47 results on '"Nguyen, Trong Hieu"'
Search Results
2. Tissue of origin detection for cancer tumor using low-depth cfDNA samples through combination of tumor-specific methylation atlas and genome-wide methylation density in graph convolutional neural networks.
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Doan, Nhu Nhat Tan, Nguyen, Trong Hieu, Tran, Trung Hieu, Nguyen, Thi Hue Hanh, Nguyen, Van Thien Chi, Giang, Hoa, Tran, Le Son, and Phan, Minh Duy
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- 2024
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3. A novel cell-free multi-omics approach for enhancing multi-cancer early detection.
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Nguyen, Thien-Chi Van Van, Nguyen, Anh-Nhu, Nguyen, Thien-Phuc Hoang, Nguyen, Hanh Thi-Hue, Tran, Trung-Hieu, Nguyen, Tien-Anh, Tran, Trang Thi, Nguyen, Trong Hieu, Giang, Hoa, Phan, Minh-Duy, Nguyen, Hoai-Nghia, and Tran, Le Son
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- 2024
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4. Comprehensive validation of a cell-free DNA-based assay for multi-cancer detection: A Vietnamese longitudinal prospective cohort study of 9,024 participants.
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Tran, Le Son, Nguyen, Thi Hue Hanh, Nguyen, Luu Hong Dang, Nguyen, Trong Hieu, Nguyen, Thanh Dat, Giang, Hoa, Phan, Minh Duy, Nguyen, Duy Sinh, Tang, Hung Sang, and Nguyen, Hoai-Nghia
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- 2024
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5. Multimodal analysis of methylation and fragmentomic profiles in plasma cell free DNA for differentiation of benign and malignant breast tumors.
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Van, Thi Tuong Vi, Nguyen, Hanh Thi-Hue, Nguyen, Thien-Chi Van Van, Vo, Dac Ho, Tran, Trung Hieu, Nguyen, Trong Hieu, Doan, Nhu Nhat Tan, Huynh, Le Anh Khoa, Nguyen, Xuan Vinh, Giang, Hoa, Phan, Minh-Duy, Nguyen, Hoai Nghia, and Tran, Le Son
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- 2024
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6. Fragment length profiles of cancer mutations enhance detection of circulating tumor DNA in patients with early-stage hepatocellular carcinoma
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Nguyen, Van-Chu, Nguyen, Trong Hieu, Phan, Thanh Hai, Tran, Thanh-Huong Thi, Pham, Thu Thuy Thi, Ho, Tan Dat, Nguyen, Hue Hanh Thi, Duong, Minh-Long, Nguyen, Cao Minh, Nguyen, Que-Tran Bui, Bach, Hoai-Phuong Thi, Kim, Van-Vu, Pham, The-Anh, Nguyen, Bao Toan, Nguyen, Thanh Nhan Vo, Huynh, Le Anh Khoa, Tran, Vu Uyen, Tran, Thuy Thi Thu, Nguyen, Thanh Dang, Phu, Dung Thai Bieu, Phan, Boi Hoan Huu, Nguyen, Quynh-Tho Thi, Truong, Dinh-Kiet, Do, Thanh-Thuy Thi, Nguyen, Hoai-Nghia, Phan, Minh-Duy, Giang, Hoa, and Tran, Le Son
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- 2023
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7. Spatial metapopulation dynamics with local and global colonization
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Le, Dieu Huong, Nguyen, Trong Hieu, and Takasu, Fugo
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- 2023
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8. Competition or cooperation in transboundary fish stocks management: Insight from a dynamical model
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Nguyen, Trong Hieu, Brochier, Timothée, Auger, Pierre, Trinh, Viet Duoc, and Brehmer, Patrice
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- 2018
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9. The epidemiology and aetiology of diarrhoeal disease in infancy in southern Vietnam: a birth cohort study
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Katherine L. Anders, Corinne N. Thompson, Nguyen Thi Van Thuy, Nguyen Minh Nguyet, Le Thi Phuong Tu, Tran Thi Ngoc Dung, Voong Vinh Phat, Nguyen Thi Hong Van, Nguyen Trong Hieu, Nguyen Thi Hong Tham, Phan Thi Thanh Ha, Le Bich Lien, Nguyen Van Vinh Chau, Stephen Baker, and Cameron P. Simmons
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Diarrhoeal disease ,Infectious diarrhoea ,Infants ,Epidemiology ,Cohort study ,Rotavirus ,Infectious and parasitic diseases ,RC109-216 - Abstract
Objectives: Previous studies indicate a high burden of diarrhoeal disease in Vietnamese children, however longitudinal community-based data on burden and aetiology are limited. The findings from a large, prospective cohort study of diarrhoeal disease in infants in southern Vietnam are presented herein. Methods: Infants were enrolled at birth in urban Ho Chi Minh City and a semi-rural district in southern Vietnam, and followed for 12 months (n = 6706). Diarrhoeal illness episodes were identified through clinic-based passive surveillance, hospital admissions, and self-reports. Results: The minimum incidence of diarrhoeal illness in the first year of life was 271/1000 infant-years of observation for the whole cohort. Rotavirus was the most commonly detected pathogen (50% of positive samples), followed by norovirus (24%), Campylobacter (20%), Salmonella (18%), and Shigella (16%). Repeat infections were identified in 9% of infants infected with rotavirus, norovirus, Shigella, or Campylobacter, and 13% of those with Salmonella infections. Conclusions: The minimum incidence of diarrhoeal disease in infants in both urban and semi-rural settings in southern Vietnam was quantified prospectively. A large proportion of laboratory-diagnosed disease was caused by rotavirus and norovirus. These data highlight the unmet need for a rotavirus vaccine in Vietnam and provide evidence of the previously unrecognized burden of norovirus in infants.
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- 2015
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10. Clinical validation of a ctDNA-Based Assay for Multi-Cancer Detection: An Interim Report from a Vietnamese Longitudinal Prospective Cohort Study of 2795 Participants.
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Nguyen, Thi Hue Hanh, Lu, Y-Thanh, Le, Van Hoi, Bui, Vinh Quang, Nguyen, Lan Hieu, Pham, Nhu Hiep, Phan, Thanh Hai, Nguyen, Huu Thinh, Tran, Van Song, Bui, Chi Viet, Vo, Van Kha, Nguyen, Pham Thanh Nhan, Dang, Ha Huu Phuoc, Pham, Van Dung, Cao, Van Thinh, Nguyen, Thanh Dat, Nguyen, Luu Hong Dang, Phan, Ngoc Minh, Nguyen, Trong Hieu, and Nguyen, Van Thien Chi
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DNA analysis ,TUMOR diagnosis ,RESEARCH ,BIOPSY ,EARLY detection of cancer ,RESEARCH funding ,DESCRIPTIVE statistics ,LONGITUDINAL method ,EARLY medical intervention - Abstract
The SPOT-MAS assay "Screening for the Presence Of Tumor by Methylation And Size" detects the five most common cancers in Vietnam by evaluating circulating tumor DNA in the blood. Here, we validated its performance in a prospective multi-center clinical trial, K-DETEK. Our analysis of 2795 participants from 14 sites across Vietnam demonstrates its ability to detect cancers in asymptomatic individuals with a positive predictive value of 60%, with 83.3% accuracy in detecting tumor location. We present a case report to support further using SPOT-MAS as a complementary method to achieve early cancer detection and provide the opportunity for early treatment. [ABSTRACT FROM AUTHOR]
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- 2023
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11. Circulating DNA methylation profile improves the accuracy of serum biomarkers for the detection of nonmetastatic hepatocellular carcinoma.
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Phan, Thanh Hai, Chi Nguyen, Van Thien, Thi Pham, Thu Thuy, Nguyen, Van-Chu, Ho, Tan Dat, Quynh Pham, Thi Mong, Tran, Thanh-Huong, Nguyen, Thanh Dat, Khang Le, Nguyen Duy, Nguyen, Trong-Hieu, Duong, Minh-Long, Bach, Hoai-Phuong Thi, Kim, Van-Vu, Pham, The-Anh, Nguyen, Bao Toan, Vo Nguyen, Thanh Nhan, Nguyen, Thanh Dang, Bieu Phu, Dung Thai, Huu Phan, Boi Hoan, and Nguyen, Duy-Sinh
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Aim: This study exploited hepatocellular carcinoma (HCC)-specific circulating DNA methylation profiles to improve the accuracy of a current screening assay for HCC patients in high-risk populations. Methods: Differentially methylated regions in cell-free DNA between 58 nonmetastatic HCC and 121 high-risk patients with liver cirrhosis or chronic hepatitis were identified and used to train machine learning classifiers. Results: The model could distinguish HCC from high-risk non-HCC patients in a validation cohort, with an area under the curve of 0.84. Combining these markers with the three serum biomarkers (AFP, lectin-reactive AFP, des-γ-carboxy prothrombin) in a commercial test, μTASWako
® , achieved an area under the curve of 0.87 and sensitivity of 68.8% at 95.8% specificity. Conclusion: HCC-specific circulating DNA methylation markers may be added to the available assay to improve the early detection of HCC. The early detection of liver cancer in high-risk populations can help people with the disease have a higher chance of survival and better quality of life. However, this is still a healthcare challenge. Current commercial blood tests measuring protein signatures in the blood have low accuracy due to increased levels of these proteins being detected in both liver cancer patients and patients with chronic liver diseases. In this study, we identified a set of signatures in DNA released by cancer cells into the bloodstream and used them as biomarkers to distinguish liver cancer patients from high-risk patients. We also demonstrated that adding those signatures to a commercial blood test currently used in clinics could improve the accuracy in detecting liver cancer patients. Cancer-specific methylation markers combined with the three serum biomarkers (AFP, AFP-L3 and DCP) in a commercial diagnostic test, μTASWako, improve accuracy of liver cancer screening in high-risk populations. [ABSTRACT FROM AUTHOR]- Published
- 2022
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12. Multimodal analysis of ctDNA methylation and fragmentomic profiles enhances detection of nonmetastatic colorectal cancer.
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Nguyen, Huu Thinh, Khoa Huynh, Le Anh, Nguyen, Trieu Vu, Tran, Duc Huy, Thu Tran, Thuy Thi, Khang Le, Nguyen Duy, Le, Ngoc-An Trinh, Pham, Truong-Vinh Ngoc, Le, Minh-Triet, Quynh Pham, Thi Mong, Nguyen, Trong Hieu, Van Nguyen, Thien Chi, Nguyen, Thanh Dat, Tran Nguyen, Bui Que, Phan, Minh-Duy, Giang, Hoa, and Tran, Le Son
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Aims: Early detection of colorectal cancer (CRC) provides substantially better survival rates. This study aimed to develop a blood-based screening assay named SPOT-MAS ('screen for the presence of tumor by DNA methylation and size') for early CRC detection with high accuracy. Methods: Plasma cell-free DNA samples from 159 patients with nonmetastatic CRC and 158 healthy controls were simultaneously analyzed for fragment length and methylation profiles. We then employed a deep neural network with fragment length and methylation signatures to build a classification model. Results: The model achieved an area under the curve of 0.989 and a sensitivity of 96.8% at 97% specificity in detecting CRC. External validation of our model showed comparable performance, with an area under the curve of 0.96. Conclusion: SPOT-MAS based on integration of cancer-specific methylation and fragmentomic signatures could provide high accuracy for early-stage CRC detection. A novel blood test for early detection of colorectal cancer. Colorectal cancer is a cancer of the colon or rectum, located at the lower end of the digestive tract. The early detection of colorectal cancer can help people with the disease have a higher chance of survival and a better quality of life. Current screening methods can be invasive, cause discomfort or have low accuracy; therefore newer screening methods are needed. In this study we developed a new screening method, called SPOT-MAS, which works by measuring the signals of cancer DNA in the blood. By combining different characteristics of cancer DNA, SPOT-MAS could distinguish blood samples of people with colorectal cancer from those of healthy individuals with high accuracy. SPOT-MAS technology combines methylation and fragmentomic signatures of blood-based circulating tumor DNA in a multimodal deep-learning analysis to enable early detection of colorectal cancer with high accuracy. [ABSTRACT FROM AUTHOR]
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- 2022
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13. Convergence of a variational time discretization for the 1-dimensional isentropic Euler equations
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Nguyen, Trong-Hieu, Westdickenberg, Michael, and Müller, Siegfried
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compensated compactness ,1-dimensional isentropic Euler equations ,convergence analysis ,numerical method ,ddc:510 - Abstract
Dissertation, RWTH Aachen University, 2021; Aachen : RWTH Aachen University 1 Online-Ressource : Illustrationen (2021). = Dissertation, RWTH Aachen University, 2021, This dissertation is devoted to the proof of convergence of a variational time discretization proposed in [1]. Starting from the variational time discretization, we apply the well-known compensated compactness framework to prove strong convergence of constructed solutions to the p-system instead of the isentropic Euler equations. The reason behind this alteration is that the variational time discretization has a Lagrangian nature: Fluid states are constructed based on a transport map, which is obtained by solving a minimization problem at each time step. These transport maps update the position of all fluid particles after each iteration, thus illustrate their trajectories. Once we obtain the strong convergence for the p-system, the interchangeability between the two systems following from continuity arguments will lead to the desired strong convergence of the scheme for isentropic Euler equations., Published by RWTH Aachen University, Aachen
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- 2021
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14. Influences of Loading Density of Tobacco Drying Chamber on Drying Quality.
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Ta Van Chuong, Do Duc Nam, Phan Thi Thu Huong, Nguyen Quoc Uy, Ngo Minh Duc, Nguyen Trong Hieu, Nguyen Cong Duc, and Tran Dai Nghia
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- 2022
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15. Ultra-Deep Sequencing of Plasma-Circulating DNA for the Detection of Tumor- Derived Mutations in Patients with Nonmetastatic Colorectal Cancer.
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Nguyen, Huu-Thinh, Luong, Bac An, Tran, Duc-Huy, Nguyen, Trong-Hieu, Ngo, Quoc Dat, Le, Linh Gia Hoang, Ho, Quoc Chuong, Nguyen, Hue-Hanh Thi, Nguyen, Cao Minh, Tran, Vu Uyen, Pham, Truong Vinh Ngoc, Le, Minh Triet, Le, Ngoc An Trinh, Le, Trung Kien, Nguyen, Thanh Luan, Pham, Hong-Anh Thi, Le, Hong Thuy, Duong, Hong Diep Thi, Hoang, Anh Vu, and Nguyen, Hoang Bac
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GENETIC mutation ,SEQUENCE analysis ,ALLELES ,METASTASIS ,EARLY detection of cancer ,COLORECTAL cancer ,BODY fluid examination ,EXTRACELLULAR space ,NUCLEIC acids - Abstract
Identification of tumor-derived mutation (TDM) in liquid biopsies (LB), especially in early-stage patients, faces several challenges, including low variant-allele frequencies, interference by white blood cell (WBC)-derived mutations (WDM), benign somatic mutations and tumor heterogeneity. Here, we addressed the above-mentioned challenges in a cohort of 50 nonmetastatic colorectal cancer patients, via a workflow involving parallel sequencing of paired WBC- and tumor-gDNA. After excluding potential false positive mutations, we detected at least one TDM in LB of 56% (28/50) of patients, with the majority showing low-patient coverage, except for one TDM mapped to KMT2D that recurred in 30% (15/30) of patients. [ABSTRACT FROM AUTHOR]
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- 2022
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16. A polymorphism in toll-interleukin 1 receptor domain containing adaptor protein is associated with susceptibility to meningeal tuberculosis
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Tran Tinh Hien, Marta Janer, Nguyen Thuy Thuong Thuong, Alan Aderem, Stephanie Rodrigues, Tran Thi Hong Chau, Jeremy Farrar, Nguyen Trong Hieu, Hoang Thi Quy, Nguyen Thi Ngoc Lan, Thomas R. Hawn, Lue Ping Zhao, Sarah J. Dunstan, Cameron P. Simmons, and Guy E. Thwaites
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TIRAP ,Male ,Candidate gene ,Tuberculosis ,Black People ,Biology ,Article ,Mycobacterium tuberculosis ,Consanguinity ,Hepatitis B, Chronic ,Abdomen ,Genetic predisposition ,medicine ,Diseases in Twins ,Immunology and Allergy ,Humans ,Genetic Predisposition to Disease ,Tuberculosis, Pulmonary ,Toll-like receptor ,Innate immune system ,Polymorphism, Genetic ,Toll-Like Receptors ,Genetic Variation ,Receptors, Interleukin-1 ,Receptors, Interleukin ,Acquired immune system ,medicine.disease ,biology.organism_classification ,Infectious Diseases ,Tuberculosis, Meningeal ,Immunology ,Mutation ,Receptors, Calcitriol ,Female ,Metabolism, Inborn Errors - Abstract
Despite the discovery of the tuberculosis bacillus >100 years ago and the availability of effective drugs for >50 years, there remain a number of formidable challenges for controlling Mycobacterium tuberculosis (Mtb) infection [1]. The development of a more-effective vaccine is a high worldwide priority and depends on a thorough understanding of the host response to infection. Furthermore, tuberculosis (TB) causes different types of human disease, including localized pulmonary disease, extrapulmonary disease—such as meningitis—and miliary or disseminated disease. It is not known at present which host genetic, environmental, and bacterial virulence factors influence the different clinical presentations of TB. Tuberculous meningitis (TBM) is an especially devastating form of TB that causes death or severe neurological defici in more than one-half of persons affected [2]. Advances in genomic technology and immunology are creating new opportunities to understand the influence of human genetic variation on the pathophysiological characteristics of TB. The molecular mechanisms that influence the development of a protective immune response to Mtb are only beginning to be elucidated. A series of studies with different methodologies over the course of the past 50 years have indicated that host genetics strongly influence susceptibility to tuberculosis [3-11]. Major susceptibility loci from whole-genome methods have not yet been conclusively identified which suggests that the genetic control of susceptibility to TB is polygenic. Candidate gene-association studies of critical host response genes have successfully identified some of the genes involved in susceptibility to TB. Using candidate gene approaches, we and others have recently discovered mutations and polymorphisms in Toll-like receptor (TLR)–pathway genes that affect host susceptibility to infection [12-15]. The discovery of TLRs precipitated a major advance in understanding the molecular mechanisms of both pathogen recognition and inflammation by the innate immune system [16-18]. Human TLRs are a family of 10 proteins that differentially recognize pathogen-associated molecular patterns (PAMPs) and initiate signaling pathways that lead to the activation of the innate immune response, cytokine production, and formation of the adaptive immune response. Mycobacteria are initially recognized by TLR1, −2, −4, and −6, which, in turn, interact with the adaptor proteins MyD88 and Toll-interleukin 1 receptor (TIR) domain containing adaptor protein (TIRAP; also known as Mal) to activate macrophages and dendritic cells [19-25]. TIRAP mediates signals from these TLRs through its TIR domain, which forms a homotypic interaction with the TIR domain of the TLR [26-29]. It is not presently known whether polymorphisms in TIRAP influence susceptibility to any infection. Because of the central role that adaptor proteins play in mediating signals from TLRs that recognize Mtb, we hypothesized that polymorphisms in TIRAP are associated with susceptibility to TB. In the present article, we report the association of a TIRAP single-nucleotide polymorphism (SNP) with susceptibility to TBM and demonstrate that this polymorphism is associated with a decreased whole-blood cytokine response. To our knowledge, this is the firs reported association of a TIRAP SNP with any infection, which suggests that variants of TIRAP influence important differences in host susceptibility to TB.
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- 2019
17. The Role of Maternally Acquired Antibody in Providing Protective Immunity Against Nontyphoidal Salmonella in Urban Vietnamese Infants: A Birth Cohort Study
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Tran Do Hoang Nhu, Ha Thanh Tuyen, Nguyen Trong Hieu, Tran Thi Hong Chau, Cameron P. Simmons, Guy E. Thwaites, Trinh Van Tan, Lu Lan Vi, Ruklanthi de Alwis, Nguyen Van Vinh Chau, Vu Thuy Duong, Le Thi Phuong Tu, Stephen Baker, Tran Vu Thieu Nga, Nguyen Thi Van Thuy, Corinne N. Thompson, Trang Nguyen Hoang Thu, Nhi Le Thi Quynh, Pham Van Minh, Katherine L. Anders, Baker, Stephen [0000-0003-1308-5755], and Apollo - University of Cambridge Repository
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0301 basic medicine ,Serotype ,Lipopolysaccharides ,Male ,Salmonella typhimurium ,Salmonella ,medicine.disease_cause ,Cohort Studies ,0302 clinical medicine ,Risk Factors ,Seroepidemiologic Studies ,Immunology and Allergy ,Medicine ,030212 general & internal medicine ,biology ,O Antigens ,infant antibodies ,respiratory system ,Antibodies, Bacterial ,3. Good health ,Infectious Diseases ,transplacentally acquired immunity ,Vietnam ,Salmonella enterica ,Salmonella Infections ,Female ,maternal immunization ,Antibody ,seroepidemiology ,circulatory and respiratory physiology ,NTS ,Adult ,Salmonella enteritidis ,Serogroup ,03 medical and health sciences ,Major Articles and Brief Reports ,Immunity ,Nontyphoidal Salmonella ,Humans ,Seroconversion ,Bacteria ,business.industry ,Infant, Newborn ,Infant ,biology.organism_classification ,030104 developmental biology ,maternal antibodies ,Immunization ,nervous system ,seroincidence ,Immunology ,Multivariate Analysis ,biology.protein ,business ,Immunity, Maternally-Acquired - Abstract
We found a high transfer ratio of anti-nontyphoidal Salmonella (NTS) antibodies from mothers to infants. Furthermore, despite a high seroincidence of NTS in infants, maternally acquired antibodies provided protection from seroconversion. Therefore, we propose prenatal immunization against NTS as a possible strategy for protecting infants from NTS disease., Background Nontyphoidal Salmonella (NTS) organisms are a major cause of gastroenteritis and bacteremia, but little is known about maternally acquired immunity and natural exposure in infant populations residing in areas where NTS disease is highly endemic. Methods We recruited 503 pregnant mothers and their infants (following delivery) from urban areas in Vietnam and followed infants until they were 1 year old. Exposure to the dominant NTS serovars, Salmonella enterica serovars Typhimurium and Enteritidis, were assessed using lipopolysaccharide (LPS) O antigen–specific antibodies. Antibody dynamics, the role of maternally acquired antibodies, and NTS seroincidence rates were modeled using multivariate linear risk factor models and generalized additive mixed-effect models. Results Transplacental transfer of NTS LPS–specific maternal antibodies to infants was highly efficient. Waning of transplacentally acquired NTS LPS–specific antibodies at 4 months of age left infants susceptible to Salmonella organisms, after which they began to seroconvert. High seroincidences of S. Typhimurium and S. Enteritidis LPS were observed, and infants born with higher anti-LPS titers had greater plasma bactericidal activity and longer protection from seroconversion. Conclusions Although Vietnamese infants have extensive exposure to NTS, maternally acquired antibodies appear to play a protective role against NTS infections during early infancy. These findings suggest that prenatal immunization may be an appropriate strategy to protect vulnerable infants from NTS disease.
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- 2018
18. The epidemiology and aetiology of diarrhoeal disease in infancy in southern Vietnam: a birth cohort study
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Phan Thi Thanh Ha, Corinne N. Thompson, Le Bich Lien, Stephen Baker, Nguyen Trong Hieu, Tran Thi Ngoc Dung, Katherine L. Anders, Voong Vinh Phat, Le Thi Phuong Tu, Cameron P. Simmons, Nguyen Van Vinh Chau, Nguyen Thi Van Thuy, Nguyen Thi Hong Tham, Nguyen Minh Nguyet, and Nguyen Thi Hong Van
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Microbiology (medical) ,Rotavirus ,Male ,medicine.medical_specialty ,Pediatrics ,Epidemiology ,viruses ,medicine.disease_cause ,Article ,Rotavirus Infections ,lcsh:Infectious and parasitic diseases ,fluids and secretions ,medicine ,Humans ,lcsh:RC109-216 ,Prospective Studies ,Prospective cohort study ,Caliciviridae Infections ,business.industry ,Incidence (epidemiology) ,Incidence ,Infectious diarrhoea ,Norovirus ,virus diseases ,Infant ,General Medicine ,Diarrhoeal disease ,Rotavirus vaccine ,3. Good health ,Infectious Diseases ,Vietnam ,Cohort ,Diarrhea, Infantile ,Female ,business ,Cohort study ,Infants ,Follow-Up Studies - Abstract
Highlights • The diarrhoeal disease burden in a large, prospective infant cohort in Vietnam is defined. • Minimum incidence of clinic-based diarrhoea in infants: 271/1000 infant-years. • Rotavirus was most commonly identified, followed by norovirus and bacterial pathogens. • Frequent repeat infections with the same pathogen within 1 year. • Inclusion of rotavirus in the immunization schedule for Vietnam is warranted., Summary Objectives Previous studies indicate a high burden of diarrhoeal disease in Vietnamese children, however longitudinal community-based data on burden and aetiology are limited. The findings from a large, prospective cohort study of diarrhoeal disease in infants in southern Vietnam are presented herein. Methods Infants were enrolled at birth in urban Ho Chi Minh City and a semi-rural district in southern Vietnam, and followed for 12 months (n = 6706). Diarrhoeal illness episodes were identified through clinic-based passive surveillance, hospital admissions, and self-reports. Results The minimum incidence of diarrhoeal illness in the first year of life was 271/1000 infant-years of observation for the whole cohort. Rotavirus was the most commonly detected pathogen (50% of positive samples), followed by norovirus (24%), Campylobacter (20%), Salmonella (18%), and Shigella (16%). Repeat infections were identified in 9% of infants infected with rotavirus, norovirus, Shigella, or Campylobacter, and 13% of those with Salmonella infections. Conclusions The minimum incidence of diarrhoeal disease in infants in both urban and semi-rural settings in southern Vietnam was quantified prospectively. A large proportion of laboratory-diagnosed disease was caused by rotavirus and norovirus. These data highlight the unmet need for a rotavirus vaccine in Vietnam and provide evidence of the previously unrecognized burden of norovirus in infants.
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- 2015
19. Kinetics of Organic Biodegradation and Biogas Production in the Pilot-Scale Moving Bed Biofilm Reactor (MBBR) for Piggery Wastewater Treatment.
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Nguyen, Thi Ha, Nguyen, Manh Khai, Le, Thi Hoang Oanh, Bui, Thanh Tu, Nguyen, Trong Hieu, Nguyen, Truong Quan, and Ngo, Anh van
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MOVING bed reactors ,BIOGAS production ,BIOGAS ,WASTEWATER treatment ,SWINE housing ,ANALYTICAL mechanics ,UPFLOW anaerobic sludge blanket reactors ,BIODEGRADATION - Abstract
In this research, the kinetics of COD biodegradation and biogas production in a moving bed biofilm reactor (MBBR) at pilot scale (10 m
3 ) for piggery wastewater treatment were investigated. Polyethylene (PE) was used as a carrying material, with organic loading rates (OLRs) of 10, 15, and 18 kgCOD/m3 day in accordance to hydraulic retention times (HRTs) of 0.56, 0.37, and 0.3 day. The results showed that a high COD removal efficiency was obtained in the range of 68–78% with the influent COD of 5.2–5.8 g/L at all 3 HRTs. About COD degradation kinetics, in comparison to the first- and second-order kinetics and the Monod model, Stover–Kincannon model showed the best fit with R2 0.98 and a saturation value constant (KB ) and a maximum utilization rate (Umax ) of 52.40 g/L day and 82.65 g/L day, respectively. The first- and second-order kinetics with all 3 HRTs and Monod model with the HRT of 0.56 day also obtained high R2 values. Therefore, these kinetics and models can be further considered to be used for predicting the kinetic characteristics of the MBBR system in piggery wastewater treatment process. The result of a 6-month operation of the MBBR was that biogas production was mostly in the operating period of days 17 to 80, around 0.2 to 0.3 and 0.15–0.20 L/gCODconverted , respectively, and then reduction at an OLR of 18 kgCOD/m3 . After the start-up stage, day 35 biogas cumulative volume fluctuated from 20 to 30 m3 /day and reached approximately 3500 m3 for 178 days during the whole digestive process. Methane is accounted for about 65–70% of biogas with concentration around 400 mg/L. [ABSTRACT FROM AUTHOR]- Published
- 2021
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20. International conference ICAWA 2016 : extended book of abstract : the AWA project : ecosystem approach to the management of fisheries and the marine environment in West African waters
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Brochier, Timothée, Nguyen Trong Hieu, Auger, Pierre, Machu, Eric, Brehmer, Patrice, Brehmer, Patrice (ed.), Ba, B. (ed.), and Kraus, G. (ed.)
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A mathematical model is developed to represent an idealized system of a shared fish stock associated with different exclusive economic zones. We apply such model on small pelagic fisheries shared between Southern Morocco, Mauritania and the Senegambia. The complete model is a set of six ordinary differential equations describing the time evolution of the fish biomass and the fishing effort in the three zones. The fish species targeted as small pelagics could be consid- ered to perform quick displacement between the different zones, in comparison to their growth and harvesting. We take advantage of the two time scales to obtain a reduced model governing the total fish biomass of the system and fishing efforts in each zone. We study existence and stability of equilibrium points of the reduced model. The simulations show that as a result of competition between fisheries per zone there can only be one winner in the general case. Nevertheless there is also an arising case that allows an operational management of shared fisheries by acting on the cost of fishing unit effort, indeed we found that a large number of equilibrium exist. From this last case the initial distribution of fishing effort strongly impact the optimal equilibrium that can be reached. Lastly the model report that the country with the highest carrying capacity density may get less landings when collaborating with other countries than if it minimise its fishing costs. Such findings should allows regional fisheries organizations to get potential new ways for neighbouring fish stock management plan.
- Published
- 2017
21. A cohort study to define the age-specific incidence and risk factors of Shigella diarrhoeal infections in Vietnamese children: a study protocol
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James Campbell, Lu Lan Vi, Le Thi Phuong Tu, Stephen Baker, Nguyen Trong Hieu, Nguyen Thi Van Thuy, Corinne N. Thompson, Tran Do Hoang Nhu, Vu Thuy Duong, Tran Thi Thao Ly, Le Thi Quynh Nhi, Nguyen Vinh Van Chau, Ha Thanh Tuyen, Nguyen Thi Thanh Nhan, Pham Van Minh, Cameron P. Simmons, Guy E. Thwaites, and Katherine L. Anders
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Male ,medicine.medical_specialty ,Pediatrics ,Active surveillance ,Disease ,Cohort Studies ,Study Protocol ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Epidemiology ,Humans ,Medicine ,030212 general & internal medicine ,Seroconversion ,Shigella vaccine ,Dysentery, Bacillary ,0303 health sciences ,030306 microbiology ,business.industry ,Incidence ,Public health ,Incidence (epidemiology) ,Cohort ,Age Factors ,Public Health, Environmental and Occupational Health ,Infant ,Diarrhoea ,3. Good health ,Vietnam ,Research Design ,Child, Preschool ,Female ,Shigella ,business ,Cohort study - Abstract
BACKGROUND: Shigella spp. are one of the most common causes of paediatric dysentery globally, responsible for a substantial proportion of diarrhoeal disease morbidity and mortality, particularly in industrialising regions. Alarming levels of antimicrobial resistance are now reported in S. flexneri and S. sonnei, hampering treatment options. Little is known, however, about the burden of infection and disease due to Shigella spp. in the community. METHODS/DESIGN: In order to estimate the incidence of this bacterial infection in the community in Ho Chi Minh City, Vietnam we have designed a longitudinal cohort to follow up approximately 700 children aged 12-60 months for two years with active and passive surveillance for diarrhoeal disease. Children will be seen at 6 month intervals for health checks where blood and stool samples will be collected. Families will also be contacted every two weeks for information on presence of diarrhoea in the child. Upon report of a diarrhoeal disease episode, study nurses will either travel to the family home to perform an evaluation or the family will attend a study hospital at a reduced cost, where a stool sample will also be collected. Case report forms collected at this time will detail information regarding disease history, risk factors and presence of disease in the household.Outcomes will include (i) age-specific incidence of Shigella spp. and other agents of diarrhoeal disease in the community, (ii) risk factors for identified aetiologies, (iii) rates of seroconversion to a host of gastrointestinal pathogens in the first few years of life. Further work regarding the longitudinal immune response to a variety of Shigella antigens, host genetics and candidate vaccine/diagnostic proteins will also be conducted. DISCUSSION: This is the largest longitudinal cohort with active surveillance designed specifically to investigate Shigella infection and disease. The study is strengthened by the active surveillance component, which will likely capture a substantial proportion of episodes not normally identified through passive or hospital-based surveillance. It is hoped that information from this study will aid in the design and implementation of Shigella vaccine trials in the future.
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- 2016
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22. Toll-like receptor 4 (TLR4) and typhoid fever in Vietnam
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Sarah J. Dunstan, Nguyen Trong Hieu, Le Thi Phuong, Nguyen Tran Chinh, Nguyen Thi Hue, Mai Ngoc Lanh, Tran Tinh Hien, Jeremy Farrar, and Ha Vinh
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Male ,DNA Mutational Analysis ,Immunology/Innate Immunity ,lcsh:Medicine ,Infectious Diseases/Bacterial Infections ,0302 clinical medicine ,Gene Frequency ,Tropical medicine ,Genotype ,Ethnicity ,lcsh:Science ,Promoter Regions, Genetic ,Genetics and Genomics/Genetics of Disease ,Genetics ,0303 health sciences ,education.field_of_study ,Multidisciplinary ,Exons ,3. Good health ,Vietnam ,Female ,Research Article ,Population ,Mutation, Missense ,Single-nucleotide polymorphism ,Biology ,Polymorphism, Single Nucleotide ,Typhoid fever ,03 medical and health sciences ,Immunology/Immunity to Infections ,Genetic variation ,medicine ,Genetic predisposition ,Humans ,Genetic Predisposition to Disease ,Typhoid Fever ,Allele ,education ,Allele frequency ,Alleles ,030304 developmental biology ,lcsh:R ,medicine.disease ,Protein Structure, Tertiary ,Toll-Like Receptor 4 ,Case-Control Studies ,Immunology ,lcsh:Q ,030215 immunology - Abstract
Understanding the host genetic susceptibility to typhoid fever may provide a better understanding of pathogenesis and help in the development of new therapeutics and vaccines. Here we determine the genetic variation within the human TLR4 gene encoding the principal receptor for bacterial endotoxin recognition in typhoid fever patients. It is possible that genetic variants of TLR4 could detrimentally affect the innate immune response against S. typhi infection. Mutation detection and genotyping of TLR4 was performed on DNA from 414 Vietnamese typhoid fever patients and 372 population controls. dHPLC detected a total of 10 polymorphisms within the upstream and exonic regions of TLR4, of which 7 are novel. Two SNPs, T4025A and C4215G, were more frequent in typhoid cases than in controls however due to their low allele frequencies they showed borderline significance (T4025A: OR 1.9, 95%Cl 0.9-4.3, P 0.07 and C4215G: OR 6.7, 95%Cl 0.8-307, P 0.04). Six missense mutations were identified, with 5/6 positioned in the ectoplasmic domain. Four missense mutations and one promoter SNP (A-271G) were only present in typhoid cases, albeit at low allele frequencies. Here we determined the extent of genetic variation within TLR4 in a Vietnamese population and suggest that TLR4 may be involved in defense against typhoid fever in this population. © 2009 Hue et al.
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- 2016
23. Worldwide distribution of human papillomavirus types in cytologically normal women in the International Agency for Research on Cancer HPV prevalence surveys: a pooled analysis
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Guglielmo Ronco, Chris J. L. M. Meijer, Gary M. Clifford, Jaiyeola Thomas, Hai-Rim Shin, S de Sanjosé, Sukhon Sukvirach, Elena Matos, Nguyen Trong Hieu, Nubia Muñoz, S. Tunsakul, P. T H Anh, Silvano Gallus, Mónica Molano, Silvia Franceschi, Salvatore Vaccarella, R. Rajkumar, Peter J.F. Snijders, Catterina Ferreccio, Rolando Herrero, and VU University medical center
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Adult ,medicine.medical_specialty ,Pathology ,Adolescent ,Population ,Cervix Uteri ,Global Health ,Women in development ,Seroepidemiologic Studies ,Epidemiology ,Prevalence ,Global health ,Humans ,Medicine ,education ,Papillomaviridae ,Aged ,Vaginal Smears ,Cervical cancer ,education.field_of_study ,business.industry ,Incidence (epidemiology) ,Papillomavirus Infections ,virus diseases ,General Medicine ,Odds ratio ,Middle Aged ,medicine.disease ,female genital diseases and pregnancy complications ,Specimen collection ,Female ,business ,Demography - Abstract
Summary Background The proportion of women infected with human papillomavirus (HPV) varies greatly across populations, as might the distribution of HPV types. We aimed to compare HPV-type distribution in representative samples of women from different world regions. Methods Women were randomly selected from the general population of 13 areas from 11 countries (Nigeria, India, Vietnam, Thailand, Korea, Colombia, Argentina, Chile, the Netherlands, Italy, and Spain). A standardised protocol was used for cervical specimen collection. All HPV testing was by GP5+/6+ PCR-based EIA. The proportion of HPV-positive women infected with different HPV types was compared by study area and between pooled regions with age-adjusted odds ratios (ORs) with corresponding 95% floating CIs. Findings 15 613 women aged 15–74 years without cytological abnormalities were included in a pooled analysis. Age-standardised HPV prevalence varied nearly 20 times between populations, from 1·4% (95% CI 0·5–2·2) in Spain to 25·6% (22·4–28·8) in Nigeria. Although both overall HPV prevalence and HPV16 prevalence were highest in sub-Saharan Africa, HPV-positive women in Europe were significantly more likely to be infected with HPV16 than were those in sub-Saharan Africa (OR 2·64, p=0·0002), and were significantly less likely to be infected with high-risk HPV types other than HPV16 (OR 0·57, p=0·004) and/or low-risk HPV types (OR 0·44. p=0·0002). Women from South America had HPV-type distribution in between those from sub-Saharan Africa and Europe. Heterogeneity between areas of Asia was significant. Interpretation Heterogeneity in HPV type distribution among women from different populations should be taken into account when developing screening tests for the virus and predicting the effect of vaccines on the incidence of infection.
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- 2005
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24. Mathematical population dynamics models in deterministic and stochastic environments
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Nguyen, Trong Hieu, Unité de modélisation mathématique et informatique des systèmes complexes [Bondy] (UMMISCO), Université Cadi Ayyad [Marrakech] (UCA)-Université de Yaoundé I-Université Gaston Bergé (Saint-Louis, Sénégal)-Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD)-Institut de la francophonie pour l'informatique-Université Pierre et Marie Curie - Paris 6 (UPMC), Université Pierre et Marie Curie - Paris VI, Pierre Auger, Huu Du Nguyen, and Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Université de Yaoundé I-Institut de la francophonie pour l'informatique-Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD)-Université Gaston Bergé (Saint-Louis, Sénégal)-Université Cadi Ayyad [Marrakech] (UCA)
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Intraguild predation ,Prédation intra-Guilde ,[MATH.MATH-GM]Mathematics [math]/General Mathematics [math.GM] ,Bancs de poisson ,Migration rapide ,Modèle SIRS ,Fast migration ,Équation de Lotka-Volterra ,Bruit télégraphique - Abstract
In this thesis, we consider mathematical population dynamics models in deterministic and stochastic environments. For deterministic environments, we study three models: an intraguild model with the effects of spatial heterogeneous environment and fast migration of individuals; a fishery model with Marine Protected Area where fishing is prohibited and an area where the fish population is harvested; a predator-prey model which has one prey and two predators with Beddington-DeAngelis functional responses. For stochastic environments, we study SIRS epidemic model and predator-prey models under telegraph noise. We try to present the dynamical behavior of these models and show out the existence or vanishing of species in the models.; Dans ce travail de thèse, nous étudions des modèles mathématiques de la dynamique des populations en environnements déterministe et stochastique. Pour les environnements déterministes, nous considérons trois modèles. Le premier est un modèle intra-guilde prenant en compte des effets d'un environnement spatial hétérogène avec une migration rapide des individus entre les différents sites. Le deuxième est un modèle de pêche dans une zone constituée d’une aire marine protégée où la pêche est interdite et d’une zone où la population de poissons est pêchée. Enfin le troisième est un modèle prédateur-proie considérant une proie et deux prédateurs avec des réponses fonctionnelles de Beddington-DeAngelis. Pour les environnements stochastiques, nous étudions un modèle épidémique SIRS et un modèle prédateur-proie en prenant en compte un bruit télégraphique. Nous étudions le comportement dynamique de ces modèles et nous recherchons les conditions de maintien ou de disparition des espèces modélisées.
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- 2014
25. Effect of Small Versus Large Clusters of Fish School on the Yield of a Purse-Seine Small Pelagic Fishery Including a Marine Protected Area
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Patrice Brehmer, Timothée Brochier, Nguyen Trong Hieu, Nguyen-Huu Tri, Pierre Auger, Hung Vuong Hospital, Unité de modélisation mathématique et informatique des systèmes complexes [Bondy] (UMMISCO), Université de Yaoundé I-Institut de la francophonie pour l'informatique-Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD)-Université Gaston Bergé (Saint-Louis, Sénégal)-Université Cadi Ayyad [Marrakech] (UCA)-Sorbonne Université (SU)-Institut de Recherche pour le Développement (IRD [France-Nord]), Vietnam National University [Hanoï] (VNU), Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut de recherche pour le développement [Dakar, Sénégal] (IRD Hann Maristes), Institut Sénégalais de Recherches Agricoles [Dakar] (ISRA), Institut Rhône-Alpin des systèmes complexes (IXXI), École normale supérieure de Lyon (ENS de Lyon)-Université Lumière - Lyon 2 (UL2)-Université Joseph Fourier - Grenoble 1 (UJF)-Université Jean Moulin - Lyon 3 (UJML), Université de Lyon-Université de Lyon-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre National de la Recherche Scientifique (CNRS), Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD), Institut de Recherche pour le Développement (IRD [France-Nord])-Institut de la francophonie pour l'informatique-Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD)-Université Gaston Bergé (Saint-Louis, Sénégal)-Université Cadi Ayyad [Marrakech] (UCA)-Université de Yaoundé I-Sorbonne Université (SU), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), École normale supérieure - Lyon (ENS Lyon)-Université Lumière - Lyon 2 (UL2)-Université Joseph Fourier - Grenoble 1 (UJF)-Université Jean Moulin - Lyon 3 (UJML), and Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre National de la Recherche Scientifique (CNRS)
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Scale (ratio) ,Yield (finance) ,Fishing ,Marine protected area ,Fisheries ,Marine Biology ,Small pelagic fish ,Fish school ,General Biochemistry, Genetics and Molecular Biology ,Clusters ,Optimal yield ,Animals ,14. Life underwater ,Population dynamics of fisheries ,Three level system ,General Environmental Science ,Applied Mathematics ,ACL ,Fishes ,Sustainable fishery ,Aggregation of variables ,Pelagic zone ,General Medicine ,Models, Theoretical ,Fishery ,Philosophy ,[SDE]Environmental Sciences ,Environmental science ,%22">Fish ,Animal Migration ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,General Agricultural and Biological Sciences - Abstract
International audience; We consider a fishery model with two sites: (1) a marine protected area (MPA) where fishing is prohibited and (2) an area where the fish population is harvested. We assume that fish can migrate from MPA to fishing area at a very fast time scale and fish spatial organisation can change from small to large clusters of school at a fast time scale. The growth of the fish population and the catch are assumed to occur at a slow time scale. The complete model is a system of five ordinary differential equations with three time scales. We take advantage of the time scales using aggregation of variables methods to derive a reduced model governing the total fish density and fishing effort at the slow time scale. We analyze this aggregated model and show that under some conditions, there exists an equilibrium corresponding to a sustainable fishery. Our results suggest that in small pelagic fisheries the yield is maximum for a fish population distributed among both small and large clusters of school.
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- 2014
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26. Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1
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Nguyen Thi Hong Tham, Dennis E.K. Tan, Rick Twee-Hee Ong, Tran Nguyen Bich Chau, Mai Ngoc Lanh, Ta Van Tram, Hoang Truong Long, Jeremy Farrar, Bridget Wills, Nguyen Minh Tuan, Nguyen Minh Nguyet, Tran Thi Gan, Nguyen Thi Nguyet Binh, Tran Thi Nhu Thuy, Sarah J. Dunstan, Martin L. Hibberd, Cameron P. Simmons, Nguyen Van Vinh Chau, Nguyen Trong Hieu, Sonia Davila, Junxiong Pang, Yik Ying Teo, Le Bich Lien, Le Trung Tri, Anavaj Sakuntabhai, Chiea Chuen Khor, National University of Singapore (NUS), Genome Institute of Singapore (GIS), Oxford University Clinical Research Unit [Ho Chi Minh City] (OUCRU), Nuffield Department of Clinical Medicine [Oxford], University of Oxford, Tien Giang Hospital, Sa Dec Hospital, Children's Hospital No.1 [Ho Chi Minh City], Dong Thap Hospital, Hung Vuong Hospital, Hospital for Tropical Diseases, Children's Hospital No. 2 [Ho Chi Minh City], Génétique de la Réponse aux Infections chez l'Homme, Institut Pasteur [Paris] (IP), Mahidol University [Bangkok], This work was supported by the Wellcome Trust, United Kingdom (grant 088791/A/09/Z and 084368/Z/07/Z), and the Agency for Science, Technology and Research, Singapore., University of Oxford [Oxford], and Institut Pasteur [Paris]
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030231 tropical medicine ,Genome-wide association study ,Single-nucleotide polymorphism ,Human leukocyte antigen ,Biology ,Major histocompatibility complex ,Polymorphism, Single Nucleotide ,Article ,Dengue fever ,MESH: Histocompatibility Antigens Class I ,03 medical and health sciences ,Phosphoinositide Phospholipase C ,0302 clinical medicine ,Genetics ,medicine ,MESH: Phosphoinositide Phospholipase C ,Humans ,030304 developmental biology ,0303 health sciences ,[SDV.GEN]Life Sciences [q-bio]/Genetics ,MESH: Humans ,MESH: Polymorphism, Single Nucleotide ,Histocompatibility Antigens Class I ,Case-control study ,Odds ratio ,medicine.disease ,MESH: Case-Control Studies ,Confidence interval ,3. Good health ,Case-Control Studies ,Immunology ,MESH: Genome-Wide Association Study ,biology.protein ,Genome-Wide Association Study - Abstract
Hypovolemic shock (dengue shock syndrome (DSS)) is the most common life-threatening complication of dengue. We conducted a genome-wide association study of 2,008 pediatric cases treated for DSS and 2,018 controls from Vietnam. Replication of the most significantly associated markers was carried out in an independent Vietnamese sample of 1,737 cases and 2,934 controls. SNPs at two loci showed genome-wide significant association with DSS. We identified a susceptibility locus at MICB (major histocompatibility complex (MHC) class I polypeptide-related sequence B), which was within the broad MHC region on chromosome 6 but outside the class I and class II HLA loci (rs3132468, P meta = 4.41 × 10 -11, per-allele odds ratio (OR) = 1.34 (95% confidence interval: 1.23-1.46)). We identified associated variants within PLCE1 (phospholipase C, epsilon 1) on chromosome 10 (rs3765524, P meta = 3.08 × 10 -10, per-allele OR = 0.80 (95% confidence interval: 0.75-0.86)). We identify two loci associated with susceptibility to DSS in people with dengue, suggesting possible mechanisms for this severe complication of dengue. © 2011 Nature America, Inc. All rights reserved.
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- 2011
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27. Seroprevalence of antibodies against human papillomavirus (HPV) types 16 and 18 in four continents: The International Agency for Research on Cancer HPV prevalence surveys
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Pham Thi Hoang Anh, Sukhon Sukvirach, Gary M. Clifford, Elena Matos, Hai Rim Shin, Silvia de Sanjosé, Antoine Touzé, Silvia Franceschi, Peter J.F. Snijders, Salvatore Vaccarella, Pierre Coursaget, Jaiye O. Thomas, Nubia Muñoz, Latifa Boursaghin, Charles C. Hsu, Rolando Herrero, Nguyen Trong Hieu, Julien Gaitan, Chris J.L.M. Meijer, Pathology, and CCA - Oncogenesis
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Adult ,medicine.medical_specialty ,Epidemiology ,viruses ,Population ,Enzyme-Linked Immunosorbent Assay ,Global Health ,Serology ,Seroepidemiologic Studies ,medicine ,Seroprevalence ,Humans ,education ,education.field_of_study ,Human papillomavirus 16 ,Human papillomavirus 18 ,business.industry ,Papillomavirus Infections ,HPV infection ,Cancer ,virus diseases ,medicine.disease ,Middle age ,female genital diseases and pregnancy complications ,Oncology ,Immunology ,Female ,business ,Demography - Abstract
Silvia de Sanjosé, [et al.], Background: Few human papillomavirus (HPV) seroprevalence studies have been carried out in women from low-resource countries. Methods: Seroprevalence of antibodies against HPV16 and HPV18 was assessed in 7,074 women ≥15 years of age (median 44 years) from eight world areas. Serum antibodies against HPV16 and HPV18 were tested for using enzyme-linked immunosorbent assay. HPV DNA was assessed using a general primer GP5 +/6+-mediated PCR. Results: HPV16 and HPV18 seroprevalence both ranged from, Grant Support: Bill and Melinda Gates Foundation (grant 35537).
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- 2010
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28. High prevalence of plasmid-mediated quinolone resistance determinants in commensal members of the Enterobacteriaceae in Ho Chi Minh City, Vietnam
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Jeremy Farrar, Nguyen Van Minh Hoang, Nguyen Van Vinh Chau, Le Thi Phuong Tu, Le Thi Phuong Thao, Le Thi Minh Vien, Constance Schultsz, Lam Minh Yen, Tran Thi Thu Nga, James Iain Campbell, Stephen Baker, Nguyen Trong Hieu, Cao Thu Thuy, Amsterdam institute for Infection and Immunity, and Infectious diseases
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Adult ,Microbiology (medical) ,Nalidixic acid ,medicine.drug_class ,Antibiotics ,Prevalence ,Ceftazidime ,Drug resistance ,Quinolones ,Microbiology ,03 medical and health sciences ,Plasmid ,Bacterial Proteins ,Enterobacteriaceae ,Drug Resistance, Multiple, Bacterial ,medicine ,Humans ,Child ,030304 developmental biology ,0303 health sciences ,biology ,Antimicrobial Agents and Chemotherapy ,030306 microbiology ,Enterobacteriaceae Infections ,Infant ,Gene Expression Regulation, Bacterial ,General Medicine ,biology.organism_classification ,Virology ,Anti-Bacterial Agents ,3. Good health ,Ciprofloxacin ,Vietnam ,Child, Preschool ,Carrier State ,Mutation ,Plasmids ,medicine.drug - Abstract
Antimicrobial-resistant pathogenic members of theEnterobacteriaceaeare a well-defined global problem. We hypothesized that one of the main reservoirs of dissemination of antimicrobial resistance genes in Vietnam is non-pathogenic intestinal flora, and sought to isolate antimicrobial-resistant organisms from hospitalized patients and non-hospitalized healthy individuals in Ho Chi Minh City. The results identified substantial faecal carriage of gentamicin-, ceftazidime- and nalidixic acid-resistant members of theEnterobacteriaceaein both hospitalized patients and non-hospitalized healthy individuals. A high prevalence of quinolone resistance determinants was identified, particularly theqnrSgene, in both community- and hospital-associated strains. Furthermore, the results demonstrated that a combination of quinolone resistance determinants can confer resistance to nalidixic acid and ciprofloxacin, even in the apparent absence of additional chromosomal resistance mutations in wild-type strains and laboratory strains with transferred plasmids. These data suggest that intestinal commensal organisms are a significant reservoir for the dissemination of plasmid-mediated quinolone resistance in Ho Chi Minh City.
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- 2009
29. Geographic variation in the prevalence of kaposi sarcoma-associated herpesvirus and risk factors for transmission
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Nguyen Trong Hieu, Sukhon Sukvirach, Elena Matos, Silvia de Sanjosé, Nubia Muñoz, Susana Perez-Alvarez, Jaiyeola Thomas, Eduardo Lazcano, Yolanda Benavente, Rolando Herrero, Hai-Rim Shin, Pham Thi Hoang Anh, Mónica Molano, Denise Whitby, Georgina Mbisa, and Silvia Franceschi
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Adult ,Cross-Cultural Comparison ,medicine.medical_specialty ,Sexual Behavior ,Prevalence ,Nigeria ,Colombia ,law.invention ,Viral Proteins ,Risk Factors ,law ,Epidemiology ,Odds Ratio ,Humans ,Immunology and Allergy ,Medicine ,Gammaherpesvirinae ,Risk factor ,Antigens, Viral ,Sarcoma, Kaposi ,Kaposi's sarcoma ,Glycoproteins ,Geographic difference ,biology ,business.industry ,virus diseases ,Herpesviridae Infections ,Odds ratio ,Middle Aged ,Thailand ,biology.organism_classification ,medicine.disease ,Virology ,Infectious Diseases ,Transmission (mechanics) ,Herpesvirus 8, Human ,Female ,business ,Demography - Abstract
Background. The aim of the present study was to estimate the prevalence of Kaposi sarcoma-associated herpesvirus (KSHV) in the female general population, to define geographic variation in and heterosexual transmission of the virus. Methods. The study included 10,963 women from 9 countries for whom information on sociodemographic characteristics and reproductive, sexual, and smoking behaviors were available. Antibodies against KSHV that encoded lytic antigen K8.1 and latent antigen ORF73 were determined. Results. The range of prevalence of KSHV (defined as detection of any antigen) was 3.81%-46.02%, with significant geographic variation noted. In Nigeria, the prevalence was 46.02%; in Colombia, 13.32%; in Costa Rica, 9.81%; in Argentina, 6.40%; in Ho Chi Minh City, Vietnam, 15.50%; in Hanoi, Vietnam, 11.26%; in Songkla, Thailand, 10%; in Lampang, Thailand, 8.63%; in Korea, 4.93%; and in Spain, 3.65%. The prevalence of KSHV slightly increased with increasing age among subjects in geographic areas where the prevalence of KSHV was high, such as Nigeria and Colombia, and it significantly decreased with increases in the educational level attained by subjects in those areas. KSHV was not statistically associated with age at first sexual intercourse, number of sex partners, number of children, patterns of oral contraceptive use, presence of cervical human papillomavirus DNA, or smoking status. Conclusions. The study provides comparable estimates of KSHV prevalence in diverse cultural settings across 4 continents and provides evidence that sexual transmission of KSHV is not a major source of infection in the general population. © 2009 by the Infectious Diseases Society of America., Financial support: National Cancer Institute, National Institutes of Health (contract N01-CO-12400); Spanish platform Centro de Investigación Biomédica en Red de Epidemiología y Salud Pública (grant 06/0673).
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- 2009
30. The influence of host and bacterial genotype on the development of disseminated disease with Mycobacterium tuberculosis
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Dau Quang Tho, Sebastien Gagneux, Mai N. T. Huyen, Dick van Soolingen, Tran Tinh Hien, Maxine Caws, Nguyen Duc Bang, Jeremy Farrar, Guy E. Thwaites, Phan Thi Hoang Anh, Sarah J. Dunstan, Phan Minh Duy, Nguyen Tran Chinh, Nguyen Van Vinh Chau, Kasia Stepniewska, Nguyen Huy Dung, Peter M. Small, Estee Torok, Marianne A B van der Sande, Nguyen Thuy Thuong Thuong, Nguyen Thi Quynh Nhu, Kristin Kremer, Thomas R. Hawn, Tran Huu Loc, Nguyen Thi Hong Duyen, Hoang Thi Quy, Nguyen Ngoc Lan, and Nguyen Trong Hieu
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Male ,Immunology/Innate Immunity ,Microbiology/Innate Immunity ,Infectious Diseases/Bacterial Infections ,Genotype ,Disseminated disease ,Biology (General) ,0303 health sciences ,education.field_of_study ,Immunity, Cellular ,Middle Aged ,3. Good health ,Vietnam ,Tuberculosis, Meningeal ,Host-Pathogen Interactions ,Meningeal Tuberculosis ,Population study ,Female ,Research Article ,Adult ,Tuberculosis ,Adolescent ,QH301-705.5 ,Immunology ,Population ,Biology ,Microbiology ,Polymorphism, Single Nucleotide ,Tuberculous meningitis ,Mycobacterium tuberculosis ,03 medical and health sciences ,Virology ,Genetics ,medicine ,Humans ,Genetic Predisposition to Disease ,education ,Molecular Biology ,Tuberculosis, Pulmonary ,030304 developmental biology ,Neurological Disorders/Infectious Diseases of the Nervous System ,Aged ,030306 microbiology ,Microbiology/Medical Microbiology ,RC581-607 ,medicine.disease ,biology.organism_classification ,Toll-Like Receptor 2 ,Infectious Diseases/Neglected Tropical Diseases ,Genes, Bacterial ,Parasitology ,Immunologic diseases. Allergy ,Immunology/Genetics of the Immune System - Abstract
The factors that govern the development of tuberculosis disease are incompletely understood. We hypothesized that some strains of Mycobacterium tuberculosis (M. tuberculosis) are more capable of causing disseminated disease than others and may be associated with polymorphisms in host genes responsible for the innate immune response to infection. We compared the host and bacterial genotype in 187 Vietnamese adults with tuberculous meningitis (TBM) and 237 Vietnamese adults with uncomplicated pulmonary tuberculosis. The host genotype of tuberculosis cases was also compared with the genotype of 392 cord blood controls from the same population. Isolates of M. tuberculosis were genotyped by large sequence polymorphisms. The hosts were defined by polymorphisms in genes encoding Toll-interleukin 1 receptor domain containing adaptor protein (TIRAP) and Toll-like receptor-2 (TLR-2). We found a significant protective association between the Euro-American lineage of M. tuberculosis and pulmonary rather than meningeal tuberculosis (Odds ratio (OR) for causing TBM 0.395, 95% confidence intervals (C.I.) 0.193–0.806, P = 0.009), suggesting these strains are less capable of extra-pulmonary dissemination than others in the study population. We also found that individuals with the C allele of TLR-2 T597C allele were more likely to have tuberculosis caused by the East-Asian/Beijing genotype (OR = 1.57 [95% C.I. 1.15–2.15]) than other individuals. The study provides evidence that M. tuberculosis genotype influences clinical disease phenotype and demonstrates, for the first time, a significant interaction between host and bacterial genotypes and the development of tuberculosis., Author Summary Tuberculosis, caused by the bacterium Mycobacterium tuberculosis, kills over 2 million people each year. It is estimated that approximately one-third of the world population is infected with M. tuberculosis, though the majority will never develop active disease. The most severe form of tuberculosis occurs when the bacterium spreads to the brain to cause meningitis. We examined whether the genetic variation of the person and the bacteria influenced the type of disease a person develops. We have previously shown that certain mutations in genes of the human immune system can predispose adults in Vietnam to developing tuberculous meningitis. In this study we show that some strains of M. tuberculosis commonly found in Europe and America are less likely to cause tuberculous meningitis in Vietnamese adults than strains predominantly found in Asia. We then looked at the interaction between M. tuberculosis strains and mutations in human immune genes and show that a particular mutation, TLR2 T597C, is more commonly found in patients infected with the East-Asian/Beijing strains of M. tuberculosis. This is the first study to look at both the host and pathogen genotypes together in tuberculosis infection, and the findings suggest that the outcome of exposure to M. tuberculosis can depend on both the human genotype and the bacterial genotype.
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- 2008
31. A TNF region haplotype offers protection from typhoid fever in Vietnamese patients
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Andrew P. Morris, Deborah House, Dominic Kwiatowski, Mai Ngoc Lanh, Nguyen Thi Hue, Nguyen Trong Hieu, Kirk A. Rockett, P MorrisMahamadou Diakite, Jeremy Farrar, Gordon Dougan, Christopher M. Parry, Le Thi Phuong, Sarah J. Dunstan, Tran Tinh Hien, Julian Forton, and Ha Vinh
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Male ,Linkage disequilibrium ,Single-nucleotide polymorphism ,Locus (genetics) ,Biology ,Polymorphism, Single Nucleotide ,Linkage Disequilibrium ,Article ,Typhoid fever ,Genetics ,medicine ,Cluster Analysis ,Humans ,Family ,Genetic Predisposition to Disease ,Typhoid Fever ,Allele ,Genetics (clinical) ,Tumor Necrosis Factor-alpha ,Haplotype ,Case-control study ,Chromosome Mapping ,medicine.disease ,Minor allele frequency ,Haplotypes ,Vietnam ,Case-Control Studies ,Immunology ,Female - Abstract
The genomic region surrounding the TNF locus on human chromosome 6 has previously been associated with typhoid fever in Vietnam (Dunstan et al. in J Infect Dis 183:261-268, 2001). We used a haplotypic approach to understand this association further. Eighty single nucleotide polymorphisms (SNPs) spanning a 150 kb region were genotyped in 95 Vietnamese individuals (typhoid case/mother/father trios). A subset of data from 33 SNPs with a minor allele frequency of >4.3% was used to construct haplotypes. Fifteen SNPs, which tagged the 42 constructed haplotypes were selected. The haplotype tagging SNPs (T1-T15) were genotyped in 380 confirmed typhoid cases and 380 Vietnamese ethnically matched controls. Allelic frequencies of seven SNPs (T1, T2, T3, T5, T6, T7, T8) were significantly different between typhoid cases and controls. Logistic regression results support the hypothesis that there is just one signal associated with disease at this locus. Haplotype-based analysis of the tag SNPs provided positive evidence of association with typhoid (posterior probability 0.821). The analysis highlighted a low-risk cluster of haplotypes that each carry the minor allele of T1 or T7, but not both, and otherwise carry the combination of alleles *12122*1111 at T1-T11, further supporting the one associated signal hypothesis. Finally, individuals that carry the typhoid fever protective haplotype *12122*1111 also produce a relatively low TNF-alpha response to LPS.
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- 2007
32. Epidemiology and Virology of Acute Respiratory Infections During the First Year of Life.
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Anders, Katherine L., Hoa L. Nguyen, Nguyet Minh Nguyen, Nguyen Thi Van Thuy, Nguyen Thi Hong Van, Nguyen Trong Hieu, Nguyen Thi Hong Tham, Phan Thi Thanh Ha, Le Bich Lien, Nguyen Van Vinh Chau, Vu Thi Ty Hang, van Doorn, H. Rogier, and Simmons, Cameron P.
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- 2015
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33. SPATIAL HETEROGENEITY, FAST MIGRATION AND COEXISTENCE OF INTRAGUILD PREDATION DYNAMICS.
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NGUYEN, TRONG HIEU and NGUYEN-NGOC, DOANH
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ANIMAL migration , *DEMOGRAPHY , *ECOLOGICAL heterogeneity , *PREDATION , *COEXISTENCE of species - Abstract
In this paper, we investigate effects of spatial heterogeneous environment and fast migration of individuals on the coexistence of the intraguild predation (IGP) dynamics. We present a two-patch model. We assume that on one patch two species compete for a common resource, and on the other patch one species can capture the other one for the maintenance. We also assume IGP individuals are able to migrate between the two patches and the migration process acts on a fast time scale in comparison with demography, predation and competition processes. We show that under certain conditions the heterogeneous environment and fast migration can lead to coexistence of the two species. [ABSTRACT FROM AUTHOR]
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- 2015
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34. A cohort study to define the age-specific incidence and risk factors of Shigella diarrhoeal infections in Vietnamese children: a study protocol.
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Thompson, Corinne N., Anders, Katherine L., Le Thi Quynh Nhi, Ha Thanh Tuyen, Pham Van Minh, Le Thi Phuong Tu, Tran Do Hoang Nhu, Nguyen Thi Thanh Nhan, Tran Thi Thao Ly, Vu Thuy Duong, Lu Lan Vi, Nguyen Thi Van Thuy, Nguyen Trong Hieu, Nguyen Vinh Van Chau, Campbell, James I., Thwaites, Guy, Simmons, Cameron, and Baker, Stephen
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DIARRHEA ,DIARRHEA in children ,RESEARCH protocols ,ETIOLOGY of diseases ,VIETNAMESE people ,MEDICAL informatics ,DISEASES - Abstract
Background Shigella spp. are one of the most common causes of paediatric dysentery globally, responsible for a substantial proportion of diarrhoeal disease morbidity and mortality, particularly in industrialising regions. Alarming levels of antimicrobial resistance are now reported in S. flexneri and S. sonnei, hampering treatment options. Little is known, however, about the burden of infection and disease due to Shigella spp. in the community. Methods/Design In order to estimate the incidence of this bacterial infection in the community in Ho Chi Minh City, Vietnam we have designed a longitudinal cohort to follow up approximately 700 children aged 12-60 months for two years with active and passive surveillance for diarrhoeal disease. Children will be seen at 6 month intervals for health checks where blood and stool samples will be collected. Families will also be contacted every two weeks for information on presence of diarrhoea in the child. Upon report of a diarrhoeal disease episode, study nurses will either travel to the family home to perform an evaluation or the family will attend a study hospital at a reduced cost, where a stool sample will also be collected. Case report forms collected at this time will detail information regarding disease history, risk factors and presence of disease in the household. Outcomes will include (i) age-specific incidence of Shigella spp. and other agents of diarrhoeal disease in the community, (ii) risk factors for identified aetiologies, (iii) rates of seroconversion to a host of gastrointestinal pathogens in the first few years of life. Further work regarding the longitudinal immune response to a variety of Shigella antigens, host genetics and candidate vaccine/diagnostic proteins will also be conducted. Discussion This is the largest longitudinal cohort with active surveillance designed specifically to investigate Shigella infection and disease. The study is strengthened by the active surveillance component, which will likely capture a substantial proportion of episodes not normally identified through passive or hospital-based surveillance. It is hoped that information from this study will aid in the design and implementation of Shigella vaccine trials in the future. [ABSTRACT FROM AUTHOR]
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- 2014
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35. A birth cohort study of viral infections in Vietnamese infants and children: study design, methods and characteristics of the cohort.
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Anders, Katherine L., Nguyet Minh Nguyen, Nguyen Thi Van Thuy, Nguyen Trong Hieu, Hoa L. Nguyen, Nguyen Thi Hong Tham, Phan Thi Thanh Ha, Le Bich Lien, Nguyen Van Vinh Chau, and Simmons, Cameron P.
- Abstract
Background: In Ho Chi Minh City, Vietnam, more than one-third of admissions to the two paediatric hospitals are attributable to four infectious syndromes: dengue, diarrhoeal disease, acute respiratory infection, and hand, foot and mouth disease. We have established a large prospective birth cohort study to investigate individual, environmental, virological, and immunological determinants of infection and disease in infants. Specific research questions are focused on the role of maternal antibody in protection against infection in infancy, and the adaptive immune response to vaccination and natural infection. This paper presents the cohort design, methods, and baseline characteristics of the participants enrolled in the first two years. Methods/design: Women are enrolled prior to delivery at one hospital in each of two catchment areas: an urban district in central HCMC, and a mixed urban/rural district in the Mekong Delta 150 km southwest of HCMC. Infants are enrolled within 3 days of birth, and maternal and cord blood samples are collected. Routine blood samples and data on growth, health status and vaccinations are collected from infants at scheduled visits at 4, 9 and 12 months. Clinical data and specimens are collected from infants presenting at a study clinic, or admitted to hospital, with any of the the four infectious syndromes of interest. Discussion: In four years since since the study began in July 2009, >6400 infants have been enrolled, and enrolment is ongoing. Attrition is low: 84% of participants have completed the full 12-month follow-up period. Baseline characteristics of the first 4300 enrollees are presented here. We have demonstrated the feasibility of establishing a large prospective study of infectious diseases in infancy in a resource-limited setting, with minimal loss to follow-up. Our linked socio-demographic, clinical and laboratory data will help elucidate the viral aetiology and epidemiology of common infectious diseases of infancy, and can inform the implementation of existing and future vaccines. This study furthermore provides a platform to which additional endpoints could be added in the future. [ABSTRACT FROM AUTHOR]
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- 2013
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36. Seroprevalence of Antibodies against Human Papillomavirus (HPV) Types 16 and 18 in Four Continents: the International Agency for Research on Cancer HPV Prevalence Surveys.
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Vaccarella, Salvatore, Franceschi, Silvia, Clifford, Gary M., Touzé, Antoine, Hsu, Charles C., de Sanjosé, Silvia, Pham Thi Hoang Anh, Nguyen Trong Hieu, Matos, Elena, Hai Rim Shin, Sukvirach, Sukhon, Thomas, Jaiye O., Boursaghin, Latifa, Gaitan, Julien, Snijders, Peter J. F., Meijer, Chris J. L. M., Muñoz, Nubia, Herrero, Rolando, and Coursaget, Pierre
- Abstract
The article explores the seroprevalence of antibodies against human papillomavirus (HPV) types 16 (HPV16) and 18 (HPV18) in 7,074 women in five-year age groups from 15-19 to 65 and older in eight countries. The seropositivity for women who are HPV16 deoxyribonucleic acid (DNA)-positive was 39.8% and 23.2% for HPV18 DNA-positive. HPV DNA positive status increases the risk of cytologic abnormalities among HPV16 and/or HPV18 (HPV16/18) -seropositive women. There was an association observed between HPV16/18 and HPV DNA prevalence.
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- 2010
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37. Dengue Virus Infections and Maternal Antibody Decay in a Prospective Birth Cohort Study of Vietnamese Infants.
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Tran Nguyen Bich Chau, Nguyen Trong Hieu, Anders, Katherine L., Wolbers, Marcel, Le Bich Lien, Lu Thi Minh Hieu, Tran Tinh Hien, Nguyen Thanh Hung, Farrar, Jeremy, Whitehead, Stephen, and Simmons, Cameron P.
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- *
DENGUE viruses , *IMMUNOGLOBULINS , *COHORT analysis , *INFANT diseases , *DISEASE incidence , *SEROLOGY , *COMMUNICABLE diseases - Abstract
Dengue hemorrhagic fever can occur in primary dengue virus (DENV) infection of infants. The decay of maternally derived DENV immunoglobulin (Ig) G and the incidence of DENV infection were determined in a prospectively studied cohort of 1244 Vietnamese infants. Higher concentrations of total IgG and DENV-reactive IgG were found in cord plasma relative to maternal plasma. Maternally derived DENV-neutralizing and E protein-reactive IgG titers declined to below measurable levels in 190% of infants by 6 months of age. In contrast, IgG reactive with whole DENV virions persisted until 12 months of age in 20% of infants. Serological surveillance identified 10 infants with asymptomatic DENV infection for an incidence of 1.7 cases per 100 person-years. DENV-neutralizing antibodies remained measurable for ⩾1 year after infection. These results suggest that whereas DENV infection in infants is frequently subclinical, there is a window between 4 and 12 months of age where virion-binding but nonneutralizing IgG could facilitate antibody-dependent enhancement. [ABSTRACT FROM AUTHOR]
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- 2009
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38. Dengue in Vietnamese Infants—Results of Infection-Enhancement Assays Correlate with Age-Related Disease Epidemiology, and Cellular Immune Responses Correlate with Disease Severity.
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Tran Nguyen Bich Chau, Nguyen Than Ha Quyen, Tran Thi Thuy, Nguyen Minh Tuan, Dang Minh Hoang, Nguyen Thi Phuong Dung, Le Bich Lien, Nguyen Thien Quy, Nguyen Trong Hieu, Lu Thi Minh Hieu, Tran Tinh Hien, Nguyen Thanh Hung, Farrar, Jeremy, and Simmons, Cameron P.
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DENGUE viruses ,EPIDEMIOLOGY ,IMMUNE response ,VIETNAMESE people ,PHENOTYPES ,CONVALESCENCE ,VIRAL antibodies ,VACCINATION - Abstract
The pathogenesis of severe dengue is not well understood. Maternally derived subneutralizing levels of dengue virus-reactive IgG are postulated to be a critical risk factor for severe dengue during infancy. In this study, we found that, in healthy Vietnamese infants, there was a strong temporal association between the Fc-dependent, dengue virus infection-enhancing activity of neat plasma and the age-related epidemiology of severe dengue. We then postulated that disease severity in infants with primary infections would be associated with a robust immune response, possibly as a consequence of higher viral burdens in vivo. Accordingly, in infants hospitalized with acute dengue, the activation phenotype of peripheral-blood NK cells and CD8
+ andCD4+ T cells correlated with overall disease severity, but HLA-A*1101-restricted NS3133-142 -specific CD8+ T cells were not measurable until early convalescence. Plasma levels of cytokines/chemokines were generally higher in infants with dengue shock syndrome. Collectively, these data support a model of dengue pathogenesis in infants whereby antibody-dependent enhancement of infection explains the age-related case epidemiology and could account for antigen-driven immune activation and its association with disease severity. These results also highlight potential risks in the use of live attenuated dengue vaccines in infants in countries where dengue is endemic. [ABSTRACT FROM AUTHOR]- Published
- 2008
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39. Maternal Antibody and Viral Factors in the Pathogenesis of Dengue Virus in Infants.
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Simmons, Cameron P., Tran Nguyen Bich Chau, Tran Thi Thuy, Nguyen Minh Tuan, Dang Minh Hoang, Nguyen Thanh Thien, Le Bich Lien, Nguyen Thien Quy, Nguyen Trong Hieu, Tran Tinh Hien, McElnea, Catriona, Young, Paul, Whitehead, Steve, Nguyen Thanh Hung, and Farrar, Jeremy
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DENGUE viruses ,VIRAL diseases in children ,MICROBIAL virulence ,PATHOGENIC microorganisms ,ETIOLOGY of diseases ,COMMUNICABLE diseases in children ,ARBOVIRUSES - Abstract
The pathogenesis of dengue in infants is poorly understood. We postulated that dengue severity in infants would be positively associated with markers of viral burden and that maternally derived, neutralizing antidengue antibody would have decayed before the age at which infants with dengue presented to the hospital. In 75 Vietnamese infants with primary dengue, we found significant heterogeneity in viremia and NS1 antigenemia at hospital presentation, and these factors were independent of disease grade or continuous measures of disease severity. Neutralizing antibody titers, predicted in each infant at the time of their illness, suggested that the majority of infants (65%) experienced dengue hemorrhagic fever when the maternally derived neutralizing antibody titer had declined to <1:20. Collectively, these data have important implications for dengue vaccine research because they suggest that viral burden may not solely explain severe dengue in infants and that neutralizing antibody is a reasonable but not absolute marker of protective immunity in infants. [ABSTRACT FROM AUTHOR]
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- 2007
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40. Cervical Infection With Chlamydia trachomatis and Neisseria gonorrhoeae in Women From Ten Areas in Four Continents.
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Franceschi, Silvia, Smith, Jennifer S., Van Den Brule, Adriaan, Herrero, Rolando, Arslan, Annie, Pham-Thi-Hoang Anh, Bosch, F. Xavier, Nguyen-Trong Hieu, Matos, Elena, Posso, Hector, You-Lin Qiao, Hal-Rim Shin, Sukvirach, Sukhon, Thomas, Jaiye O., Snijders, Peter J. F., Munoz, Nubia, and Meijer, Chris J. L. M.
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- 2007
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41. Smoking and human papillomavirus infection: pooled analysis of the International Agency for Research on Cancer HPV Prevalence Surveys.
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Salvatore Vaccarella, Rolando Herrero, Peter J F Snijders, Min Dai, Jaiye O Thomas, Nguyen Trong Hieu, Catterina Ferreccio, Elena Matos, Hector Posso, Silvia de Sanjosé, Hai Rim Shin, Sukhon Sukvirach, Eduardo Lazcano-Ponce, Nubia Muñoz, Chris J L M Meijer, Silvia Franceschi, and the IARC HPV Prevalence Surveys (IHPS) Study Group
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SURVEYS ,SMOKING ,CIGARETTE smokers ,PAPILLOMAVIRUSES - Abstract
Background Smoking increases the risk of squamous-cell carcinoma of the cervix, but it is not clear whether smoking increases the risk of acquisition or persistence of human papillomavirus (HPV) infection. Methods Information on smoking was collected from 10 areas in four continents among population-based, age-stratified random samples of women aged 15 years or older. HPV testing was performed using PCR-based enzyme immunoassay. Unconditional logistic regression was used to estimate odds ratios (OR) and corresponding 95% confidence intervals (CI) of being HPV-positive by smoking habits, adjusted for age and lifetime number of sexual partners. Results Ten thousand five hundred and seventy-seven women (mean age 41.4 years) were included. Among current smokers, the risk of being HPV-positive increased with smoking intensity, after allowing for lifetime number of sexual partners: ORs for Conclusions Our study suggests that current, though not former, smoking is associated with an increased prevalence of HPV, after allowance for sexual covariates. Among current smokers, HPV prevalence increased with smoking intensity, but a clear doseâresponse relationship was exclusively seen among women who declared one lifetime sexual partner. [ABSTRACT FROM AUTHOR]
- Published
- 2008
42. Combination of Hotspot Mutations With Methylation and Fragmentomic Profiles to Enhance Multi-Cancer Early Detection.
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Nguyen THH, Vu GH, Nguyen TT, Nguyen TA, Tran VU, Vu LT, Nguyen GTH, Nguyen ND, Tran TH, Nguyen VTC, Nguyen TD, Nguyen TH, Vo DH, Van TTV, Do TT, Le MP, Huynh LAK, Nguyen DS, Tang HS, Nguyen HN, Phan MD, Giang H, Tu LN, and Tran LS
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- Humans, Female, Male, Retrospective Studies, Middle Aged, Aged, Circulating Tumor DNA genetics, Circulating Tumor DNA blood, Neoplasms genetics, Neoplasms diagnosis, Adult, Early Detection of Cancer methods, DNA Methylation, Mutation, Biomarkers, Tumor genetics
- Abstract
Background: Multi-cancer early detection (MCED) through a single blood test significantly advances cancer diagnosis. However, most MCED tests rely on a single type of biomarkers, leading to limited sensitivity, particularly for early-stage cancers. We previously developed SPOT-MAS, a multimodal ctDNA-based assay analyzing methylation and fragmentomic profiles to detect five common cancers. Despite its potential, SPOT-MAS exhibited moderate sensitivities for early-stage cancers. This study investigated whether integrating hotspot mutations into SPOT-MAS could enhance its detection rates., Method: A targeted amplicon sequencing approach was developed to profile 700 hotspot mutations in cell-free DNA and integrated into the SPOT-MAS assay, creating a single-blood draw workflow. This workflow, namely SPOT-MAS Plus was retrospectively validated in a cohort of 255 non-metastatic cancer patients (breast, colorectal, gastric, liver, and lung) and 304 healthy individuals., Results: Hotspot mutations were detected in 131 of 255 (51.4%) cancer patients, with the highest rates in liver cancer (96.5%), followed by colorectal (59.3%) and lung cancer (53.7%). Lower detection rates were found for cancers with low tumor mutational burden, such as breast (31.3%) and gastric (41.9%) cancers. In contrast, SPOT-MAS demonstrated higher sensitivities for these cancers (51.6% for breast and 62.9% for gastric). The combination of hotspot mutations with SPOT-MAS predictions improved early-stage cancer detection, achieving an overall sensitivity of 78.5% at a specificity of 97.7%. Enhanced sensitivities were observed for colorectal (81.36%) and lung cancer (82.9%)., Conclusion: The integration of genetic and epigenetic alterations into a multimodal assay significantly enhances the early detection of various cancers. Further validation in larger cohorts is necessary to support broader clinical applications., (© 2025 The Author(s). Cancer Medicine published by John Wiley & Sons Ltd.)
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- 2025
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43. Evaluation of a multimodal ctDNA-based assay for detection of aggressive cancers lacking standard screening tests.
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Thien Nguyen CV, Hanh Nguyen TH, Vo DH, Vi Van TT, Huong Nguyen GT, Tran TH, Nguyen TH, Khoa Huynh LA, Nguyen TD, Tran NH, Thi Ha TM, Quynh Le PT, Truong XL, Nguyen HL, Tran UV, Hoang TQ, Nguyen VB, Le VC, Nguyen XC, Phuong Nguyen TM, Nguyen VH, Nhat Tran NT, Quynh Dang TN, Tran MH, Nguyen PN, Dao TH, Phuc Nguyen HT, Tran NT, Phan TV, Nguyen DS, Tang HS, Giang H, Phan MD, Nguyen HN, and Tran LS
- Abstract
Aim: Cancers lacking standard screening (LSS) options account for approximately 70% of cancer-related deaths due to late-stage diagnosis. Circulating tumor DNA (ctDNA) is a promising biomarker for multi-cancer early detection. We previously developed SPOT-MAS, a multimodal ctDNA-based assay analyzing methylation and fragmentomic profiles, effective in detecting common cancers (breast, colorectal, liver, lung and gastric). This study extends the analysis to five LSS cancers: endometrial, esophageal, head and neck, ovarian and pancreatic. Methods: SPOT-MAS was applied to profile cfDNA methylation and fragmentomic patterns in 739 healthy individuals and 135 LSS cancer patients. Results: We identified 347 differentially methylated regions and observed genome-wide hypomethylation across all five LSS cancers. Esophageal and head and neck cancers showed an enrichment of short cfDNA fragments (<150 bp). Eleven 4-mer end motifs were consistently altered in cfDNA fragments across all LSS cancers. Many significant signatures were consistent with previous observations in common cancers. Notably, SPOT-MAS achieved 96.2% specificity and 74.8% overall sensitivity, with a lower sensitivity of 60.7% in early-stage cancers. Conclusion: This proof-of-concept study demonstrates that SPOT-MAS a non-invasive test trained on five common cancer types, could detect a number of LSS cancer cases, potentially complementing existing screening programs.
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- 2024
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44. Multimodal analysis of methylomics and fragmentomics in plasma cell-free DNA for multi-cancer early detection and localization.
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Nguyen VTC, Nguyen TH, Doan NNT, Pham TMQ, Nguyen GTH, Nguyen TD, Tran TTT, Vo DL, Phan TH, Jasmine TX, Nguyen VC, Nguyen HT, Nguyen TV, Nguyen THH, Huynh LAK, Tran TH, Dang QT, Doan TN, Tran AM, Nguyen VH, Nguyen VTA, Ho LMQ, Tran QD, Pham TTT, Ho TD, Nguyen BT, Nguyen TNV, Nguyen TD, Phu DTB, Phan BHH, Vo TL, Nai THT, Tran TT, Truong MH, Tran NC, Le TK, Tran THT, Duong ML, Bach HPT, Kim VV, Pham TA, Tran DH, Le TNA, Pham TVN, Le MT, Vo DH, Tran TMT, Nguyen MN, Van TTV, Nguyen AN, Tran TT, Tran VU, Le MP, Do TT, Phan TV, Nguyen HL, Nguyen DS, Cao VT, Do TT, Truong DK, Tang HS, Giang H, Nguyen HN, Phan MD, and Tran LS
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- Humans, Biomarkers, Tumor blood, Biomarkers, Tumor genetics, Cell-Free Nucleic Acids blood, Cell-Free Nucleic Acids genetics, DNA, Neoplasm blood, DNA, Neoplasm genetics, Liver Neoplasms, Circulating Tumor DNA blood, Circulating Tumor DNA genetics, Early Detection of Cancer methods, Neoplasms blood, Neoplasms diagnosis, Neoplasms genetics
- Abstract
Despite their promise, circulating tumor DNA (ctDNA)-based assays for multi-cancer early detection face challenges in test performance, due mostly to the limited abundance of ctDNA and its inherent variability. To address these challenges, published assays to date demanded a very high-depth sequencing, resulting in an elevated price of test. Herein, we developed a multimodal assay called SPOT-MAS (screening for the presence of tumor by methylation and size) to simultaneously profile methylomics, fragmentomics, copy number, and end motifs in a single workflow using targeted and shallow genome-wide sequencing (~0.55×) of cell-free DNA. We applied SPOT-MAS to 738 non-metastatic patients with breast, colorectal, gastric, lung, and liver cancer, and 1550 healthy controls. We then employed machine learning to extract multiple cancer and tissue-specific signatures for detecting and locating cancer. SPOT-MAS successfully detected the five cancer types with a sensitivity of 72.4% at 97.0% specificity. The sensitivities for detecting early-stage cancers were 73.9% and 62.3% for stages I and II, respectively, increasing to 88.3% for non-metastatic stage IIIA. For tumor-of-origin, our assay achieved an accuracy of 0.7. Our study demonstrates comparable performance to other ctDNA-based assays while requiring significantly lower sequencing depth, making it economically feasible for population-wide screening., Competing Interests: VN VTCN is affiliated with Gene Solutions. The author has no other competing interests to declare, TN HTN is affiliated with Gene Solutions. The author has no other competing interests to declare, ND NNTD is affiliated with Gene Solutions. The author has no other competing interests to declare, TP TMQP is affiliated with Gene Solutions. The author has no other competing interests to declare, GN GTHN is affiliated with Gene Solutions. The author has no other competing interests to declare, TN TDN is affiliated with Gene Solutions. The author has no other competing interests to declare, TT TTTT is affiliated with Gene Solutions. The author has no other competing interests to declare, DV, TP, TJ, VN, HN, TN, QD, TD, AT, VN, VN, LH, QT, TP, TH, BN, TN, TN, DP, BP, TV, TN, TT, MT, NT, TL, TT, MD, HB, VK, TP, DT, TL, TP, ML, VC, TD No competing interests declared, TN THHN is affiliated with Gene Solutions. The author has no other competing interests to declare, LH LAKH is affiliated with Gene Solutions. The author has no other competing interests to declare, TT THT is affiliated with Gene Solutions. The author has no other competing interests to declare, DV DHV is affiliated with Gene Solutions. The author has no other competing interests to declare, TT TMTT is affiliated with Gene Solutions. The author has no other competing interests to declare, MN MNN is affiliated with Gene Solutions. The author has no other competing interests to declare, TV TTVV is affiliated with Gene Solutions. The author has no other competing interests to declare, AN ANN is affiliated with Gene Solutions. The author has no other competing interests to declare, TT TTT is affiliated with Gene Solutions. The author has no other competing interests to declare, VT VUT is affiliated with Gene Solutions. The author has no other competing interests to declare, ML MPL is affiliated with Gene Solutions. The author has no other competing interests to declare, TD TTD is affiliated with Gene Solutions. The author has no other competing interests to declare, TP TVP is affiliated with Gene Solutions. The author has no other competing interests to declare, HN HDN is affiliated with Gene Solutions. The author has no other competing interests to declare, DN DSN holds equity in Gene Solutions.DSN is affiliated with Gene Solutions. The author has no other competing interests to declare, DT DKT is affiliated with Gene Solutions. The author has no other competing interests to declare, HT HST is affiliated with Gene Solutions. The author has no other competing interests to declare, HG HG holds equity in Gene Solutions. The funder Gene Solutions provided support in the form of salaries for HG who is inventor on the patent application (USPTO 17930705).HG is affiliated with Gene Solutions. The author has no other competing interests to declare, HN HNN holds equity in Gene Solutions. The funder Gene Solutions provided support in the form of salaries for HNN who is inventor on the patent application (USPTO 17930705).HNN is affiliated with Gene Solutions. The author has no other competing interests to declare, MP MDP holds equity in Gene Solutions. The funder Gene Solutions provided support in the form of salaries for MDP who is inventor on the patent application (USPTO 17930705).MDP is affiliated with Gene Solutions. The author has no other competing interests to declare, LT LST holds equity in Gene Solutions. The funder Gene Solutions provided support in the form of salaries for LST who is inventor on the patent application (USPTO 17930705).LST is affiliated with Gene Solutions. The author has no other competing interests to declare, (© 2023, Nguyen, Nguyen et al.)
- Published
- 2023
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45. Multimodal analysis of genome-wide methylation, copy number aberrations, and end motif signatures enhances detection of early-stage breast cancer.
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Pham TMQ, Phan TH, Jasmine TX, Tran TTT, Huynh LAK, Vo TL, Nai THT, Tran TT, Truong MH, Tran NC, Nguyen VTC, Nguyen TH, Nguyen THH, Le NDK, Nguyen TD, Nguyen DS, Truong DK, Do TTT, Phan MD, Giang H, Nguyen HN, and Tran LS
- Abstract
Introduction: Breast cancer causes the most cancer-related death in women and is the costliest cancer in the US regarding medical service and prescription drug expenses. Breast cancer screening is recommended by health authorities in the US, but current screening efforts are often compromised by high false positive rates. Liquid biopsy based on circulating tumor DNA (ctDNA) has emerged as a potential approach to screen for cancer. However, the detection of breast cancer, particularly in early stages, is challenging due to the low amount of ctDNA and heterogeneity of molecular subtypes., Methods: Here, we employed a multimodal approach, namely Screen for the Presence of Tumor by DNA Methylation and Size (SPOT-MAS), to simultaneously analyze multiple signatures of cell free DNA (cfDNA) in plasma samples of 239 nonmetastatic breast cancer patients and 278 healthy subjects., Results: We identified distinct profiles of genome-wide methylation changes (GWM), copy number alterations (CNA), and 4-nucleotide oligomer (4-mer) end motifs (EM) in cfDNA of breast cancer patients. We further used all three signatures to construct a multi-featured machine learning model and showed that the combination model outperformed base models built from individual features, achieving an AUC of 0.91 (95% CI: 0.87-0.95), a sensitivity of 65% at 96% specificity., Discussion: Our findings showed that a multimodal liquid biopsy assay based on analysis of cfDNA methylation, CNA and EM could enhance the accuracy for the detection of early- stage breast cancer., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Pham, Phan, Jasmine, Tran, Huynh, Vo, Nai, Tran, Truong, Tran, Nguyen, Nguyen, Nguyen, Le, Nguyen, Nguyen, Truong, Do, Phan, Giang, Nguyen and Tran.)
- Published
- 2023
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46. The transfer and decay of maternal antibody against Shigella sonnei in a longitudinal cohort of Vietnamese infants.
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Thompson CN, Le TP, Anders KL, Nguyen TH, Lu LV, Nguyen VV, Vu TD, Nguyen NM, Tran TH, Ha TT, Tran VT, Pham VM, Tran do HN, Le TQ, Saul A, Martin LB, Podda A, Gerke C, Thwaites G, Simmons CP, and Baker S
- Subjects
- Antibodies, Bacterial chemistry, Enzyme-Linked Immunosorbent Assay, Female, Fetal Blood immunology, Half-Life, Humans, Immunoglobulin G chemistry, Infant, Infant, Newborn, Longitudinal Studies, Male, O Antigens isolation & purification, Seroconversion, Vietnam, Antibodies, Bacterial blood, Immunity, Maternally-Acquired, Immunoglobulin G blood, Shigella sonnei
- Abstract
Background: Shigella sonnei is an emergent and major diarrheal pathogen for which there is currently no vaccine. We aimed to quantify duration of maternal antibody against S. sonnei and investigate transplacental IgG transfer in a birth cohort in southern Vietnam., Methods and Results: Over 500-paired maternal/infant plasma samples were evaluated for presence of anti-S. sonnei-O IgG and IgM. Longitudinal plasma samples allowed for the estimation of the median half-life of maternal anti-S. sonnei-O IgG, which was 43 days (95% confidence interval: 41-45 days). Additionally, half of infants lacked a detectable titer by 19 weeks of age. Lower cord titers were associated with greater increases in S. sonnei IgG over the first year of life, and the incidence of S. sonnei seroconversion was estimated to be 4/100 infant years. Maternal IgG titer, the ratio of antibody transfer, the season of birth and gestational age were significantly associated with cord titer., Conclusions: Maternal anti-S. sonnei-O IgG is efficiently transferred across the placenta and anti-S. sonnei-O maternal IgG declines rapidly after birth and is undetectable after 5 months in the majority of children. Preterm neonates and children born to mothers with low IgG titers have lower cord titers and therefore may be at greater risk of seroconversion in infancy., (Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2016
- Full Text
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47. Human papillomavirus infection among women in South and North Vietnam.
- Author
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Pham TH, Nguyen TH, Herrero R, Vaccarella S, Smith JS, Nguyen Thuy TT, Nguyen HN, Nguyen BD, Ashley R, Snijders PJ, Meijer CJ, Muñoz N, Parkin DM, and Franceschi S
- Subjects
- Adolescent, Adult, Age Factors, Aged, Female, Humans, Incidence, Middle Aged, Papillomaviridae classification, Papillomaviridae genetics, Papillomaviridae isolation & purification, Papillomavirus Infections virology, Parity, Prevalence, Risk Factors, Sexual Behavior, Uterine Cervical Neoplasms virology, Vietnam epidemiology, Papillomavirus Infections epidemiology, Uterine Cervical Neoplasms epidemiology
- Abstract
The incidence rate of invasive cervical carcinoma (ICC) is 4-fold higher in Ho Chi Minh City, in the South of Vietnam, than in Hanoi, in the North. Thus, we explored the prevalence of and the risk factors for human papillomavirus (HPV) infection in these 2 areas. A population-based random sample of married women aged 15-69 years were interviewed and had a gynaecological examination in the urban district of Ho Chi Minh City and in a peri-urban district in Hanoi. HPV DNA detection was performed using a GP5+/6+ primer-mediated PCR enzyme immunoassay. A total of 922 women from Ho Chi Minh and 994 from Hanoi, for whom a Pap smear and HPV-status were available, were evaluated. HPV DNA was detected among 10.9% of women in Ho Chi Minh City and 2.0% in Hanoi (age standardized prevalence, world standard population: 10.6% and 2.3%, respectively). In the 2 areas combined, 30 different HPV types were found, the most common being HPV 16 (in 14 single and 18 multiple infections), followed by HPV 58, 18 and 56. A peak of HPV DNA detection in women younger than age 25 was found in Ho Chi Minh City (22.3%) but not in Hanoi. Major risk factors for HPV DNA detection were indicators of sexual habits, most notably the presence of HSV-2 antibodies, nulliparity and the current use of oral contraceptives. Women in Hanoi showed the lowest HPV prevalence ever reported so far, suggesting that HPV has not spread widely in this population. As expected, HPV prevalence in a population seemed to be closely correlated with ICC incidence rates., (Copyright 2003 Wiley-Liss, Inc.)
- Published
- 2003
- Full Text
- View/download PDF
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