363 results on '"Yan, Chen"'
Search Results
52. Long-term fertilization alters soil properties and fungal community composition in fluvo-aquic soil of the North China Plain
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Wen, Yan-Chen, Li, Hai-Yan, Lin, Zhi-An, Zhao, Bing-Qiang, Sun, Zhan-Bin, Yuan, Liang, Xu, Jiu-Kai, and Li, Yan-Qing
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- 2020
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53. Generalized Haldane models on laser-coupling optical lattices
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Wanli Liu, Zhi Lin, Z. D. Wang, and Yan Chen
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Medicine ,Science - Abstract
Abstract We propose two generalized Haldane models on laser-coupling optical lattices. Laser-assisted nearest neighbour tunnelings generate artificial staggered magnetic flux, facilitating the realization of topological nontrivial band structures. As generalizations of Haldane model, these models support topological insulator and semimetal phases featuring high Chern numbers. We show simple rules for computing Chern numbers of our models and display the phase diagrams. Moreover, numerical calculations of energy spectra are in perfect agreement with our theoretical expectations. Our models may serve as two new family members for generalizing Haldane model on optical lattices.
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- 2018
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54. Extensive gene rearrangements in the mitochondrial genomes of two egg parasitoids, Trichogramma japonicum and Trichogramma ostriniae (Hymenoptera: Chalcidoidea: Trichogrammatidae)
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Long Chen, Peng-Yan Chen, Xiao-Feng Xue, Hai-Qing Hua, Yuan-Xi Li, Fan Zhang, and Shu-Jun Wei
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Medicine ,Science - Abstract
Abstract Animal mitochondrial genomes usually exhibit conserved gene arrangement across major lineages, while those in the Hymenoptera are known to possess frequent rearrangements, as are those of several other orders of insects. Here, we sequenced two complete mitochondrial genomes of Trichogramma japonicum and Trichogramma ostriniae (Hymenoptera: Chalcidoidea: Trichogrammatidae). In total, 37 mitochondrial genes were identified in both species. The same gene arrangement pattern was found in the two species, with extensive gene rearrangement compared with the ancestral insect mitochondrial genome. Most tRNA genes and all protein-coding genes were encoded on the minority strand. In total, 15 tRNA genes and seven protein-coding genes were rearranged. The rearrangements of cox1 and nad2 as well as most tRNA genes were novel. Phylogenetic analysis based on nucleotide sequences of protein-coding genes and on gene arrangement patterns produced identical topologies that support the relationship of (Agaonidae + Pteromalidae) + Trichogrammatidae in Chalcidoidea. CREx analysis revealed eight rearrangement operations occurred from presumed ancestral gene order of Chalcidoidea to form the derived gene order of Trichogramma. Our study shows that gene rearrangement information in Chalcidoidea can potentially contribute to the phylogeny of Chalcidoidea when more mitochondrial genome sequences are available.
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- 2018
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55. Pyroptosis burden is associated with anti-TNF treatment outcome in inflammatory bowel disease: new insights from bioinformatics analysis
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Gao, Xin, primary, Wang, Chen, additional, Shen, Xiao-Tong, additional, Li, Chen-Yang, additional, Li, Yan-Chen, additional, Gao, He, additional, Qian, Jia-Ming, additional, and Zhang, Xiao-Lan, additional
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- 2023
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56. Oxidative stress markers in patient-derived non-cancerous cervical tissues and cells
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Katerji, Meghri, Filippova, Maria, Wongworawat, Yan Chen, Siddighi, Sam, Bashkirova, Sveta, and Duerksen-Hughes, Penelope J.
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- 2020
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57. Prevalence and risk factors of having antibodies to class I and II human leukocyte antigens in older haploidentical allograft candidates
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Cao, Le-Qing, Lv, Meng, Xu, Lan-Ping, Zhang, Xiao-Hui, Chen, Huan, Chen, Yu-Hong, Wang, Feng-Rong, Han, Wei, Sun, Yu-Qian, Yan, Chen-Hua, Tang, Fei-Fei, Mo, Xiao-Dong, Liu, Kai-Yan, Huang, Xiao-Jun, and Chang, Ying-Jun
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- 2020
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58. Statistical characterization of therapeutic protein modifications
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Tsung-Heng Tsai, Zhiqi Hao, Qiuting Hong, Benjamin Moore, Cinzia Stella, Jeffrey H. Zhang, Yan Chen, Michael Kim, Theo Koulis, Gregory A. Ryslik, Erik Verschueren, Fred Jacobson, William E. Haskins, and Olga Vitek
- Subjects
Medicine ,Science - Abstract
Abstract Peptide mapping with liquid chromatography–tandem mass spectrometry (LC-MS/MS) is an important analytical method for characterization of post-translational and chemical modifications in therapeutic proteins. Despite its importance, there is currently no consensus on the statistical analysis of the resulting data. In this manuscript, we distinguish three statistical goals for therapeutic protein characterization: (1) estimation of site occupancy of modifications in one condition, (2) detection of differential site occupancy between conditions, and (3) estimation of combined site occupancy across multiple modification sites. We propose an approach, which addresses these goals in terms of summarizing the quantitative information from the mass spectra, statistical modeling, and model-based analysis of LC-MS/MS data. We illustrate the approach using an LC-MS/MS experiment from an antibody-drug conjugate and its monoclonal antibody intermediate. The performance was compared to a ‘naïve’ data analysis approach, by using computer simulation, evaluation of differential site occupancy in positive and negative controls, and comparisons of estimated site occupancy with orthogonal experimental measurements of N-linked glycoforms and total oxidation. The results demonstrated the importance of replicated studies of protein characterization, and of appropriate statistical modeling, for reproducible, accurate and efficient site occupancy estimation and differential analysis.
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- 2017
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59. A tightly regulated IL-22 response maintains immune functions and homeostasis in systemic viral infection
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Panpan Yi, Yuejin Liang, Denley Ming Kee Yuan, Zuliang Jie, Zakari Kwota, Yan Chen, Yingzi Cong, Xuegong Fan, and Jiaren Sun
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Medicine ,Science - Abstract
Abstract Interleukin-22 (IL-22) plays an important role in host immunity and tissue homeostasis in infectious and inflammatory diseases. However, the function and regulation of IL-22 in viral infection remain largely unknown. Here, we report that viral infection triggered early IL-22 production from the liver and lymphoid organs. γδ T cells are the main immune cells to produce IL-22 in the liver, a process mediated by the IL-23/phosphoinositide 3-kinase (PI3K)/mammalian target of rapamycin complex 1 (mTORC1) signaling pathway. In the presence of IL-23, IL-22 production is independent of aryl hydrocarbon receptor (AhR) signaling. In acute and persistent viral infections, IL-22 deficiency resulted in thymic and splenic hypertrophy, while excessive IL-22 induced atrophy in these lymphoid organs. Moreover, IL-22 deficiency enhanced T cell responses to promote viral clearance, but increased IL-22 in vivo decreased T cell numbers and functions in the liver and lymphoid tissues. Together, our findings reveal a significant effect of the IL-23/PI3K/mTORC1 axis on regulating IL-22 production and also identify a novel role of IL-22 in controlling antiviral T cell responses in the non-lymphoid and lymphoid organs during acute and persistent viral infections.
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- 2017
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60. Association of increased Treg and Th17 with pathogenesis of moyamoya disease
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Leihua Weng, Xiang Cao, Lijuan Han, Haoran Zhao, Shuwei Qiu, Yaping Yan, Xiaoying Wang, Xiangyan Chen, Weihong Zheng, Xin Xu, Yuanyuan Gao, Yan Chen, Jie Li, Yongbo Yang, and Yun Xu
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Medicine ,Science - Abstract
Abstract Immuno-inflammation has been shown to play a pivotal role in the pathogenesis of moyamoya disease (MMD). However, how did circulating Treg/Th17 cells involve in MMD patients remains unclear. 26 MMD, 21 atherothrombotic stroke, and 32 healthy controls were enrolled in this study. MMD patients have a significantly higher percentage of circulating Treg and Th17 cells as well as their dominantly secreting cytokines than other groups (P
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- 2017
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61. Prognostic value of hypoalbuminemia for adverse outcomes in patients with rheumatic heart disease undergoing valve replacement surgery
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Xue-biao Wei, Lei Jiang, Yuan-hui Liu, Du Feng, Peng-cheng He, Ji-yan Chen, Dan-qing Yu, and Ning Tan
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Medicine ,Science - Abstract
Abstract High-risk patients with rheumatic heart disease (RHD) who were undergoing valve replacement surgery (VRS) were not identified entirely. This study included 1782 consecutive patients with RHD who were undergoing VRS to explore the relationship between hypoalbuminemia and adverse outcomes and to confirm whether hypoalbuminemia plays a role in risk evaluation. A total of 27.3% of the RHD patients had hypoalbuminemia. In-hospital deaths were significantly higher in the hypoalbuminemic group than in the non-hypoalbuminemic group (6.6% vs 3.1%, P = 0.001). Hypoalbuminemia was an independent predictor of in-hospital death (OR = 1.89, P = 0.014), even after adjusting for the Euro score. The addition of hypoalbuminemia to Euro score enhanced net reclassification improvement (0.346 for in-hospital death, P = 0.004; 0.306 for 1-year death, p = 0.005). A Kaplan-Meier curve analysis revealed that the cumulative rate of 1-year mortality after the operation was higher in patients with a new Euro score ≥6. These findings indicated that hypoalbuminemia was an independent risk factor for in-hospital and 1-year mortality after VRS in patients with RHD, which might have additive prognostic value to Euro score.
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- 2017
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62. The antifungal effects and mechanical properties of silver bromide/cationic polymer nano-composite-modified Poly-methyl methacrylate-based dental resin
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Yu Zhang, Yin-yan Chen, Li Huang, Zhi-guo Chai, Li-juan Shen, and Yu-hong Xiao
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Medicine ,Science - Abstract
Abstract Poly-methyl methacrylate (PMMA)-based dental resins with strong and long-lasting antifungal properties are critical for the prevention of denture stomatitis. This study evaluated the antifungal effects on Candida albicans ATCC90028, the cytotoxicity toward human dental pulp cells (HDPCs), and the mechanical properties of a silver bromide/cationic polymer nano-composite (AgBr/NPVP)-modified PMMA-based dental resin. AgBr/NPVP was added to the PMMA resin at 0.1, 0.2, and 0.3 wt%, and PMMA resin without AgBr/NPVP served as the control. Fungal growth was inhibited on the AgBr/NPVP-modified PMMA resin compared to the control (P 0.05) between the experimental and control groups. These data indicate that the incorporation of AgBr/NPVP conferred strong and long-lasting antifungal effects against Candida albicans to the PMMA resin, and it has low toxicity toward HDPCs, and its mechanical properties were not significantly affected.
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- 2017
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63. Multiple myeloma acquires resistance to EGFR inhibitor via induction of pentose phosphate pathway
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Yan Chen, Ruibin Huang, Jianghua Ding, Dexiang Ji, Bing Song, Liya Yuan, Hong Chang, and Guoan Chen
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Medicine ,Science - Abstract
Abstract Multiple myeloma (MM) was characterized by frequent mutations in KRAS/NRAS/BRAF within the EGFR pathway that could induce resistance to EGFR inhibitors. We here report that EGFR inhibition solely exhibited moderate inhibition in KRAS/NRAS/BRAF wildtype (triple-WT) MM cells, whilst had no effect in myeloma cells with any of the mutated genes. The moderate inhibitory effect was conferred by induction of pentose phosphate pathway (PPP) when cells were treated with Gefitinib, the EGFR inhibitor. Combination of Gefitinib with PPP inhibitor 6AN effected synergistically in triple-WT cells. The inhibition could be restored by addition of NADPH. Dual EGFR/ERBB2 inhibitor Afatinib also exhibited similar effects. Further genetic silencing of EGFR, ERBB2 and mTOR indicated that major effect conferred by ERBB2 was via convergence to EGFR pathway in MM. Our results contributed to the individualized targeted therapy with EGFR inhibitors in MM.
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- 2015
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64. Assessment of the embolization effect of temperature-sensitive p(N-isopropylacrylamide-co-butyl methylacrylate) nanogels in the rabbit renal artery by CT perfusion and confirmed by macroscopic examination
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Yanbing Zhao, Zhen Zhang, Kun Qian, Ping Han, Gui-Na Ma, Nanchuan Jiang, Xin Zhang, Hongsen Zhang, Li Han, Yan Chen, Chuansheng Zheng, and Chunyuan Cen
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medicine.medical_treatment ,Science ,Nanogels ,Perfusion scanning ,Article ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Renal Artery ,medicine.artery ,medicine ,Animals ,Embolization ,Right Renal Artery ,Renal artery ,Kidney ,Multidisciplinary ,business.industry ,Temperature ,Collateral circulation ,Embolization, Therapeutic ,Perfusion ,medicine.anatomical_structure ,Renal blood flow ,Nanoparticles ,Medicine ,Rabbits ,Nuclear medicine ,business ,Tomography, X-Ray Computed ,X-ray tomography ,030217 neurology & neurosurgery - Abstract
Transcatheter embolization is an important treatment method in clinical therapy, and vascular embolization material plays a key role in embolization. The temperature-sensitive p(N-isopropylacrylamide-co-butyl methylacrylate) (PIB) nanogel is a novel embolic agent. To evaluate the feasibility of the nanogel as a blood vessel embolization agent, we aimed to assess the effect of embolization with PIB nanogels in the rabbit renal artery by non-invasive computed tomography (CT) perfusion, macroscopic and histological examination. Ten healthy adult Japanese rabbits were used to implement RAE of PIB nanogels in their right kidneys. CT perfusion scans were performed pre- and post-treatment at various time-points (1, 4, 8, and 12 weeks). Two rabbits were euthanized and histologically examined at each time-point, and the remaining rabbits were euthanized at 12 weeks after embolization. The RAE efficacy of the nanogels was further confirmed by macroscopic and histological examination. The renal volume and renal blood flow (BF) of the right kidney were significantly decreased post-treatment compared with those pre-treatment (volume: pre, 9278 ± 1736 mm3; post 1 week, 5155 ± 979 mm3, P 3, P 3, P 3, P P P P P
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- 2021
65. Correlating work hardening with co-activation of stacking fault strengthening and transformation in a high entropy alloy using in-situ neutron diffraction
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S.S. Nene, Bharat Gwalani, Ke An, M. Frank, Yan Chen, Arun Devaraj, Elizabeth J. Kautz, and Rajiv S. Mishra
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010302 applied physics ,Multidisciplinary ,Materials science ,Science ,Twip ,Neutron diffraction ,Mechanical properties ,02 engineering and technology ,Slip (materials science) ,Work hardening ,Metals and alloys ,Plasticity ,021001 nanoscience & nanotechnology ,01 natural sciences ,Article ,Stacking-fault energy ,0103 physical sciences ,Medicine ,Composite material ,0210 nano-technology ,Crystal twinning ,Stacking fault - Abstract
Transformation induced plasticity (TRIP) leads to enhancements in ductility in low stacking fault energy (SFE) alloys, however to achieve an unconventional increase in strength simultaneously, there must be barriers to dislocation motion. While stacking faults (SFs) contribute to strengthening by impeding dislocation motion, the contribution of SF strengthening to work hardening during deformation is not well understood; as compared to dislocation slip, twinning induced plasticity (TWIP) and TRIP. Thus, we used in-situ neutron diffraction to correlate SF strengthening to work hardening behavior in a low SFE Fe40Mn20Cr15Co20Si5 (at%) high entropy alloy, SFE ~ 6.31 mJ m−2. Cooperative activation of multiple mechanisms was indicated by increases in SF strengthening and γ-f.c.c. → ε-h.c.p. transformation leading to a simultaneous increase in strength and ductility. The present study demonstrates the application of in-situ, neutron or X-ray, diffraction techniques to correlating SF strengthening to work hardening.
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- 2020
66. A promising and cost-effective biochar adsorbent derived from jujube pit for the removal of Pb(II) from aqueous solution
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Xuebin Li, Jinbao Wang, Yu Liu, Yan Chen, Mouyuan Yang, and Junkai Gao
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Multidisciplinary ,Aqueous solution ,Pollution remediation ,Chemistry ,Kinetics ,lcsh:R ,lcsh:Medicine ,Sorption ,02 engineering and technology ,010501 environmental sciences ,021001 nanoscience & nanotechnology ,01 natural sciences ,Article ,Environmental impact ,Adsorption ,Chemical engineering ,Ion adsorption ,Desorption ,Biochar ,lcsh:Q ,0210 nano-technology ,lcsh:Science ,Pyrolysis ,0105 earth and related environmental sciences - Abstract
This study evaluated the Pb(II) sorption capacity of jujube pit biochar (JPB) in aqueous solution, which was derived from jujube pit by pyrolysis and used as a promising and economical adsorbent. More importantly, the utilization of JPB could realize the recycling of agricultural residues. The JPB was characterized using conventional science technologies, including SEM, BET and FT-IR, and the sorption capacity of JPB for lead ions was investigated according to different adsorption parameters, such as the kinetics data, solution pH, isotherms data, coexisting ions of Na+ and K+, desorption and reusability, and solution temperature. The results of kinetics data suggested that the lead ion adsorption process by JPB could be fast to reach equilibrium within 30 min. Additionally, the adsorption capacity of JPB for Pb(II) was calculated to be maximum for 137.1 mg/g at pH 6.0. More importantly, after five cycles of desorption and reuse, the JPB still reached 70% of its original adsorption capacity. All the results suggested that JPB had a broad application prospect for the purification of lead ions in practical.
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- 2020
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67. Genome-wide identification of miRNAs and their targets during early somatic embryogenesis in Dimocarpus longan Lour
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Zhongxiong Lai, Yan Chen, Xiaoping Xu, Xu Chen, Yukun Chen, Xiaohui Chen, Yuling Lin, Liyao Su, Zihao Zhang, and Qinglin Zhang
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0106 biological sciences ,0301 basic medicine ,Cell biology ,Somatic embryogenesis ,Molecular biology ,Gene regulatory network ,lcsh:Medicine ,Stem cells ,Biology ,01 natural sciences ,Article ,03 medical and health sciences ,Sapindaceae ,Rapid amplification of cDNA ends ,Plant Growth Regulators ,Gene Expression Regulation, Plant ,microRNA ,Developmental biology ,Gene Regulatory Networks ,lcsh:Science ,Gene ,Regulation of gene expression ,Multidisciplinary ,Whole Genome Sequencing ,Sequence Analysis, RNA ,Gene Expression Profiling ,Alternative splicing ,Biological techniques ,lcsh:R ,Gene Expression Regulation, Developmental ,High-Throughput Nucleotide Sequencing ,Computational biology and bioinformatics ,Gene expression profiling ,MicroRNAs ,030104 developmental biology ,RNA, Plant ,lcsh:Q ,Plant sciences ,010606 plant biology & botany ,Biotechnology - Abstract
miRNAs are endogenous regulatory factors that play pivotal roles in post-transcriptional regulation. However, their specific roles in early somatic embryogenesis (SE) remain unclear. Study of the SE system is fundamental for clarifying the molecular mechanisms in Dimocarpus longan. We identified 289 known miRNAs from 106 different miRNA families and 1087 novel miRNAs during early longan SE, including embryogenic callus (EC), incomplete pro-embryogenic culture (ICpEC), globular embryo (GE), and non-embryogenic callus (NEC). The abundances of known miRNAs were concentrated in GE. The differentially expression (DE) miRNAs showed five expression patterns during early SE. Largely miRNAs were expressed highly and specially in EC, ICpEC, and GE, respectively. Some miRNAs and putative target genes were enriched in lignin metabolism. Most potential targets were related to the pathways of plant hormone signal transduction, alternative splicing, tyrosine metabolism and sulfur metabolism in early longan SE. The regulatory relationships between dlo-miR166a-3p and DlHD-zip8, dlo-miR397a and DlLAC7, dlo-miR408-3p and DlLAC12 were confirmed by RNA ligase-mediated rapid amplification of cDNA ends. The expression patterns of eight DE miRNAs detected by qRT-PCR were consistent with RNA-seq. Finally, the miRNA regulatory network in early SE was constructed, which provided new insight into molecular mechanism of early SE in longan.
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- 2020
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68. Field evaluation of sex pheromones and binding specificity of pheromone binding protein 4 in Tryporyza intacta (Lepidoptera: Crambidae)
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Yan Chen, Hui Ai, Jie Bi, Mao Yuling, Guan Chuxiong, Xu Hanliang, Yuwei Hu, Yuying Liu, Ya Chen, Ya Zheng, and Mao Yongkai
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0106 biological sciences ,0301 basic medicine ,Behavioural ecology ,media_common.quotation_subject ,Gene Expression ,lcsh:Medicine ,Insect ,Biology ,01 natural sciences ,Article ,Lepidoptera genitalia ,03 medical and health sciences ,Crambidae ,Animals ,Sex Attractants ,Mating ,Pest Control, Biological ,lcsh:Science ,media_common ,Multidisciplinary ,lcsh:R ,biology.organism_classification ,Saccharum ,Lepidoptera ,Smell ,010602 entomology ,030104 developmental biology ,Evolutionary biology ,Sex pheromone ,Insect Proteins ,Pheromone ,lcsh:Q ,PEST analysis ,Carrier Proteins ,Pheromone binding protein ,Entomology ,Protein Binding - Abstract
The recognition of chemical signal including volatile odorants and pheromones is very important in the olfactory physiological behaviors of insects, such as avoiding predators, seeking food and mating partners. The sugarcane borer, Tryporyza intacta is the most harmful insect in sugarcane region in Southeast Asia and Southern China, however, the study of their molecular biology and physiology was limited. Here we demonstrated that the sex pheromone (E11-16:Ald: Z11-16:Ald = 7:3) were most effective to T. intacta. In addition, compared the traditional rubber lure, a new microsphere formulation lure can optimize the trapping effect and might be widely used in the sugarcane growing area. To obtain a better understanding of the olfactory molecular mechanism of pheromone-based mate recognition system, we have cloned the full-length gene of the TintPBP4 and expressed in Escherichia coli. Our phylogenetic analysis highlighted that the TintPBP4 was highly conserved among diverse species of Lepidoptera. Furthermore, the results of QRT-PCR demonstrated that TintPBP4 transcripts were abundantly expressed in the antennae of T. intacta, especially in the male adults. The fluorescence binding experiments showed the TintPBP4 exhibited strong binding capacities to the sex pheromone components. These results will not only provide more understanding for the functional analysis of olfactory proteins from T. intacta, but also assist in the exploitation and development of sex pheromones in the integrated biological control of this pest.
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- 2020
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69. Author Correction: Multiple myeloma acquires resistance to EGFR inhibitor via induction of pentose phosphate pathway.
- Author
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Chen, Yan, Huang, Ruibin, Ding, Jianghua, Ji, Dexiang, Song, Bing, Yuan, Liya, Chang, Hong, and Chen, Guoan
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PENTOSE phosphate pathway ,MULTIPLE myeloma ,EPIDERMAL growth factor receptors ,TECHNICAL reports - Abstract
This document is a correction notice for an article titled "Multiple myeloma acquires resistance to EGFR inhibitor via induction of pentose phosphate pathway" published in Scientific Reports. The correction addresses an error in Figure 2 of the article, where incorrect images were used during the image assembly. The correct Figure 2 and accompanying legend are provided in the correction notice. The authors of the article are Yan Chen, Ruibin Huang, Jianghua Ding, Dexiang Ji, Bing Song, Liya Yuan, Hong Chang, and Guoan Chen. [Extracted from the article]
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- 2023
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70. Phytoavailability of bound residue of Carbendazim to Chinese cabbage (Brassica campestris ssp.chinensis) coexisted with Superabsorbent polymers
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Yatian Yang, Yan Chen, Wei Li, Wei Guo, Haiyan Wang, Qingfu Ye, and Xin Gu
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Crops, Agricultural ,Polymers ,Brassica ,Amendment ,Biological Availability ,lcsh:Medicine ,010501 environmental sciences ,Plant Roots ,01 natural sciences ,Article ,Environmental impact ,Soil ,chemistry.chemical_compound ,Dry weight ,Carbon Radioisotopes ,lcsh:Science ,Nutrition ,0105 earth and related environmental sciences ,Multidisciplinary ,biology ,Chemistry ,Carbendazim ,lcsh:R ,Hydrogels ,04 agricultural and veterinary sciences ,Pesticide ,biology.organism_classification ,Bioavailability ,Horticulture ,Shoot ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Benzimidazoles ,Phytotoxicity ,lcsh:Q ,Carbamates - Abstract
Understanding the bioavailability and phytotoxicity of Carbendazim (MBC) bound residues (BR) in soils incubated with different Superabsorbent polymer (SAP) amendment on succeeding crops is essential to assess their environmental fate and risks. In our research, we studied the morphological characteristics and 14C-accumulation of Chinese cabbage and released BR in three typical cultivated soils. The plant dry weight was in order of superabsorbent-hydrogels formulations (HMBC) > MBC > MBC and SAP (MBC-SAP) at 35 d in basic soil 3 (S3), with 675.40 ± 29.07 mg/plant.d.w, 575.93 ± 25.35 mg/plant.d.w and 427.86 ± 18.79 mg/plant.d.w. The whole plant accumulated 2-fold more BR when grew in neutral soil 2 (S2) treated with SAP than MBC at 7 d. The root accumulated a greater proportion of 14C-MBC residue than shoot, with order of MBC-SAP > MBC > HMBC at 21d. The results indicate MBC-BR could be released and accumulated in plant. HMBC promoted the Chinese cabbage growth with lowest 14C accumulation, while MBC-SAP inhibited plant growth with the highest 14C uptake. The released BR rate was 61.43 ± 3.75% of initial BR in MBC-SAP, with 2-fold higher than MBC and HMBC. It is assumed HMBC could be a potential environmentally friendly measure for rational use of pesticides in future.
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- 2020
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71. Thermal Management of GaN-on-Si High Electron Mobility Transistor by Copper Filled Micro-Trench Structure
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Yu Yan Chen, Ray-Hua Horng, Srikant Kumar Mohanty, and Ping Hung Yeh
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Materials for devices ,Materials science ,Silicon ,chemistry.chemical_element ,lcsh:Medicine ,02 engineering and technology ,High-electron-mobility transistor ,01 natural sciences ,Article ,Engineering ,0103 physical sciences ,Deep reactive-ion etching ,Power semiconductor device ,Electroplating ,lcsh:Science ,010302 applied physics ,Multidisciplinary ,business.industry ,lcsh:R ,021001 nanoscience & nanotechnology ,Copper ,chemistry ,Trench ,Optoelectronics ,lcsh:Q ,0210 nano-technology ,business ,DC bias - Abstract
Self-heating effect is a major limitation in achieving the full performance potential of high power GaN power devices. In this work, we reported a micro-trench structure fabricated on the silicon substrate of an AlGaN/GaN high electron mobility transistor (HEMT) via deep reactive ion etching, which was subsequently filled with high thermal conductive material, copper using the electroplating process. From the current-voltage characteristics, the saturation drain current was improved by approximately 17% with the copper filled micro-trench structure due to efficient heat dissipation. The IDS difference between the pulse and DC bias measurement was about 21% at high bias VDS due to the self-heating effect. In contrast, the difference was reduced to approximately 8% for the devices with the implementation of the proposed structure. Using Micro-Raman thermometry, we showed that temperature near the drain edge of the channel can be lowered by approximately ~22 °C in a HEMT operating at ~10.6 Wmm−1 after the implementation of the trench structure. An effective method for the improvement of thermal management to enhance the performance of GaN-on-Silicon HEMTs was demonstrated.
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- 2019
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72. Direct Conversion of Human Urine Cells to Neurons by Small Molecules
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Hongcheng Wei, Feima Wu, Yan Chen, Fan Yang, Anteneh Getachew, Yin-xiong Li, Jiaye Zhang, Yuanqi Zhuang, Kai You, Xiaofen Zhong, Zuoxian Lin, Xiaotong Gu, Guosheng Xu, Tingcai Pan, and Dongsheng Guo
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Adult ,Male ,Cell type ,Cell ,lcsh:Medicine ,Urine ,Article ,Small Molecule Libraries ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Patch clamp ,lcsh:Science ,030304 developmental biology ,Neurons ,Transdifferentiation ,0303 health sciences ,Multidisciplinary ,Chemistry ,lcsh:R ,Cell Differentiation ,Cellular Reprogramming ,Cellular neuroscience ,Cell biology ,Electrophysiology ,medicine.anatomical_structure ,GABAergic ,lcsh:Q ,Neuron ,Reprogramming ,030217 neurology & neurosurgery - Abstract
Transdifferentiation of other cell type into human neuronal cells (hNCs) provides a platform for neural disease modeling, drug screening and potential cell-based therapies. Among all of the cell donor sources, human urine cells (hUCs) are convenient to obtain without invasive harvest procedure. Here, we report a novel approach for the transdifferentiation of hUCs into hNCs. Our study demonstrated that a combination of seven small molecules (CAYTFVB) cocktail induced transdifferentiation of hUCs into hNCs. These chemical-induced neuronal cells (CiNCs) exhibited typical neuron-like morphology and expressed mature neuronal markers. The neuronal-like morphology revealed in day 1, and the Tuj1-positive CiNCs reached to about 58% in day 5 and 38.36% Tuj1+/MAP2+ double positive cells in day 12. Partial electrophysiological properties of CiNCs was obtained using patch clamp. Most of the CiNCs generated using our protocol were glutamatergic neuron populations, whereas motor neurons, GABAergic or dopaminergic neurons were merely detected. hUCs derived from different donors were converted into CiNCs in this work. This method may provide a feasible and noninvasive approach for reprogramming hNCs from hUCs for disease models and drug screening.
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- 2019
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73. Antioxidative capacity is highly associated with the storage property of tuberous roots in different sweetpotato cultivars
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Hua Zhang, Zhuo Han, Kang-Di Hu, Xiao-Yan Chen, Jun Tang, Gai-Fang Yao, Zhong-Qin Huang, Yan-Hong Li, Lan-Ying Hu, and Si-Qi Wang
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0301 basic medicine ,lcsh:Medicine ,Ipomoea ,Plant Roots ,Antioxidants ,Article ,Plant breeding ,Superoxide dismutase ,03 medical and health sciences ,Lipoxygenase ,0302 clinical medicine ,Ascorbate Peroxidases ,Cultivar ,Ipomoea batatas ,lcsh:Science ,Peroxidase ,Multidisciplinary ,biology ,Superoxide Dismutase ,lcsh:R ,food and beverages ,APX ,biology.organism_classification ,Catalase ,Enzymes ,Plant Leaves ,Horticulture ,030104 developmental biology ,Point of delivery ,Peroxidases ,biology.protein ,lcsh:Q ,Reactive Oxygen Species ,030217 neurology & neurosurgery - Abstract
The activities and gene expression of antioxidative enzymes and the ROS content were analyzed in two typical storage-tolerant cultivars (Xushu 32 and Shangshu 19) and another two storage-sensitive cultivars (Yanshu 25 and Sushu 16) to explore the association between the storage capacity of sweetpotato (Ipomoea batatas (L.) Lam) and ROS scavenging capability. The storage roots of the storage-tolerant cultivars maintained higher activities and expression levels of antioxidative enzymes, including ascorbate peroxidase (APX), peroxidase (POD), catalase (CAT), and superoxide dismutase (SOD); lower activity and expression of lipoxygenase (LOX); and lower accumulation of ROS metabolites compared with the storage-sensitive cultivars. The antioxidative capability and ROS parameters of leaves were positively correlated with those of storage roots. Our results provide valuable insight for evaluating the storability of sweetpotato cultivars by analyzing the capabilities of the antioxidative system and the contents of ROS metabolites.
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- 2019
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74. Fast-track care with intraoperative blood salvage in laparoscopic splenectomy
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Jian-wei Wang, Jinhui Zhu, Yan Chen, Zhijiang Wang, Qinghuang Ye, and Weihong Weng
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Adult ,Male ,0301 basic medicine ,medicine.medical_specialty ,Blood transfusion ,media_common.quotation_subject ,medicine.medical_treatment ,Splenectomy ,Blood Loss, Surgical ,lcsh:Medicine ,Article ,Blood Transfusion, Autologous ,03 medical and health sciences ,Postoperative Complications ,0302 clinical medicine ,medicine ,Humans ,lcsh:Science ,Retrospective Studies ,media_common ,Multidisciplinary ,Operative Blood Salvage ,Intraoperative blood salvage ,business.industry ,Convalescence ,lcsh:R ,Retrospective cohort study ,Length of Stay ,Middle Aged ,Surgery ,Treatment Outcome ,030104 developmental biology ,Splenomegaly ,Liver cirrhosis ,Female ,Laparoscopy ,lcsh:Q ,Fast track ,business ,Complication ,030217 neurology & neurosurgery ,Autotransfusion - Abstract
Fast-track surgery is claimed to reduce medical morbidity, eliminate the hospitalization needs, and shorten the convalescence period. Intraoperative bleeding as the main complication is also the primary cause of conversion from laparoscopic to open splenectomy. Intraoperative blood salvage can reduce transfusion requirements, decrease the conversion rate to open, and promote fast-tracking in laparoscopic splenectomy (LS). From November 2007 through December 2016 we collected medical data of 115 LS patients. There were three groups: 54 patients receiving routine care (we marks them as Group RT), 33 patients with fast-track care (Group FT), and 28 receiving fast-track care receiving intraoperative splenic blood salvage and autotransfusion (Group FT + ISBS). These medical data are comprised of included three phases (pre-, intra-, and postoperative). There were significant differences (P
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- 2019
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75. Role of Berberine in the Treatment of Methicillin-Resistant Staphylococcus aureus Infections
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Chu, Ming, Zhang, Ming-bo, Liu, Yan-chen, Kang, Jia-rui, Chu, Zheng-yun, Yin, Kai-lin, Ding, Ling-yu, Ding, Ran, Xiao, Rong-xin, Yin, Yi-nan, Liu, Xiao-yan, and Wang, Yue-dan
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- 2016
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76. MicroRNA-513b-5p targets COL1A1 and COL1A2 associated with the formation and rupture of intracranial aneurysm
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Qiong Cheng, Zheng Zheng, Yan Chen, Yin-zhou Wang, and Yongkun Li
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0301 basic medicine ,musculoskeletal diseases ,Adult ,Male ,Programmed cell death ,MMP3 ,congenital, hereditary, and neonatal diseases and abnormalities ,Cell biology ,MMP2 ,Molecular biology ,Science ,Myocytes, Smooth Muscle ,Gene Expression ,macromolecular substances ,MMP9 ,Aneurysm, Ruptured ,Article ,Collagen Type I ,Cell Line ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,microRNA ,Genetics ,Gene silencing ,Humans ,skin and connective tissue diseases ,Genetic Association Studies ,Aged ,Aged, 80 and over ,Multidisciplinary ,integumentary system ,Cell growth ,Chemistry ,Intracranial Aneurysm ,Middle Aged ,Collagen Type I, alpha 1 Chain ,MicroRNAs ,030104 developmental biology ,Apoptosis ,Cancer research ,Medicine ,Female ,030217 neurology & neurosurgery ,Biomarkers - Abstract
Collagen-type I alpha 1 chain (COL1A1) and COL1A2 are abnormally expressed in intracranial aneurysm (IA), but their mechanism of action remains unclear. This study was performed to investigate the mechanism of COL1A1 and COL1A2 affecting the occurrence and rupture of IA. Quantitative real-time polymerase chain reaction was used to measure the expression of hsa-miR-513b-5p, COL1A1, COL1A2, TNF-α, IL-6, MMP2, MMP3, MMP9 and TIMP4 in patients with ruptured IA (RA) (n = 100), patients with un-ruptured IA (UA) (n = 100), and controls (n = 100). Then, human vascular smooth muscle cells (HASMCs) were cultured, and dual luciferase reporter assay was performed to analyse the targeting relationship between miR-513b-5p and COL1A1 or COL1A2. The effects of the miR-513b-5p mimic and inhibitor on the proliferation, apoptosis, and death of HASMC and the RIP1-RIP3-MLKL and matrix metalloproteinase pathways were also explored. The effect of silencing and over-expression of COL1A1 and COL1A2 on the role of miR-513b-5p were also evaluated. Finally, the effects of TNF-α on miR-513b-5p targeting COL1A1 and COL1A2 were tested. Compared with those in the control group, the serum mRNA levels of miR-513b-5p, IL-6 and TIMP4 were significantly decreased in the RA and UA groups, but COL1A1, COL1A2, TNF-α, IL-1β, MMP2, MMP3 and MMP9 were significantly increased (p p
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- 2021
77. Delayed elimination communication on the prevalence of children's bladder and bowel dysfunction
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Jennifer D Sihoe, Jing Yang, Yu Lin He, Yi Bo Wen, Qingwei Wang, Lin Gang Cui, Peng Chao Xu, Israel Franco, Jing He Lang, Yi He Wang, Xi Zheng Wang, Yan Wang, Qingjun Meng, Jianguo Wen, and Yan Chen
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Male ,Pediatrics ,medicine.medical_specialty ,China ,Early introduction ,Disease prevention ,Neurogenic bladder ,Cross-sectional study ,media_common.quotation_subject ,Science ,Urinary Bladder ,030232 urology & nephrology ,Urinary incontinence ,Urination ,Article ,03 medical and health sciences ,0302 clinical medicine ,030225 pediatrics ,Prevalence ,Medicine ,Weaning ,Humans ,Child ,Defecation ,Gastrointestinal diseases ,Elimination communication ,media_common ,Urinary tract infection ,Multidisciplinary ,business.industry ,Communication ,Paediatrics ,Health policy ,Bowel dysfunction ,Intestines ,Urinary tract obstruction ,Cross-Sectional Studies ,Risk factors ,Child, Preschool ,Lower prevalence ,Female ,business ,Bladder disease - Abstract
To determine the prevalence of bladder and bowel dysfunction (BBD) and its relationship with delayed elimination communication (EC) in children. A cross-sectional study was carried out in kindergartens and primary schools in mainland China. A total of 10,166 children ranging from 4 to 10 years old were included. A total of 10,166 valid questionnaires were collected, and 409 children were diagnosed with BBD. The overall prevalence was 4.02% (409/10,166) and decreased with age, from 6.19% at age 4 to 1.96% at age 10. With the prolonged use of disposable diapers (DDs), the commencement of usage of EC in a child was significantly put off or delayed by parents, and the prevalence of BBD amongst these children increased (P
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- 2021
78. Functional characteristics of a novel odorant binding protein in the legume pod borer, Maruca vitrata
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Yuan Yuan, Hui Ai, Yan Chen, Shaopei Huang, Guangyan Long, and Yuying Liu
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0106 biological sciences ,media_common.quotation_subject ,Science ,Gene Expression ,Insect ,Molecular Dynamics Simulation ,Moths ,Receptors, Odorant ,01 natural sciences ,Biochemistry ,Article ,03 medical and health sciences ,Structure-Activity Relationship ,Animals ,Semiochemical ,Gene ,Legume ,Phylogeny ,030304 developmental biology ,media_common ,0303 health sciences ,Volatile Organic Compounds ,Multidisciplinary ,biology ,Molecular Structure ,Host (biology) ,fungi ,Biological techniques ,Fabaceae ,Sequence Analysis, DNA ,biology.organism_classification ,Recombinant Proteins ,Molecular Docking Simulation ,010602 entomology ,Maruca vitrata ,Odorants ,Odorant-binding protein ,biology.protein ,Medicine ,Insect Proteins ,PEST analysis ,Zoology ,Protein Binding ,Biotechnology - Abstract
Insect olfaction system plays a key role in the foraging food, pollination, mating, oviposition, reproduction and other insect physiological behavior. Odorant binding protein are widely found in the various olfactory sensilla of different insect antennae and involved in chemical signals discrimination from natural environment. In this study, a novel OBP gene, MvitOBP3 is identified from the legume pod borer, Maruca vitrata, which it mainly harms important legume vegetables including cowpea, soybean and lablab bean. Real-time PCR results demonstrated that MvitOBP3 gene was abundantly expressed in the antennal tissue of M. vitrata, while low levels were distributed in the head, thorax, abdomen, leg and wing of adult moths. The recombinant OBP3 protein was purified using the prokaryotic expression and affinity chromatography system. Fluorescence competitive binding experiments indicated that that MvitOBP3 protein exhibited greater binding affinities with host-plant flower volatiles including Butanoic acid butyl ester, Limonene, 1H-indol-4-ol and 2-methyl-3-phenylpropanal, highlighting they may have attractant activities for the oviposition of female moths on the legume vegetables. Moreover, protein homology modeling and molecular docking analysis revealed that there are six amino acid sites of MvitOBP3 involved in the binding of the host-plant volatiles. These findings will further promote to understand the key role of odorant binding protein during host perception and oviposition of M. vitrata moths, which improve the efficiency of semiochemical-based prevention and monitoring for this pest in the legume vegetables field.
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- 2021
79. Highly efficient reusable superhydrophobic sponge prepared by a facile, simple and cost effective biomimetic bonding method for oil absorption
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Miaomiao Cai, Jiaqi Wang, Qian Shi, Qinyao Xu, Yan Chen, and Junkai Gao
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Materials science ,Pollution remediation ,Science ,02 engineering and technology ,Raw material ,010402 general chemistry ,01 natural sciences ,Article ,Contact angle ,chemistry.chemical_compound ,Polyurethane ,Composites ,Multidisciplinary ,biology ,Polyethylene ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Environmentally friendly ,0104 chemical sciences ,Sponge ,chemistry ,Polymerization ,Chemical engineering ,Medicine ,0210 nano-technology ,Melamine - Abstract
Superhydrophobic sponges have considerable potential for oil/water separation. Most of the methods used for superhydrophobic modification of sponges require toxic or harmful solvents, which have the drawbacks of hazardous to environment, expensive, and complex to utilize. Moreover, the hydrophobic layer on the surface of sponge is often easily destroyed. In this paper, a highly efficient superhydrophobic sponge with excellent reusability was developed by using a facile, simple and environmentally friendly dopamine biomimetic bonding method. Different types of sponges, such as melamine, polyethylene or polyurethane sponge wastes, were used as raw materials to prepare superhydrophobic sponges, which possess the advantages of inexpensive and abundant. The effects of different dopamine polymerization time and different hydrophobic agent dosage on the hydrophobicity and oil absorption capacity of melamine sponges were optimized. The study results showed that the water contact angle of the superhydrophobic sponge could reach 153° with excellent organic solvent absorption capacity of 165.9 g/g. Furthermore, the superhydrophobic sponge retained approximately 92.1% of its initial absorption capacity after 35 reutilization cycles. More importantly, the dopamine biomimetic bonding superhydrophobic modification method can be used for different types of sponges. Therefore, a universally applicable, facile, simple and environmentally friendly superhydrophobic modification method for sponges was developed.
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- 2021
80. Effect of straw biochar amendment on tobacco growth, soil properties, and rhizosphere bacterial communities
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Yan-Chen Dai, Lin Gao, Guoming Shen, Jiaming Gao, Fanyu Kong, Jixu Zhang, Jiayu Zheng, Rui Wang, Jiguang Zhang, and Wei Li
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Soil test ,Science ,complex mixtures ,Plant Roots ,Microbiology ,Article ,Environmental impact ,Soil ,Nutrient ,Soil pH ,Biochar ,Tobacco ,Ecosystem ,Soil Microbiology ,Rhizosphere ,Multidisciplinary ,Bacteria ,Chemistry ,Microbiota ,Straw ,Soil conditioner ,Environmental sciences ,Agronomy ,Charcoal ,Soil water ,Environmental chemistry ,Medicine - Abstract
Biochar is an effective soil conditioner. However, we have limited understanding of biochar effects on the tobacco growth and bacterial communities in rhizosphere. The aim of this study was to investigate the effects of different straw biochar amendment (0, 2, 10, and 50 g/kg dry soil) on tobacco growth, soil properties, and bacterial communities in rhizosphere by pot trials. Most of tobacco agronomic traits increased when the application rate varied from 0 to 10 g/kg, but were inhibited by 50 g/kg of biochar application. Soil pH, SOC, available nutrients and soil urease, invertase, and acid phosphatase activities were all increased with the biochar application, whereas catalase activity decreased or remained unchanged. The OTUs and bacterial community diversity indices differed with the biochar application doses in rhizosphere and non-rhizosphere soils. And significant differences in bacterial communities were found between the rhizosphere and non-rhizosphere soils despite the biochar addition. Firmicutes, Proteobacteria, Acidobacteria, Bacteroidetes, and Actinobacteria were the dominant phyla in all soil samples, but they had different abundances in different treatment influenced by the rhizosphere and biochar effect. The high dose of biochar (50 g/kg) decreased the similarity of soil bacterial community structure in rhizosphere compared with those in non-rhizosphere soil. These results provide a better understanding of the microecological benefits of straw biochar in tobacco ecosystem.
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- 2021
81. Transcriptome profiling analysis of muscle tissue reveals potential candidate genes affecting water holding capacity in Chinese Simmental beef cattle
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Lingyang Xu, Xinghai Duan, Bingxing An, Lupei Zhang, Mang Liang, Lili Du, Huijiang Gao, Wentao Cai, Tianpeng Chang, Yan Chen, Bo Zhu, Junya Li, and Xue Gao
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0301 basic medicine ,Candidate gene ,China ,Meat ,Molecular biology ,Science ,Quantitative trait locus ,Beef cattle ,Biology ,Article ,Transcriptome ,03 medical and health sciences ,Genetics ,Animals ,Gene Regulatory Networks ,Food science ,Protein Interaction Maps ,KEGG ,Muscle, Skeletal ,ITGAV ,Gene ,Multidisciplinary ,Sequence Analysis, RNA ,Gene Expression Profiling ,0402 animal and dairy science ,Water ,04 agricultural and veterinary sciences ,040201 dairy & animal science ,Red Meat ,030104 developmental biology ,MYL2 ,Gene Ontology ,Phenotype ,Medicine ,Cattle ,Signal Transduction - Abstract
Water holding capacity (WHC) is an important sensory attribute that greatly influences meat quality. However, the molecular mechanism that regulates the beef WHC remains to be elucidated. In this study, the longissimus dorsi (LD) muscles of 49 Chinese Simmental beef cattle were measured for meat quality traits and subjected to RNA sequencing. WHC had significant correlation with 35 kg water loss (r = − 0.99, p HSPA12A, HSPA13, PPARγ, MYL2, MYPN, TPI, and ATP2A1) influenced WHC in accordance with previous studies, but also identified ATP2B4, ACTN1, ITGAV, TGFBR1, THBS1, and TEK as the most promising novel candidate genes affecting the WHC. These findings could offer important insight for exploring the molecular mechanism underlying the WHC trait and facilitate the improvement of beef quality.
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- 2021
82. Combined detection of peripheral blood VEGF and inflammation biomarkers to evaluate the clinical response and prognostic prediction of non-operative ESCC
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Ma, Yuanyuan, primary, Su, Xinyu, additional, Li, Xin, additional, Zhi, Xiaohui, additional, Jiang, Kan, additional, Xia, Jianhong, additional, Li, Hongliang, additional, Yan, Chen, additional, and Zhou, Liqing, additional
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- 2021
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83. Silver microsphere doping porous-carbon inspired shape-stable phase change material with excellent thermal properties: preparation, optimization, and mechanism
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Yan Chen, Zheng-Shou Chen, Junwei Zhang, Zeguang Nie, and Junkai Gao
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Energy storage ,Multidisciplinary ,Materials science ,020209 energy ,Doping ,02 engineering and technology ,Polyethylene glycol ,Raw material ,021001 nanoscience & nanotechnology ,Phase-change material ,Article ,GeneralLiterature_MISCELLANEOUS ,chemistry.chemical_compound ,TheoryofComputation_MATHEMATICALLOGICANDFORMALLANGUAGES ,Thermal conductivity ,Solar energy ,chemistry ,Chemical engineering ,Thermal ,PEG ratio ,Hardware_INTEGRATEDCIRCUITS ,0202 electrical engineering, electronic engineering, information engineering ,0210 nano-technology ,Pyrolysis - Abstract
In this study, silver microspheres (SMS) were introduced into cotton stalk porous-carbon (CSP) to prepare silver microsphere doping porous-carbon (SMS-CSP), and then SMS-CSP was used as the matrix of polyethylene glycol (PEG) to synthesize shape-stable phase change material of PEG/SMS-CSP. It was found that the introduction of SMS into CSP could not only greatly improve the loading capacity of the porous-carbon for PEG, but also could increase the thermal conductivity of PEG/SMS-CSP. Additionally, the method of introducing SMS into porous-carbon had the advantages of environmental protection and simple operation. Moreover, the raw material of cotton stalk is a kind of agricultural waste, which has the merits of wide source, low price and easy to obtain. Furthermore, in the preparation of cotton stalk porous-carbon, with the increase of pyrolysis temperature the thermal conductivity of PEG/SMS-CSP could be enhanced significantly. The mechanism about the enhancement of thermal conductivity was clarified, which could provide more basic theory for the study about the thermal conductivity of shape-stable phase change materials (ss-PCMs) based on porous-carbon.
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- 2020
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84. A structural deep network embedding model for predicting associations between miRNA and disease based on molecular association network
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Shen-Jian Song, Lei Wang, Xin Yan, Hai-Yan Chen, Jin-Qian Yu, Zhu-Hong You, and Hao-Yuan Li
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Male ,Lymphoma ,Computer science ,Science ,Feature extraction ,Breast Neoplasms ,Machine learning ,computer.software_genre ,Convolutional neural network ,Cross-validation ,Field (computer science) ,Article ,Semantic similarity ,Classifier (linguistics) ,Humans ,Computational models ,Genetic Predisposition to Disease ,Genetic Association Studies ,Computational model ,Multidisciplinary ,business.industry ,Computational Biology ,Kidney Neoplasms ,Computational biology and bioinformatics ,MicroRNAs ,Feature (computer vision) ,Area Under Curve ,Medicine ,Female ,Artificial intelligence ,Neural Networks, Computer ,business ,computer - Abstract
Previous studies indicated that miRNA plays an important role in human biological processes especially in the field of diseases. However, constrained by biotechnology, only a small part of the miRNA-disease associations has been verified by biological experiment. This impel that more and more researchers pay attention to develop efficient and high-precision computational methods for predicting the potential miRNA-disease associations. Based on the assumption that molecules are related to each other in human physiological processes, we developed a novel structural deep network embedding model (SDNE-MDA) for predicting miRNA-disease association using molecular associations network. Specifically, the SDNE-MDA model first integrating miRNA attribute information by Chao Game Representation (CGR) algorithm and disease attribute information by disease semantic similarity. Secondly, we extract feature by structural deep network embedding from the heterogeneous molecular associations network. Then, a comprehensive feature descriptor is constructed by combining attribute information and behavior information. Finally, Convolutional Neural Network (CNN) is adopted to train and classify these feature descriptors. In the five-fold cross validation experiment, SDNE-MDA achieved AUC of 0.9447 with the prediction accuracy of 87.38% on the HMDD v3.0 dataset. To further verify the performance of SDNE-MDA, we contrasted it with different feature extraction models and classifier models. Moreover, the case studies with three important human diseases, including Breast Neoplasms, Kidney Neoplasms, Lymphoma were implemented by the proposed model. As a result, 47, 46 and 46 out of top-50 predicted disease-related miRNAs have been confirmed by independent databases. These results anticipate that SDNE-MDA would be a reliable computational tool for predicting potential miRNA-disease associations.
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- 2020
85. Copper microsphere hybrid mesoporous carbon as matrix for preparation of shape-stabilized phase change materials with improved thermal properties
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Yan Chen, Junwei Zhang, Yi Liu, Zhi Han, and Junkai Gao
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Thermogravimetric analysis ,Materials science ,Energy storage ,Scanning electron microscope ,020209 energy ,chemistry.chemical_element ,lcsh:Medicine ,02 engineering and technology ,Polyethylene glycol ,Article ,chemistry.chemical_compound ,Differential scanning calorimetry ,immune system diseases ,PEG ratio ,0202 electrical engineering, electronic engineering, information engineering ,Thermal stability ,Fourier transform infrared spectroscopy ,lcsh:Science ,Solar thermal energy ,Multidisciplinary ,lcsh:R ,technology, industry, and agriculture ,021001 nanoscience & nanotechnology ,Copper ,chemistry ,Chemical engineering ,lcsh:Q ,0210 nano-technology - Abstract
Copper microsphere hybrid mesoporous carbon (MPC-Cu) was synthesized by the pyrolysis of polydopamine microspheres doped with copper ions that were prepared using a novel, facile and simple one-step method of dopamine biomimetic polymerization and copper ion adsorption. The resulting MPC-Cu was then used as a supporter for polyethylene glycol (PEG) to synthesize shape-stabilized phase change materials (PEG/MPC-Cu) with enhanced thermal properties. PEG/MPC-Cu was studied by scanning electron microscopy, X-ray diffraction, Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy, thermogravimetric analysis, differential scanning calorimetry and thermal constant analysis. The results demonstrated that the thermal conductivity of PEG/MPC-Cu was 0.502 W/(m K), which increased by 100% compared to pure PEG [0.251 W/(m K)]. The melting enthalpy of PEG/MPC-Cu was 95.98 J/g, indicating that PEG/MPC-Cu is a promising candidate for future thermal energy storage applications. In addition, the characterization results suggested that PEG-MPC-Cu possessed high thermal stability. Therefore, the method developed in this paper for preparing shape-stabilized phase change materials with improved thermal properties has substantial engineering application prospects.
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- 2020
86. Celastrol inhibits ezrin-mediated migration of hepatocellular carcinoma cells
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Jing Wang, Yuan Li, Xing Liu, Juan Cheng, Xiang Gao, Fuhao Chu, Xiaoyu Song, Zeqi Su, Wuzhekai Zeng, Yalei Cao, Shihao Du, Fengsong Wang, Dongmei Wang, Yan Chen, Olanrewaju Ayodeji Durojaye, Xia Ding, Xiaoguang Shi, and Tangshun Wang
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Carcinoma, Hepatocellular ,Cell ,lcsh:Medicine ,Biotin ,Biochemistry ,Article ,Metastasis ,chemistry.chemical_compound ,Ezrin ,Cell Movement ,Catalytic Domain ,medicine ,Humans ,Cell migration ,Neoplasm Invasiveness ,ROCK2 ,Medicine, Chinese Traditional ,Neoplasm Metastasis ,Phosphorylation ,lcsh:Science ,Wound Healing ,rho-Associated Kinases ,Multidisciplinary ,lcsh:R ,Liver Neoplasms ,Cancer ,Hep G2 Cells ,medicine.disease ,Chemical biology ,Triterpenes ,Molecular Docking Simulation ,Cytoskeletal Proteins ,medicine.anatomical_structure ,HEK293 Cells ,chemistry ,Celastrol ,Cancer research ,Disease Progression ,lcsh:Q ,Liver cancer ,Pentacyclic Triterpenes - Abstract
Progression of hepatocellular carcinoma involves multiple genetic and epigenetic alterations that promote cancer invasion and metastasis. Our recent study revealed that hyperphosphorylation of ezrin promotes intrahepatic metastasis in vivo and cell migration in vitro. Celastrol is a natural product from traditional Chinese medicine which has been used in treating liver cancer. However, the mechanism of action underlying celastrol treatment was less clear. Here we show that ROCK2 is a novel target of celastrol and inhibition of ROCK2 suppresses elicited ezrin activation and liver cancer cell migration. Using cell monolayer wound healing, we carried out a phenotype-based screen of natural products and discovered the efficacy of celastrol in inhibiting cell migration. The molecular target of celastrol was identified as ROCK2 using celastrol affinity pull-down assay. Our molecular docking analyses indicated celastrol binds to the active site of ROCK2 kinase. Mechanistically, celastrol inhibits the ROCK2-mediated phosphorylation of ezrin at Thr567 which harnesses liver cancer cell migration. Our findings suggest that targeting ROCK2-ezrin signaling is a potential therapeutic niche for celastrol-based intervention of cancer progression in hepatocellular carcinoma.
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- 2020
87. Effective p-wave Fermi-Fermi Interaction Induced by Bosonic Superfluids
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Zheng Yan, Y. Z. Wu, Yan Chen, Zhi Lin, and Jie Lou
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Atom optics ,Electronic properties and materials ,High Energy Physics::Lattice ,lcsh:Medicine ,Boundary (topology) ,FOS: Physical sciences ,01 natural sciences ,Article ,010305 fluids & plasmas ,Superconducting properties and materials ,Superfluidity ,Condensed Matter - Strongly Correlated Electrons ,Quantum mechanics ,0103 physical sciences ,lcsh:Science ,010306 general physics ,Boson ,Physics ,Condensed Matter::Quantum Gases ,Quantum Physics ,Multidisciplinary ,Strongly Correlated Electrons (cond-mat.str-el) ,lcsh:R ,Bose-Einstein condensates ,Fermion ,State (functional analysis) ,Square lattice ,Composite fermion ,lcsh:Q ,Quantum Physics (quant-ph) ,Fermi Gamma-ray Space Telescope - Abstract
We study the two-dimensional Bose-Fermi mixture on square lattice at finite temperature by using the determinant quantum Monte Carlo method within the weakly interacting regime. Here we consider the attractive Bose-Hubbard model and free spinless fermions. In the absence of boson-fermion interactions, we obtain the boundary of the collapsed state of the attractive bosons. In the presence of boson-fermion interactions, an effective p-wave interaction between fermions will be induced as far as the bosons are in a superfluid state. Moreover, we find the emergence of the composite fermion pairs at low temperatures.
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- 2020
88. Delayed application of silver nanoparticles reveals the role of early inflammation in burn wound healing
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Chun-Nam Lok, Kangjun Zhang, Yan Chen, Kenneth K. Y. Wong, and Vincent C.H. Lui
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Male ,0301 basic medicine ,Burn injury ,Fibroblast Growth Factor 7 ,Silver ,p38 mitogen-activated protein kinases ,medicine.medical_treatment ,Metal Nanoparticles ,lcsh:Medicine ,Inflammation ,Pharmacology ,p38 Mitogen-Activated Protein Kinases ,Article ,Silver nanoparticle ,Mice ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Animals ,Smad3 Protein ,lcsh:Science ,Wound Healing ,Multidisciplinary ,Burn wound ,Interleukin-6 ,business.industry ,lcsh:R ,Translational research ,medicine.disease ,Experimental models of disease ,Mice, Inbred C57BL ,030104 developmental biology ,Cytokine ,030220 oncology & carcinogenesis ,lcsh:Q ,medicine.symptom ,Burns ,business ,Wound healing ,Infiltration (medical) ,Signal Transduction - Abstract
Burn injury is common, and antimicrobial agents are often applied immediately to prevent wound infection and excessive inflammatory response. Although inflammation is essential for clearing bacteria and creating an environment conducive to the healing process, it is unclear what time-frame inflammation should be present for optimal wound healing. This study critically investigated the role of early inflammation in burn wound healing, and also revealed the molecular mechanisms underlying the pro-healing effects of silver nanoparticles (AgNPs). We created a burn injury mouse model using wild-type and Smad3−/− mice, which were topically treated with AgNPs at different post-burn days, and examined the healing processes of the various groups. We also delineated the molecular pathways underlying the anti-inflammation and pro-healing effects of AgNPs by morphological and histological analysis, immuno-histochemistry, and western blotting. Our results showed that (1) AgNPs regulated pro-inflammatory cytokine IL-6 production of keratinocytes and neutrophils infiltration through KGF-2/p38 signaling pathway, (2) Topical AgNPs treatment immediately after burn injury significantly supressed early inflammation but resulted in delayed healing, (3) A short delay in AgNPs application (post-burn day 3 in our model) allowed early inflammation in a controlled manner, and led to optimal burn wound healing. Thus, our current study showed that some degree of early inflammation was beneficial, but prolonged inflammation was detrimental for burn wound healing. Further evaluation and clinical translation of this finding is warranted.
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- 2020
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89. Cloning and characterization of two chlorophyll A/B binding protein genes and analysis of their gene family in Camellia sinensis
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Chu-Yan Chen, Xiao-Nan Mao, Yu-Lin Zhu, Ting-Ting Ye, Fang Du, Xiang-Yong Li, Xian-Wen Li, and Geng Zhijuan
- Subjects
0106 biological sciences ,0301 basic medicine ,Models, Molecular ,Subfamily ,Plant molecular biology ,Protein Conformation ,lcsh:Medicine ,Biology ,Genes, Plant ,01 natural sciences ,Genome ,Article ,Camellia sinensis ,Photosystem II ,Transcriptome ,03 medical and health sciences ,Structure-Activity Relationship ,Gene Expression Regulation, Plant ,Gene family ,Cloning, Molecular ,Photosynthesis ,lcsh:Science ,Transcriptomics ,Gene ,Phylogeny ,Cloning ,Regulation of gene expression ,Multidisciplinary ,Gene Expression Profiling ,lcsh:R ,fungi ,food and beverages ,Gene expression profiling ,030104 developmental biology ,Biochemistry ,Plant stress responses ,Multigene Family ,lcsh:Q ,Chlorophyll Binding Proteins ,010606 plant biology & botany - Abstract
In this study, two chlorophyll A/B binding protein (CAB) genes (CsCP1 and CsCP2) in tea plant were cloned. The proteins encoded by these genes belong to the external or internal antenna proteins of PS II, respectively. They may be the targets of physiological regulation for tea leaf cell PS II because they all contain multiple functional domains and modifiable sites. The CAB gene family in the tea genome consists of 25 homologous genes. We measured the expression patterns of ten genes in the CsCP1 and CsCP2 subfamily under six different stresses. CsCP1 expression was inhibited in response to 6 kinds of stress; CsCP2 expression was slightly upregulated only after cold stress and ABA treatment. However, the expression levels of CSA016997 and CSA030476 were upregulated significantly in the six stresses. The results suggested that the 10 CAB genes may have different functions in tea leaves. Moreover, changes in the expression of the 10 genes under stress appear to be related to ABA- and MeJA-dependent signalling pathways, and their responses to MeJA treatment is faster than those to ABA. In addition, we introduced our experiences for cloning the genes in the context of complex genomes.
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- 2020
90. Generalized Haldane models on laser-coupling optical lattices
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Zheng Wang, Wanli Liu, Yan Chen, and Zhi Lin
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Coupling ,Physics ,Multidisciplinary ,Science ,01 natural sciences ,Article ,Semimetal ,Magnetic flux ,Spectral line ,010305 fluids & plasmas ,Theoretical physics ,Simple (abstract algebra) ,Topological insulator ,0103 physical sciences ,Medicine ,Condensed Matter::Strongly Correlated Electrons ,010306 general physics ,Realization (systems) ,Phase diagram - Abstract
We propose two generalized Haldane models on laser-coupling optical lattices. Laser-assisted nearest neighbour tunnelings generate artificial staggered magnetic flux, facilitating the realization of topological nontrivial band structures. As generalizations of Haldane model, these models support topological insulator and semimetal phases featuring high Chern numbers. We show simple rules for computing Chern numbers of our models and display the phase diagrams. Moreover, numerical calculations of energy spectra are in perfect agreement with our theoretical expectations. Our models may serve as two new family members for generalizing Haldane model on optical lattices.
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- 2018
91. Application of a dye-based mitochondrion-thermometry to determine the receptor downstream of prostaglandin E2 involved in the regulation of hepatocyte metabolism
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Lei Shen, Jian-Sheng Kang, Tao-Rong Xie, Run-Zhou Yang, and Yan Chen
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0301 basic medicine ,medicine.medical_treatment ,Prostaglandin E2 receptor ,EP4 Receptor ,lcsh:Medicine ,Mitochondrion ,010402 general chemistry ,01 natural sciences ,03 medical and health sciences ,medicine ,Prostaglandin E2 ,Receptor ,lcsh:Science ,Multidisciplinary ,Chemistry ,lcsh:R ,0104 chemical sciences ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,Hepatocyte ,lipids (amino acids, peptides, and proteins) ,lcsh:Q ,Intracellular ,Prostaglandin E ,medicine.drug - Abstract
Temperature distributions inside a living cell reflect the thermodynamics and functions of cellular components. We used a newly-developed method of mitochondrial thermometry based on Rhodamine B methyl ester, which equilibrates as a thermosensitive mixture of nonfluorescent and fluorescent resonance forms. Prostaglandin E2 (PGE2) is released from hepatic non-parenchymal Kupffer cells and acts as an inflammatory factor to impact various functions of hepatocytes. The activity of PGE2 on energy mechanism of hepatocytes has not been fully elucidated and in particular, which PGE2 receptor mediates the functions has been elusive. We identified EP4 as the major receptor of PGE2 via our mitochondrion-thermometry approach and then substantiated this receptor’s role in hepatic metabolism. We discovered that PGE2 is able to decrease intracellular temperature of hepatocytes, via increasing some lipogenic genes’ expressions, hampering lipolysis and mitochondrial β-oxidation, reducing intracellular ATP level and elevating cAMP level through EP4 receptor. The redox status of hepatocytes represented by FAD vs FAD + NADH ratio is influenced by PGE2 in an EP4 receptor-dependent manner. Collectively, these data demonstrate that PGE2 regulates metabolism of hepatocytes mainly through EP4 receptor.
- Published
- 2018
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92. MicroRNA 375 modulates hyperglycemia-induced enteric glial cell apoptosis and Diabetes-induced gastrointestinal dysfunction by targeting Pdk1 and repressing PI3K/Akt pathway
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Kun Yang, Li Zhang, Gong-Xiang Liu, Jin-Qiu Zhou, Yan Chen, Huan Yu, Hua-Tian Gan, and Fuqian He
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Male ,0301 basic medicine ,Diabetic neuropathy ,Gastrointestinal Diseases ,Cell ,lcsh:Medicine ,Apoptosis ,Protein Serine-Threonine Kinases ,Article ,Diabetes Mellitus, Experimental ,Mice ,Phosphatidylinositol 3-Kinases ,03 medical and health sciences ,In vivo ,microRNA ,Animals ,Medicine ,lcsh:Science ,PI3K/AKT/mTOR pathway ,Myenteric plexus ,Multidisciplinary ,business.industry ,lcsh:R ,Pyruvate Dehydrogenase Acetyl-Transferring Kinase ,medicine.disease ,Mice, Inbred C57BL ,030104 developmental biology ,medicine.anatomical_structure ,Hyperglycemia ,Cancer research ,Enteric nervous system ,lcsh:Q ,business ,Proto-Oncogene Proteins c-akt - Abstract
Diabetic neuropathy can damage systemic nervous system, including alteration of enteric nervous system and subsequent gastrointestinal dysfunction. The effect of diabetes on enteric glia cell (EGC) is not clear. We investigated the effect of diabetes and hyperglycemia on EGC, and the role of microRNA375 in modulating EGC survival in vivo and in vitro. Streptozotocin-induced diabetic mice were intraperitoneally injected with microRNA375 inhibitor or its negative control. EGC was transfected with microRNA375 inhibitor or its mimic. Diabetes mice with gastrointestinal dysfunction showed increased apoptosis of EGC (no difference in cell numbers) and gene expression of micorRNA375 in the myenteric plexus. Hyperglycemia triggered apoptosis of EGC in vitro with decreased expression of Pdk1 and p-Akt, but increased expression of micorRNA375. MicorRNA375 mimic induced apoptosis of EGC in vitro with repressed Pdk1and p-Akt. MicorRNA375 inhibitor could both prevent hyperglycemia-induced apoptosis of EGC in vitro and diabetes-induced gastrointestinal dysfunction in vivo. Our results suggest that diabetes-induced gastrointestinal dysfunction is related to increased apoptosis of EGC in the myenteric plexus. Hyperglycemia can increase the expression of microRNA375 and damage EGC survival through PI3K/Akt pathway. MicroRNA375 specific inhibition can prevent hyperglycemia induced EGC damage and diabetes-induced gastrointestinal dysfunction.
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- 2018
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93. A tightly regulated IL-22 response maintains immune functions and homeostasis in systemic viral infection
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Yan Chen, Panpan Yi, Yingzi Cong, Xuegong Fan, Yuejin Liang, Zakari Kwota, Zuliang Jie, Denley Ming Kee Yuan, and Jiaren Sun
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0301 basic medicine ,T-Lymphocytes ,T cell ,Science ,mTORC1 ,Biology ,Article ,Interleukin 22 ,Mice ,Phosphatidylinositol 3-Kinases ,03 medical and health sciences ,Immune system ,medicine ,Animals ,Homeostasis ,PI3K/AKT/mTOR pathway ,Tissue homeostasis ,Multidisciplinary ,Interleukins ,TOR Serine-Threonine Kinases ,Innate lymphoid cell ,Receptors, Antigen, T-Cell, gamma-delta ,3. Good health ,030104 developmental biology ,medicine.anatomical_structure ,Lymphatic system ,Virus Diseases ,Host-Pathogen Interactions ,Immunology ,Medicine ,Signal Transduction - Abstract
Interleukin-22 (IL-22) plays an important role in host immunity and tissue homeostasis in infectious and inflammatory diseases. However, the function and regulation of IL-22 in viral infection remain largely unknown. Here, we report that viral infection triggered early IL-22 production from the liver and lymphoid organs. γδ T cells are the main immune cells to produce IL-22 in the liver, a process mediated by the IL-23/phosphoinositide 3-kinase (PI3K)/mammalian target of rapamycin complex 1 (mTORC1) signaling pathway. In the presence of IL-23, IL-22 production is independent of aryl hydrocarbon receptor (AhR) signaling. In acute and persistent viral infections, IL-22 deficiency resulted in thymic and splenic hypertrophy, while excessive IL-22 induced atrophy in these lymphoid organs. Moreover, IL-22 deficiency enhanced T cell responses to promote viral clearance, but increased IL-22 in vivo decreased T cell numbers and functions in the liver and lymphoid tissues. Together, our findings reveal a significant effect of the IL-23/PI3K/mTORC1 axis on regulating IL-22 production and also identify a novel role of IL-22 in controlling antiviral T cell responses in the non-lymphoid and lymphoid organs during acute and persistent viral infections.
- Published
- 2017
94. Two-dimensional Tunable Dirac/Weyl Semimetal in Non-Abelian Gauge Field
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Zhi Lin, Yaowu Guo, Jie Lou, Yan Chen, and Jia-Qiang Zhao
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Point reflection ,lcsh:Medicine ,Weyl semimetal ,02 engineering and technology ,Computer Science::Digital Libraries ,01 natural sciences ,Article ,Superconducting properties and materials ,symbols.namesake ,Ultracold atom ,Quantum mechanics ,0103 physical sciences ,Gauge theory ,lcsh:Science ,010306 general physics ,Topological matter ,Physics ,Multidisciplinary ,Zeeman effect ,lcsh:R ,Fermi energy ,021001 nanoscience & nanotechnology ,Geometric phase ,Computer Science::Mathematical Software ,symbols ,lcsh:Q ,0210 nano-technology ,Fermi Gamma-ray Space Telescope - Abstract
Three-dimensional(3D) Weyl semimetal(WSM) with linear energy spectra has attracted significant interest. Especially they have been observed experimentally in several solid materials with the breaking of inversion symmetry. Here we predict a new family of particle-hole($${\mathscr{C}}$$ C ) invariant 2D WSMs in the non-Abelian gauge field, which can emerge in the low energy bands being close to Fermi energy (dubbed Weyl-I) and the high energy bands being away from Fermi energy (dubbed Weyl-II), only when the time-reversal symmetry($${\mathscr{T}}$$ T ) of the 2D Dirac semimetal is broken in the presence of in-plane Zeeman fields. Moreover, a 2D Dirac node can split into a pair of Weyl nodes showing the same Berry phase, and the 2D WSM, being protected by $${\mathscr{T}}$$ T symmetry, exhibits four Weyl-I nodes, whose energies are invariant with the variation of the magnetic field. The corresponding Fermi velocity and Berry connection have been calculated. Based on the 2D WSMs, we also examine inhomogeneous pairings of attractive Fermi gases and find a new kind of the LO states with the beat frequency. This 2D WSM provides a realistic and promising platform for exploring and manipulating exotic Weyl physics, which may increase the experimental feasibility in the context of ultracold atoms.
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- 2019
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95. Genomic Patterns of Homozygosity in Chinese Local Cattle
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Guoyao Zhao, Lupei Zhang, Yan Chen, Lingyang Xu, Xue Gao, Junya Li, George E. Liu, Bo Zhu, Huijiang Gao, and Liu Yang
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0301 basic medicine ,Linkage disequilibrium ,China ,Genotype ,Population ,lcsh:Medicine ,Single-nucleotide polymorphism ,Runs of Homozygosity ,Biology ,Breeding ,Polymorphism, Single Nucleotide ,Article ,Linkage Disequilibrium ,03 medical and health sciences ,Polymorphism (computer science) ,Animals ,lcsh:Science ,education ,Animal breeding ,Genetics ,education.field_of_study ,Multidisciplinary ,Genome ,lcsh:R ,Haplotype ,Homozygote ,0402 animal and dairy science ,04 agricultural and veterinary sciences ,Genomics ,040201 dairy & animal science ,Breed ,030104 developmental biology ,Genetics, Population ,Phenotype ,lcsh:Q ,Cattle ,Genome-Wide Association Study - Abstract
Genome-wide single nucleotide polymorphism (SNP) arrays can be used to explore homozygosity segments, where two haplotypes inherited from the parents are identical. In this study, we identified a total of 27,358 runs of homozygosity (ROH) with an average of 153 ROH events per animal in Chinese local cattle. The sizes of ROH events varied considerably ranging from 0.5 to 66 Mb, with an average length of 1.22 Mb. The highest average proportion of the genome covered by ROH (~11.54% of the cattle genome) was found in Nanda cattle (NDC) from South China, whereas the lowest average proportion (~3.1%) was observed in Yanhuang cattle (YHC). The average estimated FROH ranged from 0.03 in YHC to 0.12 in NDC. For each of three ROH classes with different sizes (Small 0.5–1 Mb, Medium 1–5 Mb and Large >5 Mb), the numbers and total lengths of ROH per individual showed considerable differences across breeds. Moreover, we obtained 993 to 3603 ROH hotspots (which were defined where ROH frequency at a SNP within each breed exceeded the 1% threshold) among eight cattle breeds. Our results also revealed several candidate genes embedded with ROH hotspots which may be related to environmental conditions and local adaptation. In conclusion, we generated baselines for homozygosity patterns in diverse Chinese cattle breeds. Our results suggested that selection has, at least partially, played a role with other factors in shaping the genomic patterns of ROH in Chinese local cattle and might provide valuable insights for understanding the genetic basis of economic and adaptive traits.
- Published
- 2019
96. Comparison study between mesoporous silica nanoscale microsphere and active carbon used as the matrix of shape-stabilized phase change material
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Zhi Han, Yan Chen, Xi Tang, Zijun Zhang, Yi Liu, and Jingxing Wang
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Multidisciplinary ,Materials science ,Energy storage ,Energy ,020209 energy ,lcsh:R ,lcsh:Medicine ,02 engineering and technology ,Mesoporous silica ,021001 nanoscience & nanotechnology ,Phase-change material ,Article ,law.invention ,Chemical engineering ,law ,Specific surface area ,0202 electrical engineering, electronic engineering, information engineering ,Molecule ,lcsh:Q ,Thermal stability ,Crystallization ,lcsh:Science ,0210 nano-technology ,Porosity ,Nanoscopic scale - Abstract
Mesoporous silica nanoscale microsphere (MSNM), with a special morphology, high porosity, large pore volume and specific surface area, was successfully prepared and used as the matrix material of lauric acid (LA) to prepare a favorable shape-stabilized phase change material (LA/MSNM). The porous network structure of MSNM is effective to prevent the leakage and enhance the thermal stability of LA/MSNM. For comparison, shape-stabilized phase change material of LA/AC, which contained commercially purchased active carbon (AC) and LA, was prepared by the same method. Characterizations of LA/MSNM and LA/AC, such as chemical properties, structure, thermal properties and crystallization properties were studied. The mechanisms of interaction between LA molecules and MSNM or AC were explicated. The results of TGA test showed that the LA/MSNM and LA/AC had superior thermal stability, and however, the melting and solidification enthalpies of LA/MSNM were much higher than that of LA/AC, which was attributed that the loading capacity of MSNM was better than that of LA/AC. All of the study results demonstrated that the mesoporous silica nanoscale microspheres of MSNM synthesized in this study possessed the potential for practical applications as a suitable supporter of organic phase change materials.
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- 2019
97. A species-specific miRNA participates in biomineralization by targeting CDS regions of Prisilkin-39 and ACCBP in Pinctada fucata
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Liping Xie, Yan Chen, Xuejing Zhu, Rongqing Zhang, Zhen Zhang, and Shuyan Zhao
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Biomineralization ,Molecular biology ,lcsh:Medicine ,Article ,Negative regulator ,Species Specificity ,In vivo ,Animal Shells ,microRNA ,Animals ,Pinctada fucata ,Pinctada ,lcsh:Science ,Nacre ,Gene ,Reporter gene ,Extracellular Matrix Proteins ,Multidisciplinary ,biology ,Chemistry ,lcsh:R ,Gene Expression Regulation, Developmental ,biology.organism_classification ,In vitro ,Cell biology ,MicroRNAs ,Genetic Code ,lcsh:Q ,Zoology ,Protein Binding - Abstract
Biomineralization is a sophisticated biological process precisely regulated by multiple molecules and pathways. Accumulating miRNAs have been identified in invertebrates but their functions in biomineralization are poorly studied. Here, an oyster species-specific miRNA, novel_miR_1 was found to regulate biomineralization in Pinctada fucata. Target prediction showed that novel_miR_1 could target Prisilkin-39 and ACCBP by binding to their coding sequences (CDS). Tissue distribution analysis revealed that the expression level of novel_miR_1 was highest in the mantle, which was a key tissue participating in biomineralization. Gain-of-function assay in vivo showed that biomineralization-related genes including Prisilkin-39 and ACCBP were down-regulated and shell inner surfaces of both prismatic and nacreous layer were disrupted after the over-expression of novel_miR_1, indicating its dual roles in biomineralization. Furthermore, the shell notching results indicated that novel_miR_1 was involved in shell regeneration. Dual-luciferase reporter assay in vitro demonstrated that novel_miR_1 directly suppressed Prisilkin-39 and ACCBP genes by binding to the CDS regions. Taken together, these results suggest that novel_miR_1 is a direct negative regulator to Prisilkin-39 and ACCBP and plays an indispensable and important role in biomineralization in both prismatic and nacreous layer of P. fucata.
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- 2019
98. Microbiota and metabolome responses in the cecum and serum of broiler chickens fed with plant essential oils or virginiamycin
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Tianyue Xu, Nianhua Zhu, Longfei Yu, Jun Wang, and Yan Chen
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0301 basic medicine ,Serum ,Rikenellaceae ,030106 microbiology ,lcsh:Medicine ,Microbial communities ,Virginiamycin ,Microbiology ,Poultry ,Article ,03 medical and health sciences ,Lactobacillus ,RNA, Ribosomal, 16S ,Metabolome ,Oils, Volatile ,Animals ,Plant Oils ,KEGG ,Alistipes ,lcsh:Science ,Cecum ,Multidisciplinary ,biology ,Microbiota ,Lachnospiraceae ,lcsh:R ,biology.organism_classification ,Animal Feed ,Gastrointestinal Microbiome ,030104 developmental biology ,Biochemistry ,Dietary Supplements ,lcsh:Q ,Animal Nutritional Physiological Phenomena ,Roseburia ,Bacteroides ,Chickens - Abstract
This study investigated the cecal microbiota and serum metabolite profile of chickens fed with plant essential oils (PEO) or virginiamycin (VIRG) using high-throughput 16S rRNA gene sequencing and untargeted metabolomics approach. The main aim of this work was to explore the biochemical mechanisms involved in the improved growth performance of antibiotics and their alternatives in animal production. The results showed that both PEO and VIRG treatment significantly increased the relative abundance of phyla Bacteroidetes and decreased the abundance of phyla Firmicutes and genus of Lactobacillus in cecal microbiota of chickens. Compared to the control group (CT group), the relative abundance of genus of Alistipes, unclassified Rikenellaceae, Roseburia, and Anaeroplasma was enriched in the PEO group; that of genus Bacteroides, Lachnospiraceae, and unclassified Enterobacteriaceae was enriched in the cecal microbiota of the VIRG group. Untargeted metabolomics analyses revealed that the PEO treatment modified 102 metabolites and 3 KEGG pathways (primary bile acid biosynthesis and phenylalanine metabolism) in the cecal microbiota, and 81 metabolites and relevant KEGG pathways (fructose and mannose metabolism, biosynthesis of unsaturated fatty acids, and linoleic acid.) in the serum of the chicken. Compared to the CT group, VIRG treatment group differed 217 metabolites and 10 KEGG pathways in cecal contents and 142 metabolites and 7 KEGG pathways in serum of chickens. Pearson’s correlation analysis showed that phyla Bacteroidetes and genus of Bacteroides, Alistipes, and unclassified Rikenellaceae (in the VIRG and PE group) were positively correlated with many lipid metabolites. However, phyla Firmicutes and genera Lactobacillus (higher in the CT group) were negatively correlated with the lipid and thymine metabolism, and positively correlated with hydroxyisocaproic acid, cytosine, and taurine. This study shows that dietary supplementation with PEO and VIRG altered the composition and metabolism profile of the cecal microbiota, modified the serum metabolism profile.
- Published
- 2019
99. Spatio-temporal variations and factors of a provincial PM2.5 pollution in eastern China during 2013–2017 by geostatistics
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Dan Zhang, Xue Sun, Xiao-San Luo, Yan Chen, Zhen Zhao, Qi Chen, Lichun Wu, and Xu Jiangbing
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0301 basic medicine ,Pollutant ,Pollution ,Multidisciplinary ,media_common.quotation_subject ,lcsh:R ,Air pollution ,lcsh:Medicine ,Geostatistics ,medicine.disease_cause ,Monsoon ,Article ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Urbanization ,medicine ,HYSPLIT ,Environmental science ,lcsh:Q ,Physical geography ,lcsh:Science ,030217 neurology & neurosurgery ,Air mass ,media_common - Abstract
Fine particulate matter (PM2.5) is a typical air pollutant and has adverse health effects across the world, especially in the rapidly developing China due to significant air pollution. The PM2.5 pollution varies with time and space, and is dominated by the locations owing to the differences in geographical conditions including topography and meteorology, the land use and the characteristics of urbanization and industrialization, all of which control the pollution formation by influencing the various sources and transport of PM2.5. To characterize these parameters and mechanisms, the 5-year PM2.5 pollution patterns of Jiangsu province in eastern China with high-resolution was investigated. The Kriging interpolation method of geostatistical analysis (GIS) and the HYbrid Single-Particle Lagrangian Integrated Trajectory (HYSPLIT) model were conducted to study the spatial and temporal distribution of air pollution at 110 sites from national air quality monitoring network covering 13 cities. The PM2.5 pollution of the studied region was obvious, although the annual average concentration decreased from previous 72 to recent 50 μg m−3. Evident temporal variations showed high PM2.5 level in winter and low in summer. Spatially, PM2.5 level was higher in northern (inland, heavy industry) than that in eastern (costal, plain) regions. Industrial sources contributed highest to the air pollution. Backward trajectory clustering and potential source contribution factor (PSCF) analysis indicated that the typical monsoon climate played an important role in the aerosol transport. In summer, the air mass in Jiangsu was mainly affected by the updraft from near region, which accounted for about 60% of the total number of trajectories, while in winter, the long-distance transport from the northwest had a significant impact on air pollution.
- Published
- 2019
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100. Acoustic Emission from Porous Collapse and Moving Dislocations in Granular Mg-Ho Alloys under Compression and Tension
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Yan Chen, Ekhard K. H. Salje, Xiangdong Ding, Jun Sun, Daqing Fang, Salje, Ekhard [0000-0002-8781-6154], and Apollo - University of Cambridge Repository
- Subjects
0301 basic medicine ,Multidisciplinary ,Materials science ,Condensed matter physics ,Tension (physics) ,lcsh:R ,lcsh:Medicine ,Ferroics ,Collapse (topology) ,sub-03 ,Compression (physics) ,Article ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Acoustic emission ,Mean field theory ,lcsh:Q ,Dislocation ,lcsh:Science ,0912 Materials Engineering ,Scaling ,030217 neurology & neurosurgery - Abstract
We identified heterogeneous Mg-Ho alloys as an ideal material to measure the most extensive acoustic emission spectra available. Mg-Ho alloys are porous and show a high density of dislocations, which slide under external tension and compression. These dislocations nucleate near numerous heterogeneities. Two mechanisms compete under external forcing in the structural collapse, namely collapsing holes and the movements of dislocations. Their respective fingerprints in acoustic emission (AE) measurements are very different and relate to their individual signal strengths. Porous collapse generates very strong AE signals while dislocation movements create more but weaker AE signals. This allows the separation of the two processes even though they almost always coincide temporarily. The porous collapse follows approximately mean-field behavior (ε = 1.4, τ’ = 1.82, α = 2.56, x = 1.93, χ = 1.95) with mean field scaling fulfilled. The exponents for dislocation movement are greater (ε = 1.92, τ’ = 2.44, α = 3.0, x = 1.7, χ = 1.42) and follows approximately the force integrated mean-field predictions. The Omori scaling is similar for both mechanisms. The Bath’s law is well fulfilled for the porous collapse but not for the dislocation movements. We suggest that such ‘complex’ mixing behavior is dominant in many other complex materials such as (multi-) ferroics, entropic alloys and porous ferroelastics, and, potentially, homogeneous materials with the simultaneous appearance of different collapse mechanisms.
- Published
- 2019
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