1. Limits to the rate of information transmission through the MAPK pathway
- Author
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Paweł Czyż, Frederic Grabowski, Tomasz Lipniacki, and Marek Kochańczyk
- Subjects
MAPK/ERK pathway ,cellular signal transduction ,bandwidth ,MAP Kinase Signaling System ,Biomedical Engineering ,Biophysics ,Bioengineering ,Biochemistry ,Models, Biological ,Biomaterials ,Text mining ,Extracellular stimulation ,medicine ,Animals ,Humans ,Extracellular Signal-Regulated MAP Kinases ,Information transmission ,business.industry ,Chemistry ,Bandwidth (signal processing) ,representation problem ,Complex cell ,Cellular signal transduction ,Cell biology ,medicine.anatomical_structure ,pulsatile stimulation ,Life Sciences–Mathematics interface ,business ,pulse–interval transcoding ,Signalling pathways ,Biotechnology ,Research Article - Abstract
Two important signalling pathways of NF-κB and ERK transmit merely 1 bit of information about the level of extracellular stimulation. It is thus unclear how such systems can coordinate complex cell responses to external cues. We analyse information transmission in the MAPK/ERK pathway that converts both constant and pulsatile EGF stimulation into pulses of ERK activity. Based on an experimentally verified computational model, we demonstrate that, when input consists of sequences of EGF pulses, transmitted information increases nearly linearly with time. Thus, pulse-interval transcoding allows more information to be relayed than the amplitude–amplitude transcoding considered previously for the ERK and NF-κB pathways. Moreover, the information channel capacity C, or simply bitrate, is not limited by the bandwidth B = 1/ τ , where τ ≈ 1 h is the relaxation time. Specifically, when the input is provided in the form of sequences of short binary EGF pulses separated by intervals that are multiples of τ / n (but not shorter than τ ), then for n = 2, C ≈ 1.39 bit h −1 ; and for n = 4, C ≈ 1.86 bit h −1 . The capability to respond to random sequences of EGF pulses enables cells to propagate spontaneous ERK activity waves across tissue.
- Published
- 2019