostino, DI MAIDA, Germana, PIRROTTA, Maria, MAZZOLA, Antonio, CALVO, Sebastiano, Vizzini, S, Tomasello, A, Di Maida, G, Pirrotta, M, Mazzola, A, and Calvo, S
- Subjects
Settore BIO/07 - Ecologia ,aquatic plant ecology, carbon stable isotopes, CO2 emissions, hydrothermal fluids, lepidochronology, Mediterranean Sea, ocean acidification, seagrasses, temperature - Abstract
1. Explosive volcanic submarine activity is expected to affect seagrass communities due to sudden and dramatic changes in the physical and chemical features of sea water and sediments, with possibly large ecosystem effects. However, seagrass response to the harsh environmental conditions that arise due to explosive volcanism is as yet unexplored as it is not easy to predict when and where an eruption will occur. Here, we investigate the uptake of hydrothermal carbon within the seagrass Posidonia oceanica by the analysis of d13C and growth rates in tissue laid down before and after an exceptional and massive hydrothermal gas release in the Aeolian Islands (Italy, Mediterranean Sea). 2. Hydrothermal submarine activity was recorded by P. oceanica, which showed a large and persistent 13C-depletion in both scales and rhizomes in the site close to the eruption. Both increased CO2 availability and reduced carbon demand, as a consequence of stressful environmental conditions (e.g. light limitation due to turbidity, high temperature), combined to give much lower d13C signatures. Our results suggest that the explosive volcanism caused physiological stress in the seagrass, leading to a reduction in productivity, whereas slower, more diffuse release of hydrothermal CO2 is known to enhance seagrass productivity. 3. Synthesis. We analysed the effect of a sudden and large hydrothermal event on d13C interannual variations and growth of the seagrass P. oceanica. Our results confirm that shallow submarine hydrothermal vents can be used as natural laboratories for exploring biological responses to acute and often extreme environmental conditions. P. oceanica can record geological events by capturing CO2 derived from vent systems, with implications for habitat management to mitigate against raising CO2 levels and ocean acidification. This leads the way to further studies to evaluate the effects of hydrothermal carbon on shallow ecosystems.
- Published
- 2010
26. Posidonia oceanica living in enclosed coastal lagoon as model for testing the effect of climate change on organism near their limit of thermal tolerance
- Author
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CALVO, Sebastiano, DI MAIDA, Germana, LUZZU, Filippo, ORESTANO, Carla, PIRROTTA, Maria, SCANNAVINO, Antonino, TOMASELLO, Agostino, Calvo, S, Di Maida, G, Luzzu, F, Orestano, C, Pirrotta, M, Scannavino, A, and Tomasello, A
- Subjects
Settore BIO/07 - Ecologia ,Posidonia oceanica, coastal lagoon, thermal tolerance, global warming - Published
- 2009
27. Registration of past submarine massive outgassing events in Posidonia oceanica L. (Delile) through stable carbon isotopes
- Author
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VIZZINI, Salvatrice, DI MAIDA, Germana, PIRROTTA, Maria, TOMASELLO, Agostino, TRAMATI, Cecilia Doriana, TUMBARELLO, Valeria Antonia, MAZZOLA, Antonio, CALVO, Sebastiano, Vizzini, S, Di Maida, G, Pirrotta, M, Tomasello, A, Tramati, CD, Tumbarello, VA, Mazzola, A, and Calvo, S
- Subjects
Settore BIO/07 - Ecologia ,marine phanerogams, hydrothermal vents, CO2, bioindicator - Published
- 2009
28. The Stagnone of Marsala lagoon
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CALVO, Sebastiano, DI MAIDA, Germana, ORESTANO, Carla, PIRROTTA, Maria, TOMASELLO, Agostino, Calvo, S, Di Maida, G, Orestano, C, Pirrotta, M, and Tomasello, A
- Subjects
Settore BIO/07 - Ecologia ,Angiosperms, Mediterranean Sea, Sicily, Seaweeds, Stagnone of Marsala, Transitional waters, Tyrrhenian Sea - Abstract
The Stagnone of Marsala is an oligotrophic lagoon situated on the western coast of Sicily. The area has been under study since the mid-nineteenth century. Research has focused on its physiographic, chemical-physical, biological, ecological features and, particularly, on submerged vegetation. Its main biotic component, a meadow of Posidonia oceanica, is distributed among peculiar reef formations inside and outside the lagoon, which are extremely interesting from an ecological and environmental point of view. The seagrass grows near to its thermal and salinity tolerance level in the inner lagoon, where it is partially replaced by Cymodocea nodosa and Caulerpa prolifera meadows. Algal assemblages are characterised by both attached and/or unattached seaweeds that accumulate in areas of different extension, where they remain lying freely and slowly rolling on the seabed. Over the past few years, as a result of the global climate change, a noticeable reduction in the lagoon biodiversity has occurred due to decreased water exchange, and an increase in both confinement and temperature. Therefore, a consistent, suitable and well organised monitoring plan should be developed for the protection and the recovery of the Stagnone of Marsala lagoon.
- Published
- 2009
29. The use of high-resolution seismo-acoustic echosounder imaging for estimation carbon sink in P. oceanica dead matte
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LUZZU, Filippo, TOMASELLO, Agostino, DI MAIDA, Germana, ORESTANO, Carla, PIRROTTA, Maria, SCANNAVINO, Antonino, CALVO, Sebastiano, BELLAVIA, Carmelina, COSTANTINI, Cesare, Luzzu, F, Tomasello, A, Di Maida, G, Orestano, C, Pirrotta, M, Bellavia, C, Costantini, C, Scannavino, A, and Calvo, S
- Subjects
Settore BIO/07 - Ecologia ,P. oceanica, dead matte, seismo-acoustic echosounder, carbon sink - Published
- 2009
30. A new multivariate Biotic Index to assess Ecological Quality status of Mediterranean coastal waters
- Author
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TOMASELLO, Agostino, FICI, Luciano, DI MAIDA, Germana, LOVISON, Gianfranco, LUZZU, Filippo, ORESTANO, Carla, PIRROTTA, Maria, SCANNAVINO, Antonino, SCIANDRA, Mariangela, CALVO, Sebastiano, TOMASELLO A, FICI L, DI MAIDA G, LOVISON G, LUZZU F, ORESTANO C, PIRROTTA M, SCANNAVINO A, SCIANDRA M, and CALVO S
- Published
- 2007
31. Genetic isolation of Posidonia oceanica in a western Sicily coastal lagoon
- Author
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DI MAIDA, Germana, CALVO, Sebastiano, FICI, Luciano, LUZZU, Filippo, ORESTANO, Carla, PIRROTTA, Maria, SCANNAVINO, Antonino, TOMASELLO, Agostino, PROCACCINI G., DI MAIDA G, CALVO S, FICI L, LUZZU F, ORESTANO C, PIRROTTA M, SCANNAVINO A, TOMASELLO A, and PROCACCINI G
- Published
- 2007
32. Spatial and temporal distribution of Posidonia oceanica flowering in Sicilian and surrounding islands coasts
- Author
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PIRROTTA, Maria, DI MAIDA, Germana, FICI, Luciano, LUZZU, Filippo, ORESTANO, Carla, SCANNAVINO, Antonino, TOMASELLO, Agostino, CALVO, Sebastiano, PIRROTTA M, DI MAIDA G, FICI L, LUZZU F, ORESTANO C, SCANNAVINO A, TOMASELLO A, and CALVO S
- Published
- 2007
33. Spatial variability of bathymetric distribution of Posidonia oceanica (L.) Delile lower limits
- Author
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FICI, Luciano, DI MAIDA, Germana, LUZZU, Filippo, ORESTANO, Carla, PIRROTTA, Maria, SCANNAVINO, Antonino, TOMASELLO, Agostino, CALVO, Sebastiano, FICI L, DI MAIDA G, LUZZU F, ORESTANO C, PIRROTTA M, SCANNAVINO A, TOMASELLO A, and CALVO S
- Published
- 2007
34. Genetic variability of Posidonia oceanica (L.) Delile in Mediterranean transition zone
- Author
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SERRA I, ARNOUD HAOND S, DUARTE CM, INNOCENTI A, MIGLIACCIO M, SERRAO EA, PROCACCINI G., CALVO, Sebastiano, DI MAIDA, Germana, PIRROTTA, Maria, TOMASELLO, Agostino, SERRA I, ARNOUD-HAOND S, CALVO S, DI MAIDA G, DUARTE CM, INNOCENTI A, MIGLIACCIO M, PIRROTTA M, SERRAO EA, TOMASELLO A, and PROCACCINI G
- Published
- 2006
35. Fluorescence Detection of DNA/RNA G-Quadruplexes (G4s) by Twice-as-Smart Ligands.
- Author
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Ledvinka J, Rota Sperti F, Paragi G, Pirrotta M, Chéron N, Valverde IE, Menova P, and Monchaud D
- Abstract
Fluorescence detection of DNA and RNA G-quadruplexes (G4s) is a very efficient strategy to assess not only the existence and prevalence of cellular G4s but also their relevance as targets for therapeutic interventions. Among the fluorophores used to this end, turn-on probes are the most interesting since their fluorescence is triggered only upon interaction with their G4 targets, which ensures a high sensitivity and selectivity of detection. We reported on a series of twice-as-smart G4 probes, which are both smart G4 ligands (whose structure is reorganized upon interaction with G4s) and smart fluorescent probes (whose fluorescence is turned on upon interaction with G4s). The fine mechanistic details behind the excellent properties of the best prototype N-TASQ remain to be deciphered: to investigate this, we report here on the synthesis and studies of two analogues,
Tz N-TASQ andAlk N-TASQ, and on a careful analysis of their G4-interacting properties, investigated both in vitro and in silico. Our results show that fine-tuning their constitutive structural elements allows for increasing the efficiency of both their 'off' (i. e., a conformation with a low fluorescence) and 'on' states (i. e., a conformation with a high fluorescence), which opens interesting ways for the design of more efficient fluorogenic G4 probes., (© 2024 Wiley-VCH GmbH.)- Published
- 2024
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- View/download PDF
36. PhpC modulates G-quadruplex-RNA landscapes in human cells.
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Mitteaux J, Raevens S, Wang Z, Pirrotta M, Valverde IE, Hudson RHE, and Monchaud D
- Subjects
- Humans, DNA genetics, Ligands, RNA, G-Quadruplexes
- Abstract
Stabilizing DNA/RNA G-quadruplexes (G4s) using small molecules (ligands) has proven an efficient strategy to decipher G4 biology. Quite paradoxically, this search has also highlighted the need for finding molecules able to disrupt G4s to tackle G4-associated cellular dysfunctions. We report here on both qualitative and quantitative investigations that validate the G4-RNA-destabilizing properties of the leading compound PhpC in human cells.
- Published
- 2024
- Full Text
- View/download PDF
37. Synthesis of meso ,β-Fused Thiazinamine-Porphyrins via Oxidative C-N Fusion of Pyrimidinyl-Substituted Porphyrins.
- Author
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Bousfiha A, Amiri N, Akhssas F, Berthelot M, Echaubard J, Pirrotta M, Cattey H, Fleurat-Lessard P, Roger J, and Devillers CH
- Abstract
5,15-Bis(pyrimidin-2-ylthio)porphyrins have been synthesized. Their electrochemical oxidation leads to the formation of mono- and bis-C-N-fused thiopyrimidinium intermediates depending on the applied charge and potential. These latter undergo nucleophilic attack with water during workup that drives the ring opening of the pyrimidinium moiety. When piperidine is added before or after workup, the neutral fused porphyrinthiazin-2-amines are generated, and they exhibit a significant bathochromic shift of their Soret and Q bands.
- Published
- 2023
- Full Text
- View/download PDF
38. Click-Chemistry-Based Biomimetic Ligands Efficiently Capture G-Quadruplexes In Vitro and Help Localize Them at DNA Damage Sites in Human Cells.
- Author
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Rota Sperti F, Dupouy B, Mitteaux J, Pipier A, Pirrotta M, Chéron N, Valverde IE, and Monchaud D
- Abstract
Interrogating G-quadruplex (G4) biology at its deepest roots in human cells relies on the design, synthesis, and use of ever smarter molecular tools. Here, we demonstrate the versatility of biomimetic G4 ligands referred to as TASQ (template assembled synthetic G-quartet) in which a biotin handle was incorporated for G4-focused chemical biology investigations. We have rethought the biotinylated TASQ design to make it readily chemically accessible via an efficient click-chemistry-based strategy. The resulting biotinylated, triazole-assembled TASQ, or BioTriazoTASQ, was thus shown to efficiently isolate both DNA and RNA G4s from solution by affinity purification protocols, for identification purposes. Its versatility was then further demonstrated by optical imaging that provided unique mechanistic insights into the actual strategic relevance of G4-targeting strategies, showing that ligand-stabilized G4 sites colocalize with and, thus, are responsible for DNA damage foci in human cells., Competing Interests: The authors declare no competing financial interest., (© 2022 The Authors. Published by American Chemical Society.)
- Published
- 2022
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- View/download PDF
39. Cultivable Fungal Endophytes in Roots, Rhizomes and Leaves of Posidonia oceanica (L.) Delile along the Coast of Sicily, Italy.
- Author
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Torta L, Burruano S, Giambra S, Conigliaro G, Piazza G, Mirabile G, Pirrotta M, Calvo R, Bellissimo G, Calvo S, and Tomasello A
- Abstract
The presence of endophytic fungi in the roots, rhizomes, and leaves of Posidonia oceanica was evaluated in different localities of the Sicilian coast. Samples of roots, rhizomes, and leaves were submitted to isolation techniques, and the obtained fungal colonies were identified by morphological and molecular (rRNA sequencing) analysis. Fungal endophytes occurred mainly in roots and occasionally in rhizomes and leaves. Lulwoana sp. was the most frequent of the isolated taxa, suggesting a strong interaction with the host. In addition, eight other fungal taxa were isolated. In particular, fungi of the genus Ochroconis and family Xylariaceae were identified as endophytes in healthy plants at all sampling stations, whereas Penicillium glabrum was isolated at only one sampling station. Thus, several organs, especially roots of Posidonia oceanica , harbor endophytic fungi, potentially involved in supporting the living host as ascertained for terrestrial plants.
- Published
- 2022
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- View/download PDF
40. Letter to the editor regarding the article "Taking advantage of seagrass recovery potential to develop novel and effective meadow rehabilitation methods" by Alagna et al., published in Marine Pollution Bulletin, 149: 2019 (110578).
- Author
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Calvo S, Pirrotta M, and Tomasello A
- Subjects
- Ecosystem, Grassland, Mediterranean Sea, Alismatales, Environmental Restoration and Remediation
- Abstract
Alagna et al. (2019) suggest new transplantation methods for Posidonia oceanica (Linnaeus) Delile, inspired by its natural recovery process after disturbance due to dredging operations for gas-pipelines. They observe that P. oceanica vegetative fragments naturally settled only on loose calcareous stones deployed to fill the trenches of the gas-pipeline. No recovery was noted on dead matte, sand and large calcarenitic boulders. Following a new pilot restoration project currently ongoing in the same area, we demonstrate that natural recovery also occurs on dead matte. After examining other alternative transplantation methods for P. oceanica, the Authors suggest using their "habitat enhancement units" method for the restoration of seagrasses, not only on rocky bottom but also on sand and other bare substrate requiring general environmental restoration. Here we express disagreement on certain issues reported in the paper., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2020
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- View/download PDF
41. Resilience of the seagrass Posidonia oceanica following pulse-type disturbance.
- Author
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Noè S, Bellavia C, Calvo S, Mazzola A, Pirrotta M, Sciandra M, Vizzini S, and Tomasello A
- Subjects
- Italy, Mediterranean Sea, Retrospective Studies, Alismatales growth & development, Ecosystem
- Abstract
Understanding the response of species to disturbance and the ability to recover is crucial for preventing their potential collapse and ecosystem phase shifts. Explosive submarine activity, occurring in shallow volcanic vents, can be considered as a natural pulse disturbance, due to its suddenness and high intensity, potentially affecting nearby species and ecosystems. Here, we present the response of Posidonia oceanica, a long-lived seagrass, to an exceptional submarine volcanic explosion, which occurred in the Aeolian Archipelago (Italy, Mediterranean Sea) in 2002, and evaluate its resilience in terms of time required to recover after such a pulse event. The study was carried out in 2011 in the sea area off Panarea Island, in the vicinity of Bottaro Island by adopting a back-dating methodological approach, which allowed a retrospective analysis of the growth performance and stable carbon isotopes (δ
13 C) in sheaths and rhizomes of P. oceanica, during a 10-year period (2001-2010). After the 2002 explosion, a trajectory shift towards decreasing values for both growth performance and δ13 C in sheaths and rhizomes was observed. The decreasing trend reversed in 2004 when recovery took place progressively for all the analysed variables. Full recovery of P. oceanica occurred 8 years after the explosive event with complete restoration of all the variables (rhizome growth performance and δ13 C) by 2010. Given the ecological importance of this seagrass in marine coastal ecosystems and its documented large-scale decline, the understanding of its potential recovery in response to environmental changes is imperative., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier Ltd. All rights reserved.)- Published
- 2020
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- View/download PDF
42. Small-molecule affinity capture of DNA/RNA quadruplexes and their identification in vitro and in vivo through the G4RP protocol.
- Author
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Renard I, Grandmougin M, Roux A, Yang SY, Lejault P, Pirrotta M, Wong JMY, and Monchaud D
- Subjects
- Biotinylation, Humans, Ligands, MCF-7 Cells, Reverse Transcriptase Polymerase Chain Reaction, DNA chemistry, G-Quadruplexes, Genome, Human genetics, RNA chemistry, Transcriptome genetics
- Abstract
Guanine-rich DNA and RNA sequences can fold into higher-order structures known as G-quadruplexes (or G4-DNA and G4-RNA, respectively). The prevalence of the G4 landscapes in the human genome, transcriptome and ncRNAome (non-coding RNA), collectively known as G4ome, is strongly suggestive of biological relevance at multiple levels (gene expression, replication). Small-molecules can be used to track G4s in living cells for the functional characterization of G4s in both normal and disease-associated changes in cell biology. Here, we describe biotinylated biomimetic ligands referred to as BioTASQ and their use as molecular tools that allow for isolating G4s through affinity pull-down protocols. We demonstrate the general applicability of the method by purifying biologically relevant G4s from nucleic acid mixtures in vitro and from human cells through the G4RP-RT-qPCR protocol. Overall, the results presented here represent a step towards the optimization of G4-RNAs identification, a key step in studying G4s in cell biology and human diseases., (© The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2019
- Full Text
- View/download PDF
43. TWJ-Screen: an isothermal screening assay to assess ligand/DNA junction interactions in vitro.
- Author
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Guyon L, Pirrotta M, Duskova K, Granzhan A, Teulade-Fichou MP, and Monchaud D
- Subjects
- Base Sequence, DNA Damage, Fluorescent Dyes chemistry, Genetic Loci, Genome, Human, Genomic Instability, Humans, Intercalating Agents chemistry, Ligands, Rhodamines chemistry, Small Molecule Libraries chemistry, Structure-Activity Relationship, DNA Replication drug effects, DNA, Cruciform drug effects, G-Quadruplexes drug effects, High-Throughput Screening Assays, Intercalating Agents pharmacology, Small Molecule Libraries pharmacology
- Abstract
The quest for chemicals able to operate at selected genomic loci in a spatiotemporally controlled manner is desirable to create manageable DNA damages. Mounting evidence now shows that alternative DNA structures, including G-quadruplexes and branched DNA (or DNA junctions), might hamper proper progression of replication fork, thus triggering DNA damages and genomic instability. Therefore, small molecules that stabilize these DNA structures are currently scrutinized as a promising way to create genomic defects that cannot be dealt with properly by cancer cells. While much emphasis has been recently given to G-quadruplexes and related ligands, we report herein on three-way DNA junctions (TWJ) and related ligands. We first highlight the biological implications of TWJ and their strategic relevance as triggers for replicative stress. Then, we describe a new in vitro high-throughput screening assay, TWJ-Screen, which allows for identifying TWJ ligands with both high affinity and selectivity for TWJ over other DNA structures (duplexes and quadruplexes), in a convenient and unbiased manner as demonstrated by the screening of a library of 25 compounds from different chemical families. TWJ-Screen thus represents a reliable mean to uncover molecular tools able to foster replicative stress through an innovative approach, thus providing new strategic opportunities to combat cancers.
- Published
- 2018
- Full Text
- View/download PDF
44. Prefolded Synthetic G-Quartets Display Enhanced Bioinspired Properties.
- Author
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Flack T, Constantin T, Penasse S, Dejeu J, Gennaro B, Jourdan M, Laguerre A, Pirrotta M, Monchaud D, Spinelli N, and Defrancq E
- Subjects
- Biocatalysis, DNA, Catalytic metabolism, G-Quadruplexes, Models, Molecular, Nucleic Acid Conformation, DNA, Catalytic chemistry, Solutions chemistry, Water chemistry
- Abstract
A water-soluble template-assembled synthetic G-quartet (TASQ) based on the use of a macrocyclodecapeptide scaffold was designed to display stable intramolecular folds alone in solution. The preformation of the guanine quartet, demonstrated by NMR and CD investigations, results in enhanced peroxidase-type biocatalytic activities and improved quadruplex-interacting properties. Comparison of its DNAzyme-boosting properties with the ones of previously published TASQ revealed that, nowadays, it is the best DNAzyme-boosting agent., (© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2016
- Full Text
- View/download PDF
45. Visualization of RNA-Quadruplexes in Live Cells.
- Author
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Laguerre A, Hukezalie K, Winckler P, Katranji F, Chanteloup G, Pirrotta M, Perrier-Cornet JM, Wong JM, and Monchaud D
- Subjects
- Animals, Biomimetics, Cations, Cell Line, Tumor, Chelating Agents chemistry, Fluorescence Resonance Energy Transfer, Humans, Ligands, MCF-7 Cells, Melanoma, Experimental, Mice, Photons, RNA chemistry, Static Electricity, DNA genetics, Fluorescent Dyes chemistry, G-Quadruplexes, Microscopy, Fluorescence methods, RNA genetics
- Abstract
Visualization of DNA and RNA quadruplex formation in human cells was demonstrated recently with different quadruplex-specific antibodies. Despite the significant interest in these immunodetection approaches, dynamic detection of quadruplex in live cells remains elusive. Here, we report on NaphthoTASQ (N-TASQ), a next-generation quadruplex ligand that acts as a multiphoton turn-on fluorescent probe. Single-step incubation of human and mouse cells with N-TASQ enables the direct detection of RNA-quadruplexes in untreated cells (no fixation, permeabilization or mounting steps), thus offering a unique, unbiased visualization of quadruplexes in live cells.
- Published
- 2015
- Full Text
- View/download PDF
46. Surface-promoted aggregation of amphiphilic quadruplex ligands drives their selectivity for alternative DNA structures.
- Author
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Laguerre A, Chang Y, Pirrotta M, Desbois N, Gros CP, Lesniewska E, and Monchaud D
- Subjects
- G-Quadruplexes, Ligands, Microscopy, Atomic Force, Models, Molecular, Nanostructures chemistry, Nanostructures ultrastructure, Nucleic Acid Conformation, DNA chemistry, Porphyrins chemistry, Surface-Active Agents chemistry
- Abstract
Scientists are currently truly committed to enhance the specificity of chemotherapeutics that target DNA. To this end, sequence-specific drugs have progressively given way to structure-specific therapeutics. However, while numerous strategies have been implemented to design high-affinity candidates, strategies devoted to the design of high-selectivity ligands are still rare. Here we report on such an approach via the study of an amphiphilic compound, TEGPy, that self-assembles at a liquid/solid interface to provide nanosized objects that are stable in water. The resulting aggregates, identified through atomic force microscopy measurements, were found to disassemble upon interaction with DNA in a structure-specific manner (quadruplex- versus duplex-DNA). Our results provide a fertile ground for devising new strategies aiming at concomitantly enhancing DNA structural specificity and the water-solubility of aggregation-prone ligands.
- Published
- 2015
- Full Text
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47. Cationic azacryptands as selective three-way DNA junction binding agents.
- Author
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Novotna J, Laguerre A, Granzhan A, Pirrotta M, Teulade-Fichou MP, and Monchaud D
- Subjects
- Animals, Azabicyclo Compounds pharmacology, Cell Proliferation drug effects, DNA chemistry, Melanoma, Experimental pathology, Mice, Models, Molecular, Nucleic Acid Conformation, Azabicyclo Compounds chemistry, Azabicyclo Compounds metabolism, DNA metabolism
- Abstract
DNA damaging agents are among the most powerful anticancer drugs currently in clinical use. As an alternative to irreversible nucleobase damage and DNA strand breaks, the non-covalent stabilization of unusual, non-B DNA structures is currently emerging as a promising way to cause DNA damage with a high level of specificity. One of such non-B DNA structures is the three-way DNA junction: this Y-shaped multi-stranded architecture may act as an impediment to many DNA transactions, being therefore regarded as an invaluable target to create genomic defects that are improperly dealt with by cancer cells only. Herein, we report on a series of cationic azacryptands that make excellent candidates for assessing and harnessing the actual therapeutic potential of three-way DNA junction interacting compounds.
- Published
- 2015
- Full Text
- View/download PDF
48. Synthetic G-Quartets as Versatile Nanotools for the Luminescent Detection of G-Quadruplexes.
- Author
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Laguerre A, Levillain M, Stefan L, Haudecoeur R, Katranji F, Pirrotta M, and Monchaud D
- Subjects
- Drug Design, Graphite chemistry, Models, Molecular, Organometallic Compounds chemical synthesis, Organometallic Compounds chemistry, Terbium chemistry, G-Quadruplexes, Guanine chemistry, Luminescent Agents chemical synthesis, Luminescent Agents chemistry, Luminescent Measurements, Nanotechnology methods
- Abstract
Recent years have witnessed a tremendous increase in the biotechnological applications of nucleic acid-based nanotools. Beyond their biological relevance, nucleobases have indeed found new scopes of applications in bionanotechnology, which are expanding nowadays at an accelerated pace. Among the four canonical nucleobases (adenine, guanine, cytosine and thymine), guanine is certainly the most useful and used base, thanks to its versatile H-bond donating/accepting properties that make it suitable for being involved in various assemblies ranging from base-pairs to base-quartets. Here, we would like to report on an innovative guanine-based molecular tool named Tb. Pyro-DOTASQ: this metal complex has a sophisticated chemical structure that allows formation of an intramolecular G-quartet upon interaction with alternative secondary structures known as G-quadruplexes. This target-promoted molecular switch triggers a luminescence response that would permit the use of Tb. Pyro-DOTASQ to search and detect quadruplex-forming DNA and RNA sequences: its unique design indeed allows it i) to create specific interaction with quadruplexes, ii) to provide an easily readable luminescent output to monitor this association and iii) to be readily immobilized on graphene surface, thus making Tb. Pyro-DOTASQ a high-value molecular device. Results obtained in the course of in-depth biophysical analyses raise questions about the actual supramolecular structure of Tb. Pyro-DOTASQ: these results thus shed a bright light on the care that must be exercised when using intricate molecular architectures to construct elaborated supramolecular metal complexes.
- Published
- 2015
- Full Text
- View/download PDF
49. A twice-as-smart synthetic G-quartet: PyroTASQ is both a smart quadruplex ligand and a smart fluorescent probe.
- Author
-
Laguerre A, Stefan L, Larrouy M, Genest D, Novotna J, Pirrotta M, and Monchaud D
- Subjects
- Base Sequence, DNA chemistry, Fluorescence Resonance Energy Transfer, Ligands, Models, Molecular, RNA chemistry, Fluorescent Dyes chemistry, G-Quadruplexes
- Abstract
Recent and unambiguous evidences of the formation of DNA and RNA G-quadruplexes in cells has provided solid support for these structures to be considered as valuable targets in oncology. Beyond this, they have lent further credence to the anticancer strategies relying on small molecules that selectively target these higher-order DNA/RNA architectures, referred to as G-quadruplex ligands. They have also shed bright light on the necessity of designing multitasking ligands, displaying not only enticing quadruplex interacting properties (affinity, structural selectivity) but also additional features that make them usable for detecting quadruplexes in living cells, notably for determining whether, when, and where these structures fold and unfold during the cell cycle and also for better assessing the consequences of their stabilization by external agents. Herein, we report a brand new design of such multitasking ligands, whose structure experiences a quadruplex-promoted conformational switch that triggers not only its quadruplex affinity (i.e., smart ligands, which display high affinity and selectivity for DNA/RNA quadruplexes) but also its fluorescence (i.e., smart probes, which behave as selective light-up fluorescent reporters on the basis of a fluorogenic electron redistribution). The first prototype of such multifunctional ligands, termed PyroTASQ, represents a brand new generation of quadruplex ligands that can be referred to as "twice-as-smart" quadruplex ligands.
- Published
- 2014
- Full Text
- View/download PDF
50. Caffeine-based gold(I) N-heterocyclic carbenes as possible anticancer agents: synthesis and biological properties.
- Author
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Bertrand B, Stefan L, Pirrotta M, Monchaud D, Bodio E, Richard P, Le Gendre P, Warmerdam E, de Jager MH, Groothuis GM, Picquet M, and Casini A
- Subjects
- Animals, Antineoplastic Agents chemical synthesis, Cell Line, Cell Line, Tumor, Cell Proliferation drug effects, Heterocyclic Compounds chemical synthesis, Heterocyclic Compounds chemistry, Heterocyclic Compounds pharmacology, Humans, Inhibitory Concentration 50, Ligands, Methane chemistry, Molecular Structure, Xanthine chemistry, Antineoplastic Agents chemistry, Antineoplastic Agents pharmacology, Caffeine chemistry, Gold chemistry, Methane analogs & derivatives
- Abstract
A new series of gold(I) N-heterocyclic carbene (NHC) complexes based on xanthine ligands have been synthesized and characterized by mass spectrometry, NMR, and X-ray diffraction. The compounds have been tested for their antiproliferative properties in human cancer cells and nontumorigenic cells in vitro, as well as for their toxicity in healthy tissues ex vivo. The bis-carbene complex [Au(caffein-2-ylidene)2][BF4] (complex 4) appeared to be selective for human ovarian cancer cell lines and poorly toxic in healthy organs. To gain preliminary insights into their actual mechanism of action, two biologically relevant in cellulo targets were studied, namely, DNA (more precisely a higher-order DNA structure termed G-quadruplex DNA that plays key roles in oncogenetic regulation) and a pivotal enzyme of the DNA damage response (DDR) machinery (poly-(adenosine diphosphate (ADP)-ribose) polymerase 1 (PARP-1), strongly involved in the cancer resistance mechanism). Our results indicate that complex 4 acts as an efficient and selective G-quadruplex ligand while being a modest PARP-1 inhibitor (i.e., poor DDR impairing agent) and thus provide preliminary insights into the molecular mechanism that underlies its antiproliferative behavior.
- Published
- 2014
- Full Text
- View/download PDF
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