1. Genetic variation and forensic characteristic analysis of 25 STRs of a novel fluorescence co-amplification system in Chinese Southern Shaanxi Han population
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Bofeng Zhu, Ting Mei, Yuanyuan Wei, Jian-Gang Chen, Yao-Shun Liu, Xiaoye Jin, Jian-Fei Li, Hao-Tian Meng, Li-Ping Zhang, and Yuxin Guo
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0301 basic medicine ,Population ,forensic characteristic analysis ,autosomal STR ,Genetic relationship ,03 medical and health sciences ,0302 clinical medicine ,genetic polymorphisms ,Genetic variation ,Y-STR ,030216 legal & forensic medicine ,Han population ,China ,education ,education.field_of_study ,Haplotype ,Southern Shaanxi Han population ,social sciences ,eye diseases ,humanities ,Forensic science ,030104 developmental biology ,Geography ,Oncology ,geographic locations ,Research Paper ,Demography - Abstract
// Yao-Shun Liu 1, 2, 3, 4, * , Jian-Gang Chen 1, 6, * , Ting Mei 1, 2, 3 , Yu-Xin Guo 2, 3 , Hao-Tian Meng 2, 3 , Jian-Fei Li 5 , Yuan-Yuan Wei 2, 3 , Xiao-Ye Jin 2, 3 , Bo-Feng Zhu 2, 3, 4, ** and Li-Ping Zhang 1, ** 1 Department of Biochemistry and Molecular Biology, Basic Medicine College of Xinjiang Medical University, Urumqi, Xinjiang 830011, P. R. China 2 Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi’an Jiaotong University, Xi'an, Shaanxi 710004, P. R. China 3 Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi’an Jiaotong University, Xi’an, Shaanxi 710004, P. R. China 4 Department of Forensic Genetics, School of Forensic Medicine, Southern Medical University, Guangzhou, Guangdong 510515, P. R. China 5 School of Marxism, Xi’an Jiaotong University, Xi’an, Shaanxi 710049, P.R. China 6 Science and Technology Institute, Xinjiang Public Security Department, Urumqi, Xinjiang 830006, P.R. China * The first two authors were equal to this article ** These authors have contributed equally to this work and were co-corresponding authors Correspondance to: Li-Ping Zhang, email: zhangliping806@163.com Keywords: genetic polymorphisms, Southern Shaanxi Han population, forensic characteristic analysis, autosomal STR, Y-STR Received: April 15, 2017 Accepted: June 05, 2017 Published: July 18, 2017 ABSTRACT We analyzed the genetic polymorphisms of 15 autosomal and 10 Y-chromosomal STR loci in 214 individuals of Han population from Southern Shaanxi of China and studied the genetic relationships between Southern Shaanxi Han and other populations. We observed a total of 150 alleles at 15 autosomal STR loci with the corresponding allelic frequencies ranging from 0.0023 to 0.5210, and the combined power of discrimination and exclusion for the 15 autosomal STR loci were 0.99999999999999998866 and 0.999998491, respectively. For the 10 Y-STR loci, totally 100 different haplotypes were obtained, of which 94 were unique. The discriminatory capacity and haplotype diversity values of the 10 Y-STR loci were 0.9259 and 0.998269, respectively. The results demonstrated high genetic diversities of the 25 STR loci in the population for forensic applications. We constructed neighbor-joining tree and conducted principal component analysis based on 15 autosomal STR loci and conducted multidimensional scaling analysis and constructed neighbor-joining tree based on 10 Y-STR loci. The results of population genetic analyses based on both autosomal and Y-chromosome STRs indicated that the studied Southern Shaanxi Han population had relatively closer genetic relationship with Eastern Han population, and distant relationships with Croatian, Serbian and Moroccan populations.
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- 2017
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