1. Quiescence unveils a novel mutational force in fission yeast
- Author
-
Serge Gangloff, Guillaume Achaz, Stefania Francesconi, Adrien Villain, Samia Miled, Claire Denis, Benoit Arcangioli, Génétique des génomes - Genetics of Genomes (UMR 3525), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Dynamique du Génome - Dynamics of the genome, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Atelier de BioInformatique (ABI), Université Pierre et Marie Curie - Paris 6 (UPMC), Institut Pasteur [Paris] (IP), Conseil national de la recherche scientifique du Liban (CNRS Liban), National Council for Scientific Research [Lebanon] (CNRS-L), Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), This work was supported by the grants ANR-13-BSV8-0018 and ANR-12-BSV7-0012 Demochips from the Agence Nationale de la Recherche (France) to BA and GA, respectively., ANR-13-BSV8-0018,quiescenceDNA,stabilité génétique en quiescence(2013), ANR-12-BSV7-0012,demochips,Inférence de l'histoire démographique à partie des grands jeux de données de polymorphisme A.D.N.(2012), Génétique des génomes, UMR 3525, Centre National de la Recherche Scientifique (CNRS), Génétique des génomes (GG), Institut Pasteur [Paris], Département de Génomes et Génétique - Department of Genomes and Genetics, Institut Pasteur [Paris] (IP)-Université Paris Cité (UPCité), Muséum national d'Histoire naturelle (MNHN)-Université Pierre et Marie Curie - Paris 6 (UPMC)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), Centre interdisciplinaire de recherche en biologie (CIRB), Labex MemoLife, École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Collège de France (CdF (institution))-Ecole Superieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI Paris), Université Paris sciences et lettres (PSL)-École normale supérieure - Paris (ENS-PSL), and Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Time Factors ,MESH: Mutation ,QH301-705.5 ,Science ,MESH: Selection, Genetic ,[SDV]Life Sciences [q-bio] ,stem cells ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,Schizosaccharomyces ,evolution ,genomics ,Selection, Genetic ,Biology (General) ,postmitotic ,evolutionary biology ,MESH: Time Factors ,molecular clock ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,mutations ,MESH: Biological Variation, Population ,MESH: Schizosaccharomyces ,Biological Variation, Population ,Genomics and Evolutionary Biology ,Mutation ,Medicine ,Research Article ,S. pombe - Abstract
International audience; To maintain life across a fluctuating environment, cells alternate between phases of cell division and quiescence. During cell division, the spontaneous mutation rate is expressed as the probability of mutations per generation (Luria and Delbrü ck, 1943; Lea and Coulson, 1949), whereas during quiescence it will be expressed per unit of time. In this study, we report that during quiescence, the unicellular haploid fission yeast accumulates mutations as a linear function of time. The novel mutational landscape of quiescence is characterized by insertion/deletion (indels) accumulating as fast as single nucleotide variants (SNVs), and elevated amounts of deletions. When we extended the study to 3 months of quiescence, we confirmed the replication-independent mutational spectrum at the whole-genome level of a clonally aged population and uncovered phenotypic variations that subject the cells to natural selection. Thus, our results support the idea that genomes continuously evolve under two alternating phases that will impact on their size and composition.
- Published
- 2017
- Full Text
- View/download PDF