140 results on '"Lindell D"'
Search Results
2. Formation of Chromium Nitride and Intragranular Austenite in a Super Duplex Stainless Steel
- Author
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Holländer Pettersson, N., Lindell, D., Lindberg, F., and Borgenstam, A.
- Published
- 2019
- Full Text
- View/download PDF
3. Can Fast Early Rates Reconcile Molecular Dates with the Cambrian Explosion?
- Author
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Bromham, Lindell D. and Hendy, Michael D.
- Published
- 2000
4. Inhaled vs subcutaneous effects of a dual IL-4/IL-13 antagonist in a monkey model of asthma
- Author
-
Tomkinson, A., Tepper, J., Morton, M., Bowden, A., Stevens, L., Harris, P., Lindell, D., Fitch, N., Gundel, R., and Getz, E. B.
- Published
- 2010
- Full Text
- View/download PDF
5. Scoliosis as the first sign of a cystic spinal cord lesion
- Author
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Samuelsson, L. and Lindell, D.
- Published
- 1995
- Full Text
- View/download PDF
6. IL-4 induced leucocyte trafficking in cynomolgus monkeys: correlation with expression of adhesion molecules and chemokine generation
- Author
-
GUNDEL, R., LINDELL, D., HARRIS, P., FOURNEL, M., JESMOK, G., and GERRITSEN, M. E.
- Published
- 1996
7. TOLERANCE AND EFFICACY OF OMNISCAN (GADODIAMIDE INJECTION) IN MR IMAGING OF THE CENTRAL NERVOUS SYSTEM
- Author
-
Ekholm, S., Jonsson, E., Sandvik, L., Fagerlund, M., Holtås, S., Isberg, B., Lindell, D., Lindén, B., Sjöberg, S., Thuomas, K.-Å., and Tollesson, P. O.
- Published
- 1996
8. Characterization of Native Oxide and Passive Film on Austenite/Ferrite Phases of Duplex Stainless Steel Using Synchrotron HAXPEEM.
- Author
-
Långberg, M., Örnek, C., Zhang, F., Cheng, J., Liu, M., Grånäs, E., Wiemann, C., Gloskovskii, A., Matveyev, Y., Kulkarni, S., Noei, H., Keller, T. F., Lindell, D., Kivisäkk, U., Lundgren, E., Stierle, A., and Pan, J.
- Subjects
DUPLEX stainless steel ,OXIDE coating ,CHROMIUM oxide ,AUSTENITE ,FERRITES ,BACKSCATTERING ,ELECTRON backscattering ,SYNCHROTRONS - Abstract
A new measurement protocol was used for microscopic chemical analysis of surface oxide films with lateral resolution of 1 μm. The native air-formed oxide and an anodic passive film on austenite and ferrite phases of a 25Cr-7Ni super duplex stainless steel were investigated using synchrotron hard X-ray photoemission electron microscopy (HAXPEEM). Pre-deposited Pt-markers, in combination with electron backscattering diffraction mapping (EBSD), allowed analysis of the native oxide on individual grains of the two phases and the passive film formed on the same area after electrochemical polarization of the sample. The results showed a certain difference in the composition of the surface films between the two phases. For the grains with (001) crystallographic face // sample surface, the native oxide film on the ferrite contained more Cr oxide than the austenite. Anodic polarization up to 1000 mV/
Ag/AgCl in 1M NaCl solution at room temperature resulted in a growth of the Cr- and Fe-oxides, diminish of Cr-hydroxide, and an increased proportion of Fe3+ species. [ABSTRACT FROM AUTHOR]- Published
- 2019
- Full Text
- View/download PDF
9. Exploring the prokaryotic virosphere
- Author
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Comeau, A. M., Hatfull, G.F., Krisch, H.M., Lindell, D., Mann, N.H., Prangishvili, D., Laboratoire de microbiologie et génétique moléculaires (LMGM), Centre de Biologie Intégrative (CBI), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), and Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2008
10. Differential regulation of ssb genes in the nitrogen-fixing cyanobacterium, Anabaena sp. strain PCC71201.
- Author
-
Kirti, Anurag, Kumar, Arvind, Rajaram, Hema, and Lindell, D.
- Subjects
ANABAENA ,CYANOBACTERIA ,GENETIC regulation ,DNA-binding proteins ,OPERONS ,ESCHERICHIA coli ,NITROGEN-fixing microorganisms - Abstract
Anabaena sp. PCC7120 possesses three genes coding for single-stranded DNA-binding ( SSB) protein, of which ssb1 was a single gene, and ssb2 and ssb3 are the first genes of their corresponding operons. Regulation of the truncated ssb genes, ssb1 ( alr0088) and ssb2 ( alr7559), was unaffected by N-status of growth. They were negatively regulated by the SOS-response regulatory protein LexA, as indicated by the (i) binding of Anabaena LexA to the LexA box of regulatory regions of ssb1 and ssb2, and (ii) decreased expression of the downstream gfp reporter gene in Escherichia coli upon co-expression of LexA. However, the full-length ssb gene, ssb3 ( all4779), was regulated by the availability of Fe
2+ and combined nitrogen, as indicated by (i) increase in the levels of SSB3 protein on Fe2+ -depletion and decrease under Fe2+ -excess conditions, and (ii) 1.5- to 1.6-fold decrease in activity under nitrogen-fixing conditions compared to nitrogen-supplemented conditions. The requirement of Fe2+ as a co-factor for repression by FurA and the increase in levels of FurA under nitrogen-deficient conditions in Anabaena (Lopez-Gomollon et al. 2007) indicated a possible regulation of ssb3 by FurA. This was substantiated by (i) the binding of FurA to the regulatory region of ssb3, (ii) repression of the expression of the downstream gfp reporter gene in E. coli upon co-expression of FurA, and (iii) negative regulation of ssb3 promoter activity by the upstream AT-rich region in Anabaena. This is the first report on possible role of FurA, an important protein for iron homeostasis, in DNA repair of cyanobacteria. [ABSTRACT FROM AUTHOR]- Published
- 2017
- Full Text
- View/download PDF
11. Rickettsial endosymbiont in the 'early-diverging' streptophyte green alga Mesostigma viride.
- Author
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Yang, Ashley, Narechania, Apurva, Kim, Eunsoo, and Lindell, D.
- Subjects
RICKETTSIALES ,BACTERIA phylogeny ,GENETIC transcription ,ENDOSYMBIOSIS ,AXENIC cultures ,TRANSMISSION electron microscopy - Abstract
A bacterial endosymbiont was unexpectedly found in the 'axenic' culture strain of the streptophyte green alga Mesostigma viride ( NIES-995). Phylogenetic analyses based on 16S rRNA gene sequences showed that the symbiont belongs to the order Rickettsiales, specifically to the recently designated clade ' Candidatus Megaira,' which is closely related to the well-known Rickettsia clade. Rickettsiales bacteria of the ' Ca. Megaira' clade are found in a taxonomically diverse array of eukaryotic hosts, including chlorophycean green algae, several ciliate species, and invertebrates such as Hydra. Transmission electron microscopy, fluorescence in situ hybridi-zation, and SYBR Green I staining experiments revealed that the endosymbiont of M. viride NIES-995 is rod shaped, typically occurs in clusters, and is surrounded by a halo-like structure, presumably formed by secretory substances from the bacterium. Two additional M. viride strains ( NIES-296 and NIES-475), but not SAG50-1, were found to house the rickettsial endosymbiont. Analyses of strain NIES-995 transcriptome data indicated the presence of at least 91 transcriptionally active genes of symbiont origins. These include genes for surface proteins (e.g., rOmpB) that are known to play key roles in bacterial attachment onto host eukaryotes in related Rickettsia species. The assembled M. viride transcriptome includes transcripts that code for a suite of predicted algal-derived proteins, such as Ku70, WASH, SCAR, and CDC42, which may be important in the formation of the algal-rickettsial association. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
12. Crystallographic effects in corrosion of austenitic stainless steel 316L.
- Author
-
Lindell, D. and Pettersson, R.
- Subjects
- *
CORROSION & anti-corrosives , *STAINLESS steel , *CRYSTALLOGRAPHY , *LASER microscopy , *ANISOTROPY - Abstract
Electron backscatter diffraction and confocal laser microscopy have been used to quantify the degree of crystallographic anisotropy during corrosion of AISI 316L in two test solutions. Corrosion in 30 vol% H2SO4 sulphuric acid shows pronounced crystallographic anisotropy in which the corrosion rate increases in the order {111} < {110} ≲ {100}. The ratio between the slowest corroding {111} and the fasting corroding {100} surfaces is about 3. Pitting corrosion in a solution of FeCl3 and AlCl3 in ethanol/glycerol agrees with other reported observations that high-atomic density surfaces {111} and {100} are less prone to pit nucleation, however the effect was relative small. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
13. An association network analysis among microeukaryotes and bacterioplankton reveals algal bloom dynamics.
- Author
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Tan, Shangjin, Zhou, Jin, Zhu, Xiaoshan, Yu, Shichen, Zhan, Wugen, Wang, Bo, Cai, Zhonghua, and Lindell, D.
- Subjects
EUKARYOTES ,BACTERIOPLANKTON ,ALGAL blooms ,RESTRICTION fragment length polymorphisms ,RIBOSOMAL RNA ,DINOFLAGELLATES - Abstract
Algal blooms are a worldwide phenomenon and the biological interactions that underlie their regulation are only just beginning to be understood. It is established that algal microorganisms associate with many other ubiquitous, oceanic organisms, but the interactions that lead to the dynamics of bloom formation are currently unknown. To address this gap, we used network approaches to investigate the association patterns among microeukaryotes and bacterioplankton in response to a natural Scrippsiella trochoidea bloom. This is the first study to apply network approaches to bloom dynamics. To this end, terminal restriction fragment (T-RF) length polymorphism analysis showed dramatic changes in community compositions of microeukaryotes and bacterioplankton over the blooming period. A variance ratio test revealed significant positive overall associations both within and between microeukaryotic and bacterioplankton communities. An association network generated from significant correlations between T-RFs revealed that S. trochoidea had few connections to other microeukaryotes and bacterioplankton and was placed on the edge. This lack of connectivity allowed for the S. trochoidea sub-network to break off from the overall network. These results allowed us to propose a conceptual model for explaining how changes in microbial associations regulate the dynamics of an algal bloom. In addition, key T-RFs were screened by principal components analysis, correlation coefficients, and network analysis. Dominant T-RFs were then identified through 18S and 16S rRNA gene clone libraries. Results showed that microeukaryotes clustered predominantly with Dinophyceae and Perkinsea while the majority of bacterioplankton identified were Alphaproteobacteria, Gammaproteobacteria, and Bacteroidetes. The ecologi-cal roles of both were discussed in the context of these findings. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
14. Phylogeny and toxicology of Lyngbya wollei (Cyanobacteria, Oscillatoriales) from north-eastern Australia, with a description of Microseira gen. nov.
- Author
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McGregor, Glenn B., Sendall, Barbara C., and Lindell, D.
- Subjects
ALGAE ,PHYLOGENY ,TOXIC algae ,LYNGBYA ,ALGAL populations ,CYANOBACTERIAL toxins ,MICROORGANISM morphology - Abstract
Three populations of the freshwater filamentous cyanobacterium Lyngbya wollei (Farlow ex Gomont) Speziale and Dyck have been putatively identified from north-eastern Australia and found to produce the potent cyanotoxin cylindrospermopsin ( CYN) and its analog deoxy-cylindrospermopsin (deoxy- CYN). We investigated the phylogeny and toxicology of strains and mats isolated from two of these populations using a combination of molecular and morphological techniques. Morphologically the strains corresponded to the type description, however, the frequency of false-branching was low, and variable over time. Strains and mat samples from both sites were positive for the cyrF and cyrJ genes associated with CYN biosynthesis. Phylogenetic analysis of these genes from Australian L. wollei sequences and comparable cyanobacterial sequences revealed that the genes in L. wollei were more closely related to homologous genes in Oscillatoria sp. PCC 6506 than to homologs in Nostocalean CYN-producers. These data suggest a common evolutionary origin of CYN biosynthesis in L. wollei and Oscillatoria. In both the 16S rRNA and nifH phylogenies, the Australian L. wollei strains formed well-supported clades with United States L. wollei (= Plectonema wollei) strains. Pair-wise sequence similarities within the 16S rRNA clade containing all eleven L. wollei strains were high, ranging from 97% to 100%. This group was distantly related (<92% nucleotide similarity) to other taxa within the group previously considered under the genus Lyngbya sensu lato (C. Agardh ex Gomont). Collectively, these results suggest that this toxigenic group is evolutionarily distinct and sufficiently distant as to be considered a separate genus, which we have described as Microseira gen. nov. and hence transfer to it the type M. wollei comb. nov. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
15. Latent virus-like infections are present in a diverse range of Symbiodinium spp. (Dinophyta).
- Author
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Lawrence, Scott A., Wilson, William H., Davy, Joanne E., Davy, Simon K., and Lindell, D.
- Subjects
LATENT infection ,SYMBIODINIUM ,EPIDEMICS ,SYMBIOSIS ,MUTUALISM (Biology) ,FLOW cytometry - Abstract
Coral reefs are increasingly threatened by disease outbreaks, which affect the coral animal and/or its algal symbionts ( Symbiodinium spp.) and can cause mass mortalities. Currently around half of the recognized coral diseases have unknown causative agents. While many of the diseases are thought to be bacterial in origin, there is growing evidence that viruses may play a role. In particular, it appears that viruses may infect the algal symbionts, causing breakdown of the coral-algal mutualism. In this study, we screened a wide range of Symbiodinium cultures in vitro for the presence of latent viral infections. Using flow cytometry and electron microscopy, we found that many types of Symbiodinium apparently harbor such infections, and that the type of putative virus varied within and among host types. Furthermore, the putative viral infections could be induced via abiotic stress and cause host cell lysis and population decline. If similar processes occur in Symbiodinium cells in hospite, they may provide an explanation for some of the diseases affecting corals and other organisms forming symbioses with these algae. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
16. Salt tolerance and polyphyly in the cyanobacterium Chroococcidiopsis ( Pleurocapsales).
- Author
-
Cumbers, John, Rothschild, Lynn J., and Lindell, D.
- Subjects
CYANOBACTERIA ,DEHYDRATION ,SALINE waters ,CELL division ,PHENOTYPES ,HABITATS ,BACTERIA morphology - Abstract
Chroococcidiopsis Geitler ( Geitler 1933) is a genus of cyanobacteria containing desiccation and radiation resistant strains. Members of the genus live in habitats ranging from hot and cold deserts to fresh and saltwater environments. Morphology and cell division pattern have historically been used to define the genus. To better understand the evolution and ability of the Chroococcidiopsis genus to survive in diverse environments we investigated how salt tolerance varies among 15 strains previously isolated from different locations, and if salt tolerant strains are monophyletic to those isolated from freshwater and land environments. Four markers were sequenced from these 15 strains, the 16S r RNA, rbcL, desC1, and gltX genes. Phylogenetic trees were generated which identified a distinct clade of salt-tolerant strains. This study demonstrates that the genus is polyphyletic based on saltwater and freshwater phenotypes. To understand the resistance to salt in more details, the strains were grown on a range of sea salt concentrations which demonstrated that the freshwater strains were salt-intolerant whilst the saltwater strains required salt for growth. This study shows an increased resolution of the phylogeny of Chroococcidiopsis and provides further evidence that the genus is polyphyletic and should be reclassified to improve clarity in the literature. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
17. Photosynthetic characteristics of two Cylindrospermopsis raciborskii strains differing in their toxicity.
- Author
-
Pierangelini, Mattia, Stojkovic, Slobodanka, Orr, Philip T., Beardall, John, and Lindell, D.
- Subjects
PHYCOBILISOMES ,CYANOBACTERIA ,PHOTONS ,PHOTOSYNTHESIS ,TOXICITY testing - Abstract
We studied the growth and photosynthetic characteristics of a toxic ( CS506) and a nontoxic strain ( CS509) of the bloom-forming cyanobacterium Cylindrospermopsis raciborskii grown under identical experimental conditions. When exposed to light-saturating growth conditions (100 μmol photons · m
−2 · s−1 ), values for maximal photosynthetic capacity (Pmax ) and maximum quantum yield (Fv /Fm ) indicated that both strains had an equal ability to process captured photons and deliver them to PSII reaction centers. However, CS506 grew faster than CS509. This was consistent with its higher light requirement for saturation of photosynthesis (Ik ). Greater shade tolerance of CS509 was indicated by its higher ability to harvest light (α), lower photosynthetic light compensation point (Ic ), and higher chlorophyll a to biovolume ratio. Strain-specific differences were found in relation to non-photochemical quenching, effective absorption cross-sectional area of PSIIα-centers (σ PSIIα), and the antenna connectivity parameter of PSIIα (Jcon PSIIα). These findings highlighted differences in the transfer of excitation from phycobilisome/ PSII to PSI, on the dependence on different pigments for light harvesting and on the functioning of the PSII reaction centers between the two strains. The results of this study showed that both performance and composition of the photosynthetic apparatus are different between these strains, though with only two strains examined we cannot attribute the performance of strain 506 to its ability to produce cylindrospermopsins. The emphasis on a strain-specific light adaptation/acclimation is crucial to our understanding of how different light conditions (both quantity and quality) can trigger the occurrence of different C. raciborskii strains and control their competition and/or dominance in natural ecosystems. [ABSTRACT FROM AUTHOR]- Published
- 2014
- Full Text
- View/download PDF
18. Novel approach for the development of axenic microalgal cultures from environmental samples.
- Author
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Cho, Dae‐Hyun, Ramanan, Rishiram, Kim, Byung‐Hyuk, Lee, Jimin, Kim, Sora, Yoo, Chan, Choi, Gang‐Guk, Oh, Hee‐Mock, Kim, Hee‐Sik, and Lindell, D.
- Subjects
AXENIC cultures ,ALGAL blooms ,MICROALGAE ,SONICATION ,FLUORESCENCE ,FLOW cytometry ,CHLORELLA vulgaris - Abstract
We demonstrated a comprehensive approach for development of axenic cultures of microalgae from environmental samples. A combination of ultrasonication, fluorescence-activated cell sorting ( FACS), and micropicking was used to isolate axenic cultures of Chlorella vulgaris Beyerinck ( Beijerinck) and Chlorella sorokiniana Shihira & R.W. Krauss from swine wastewater, and Scenedesmus sp. YC001 from an open pond. Ultrasonication dispersed microorganisms attached to microalgae and reduced the bacterial population by 70%, and when followed by cell sorting yielded 99.5% pure microalgal strains. The strains were rendered axenic by the novel method of micropicking and were tested for purity in both solid and liquid media under different trophic states. Denaturing gradient gel electrophoresis ( DGGE) of 16S rRNA gene confirmed the absence of unculturable bacteria, whereas fluorescence microscopy and scanning electron microscopy ( SEM) further confirmed the axenicity. This is the most comprehensive approach developed to date for obtaining axenic microalgal strains without the use of antibiotics and repetitive subculturing. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
19. Characterization of a novel collagen-like protein TrpA in the cyanobacterium Trichodesmium erythraeum IMS101.
- Author
-
Price, Simara, Anandan, Shivanthi, and Lindell, D.
- Subjects
COLLAGEN ,PROTEINS ,TRP channels ,CYANOBACTERIA ,IMMUNOFLUORESCENCE ,TRICHOMES - Abstract
The collagen protein family is diverse and its membership is continually expanding as new collagen-like molecules are identified. Identification of collagen in unicellular eukaryotes and prokaryotes has opened discussion on the function of these collagens and their role in the emergence of multicellularity. The previous identification of a collagen gene in Trichodesmium erythraeum raises the question of function of this structural protein in a prokaryote. In this study, we show that this gene is expressed during all phases of growth, indicating that it may be required for all phases of growth. Using immunofluorescence techniques, we demonstrate that the collagen-like protein is localized in a specific manner between adjacent cells along the trichome of T. erythraeum. Trichomes treated with the enzyme collagenase exhibited fragmentation, supporting our immunofluorescence localization data that this collagen-like protein is found between adjacent cells. Our data strongly suggest that the collagen-like protein found in T. erythraeum functions to maintain the structural integrity of the trichome through the adhesion of adjacent cells. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
20. Whole genome comparison of six Crocosphaera watsonii strains with differing phenotypes.
- Author
-
Bench, Shellie R., Heller, Philip, Frank, Ildiko, Arciniega, Martha, Shilova, Irina N., Zehr, Jonathan P., and Lindell, D.
- Subjects
CYANOBACTERIA ,PHENOTYPES ,NITROGEN-fixing bacteria ,PHOSPHORUS ,MICROBIAL exopolysaccharides ,BIOSYNTHESIS ,GENOMES - Abstract
Crocosphaera watsonii, a unicellular nitrogen-fixing cyanobacterium found in oligotrophic oceans, is important in marine carbon and nitrogen cycles. Isolates of C. watsonii can be separated into at least two phenotypes with environmentally important differences, indicating possibly distinct ecological roles and niches. To better understand the evolutionary history and variation in metabolic capabilities among strains and phenotypes, this study compared the genomes of six C. watsonii strains, three from each phenotypic group, which had been isolated over several decades from multiple ocean basins. While a substantial portion of each genome was nearly identical to sequences in the other strains, a few regions were identified as specific to each strain and phenotype, some of which help explain observed phenotypic features. Overall, the small-cell type strains had smaller genomes and a relative loss of genetic capabilities, while the large-cell type strains were characterized by larger genomes, some genetic redundancy, and potentially increased adaptations to iron and phosphorus limitation. As such, strains with shared phenotypes were evolutionarily more closely related than those with the opposite phenotype, regardless of isolation location or date. Unexpectedly, the genome of the type-strain for the species, C. watsonii WH8501, was quite unusual even among strains with a shared phenotype, indicating it may not be an ideal representative of the species. The genome sequences and analyses reported in this study will be important for future investigations of the proposed differences in adaptation of the two phenotypes to nutrient limitation, and to identify phenotype-specific distributions in natural Crocosphaera populations. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
21. Pickling of Process-Oxidised Austenitic Stainless Steels in HNO3-HF Mixed Acid.
- Author
-
Lindell, D. and Pettersson, R.
- Subjects
- *
STAINLESS steel , *AUSTENITIC stainless steel , *OXIDES , *CHROMIUM , *MANUFACTURING processes - Abstract
Oxide formation during production annealing and the subsequent pickling response in mixed acid have been studied. The aims were to characterise the oxides formed and to understand how the pickling mechanism and kinetics are affected by the nature of the oxide. Totally, eight different versions of the austenitic stainless steel grades AISI 301, 304L and 309L were studied, all annealed in production lines. Cold rolled oxides (formed during annealing) are thin (< 1 µm), dense and formed in a multilayered manner. Hot rolled oxides (formed during reheating, hot rolling and annealing) are thicker (>1 µm) and more heterogeneous in thickness and composition. The dissolution rate of the chromium depleted layer (CDL) under the oxide is the most important factor for the overall pickling rate. The permeability of acid through the oxide and the tendency of the oxide to spall are also important factors affecting the pickling kinetics. The dense oxide formed on cold rolled materials can to some extent hinder the acid to reach the CDL. The oxides on hot rolled materials are porous and do not provide such a barrier but they are thicker and thereby more difficult to remove. Shot-blasting prior to pickling of the hot rolled materials improves the pickling performance because it thins the oxide, improves the permeability and increases the tendency of the oxide to spall during the pickling step. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
22. Respiratory Syncytial Virus-Induced Pulmonary Disease and Exacerbation of Allergic Asthma.
- Author
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Lukacs, N., Smit, J., Lindell, D., and Schaller, M.
- Published
- 2007
- Full Text
- View/download PDF
23. A community engagement initiative: service-learning in graduate nursing education.
- Author
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Narsavage GL, Lindell D, Chen Y, Savrin C, and Duffy E
- Published
- 2002
- Full Text
- View/download PDF
24. Hemichordates and deuterostome evolution: robust molecular phylogenetic support for a hemichordate + echinoderm clade.
- Author
-
Bromham, Lindell D. and Degnan, Bernard M.
- Subjects
- *
HEMICHORDATA , *FOSSIL chordata , *ECHINODERMATA - Abstract
SUMMARY Hemichordates were traditionally allied to the chordates, but recent molecular analyses have suggested that hemichordates are a sister group to the echinoderms, a relationship that has important consequences for the interpretation of the evolution of deuterostome body plans. However, the molecular phylogenetic analyses to date have not provided robust support for the hemichordate + echinoderm clade. We use a maximum likelihood framework, including the parametric bootstrap, to reanalyze DNA data from complete mitochondrial genomes and nuclear 18S rRNA. This approach provides the first statistically significant support for the hemichordate + echinoderm clade from molecular data. This grouping implies that the ancestral deuterostome had features that included an adult with a pharynx and a dorsal nerve cord and an indirectly developing dipleurula-like larva. [ABSTRACT FROM AUTHOR]
- Published
- 1999
- Full Text
- View/download PDF
25. Bacterial vaginosis and the effect of intermittent prophylactic treatment with an acid lactate gel.
- Author
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Andersch, Björn, Lindell, Ditte, Dahlén, Ingrid, Brandberg, Åke, Andersch, B, Lindell, D, Dahlén, I, and Brandberg, A
- Published
- 1990
- Full Text
- View/download PDF
26. Sensory symptoms and signs and results of quantitative sensory thermal testing in patients with lacunar infarct syndromes.
- Author
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Samuelsson, M, Samuelsson, L, and Lindell, D
- Published
- 1994
- Full Text
- View/download PDF
27. Glucose stimulation of somatostatin and insulin release from the isolated, perfused rat pancreas.
- Author
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Sorenson, Robert L., Lindell, Debra V., Elde, Robert P., Sorenson, R L, Lindell, D V, and Elde, R P
- Published
- 1980
- Full Text
- View/download PDF
28. Sulfur and Manganese Release from Soils Treated with Prilled Sulfur and Sulfur-Bentonite
- Author
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Lindell, D. L. and Sornsen, R. C.
- Published
- 1974
- Full Text
- View/download PDF
29. Developing personal and community learning in graduate nursing education through community engagement.
- Author
-
Narsavage GL, Batchelor H, Lindell D, and Chen Y
- Abstract
Community engagement through service-learning was introduced into a graduate program in nursing education to develop student leadership skills, interest in learning, and social responsibility. With faculty expertise and guidance, students worked in partnership with underserved community agencies. The goal of sustainability was accomplished by developing faculty expertise in service-learning as a method of instruction and integrating community engagement into academic assignments within existing courses. Opportunities to reflect on the benefits of the experiences were considered crucial to bridging service to learning in the community. Evaluation findings indicate that students gained insight into community needs and resources as they moved outside traditional health care settings. Graduates increased their understanding of their role as a resource to the community, and community agencies saw the value of a nurse educated at an advanced practice level. [ABSTRACT FROM AUTHOR]
- Published
- 2003
30. Differential regulation of ssb genes in the nitrogen-fixing cyanobacterium, Anabaena sp. strain PCC71201.
- Author
-
Kirti, Anurag, Kumar, Arvind, Rajaram, Hema, and Lindell, D.
- Subjects
- *
ANABAENA , *CYANOBACTERIA , *GENETIC regulation , *DNA-binding proteins , *OPERONS , *ESCHERICHIA coli , *NITROGEN-fixing microorganisms - Abstract
Anabaena sp. PCC7120 possesses three genes coding for single-stranded DNA-binding ( SSB) protein, of which ssb1 was a single gene, and ssb2 and ssb3 are the first genes of their corresponding operons. Regulation of the truncated ssb genes, ssb1 ( alr0088) and ssb2 ( alr7559), was unaffected by N-status of growth. They were negatively regulated by the SOS-response regulatory protein LexA, as indicated by the (i) binding of Anabaena LexA to the LexA box of regulatory regions of ssb1 and ssb2, and (ii) decreased expression of the downstream gfp reporter gene in Escherichia coli upon co-expression of LexA. However, the full-length ssb gene, ssb3 ( all4779), was regulated by the availability of Fe2+ and combined nitrogen, as indicated by (i) increase in the levels of SSB3 protein on Fe2+-depletion and decrease under Fe2+-excess conditions, and (ii) 1.5- to 1.6-fold decrease in activity under nitrogen-fixing conditions compared to nitrogen-supplemented conditions. The requirement of Fe2+ as a co-factor for repression by FurA and the increase in levels of FurA under nitrogen-deficient conditions in Anabaena (Lopez-Gomollon et al. 2007) indicated a possible regulation of ssb3 by FurA. This was substantiated by (i) the binding of FurA to the regulatory region of ssb3, (ii) repression of the expression of the downstream gfp reporter gene in E. coli upon co-expression of FurA, and (iii) negative regulation of ssb3 promoter activity by the upstream AT-rich region in Anabaena. This is the first report on possible role of FurA, an important protein for iron homeostasis, in DNA repair of cyanobacteria. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
31. Cold Surface Waters of the Sub-Antarctic Pacific Ocean Support High Cyanophage Abundances and Infection Levels.
- Author
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Shopen Gochev C, Demory D, Lopes Dos Santos A, Carlson MCG, Gutiérrez-Rodríguez A, Weitz JS, and Lindell D
- Subjects
- Pacific Ocean, Cyanobacteria virology, Synechococcus virology, Prochlorococcus virology, Antarctic Regions, Seawater virology, Seawater microbiology, Bacteriophages isolation & purification, Cold Temperature
- Abstract
Cyanobacterial distributions are shaped by abiotic factors including temperature, light and nutrient availability as well as biotic factors such as grazing and viral infection. In this study, we investigated the abundances of T4-like and T7-like cyanophages and the extent of picocyanobacterial infection in the cold, high-nutrient-low-chlorophyll, sub-Antarctic waters of the southwest Pacific Ocean during austral spring. Synechococcus was the dominant picocyanobacterium, ranging from 4.7 × 10
3 to 1.2 × 105 cells∙mL-1 , while Prochlorococcus abundances were relatively low overall, ranging from 1.0 × 103 to 3.9 × 104 cells∙mL-1 . Using taxon-specific, single-virus and single-cell polony methods, we found that cyanophages were on average 15-fold, and up to 50-fold, more abundant than cyanobacteria in these waters. T4-like cyanophages (ranging from 1.7 × 105 to 6.5 × 105 phage·mL-1 ) were 2.7-fold more abundant than T7-like cyanophages (ranging from 3.1 × 104 to 2.8 × 105 phage·mL-1 ). Picocyanobacteria were primarily infected by T4-like cyanophages with more Synechococcus (4.8%-12.1%) infected than Prochlorococcus (2.5%-6.2%), whereas T7-like cyanophages infected less than 1% of both genera. These infection levels translated to daily mortality in the range of 5.7%-26.2% and 2.9%-14.3% of the standing stock of Synechococcus and Prochlorococcus, respectively. Our findings suggest that T4-like cyanophages are significant agents of cyanobacterial mortality in the cold, low-iron, sub-Antarctic waters of the South Pacific Ocean., (© 2025 The Author(s). Environmental Microbiology published by John Wiley & Sons Ltd.)- Published
- 2025
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32. Adaptive loss of tRNA gene expression leads to phage resistance in a marine Synechococcus cyanobacterium.
- Author
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Zborowsky S, Tahan R, and Lindell D
- Subjects
- Seawater microbiology, Seawater virology, Synechococcus virology, Synechococcus genetics, Bacteriophages genetics, Bacteriophages physiology, RNA, Transfer genetics, RNA, Transfer metabolism
- Abstract
Synechococcus is a significant primary producer in the oceans, coexisting with cyanophages, which are important agents of mortality. Bacterial resistance against phage infection is a topic of significant interest, yet little is known for ecologically relevant systems. Here we use exogenous gene expression and gene disruption to investigate mechanisms underlying intracellular resistance of marine Synechococcus WH5701 to the Syn9 cyanophage. The restriction-modification and Gabija defence systems possessed by Synechococcus WH5701 did not contribute to resistance. Instead, resistance was primarily driven by insufficient levels of Leu
TAA tRNA, preventing translation of key phage genes in a passive, intracellular mode of resistance. Restoring cellular tRNA expression rendered the cyanobacterium sensitive to infection. We propose an evolutionary scenario whereby changes in cell codon usage, acquisition of tRNAs by the phage and loss of cell and phage tRNA expression resulted in an effective means of resistance, highlighting the dynamic interplay between bacteria and phages in shaping their co-evolutionary trajectories., Competing Interests: Competing interests: The authors declare no competing interests., (© 2025. The Author(s).)- Published
- 2025
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33. Civic knowledge and self-reported political astuteness of academic nurse educators in the United States.
- Author
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Gentry H, Patton RM, Lindell D, and Ludwick R
- Subjects
- Humans, Cross-Sectional Studies, United States, Female, Male, Surveys and Questionnaires, Adult, Middle Aged, Health Policy, Faculty, Nursing, Self Report, Politics
- Abstract
Background: A nurse's perspective is unique and invaluable to health policy. Although political astuteness is essential for nurses and nurse educators to be effective participants in health policy, there is a gap in the nursing literature on civic knowledge and its potential relationship to political astuteness., Purpose: This research aimed to assess the civic knowledge and self-reported political astuteness of academic nurse educators, their associated factors, and the relationship between these two concepts., Methods: This cross-sectional study used a national sample of academic nurse educators who answered 10 questions taken from the United States Citizenship and Immigration Services (USCIS) Naturalization test and completed the Political Astuteness Inventory (PAI)., Results: Over 51 % of the sample (n = 122) did not provide enough correct answers to pass the Naturalization test and over 35 % were determined to be either completely or slightly unaware politically. There was a medium positive correlation (r = 0.313, p < .001) between civic knowledge and self-reported political astuteness., Conclusion: Although nurse educators could be well-positioned to impact health policy, they may not have the knowledge or skills to fulfill this potential. Strategies for improving political astuteness include increasing civic knowledge and encouraging professional collaboration to promote nursing solidarity, influence, and power., Competing Interests: Declaration of competing interest The authors have no conflicts of interest to disclose., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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34. Lived experiences: Growing up with a seriously mentally ill parent.
- Author
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Shestiperov A, Grinstein-Cohen O, Lindell D, Irani E, and Kagan I
- Subjects
- Humans, Adult, Male, Female, Middle Aged, Qualitative Research, Parents psychology, Adaptation, Psychological, Young Adult, Child of Impaired Parents psychology, Resilience, Psychological, Quality of Life psychology, Mental Disorders psychology
- Abstract
Introduction: Individuals with serious mental illness often have persistent and disruptive symptoms. These can profoundly affect their children's lives, exposing them to adverse social and psychological conditions. Such conditions can result in traumatic lived experiences during childhood, which can carry over into adulthood, influencing their self-perceptions and shaping their attitudes toward themselves and society. To gain insights into this phenomenon, this study explored the lived experiences of adults who grew up with a parent with serious mental illness and their perceptions of their lives in adulthood., Design: This study used an interpretive phenomenological design., Methods: Participants were invited to voluntarily participate in the study through a call posted on social media. Semi-structured interviews were conducted with 30 adults (age range, 20-55 years) who grew up with a parent with serious mental illness. The interviews were recorded and transcribed, and inductive thematic analysis was used to identify main and overarching themes., Results: The overarching theme of transition from childhood survival to adulthood survival emerged and included four main themes: (1) a traumatic childhood, (2) perceived control, (3) resilience and general self-efficacy, and (4) adult quality of life. A traumatic childhood consisted of experiences of neglect and abuse, while participants used perceived control to achieve personal growth, self-care, and care of others. Resilience and general self-efficacy emerged during the transition to adulthood and helped participants further their social status and strengthen family bonds. Lastly, adult quality of life was described as being disturbed by feelings of loneliness and being burdensome, stemming from an inherent tendency to rely solely on themselves, leading to trust issues and mental health complications. Therefore, these adults found it difficult to reach out and get help or treatment for their concerns, as they initially did not want to appear dysfunctional or in need., Conclusion: This study has illuminated the lived experiences of a specific, vulnerable population that has not been intentionally explored until now. To delve into these experiences, we employed a distinctive qualitative approach, merging the interpretive phenomenological perspective with an inductive thematic analysis. This allowed for rich insight with a relatively large group of participants and enabled an in-depth exploration within this methodological framework. Consequently, this study constitutes a notable contribution to the extant body of knowledge, exploring the intricacies of personal growth and its impact on participants' quality of life. It uncovers the essence of resilience and general self-efficacy, revealing how these elements intertwine with the negative results observed. However, the study findings emphasize the need for healthcare professionals, including nurses and other caregivers, to be mindful of the long-lasting effects of the adverse experiences of children of patients with serious mental illness. Prioritizing active clinical assessment and implementing tailored interventions to address such children's specific needs and difficulties across different developmental stages is imperative. Such comprehensive and targeted approaches are crucial in providing appropriate support and promoting the well-being of these individuals., Clinical Relevance: Enhanced clinical attention in holistic psychiatric care is crucial for individuals and their relatives, especially children. Comprehensive assessments of children and adults raised by seriously mentally ill parents can enable tailored and preventive interventions, positively impacting overall quality of life., (© 2024 The Authors. Journal of Nursing Scholarship published by Wiley Periodicals LLC on behalf of Sigma Theta Tau International.)
- Published
- 2024
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35. Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre.
- Author
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Beckett SJ, Demory D, Coenen AR, Casey JR, Dugenne M, Follett CL, Connell P, Carlson MCG, Hu SK, Wilson ST, Muratore D, Rodriguez-Gonzalez RA, Peng S, Becker KW, Mende DR, Armbrust EV, Caron DA, Lindell D, White AE, Ribalet F, and Weitz JS
- Subjects
- Oceans and Seas, Food Chain, Population Dynamics, Seawater microbiology, Pacific Ocean, Ecosystem, Prochlorococcus
- Abstract
Photosynthesis fuels primary production at the base of marine food webs. Yet, in many surface ocean ecosystems, diel-driven primary production is tightly coupled to daily loss. This tight coupling raises the question: which top-down drivers predominate in maintaining persistently stable picocyanobacterial populations over longer time scales? Motivated by high-frequency surface water measurements taken in the North Pacific Subtropical Gyre (NPSG), we developed multitrophic models to investigate bottom-up and top-down mechanisms underlying the balanced control of Prochlorococcus populations. We find that incorporating photosynthetic growth with viral- and predator-induced mortality is sufficient to recapitulate daily oscillations of Prochlorococcus abundances with baseline community abundances. In doing so, we infer that grazers in this environment function as the predominant top-down factor despite high standing viral particle densities. The model-data fits also reveal the ecological relevance of light-dependent viral traits and non-canonical factors to cellular loss. Finally, we leverage sensitivity analyses to demonstrate how variation in life history traits across distinct oceanic contexts, including variation in viral adsorption and grazer clearance rates, can transform the quantitative and even qualitative importance of top-down controls in shaping Prochlorococcus population dynamics., (© 2024. The Author(s).)
- Published
- 2024
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36. Second Victim Phenomenon Educational Program Evaluation.
- Author
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Copley DJ, Burchill CN, Lindell D, and Dolansky MA
- Subjects
- Humans, Program Evaluation, Needs Assessment, Educational Status, Medical Errors
- Abstract
Second victim phenomenon (SVP) occurs when nurses who are involved in an unanticipated adverse event become victimized and traumatized by the event. Following a needs assessment, an SVP education program was implemented, including adverse events and SVP experiences, available support, and a case study. Evaluation indicated nurses had improved knowledge and attitude and increased practice intent. Education that promotes awareness is the first step to support nurses who experience events that can precipitate SVP., (Copyright © 2023 Wolters Kluwer Health, Inc. All rights reserved.)
- Published
- 2024
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37. Clinical Judgment Development and Assessment in Clinical Nursing Education.
- Author
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Calcagni L, Lindell D, Weaver A, and Jackson M
- Subjects
- Humans, Judgment, Educational Measurement, Nursing Education Research, Clinical Competence, Faculty, Nursing, Education, Nursing, Baccalaureate, Students, Nursing, Education, Nursing
- Abstract
Background: There is a gap in evidence for effective clinical teaching strategies to promote nursing students' development of clinical judgment (CJ)., Purpose: This study examined the effect of active learning strategies (ALSs) during clinical postconference sessions on the CJ of undergraduate nursing students., Methods: This quasi-experimental study of ALSs or standard postconferences used the Lasater Clinical Judgment Rubric (LCJR) to rate CJ at 3 time points. All faculty members and students were trained on use of the LCJR. Ratings were done by both faculty and students., Results: All ratings of CJ improved over time ( P < .001). Ratings of CJ varied between the control and intervention groups., Conclusions: The findings of this study contribute to knowledge regarding the effectiveness of clinical teaching strategies for CJ and preparation for entry to nursing practice., Competing Interests: The authors declare no conflicts of interest., (Copyright © 2023 Wolters Kluwer Health, Inc. All rights reserved.)
- Published
- 2023
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38. "Ditch the white coats": What LGBTQ+ patients prefer in their primary care provider.
- Author
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Broholm C, Lindell D, Trossello C, Lauren J, Smith B, Harris AB, Quinn Griffin MT, and Radix A
- Subjects
- Female, Humans, Sexual Behavior, Gender Identity, Patient-Centered Care, Sexual and Gender Minorities, Transgender Persons
- Abstract
Background: Health disparities in lesbian, gay, bisexual, transgender, queer and other sexual and gender minority (LGBTQ+) individuals are well documented, and there is a dearth of primary care providers (PCPs) with the knowledge, skills, and attitudes to sensitively care for this diverse population., Purpose: The purpose of this research study was to ask LGBTQ+ patients what qualities they prefer in their PCP. The findings will be used to better prepare nurse practitioners (NPs) to care for this diverse community and inform the training of future NPs to provide patient-centered care to LGBTQ+ individuals., Methodology: In this qualitative descriptive study, four focus groups were conducted remotely between December 2020 and January 2021 with self-identified LGBTQ+ patients of an LGBTQ+ health center in the northeast. Thematic analysis of the data elicited codes, categories, and themes. Strategies were implemented to promote trustworthiness of the results., Results: Twenty-eight participants shared the qualities they value in their PCP. Analysis revealed four themes: "Ditch the white coats"; "Meet me where I am"; "The relationship is key"; and "Be knowledgeable about and comfortable with LGBTQ+ people and their health care needs.", Conclusions: The focus groups elucidated important information on caring for the LGTBQ+ communities and insights into what NPs must do to provide patient-centered care to this diverse population., Implications: These findings can improve practice through a better understanding of LGBTQ+ patients' perspectives. Additionally, this study demonstrates the feasibility of directly asking our patients what they want in their health care provider., Competing Interests: Competing interests: The authors report no conflicts of interest., (Copyright © 2022 American Association of Nurse Practitioners.)
- Published
- 2023
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39. Widespread yet persistent low abundance of TIM5-like cyanophages in the oceans.
- Author
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Baran N, Carlson MCG, Sabehi G, Peleg M, Kondratyeva K, Pekarski I, and Lindell D
- Subjects
- Ecosystem, Phylogeny, Oceans and Seas, Indian Ocean, Synechococcus genetics, Bacteriophages genetics
- Abstract
Ocean ecosystems are inhabited by a diverse set of viruses that impact microbial mortality and evolution. However, the distribution and abundances of specific viral lineages, particularly those from the large bank of rare viruses, remains largely unknown. Here, we assessed the diversity and abundance of the TIM5-like cyanophages. The sequencing of three new TIM5-like cyanophage genomes and environmental amplicons of a signature gene from the Red Sea revealed highly conserved gene content and sequence similarity. We adapted the polony method, a solid-phase polymerase chain reaction assay, to quantify TIM5-like cyanophages during three 2000 km expeditions in the Pacific Ocean and four annual cycles in the Red Sea. TIM5-like cyanophages were widespread, detected at all latitudes and seasons surveyed throughout the photic zone. Yet they were generally rare, ranging between <100 and 4000 viruses·ml
-1 . Occasional peaks in abundance of 10- to 100-fold were observed, reaching 71,000 viruses·ml-1 . These peaks were ephemeral and seasonally variable in the Red Sea. Infection levels, quantified during one such peak, were very low. These characteristics of low diversity and abundance, as well as variable outbreaks, distinguishes the TIM5-like lineage from other major cyanophage lineages and illuminates that rare virus lineages can be persistent and widespread in the oceans., (© 2022 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.)- Published
- 2022
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40. Cyanophages from a less virulent clade dominate over their sister clade in global oceans.
- Author
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Maidanik I, Kirzner S, Pekarski I, Arsenieff L, Tahan R, Carlson MCG, Shitrit D, Baran N, Goldin S, Weitz JS, and Lindell D
- Subjects
- Indian Ocean, Phylogeny, Seawater, Bacteriophages genetics, Prochlorococcus genetics, Synechococcus genetics
- Abstract
Environmental virus communities are highly diverse. However, the infection physiology underlying the evolution of diverse phage lineages and their ecological consequences are largely unknown. T7-like cyanophages are abundant in nature and infect the marine unicellular cyanobacteria, Synechococcus and Prochlorococcus, important primary producers in the oceans. Viruses belonging to this genus are divided into two distinct phylogenetic clades: clade A and clade B. These viruses have narrow host-ranges with clade A phages primarily infecting Synechococcus genotypes, while clade B phages are more diverse and can infect either Synechococcus or Prochlorococcus genotypes. Here we investigated infection properties (life history traits) and environmental abundances of these two clades of T7-like cyanophages. We show that clade A cyanophages have more rapid infection dynamics, larger burst sizes and greater virulence than clade B cyanophages. However, clade B cyanophages were at least 10-fold more abundant in all seasons, and infected more cyanobacteria, than clade A cyanophages in the Red Sea. Models predicted that steady-state cyanophage abundances, infection frequency, and virus-induced mortality, peak at intermediate virulence values. Our findings indicate that differences in infection properties are reflected in virus phylogeny at the clade level. They further indicate that infection properties, together with differences in subclade diversity and host repertoire, have important ecological consequences with the less aggressive, more diverse virus clade having greater ecological impacts., (© 2022. The Author(s).)
- Published
- 2022
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41. Viruses affect picocyanobacterial abundance and biogeography in the North Pacific Ocean.
- Author
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Carlson MCG, Ribalet F, Maidanik I, Durham BP, Hulata Y, Ferrón S, Weissenbach J, Shamir N, Goldin S, Baran N, Cael BB, Karl DM, White AE, Armbrust EV, and Lindell D
- Subjects
- Pacific Ocean, Seawater microbiology, Prochlorococcus, Synechococcus, Viruses
- Abstract
The photosynthetic picocyanobacteria Prochlorococcus and Synechococcus are models for dissecting how ecological niches are defined by environmental conditions, but how interactions with bacteriophages affect picocyanobacterial biogeography in open ocean biomes has rarely been assessed. We applied single-virus and single-cell infection approaches to quantify cyanophage abundance and infected picocyanobacteria in 87 surface water samples from five transects that traversed approximately 2,200 km in the North Pacific Ocean on three cruises, with a duration of 2-4 weeks, between 2015 and 2017. We detected a 550-km-wide hotspot of cyanophages and virus-infected picocyanobacteria in the transition zone between the North Pacific Subtropical and Subpolar gyres that was present in each transect. Notably, the hotspot occurred at a consistent temperature and displayed distinct cyanophage-lineage composition on all transects. On two of these transects, the levels of infection in the hotspot were estimated to be sufficient to substantially limit the geographical range of Prochlorococcus. Coincident with the detection of high levels of virally infected picocyanobacteria, we measured an increase of 10-100-fold in the Synechococcus populations in samples that are usually dominated by Prochlorococcus. We developed a multiple regression model of cyanophages, temperature and chlorophyll concentrations that inferred that the hotspot extended across the North Pacific Ocean, creating a biological boundary between gyres, with the potential to release organic matter comparable to that of the sevenfold-larger North Pacific Subtropical Gyre. Our results highlight the probable impact of viruses on large-scale phytoplankton biogeography and biogeochemistry in distinct regions of the oceans., (© 2022. The Author(s).)
- Published
- 2022
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42. Genetic engineering of marine cyanophages reveals integration but not lysogeny in T7-like cyanophages.
- Author
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Shitrit D, Hackl T, Laurenceau R, Raho N, Carlson MCG, Sabehi G, Schwartz DA, Chisholm SW, and Lindell D
- Subjects
- Genetic Engineering, Humans, Lysogeny, Bacteriophages genetics, Prochlorococcus genetics, Synechococcus genetics
- Abstract
Marine cyanobacteria of the genera Synechococcus and Prochlorococcus are the most abundant photosynthetic organisms on earth, spanning vast regions of the oceans and contributing significantly to global primary production. Their viruses (cyanophages) greatly influence cyanobacterial ecology and evolution. Although many cyanophage genomes have been sequenced, insight into the functional role of cyanophage genes is limited by the lack of a cyanophage genetic engineering system. Here, we describe a simple, generalizable method for genetic engineering of cyanophages from multiple families, that we named REEP for REcombination, Enrichment and PCR screening. This method enables direct investigation of key cyanophage genes, and its simplicity makes it adaptable to other ecologically relevant host-virus systems. T7-like cyanophages often carry integrase genes and attachment sites, yet exhibit lytic infection dynamics. Here, using REEP, we investigated their ability to integrate and maintain a lysogenic life cycle. We found that these cyanophages integrate into the host genome and that the integrase and attachment site are required for integration. However, stable lysogens did not form. The frequency of integration was found to be low in both lab cultures and the oceans. These findings suggest that T7-like cyanophage integration is transient and is not part of a classical lysogenic cycle., (© 2021. The Author(s).)
- Published
- 2022
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43. Adaptation of the polony technique to quantify Gokushovirinae, a diverse group of single-stranded DNA phage.
- Author
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Sawaya NA, Baran N, Mahank S, Varsani A, Lindell D, and Breitbart M
- Subjects
- DNA, Single-Stranded genetics, DNA, Viral genetics, Ecosystem, Indian Ocean, Phylogeny, Bacteriophages genetics, Microviridae genetics
- Abstract
Advances in metagenomics have revealed the ubiquity of single-stranded DNA (ssDNA) phage belonging to the subfamily Gokushovirinae in the oceans; however, the abundance and ecological roles of this group are unknown. Here, we quantify gokushoviruses through adaptation of the polony method, in which viral template DNA is immobilized in a gel, amplified by PCR, and subsequently detected by hybridization. Primers and probes for this assay were designed based on PCR amplicon diversity of gokushovirus major capsid protein gene sequences from a depth profile in the Gulf of Aqaba, Red Sea sampled in September 2015. At ≥95% identity, these 87 gokushovirus sequences formed 14 discrete clusters with the largest clades showing distinct depth distributions. The application of the polony method enabled the first quantification of gokushoviruses in any environment. The gokushoviruses were most abundant in the upper 40 m of the stratified water column, with a subsurface peak in abundance of 1.26 × 10
5 viruses ml-1 . These findings suggest that discrete gokushovirus genotypes infect bacterial hosts that differentially partition in the water column. Since the designed primers and probe are conserved across marine ecosystems, this polony method can be applied broadly for the quantification of gokushoviruses throughout the global oceans., (© 2021 Society for Applied Microbiology and John Wiley & Sons Ltd.)- Published
- 2021
- Full Text
- View/download PDF
44. A single-cell polony method reveals low levels of infected Prochlorococcus in oligotrophic waters despite high cyanophage abundances.
- Author
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Mruwat N, Carlson MCG, Goldin S, Ribalet F, Kirzner S, Hulata Y, Beckett SJ, Shitrit D, Weitz JS, Armbrust EV, and Lindell D
- Subjects
- DNA Viruses, Ecosystem, Oceans and Seas, Seawater, Bacteriophages genetics, Prochlorococcus genetics
- Abstract
Long-term stability of picocyanobacteria in the open oceans is maintained by a balance between synchronous division and death on daily timescales. Viruses are considered a major source of microbial mortality, however, current methods to measure infection have significant methodological limitations. Here we describe a method that pairs flow-cytometric sorting with a PCR-based polony technique to simultaneously screen thousands of taxonomically resolved individual cells for intracellular virus DNA, enabling sensitive, high-throughput, and direct quantification of infection by different virus lineages. Under controlled conditions with picocyanobacteria-cyanophage models, the method detected infection throughout the lytic cycle and discriminated between varying infection levels. In North Pacific subtropical surface waters, the method revealed that only a small percentage of Prochlorococcus (0.35-1.6%) were infected, predominantly by T4-like cyanophages, and that infection oscillated 2-fold in phase with the diel cycle. This corresponds to 0.35-4.8% of Prochlorococcus mortality daily. Cyanophages were 2-4-fold more abundant than Prochlorococcus, indicating that most encounters did not result in infection and suggesting infection is mitigated via host resistance, reduced phage infectivity and inefficient adsorption. This method will enable quantification of infection for key microbial taxa across oceanic regimes and will help determine the extent that viruses shape microbial communities and ecosystem level processes.
- Published
- 2021
- Full Text
- View/download PDF
45. Quantification of T4-Like and T7-Like Cyanophages Using the Polony Method Show They Are Significant Members of the Virioplankton in the North Pacific Subtropical Gyre.
- Author
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Goldin S, Hulata Y, Baran N, and Lindell D
- Abstract
The North Pacific Subtropical Gyre (NPSG) is one of the largest biomes on Earth, with the cyanobacterium Prochlorococcus being the most abundant primary producer year-round. Viruses that infect cyanobacteria (cyanophages) influence cyanobacterial mortality, diversity and evolution. Two major cyanophage families are the T4-like cyanomyoviruses and T7-like cyanopodoviruses, yet their abundances and distribution patterns remain unknown due to difficulty in quantifying their populations. To address this limitation, we previously adapted the polony method (for PCR colony) to quantify T7-like cyanophages and applied it to spring populations in the Red Sea. Here, we further adapted the method for the quantification of T4-like cyanophages and analyzed the abundances of T4-like and T7-like cyanophage populations in the photic zone of the NPSG in summer 2015 and spring 2016. Combined, the peak abundances of these two cyanophage families reached 2.8 × 10
6 and 1.1 × 106 cyanophages ⋅ ml-1 in the summer and spring, respectively. They constituted between 3 and 16% of total virus-like particles (VLPs), comprising a substantial component of the virioplankton in the NPSG. While both cyanophage families were highly abundant, the T4-like cyanophages were generally 1.3-4.4 fold more so. In summer, cyanophages had similar and reproducible distribution patterns with depth. Abundances were relatively low in the upper mixed layer and increased to form a pronounced subsurface peak at 100 m (1.9 × 106 and 9.1 × 105 phages ⋅ ml-1 for the T4-like and T7-like cyanophages, respectively), coincident with the maximum in Prochlorococcus populations. Less vertical structure in cyanophage abundances was apparent in the spring profile, despite a subsurface peak in Prochlorococcus numbers. In the summer upper mixed layer, cyanophages constituted a smaller proportion of VLPs than below it and cyanophage to cyanobacteria ratios were considerably lower (1.3-2.8) than those of VLPs to bacteria (8.1-21.2). Differences in abundances between the two families and their contribution to VLPs with depth suggest differences in cyanophage production and/or decay processes relative to other members of the virioplankton in the upper mixed layer. These findings highlight the importance of quantifying distinct populations within the virioplankton to gain accurate understanding of their distribution patterns., (Copyright © 2020 Goldin, Hulata, Baran and Lindell.)- Published
- 2020
- Full Text
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46. Clear skies ahead: optimizing the learning environment for critical thinking from a qualitative analysis of interviews with expert teachers.
- Author
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Jaffe LE, Lindell D, Sullivan AM, and Huang GC
- Subjects
- Humans, Interviews as Topic methods, Learning, Qualitative Research, Faculty psychology, Thinking
- Abstract
Introduction: The learning environment refers to the physical, pedagogical, and psychosocial contexts in which learning occurs and critically influences the educational experience of trainees in the health professions. However, the manner in which individual faculty explicitly organize the educational setting to facilitate learning of essential competencies such as critical thinking deserves more examination; lack of attention to this component can undermine the formal curriculum. The purpose of our study was to examine how faculty shape the learning environment to advance their learners' development of critical thinking., Methods: We took a constructivist grounded theory approach using the framework method for qualitative content analysis. Data were derived from interviews conducted with 44 faculty identified as skilled teachers of critical thinking at eight academic health professions institutions., Results: Three major themes emerged regarding participants' descriptions of their experiences of how they optimized the learning environment to support critical thinking: 1) Setting the atmosphere (establishing ground rules, focusing on process rather than answers, and building trust), 2) Maintaining the climate (gently pushing learners, tolerating discomfort, and adjusting to learner level), and 3) Weathering the storm (responses to challenges to learning critical thinking, including time and effort, negative evaluations, and resistance to effortful learning)., Discussion: An optimal learning environment for critical thinking was actively created by faculty to establish a safe environment and shared understanding of expectations. Understanding how to produce a conducive learning climate is paramount in teaching essential topics such as critical thinking. These findings have potential utility for faculty development initiatives to optimize the learning environment.
- Published
- 2019
- Full Text
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47. Measuring the Value of Academic Nurse Educator Certification: Perceptions of Administrators and Educators.
- Author
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Poindexter K, Lindell D, and Hagler D
- Subjects
- Attitude of Health Personnel, Humans, Nurse Administrators psychology, United States, Certification, Faculty, Nursing psychology
- Abstract
Background: Certification is one option for validating the professional competence of academic nurse educators. The relative value associated with such certification has not yet been established., Method: Psychometric analysis of a new Perceived Value of Certification Tool for Academic Nurse Educators (PVCT-ANE) was conducted. Certified nurse educators (CNE) and noncertified nurse educators and nursing program administrators responded to an online survey using the PVCT-ANE., Results: A sample of 718 nurse faculty members and administrators from 48 states in the United States participated. Academic nurse educator certification was valued by nurse educators and administrators as representing specialized knowledge, attainment of a professional standard, educator competence, and professional credibility. Value statements associated with satisfaction and professional accomplishments were rated higher than statements associated with professional recognition and marketing., Conclusion: The PVCT-ANE is useful for assessing how different groups perceive the value associated with academic nurse educator certification. [J Nurs Educ. 2019;58(9):502-509.]., (Copyright 2019, SLACK Incorporated.)
- Published
- 2019
- Full Text
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48. Resistance in marine cyanobacteria differs against specialist and generalist cyanophages.
- Author
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Zborowsky S and Lindell D
- Subjects
- Aquatic Organisms growth & development, Aquatic Organisms virology, Bacteriophages physiology, Models, Biological, Prochlorococcus growth & development, Prochlorococcus virology, Synechococcus growth & development, Synechococcus virology
- Abstract
Long-term coexistence between unicellular cyanobacteria and their lytic viruses (cyanophages) in the oceans is thought to be due to the presence of sensitive cells in which cyanophages reproduce, ultimately killing the cell, while other cyanobacteria survive due to resistance to infection. Here, we investigated resistance in marine cyanobacteria from the genera Synechococcus and Prochlorococcus and compared modes of resistance against specialist and generalist cyanophages belonging to the T7-like and T4-like cyanophage families. Resistance was extracellular in most interactions against specialist cyanophages irrespective of the phage family, preventing entry into the cell. In contrast, resistance was intracellular in practically all interactions against generalist T4-like cyanophages. The stage of intracellular arrest was interaction-specific, halting at various stages of the infection cycle. Incomplete infection cycles proceeded to various degrees of phage genome transcription and translation as well as phage genome replication in numerous interactions. In a particularly intriguing case, intracellular capsid assembly was observed, but the phage genome was not packaged. The cyanobacteria survived the encounter despite late-stage infection and partial genome degradation. We hypothesize that this is tolerated due to genome polyploidy, which we found for certain strains of both Synechococcus and Prochlorococcus Our findings unveil a heavy cost of promiscuous entry of generalist phages into nonhost cells that is rarely paid by specialist phages and suggests the presence of unknown mechanisms of intracellular resistance in the marine unicellular cyanobacteria. Furthermore, these findings indicate that the range for virus-mediated horizontal gene transfer extends beyond hosts to nonhost cyanobacterial cells., Competing Interests: The authors declare no conflict of interest., (Copyright © 2019 the Author(s). Published by PNAS.)
- Published
- 2019
- Full Text
- View/download PDF
49. Adaptation to sub-optimal hosts is a driver of viral diversification in the ocean.
- Author
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Enav H, Kirzner S, Lindell D, Mandel-Gutfreund Y, and Béjà O
- Subjects
- Bacteriophages metabolism, Biological Evolution, Cyanobacteria virology, Genes, Viral, Models, Biological, Mutation genetics, Phenotype, Viruses genetics, Adaptation, Physiological, Biodiversity, Host-Pathogen Interactions, Oceans and Seas, Viruses metabolism
- Abstract
Cyanophages of the Myoviridae family include generalist viruses capable of infecting a wide range of hosts including those from different cyanobacterial genera. While the influence of phages on host evolution has been studied previously, it is not known how the infection of distinct hosts influences the evolution of cyanophage populations. Here, using an experimental evolution approach, we investigated the adaptation of multiple cyanophage populations to distinct cyanobacterial hosts. We show that when infecting an "optimal" host, whose infection is the most efficient, phage populations accumulated only a few mutations. However, when infecting "sub-optimal" hosts, different mutations spread in the phage populations, leading to rapid diversification into distinct subpopulations. Based on our results, we propose a model demonstrating how shifts in microbial abundance, which lead to infection of "sub-optimal" hosts, act as a driver for rapid diversification of viral populations.
- Published
- 2018
- Full Text
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50. Accuracy of Visual Tests for Primary Cervical Cancer Screening in Rural Nepal.
- Author
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Thapa N, Maharjan M, Shrestha G, Maharjan N, Lindell D, Zuo N, Yang J, Maskey N, and Cai H
- Subjects
- Adult, Aged, Biopsy, Cervix Uteri pathology, Cross-Sectional Studies, Female, Humans, Middle Aged, Nepal, Predictive Value of Tests, Rural Health Services, Squamous Intraepithelial Lesions of the Cervix pathology, Uterine Cervical Neoplasms pathology, Young Adult, Acetic Acid, Coloring Agents, Early Detection of Cancer methods, Iodides, Squamous Intraepithelial Lesions of the Cervix diagnosis, Uterine Cervical Neoplasms diagnosis
- Abstract
Introduction: In Nepal, cervical cancer is the most common female cancer. Unfortunately, there is no uniform effective screening system available all around the country. The objective of this study is to evaluate the cytology, Visual Inspection with Acetic Acid and with Lugol's Iodine alone or in combination to detect a pre-cancerous lesion in rural Nepal., Methods: It is an analytical cross-sectional study. Convenience sampling technique was used to select participants who were apparently healthy, married, non- pregnant women of aged 20-65 years for cervical cancer screening program. Screening tests were performed on all eligible women (n=2143) after socio-demographic and reproductive health data collection. A biopsy was applied as a gold standard test. Cross-tabulations were used to describe the test sensitivity, specificity, positive predictive value, and negative predictive value at a 95% confidence interval. Diagnostic odds ratio was also calculated., Results: A majority, 2143 (94%), of women accepted and participated in this study. The sensitivity vs specificity of cytology, VIA, and VILI was 57.1% vs 98.3%, 71.4% vs 88.8% and 78.6% vs 85.1%, and of the co-testing of 'Both positive VIA and VILI' and 'Either positive VIA or VILI' was 64.3% vs 85.7% and 90.1% vs 83.7% respectively. Negative predictive value of all tests exceeded 99.7%. Cytology had the highest Diagnostic odds ratio (64.9), followed by the co-test 'Either positive VIA or VILI' (27.7)., Conclusions: Cervical cancer screening by co-testing 'Either positive VIA or VILI' is more useful than cytology; VIA and or VILI are easy, safe, feasible and well-accepted tests in a low resource setting, Nepal.
- Published
- 2018
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