38 results on '"Yong Yang"'
Search Results
2. Creating and Stabilizing an Oxidized Pd Surface under Reductive Conditions for Photocatalytic Hydrogenation of Aromatic Carbonyls
- Author
-
Wei Qiao, Xing Fan, Weifeng Liu, Fahir Niaz Khan, Dongsheng Zhang, Feiyu Han, Huiyu Yue, Yajiao Li, Nikolaos Dimitratos, Stefania Albonetti, Xiaodong Wen, Yong Yang, Flemming Besenbacher, Yongwang Li, Hans Niemantsverdriet, Haiping Lin, and Ren Su
- Subjects
Colloid and Surface Chemistry ,General Chemistry ,Biochemistry ,Catalysis - Abstract
Photocatalysis provides an eco-friendly route for the hydrogenation of aromatic carbonyls to O-free aromatics, which is an important refining process in the chemical industry that is generally carried out under high pressure of hydrogen at elevated temperatures. However, aromatic carbonyls are often only partially hydrogenated to alcohols, which readily desorbs and are hardly further deoxygenated under ambient conditions. Here, we show that by constructing an oxide surface over the Pd cocatalyst supported on graphitic carbon nitride, an alternative hydrogenation path of aromatic carbonyls becomes available via a step-wise acetalization and hydrogenation, thus allowing efficient and selective production of O-free aromatics. The PdO surface allows for optimum adsorption of reactants and intermediates and rapid abstraction of hydrogen from the alcohol donor, favoring fast acetalization of the carbonyls and their consecutive hydrogenation to O-free hydrocarbons. The photocatalytic hydrogenation of benzaldehyde into toluene shows a high selectivity of >90% and a quantum efficiency of ∼10.2% under 410 nm irradiation. By adding trace amounts of HCl to the reaction solution, the PdO surface remains stable and active for long-term operation at high concentrations, offering perspective for practical applications.
- Published
- 2023
3. Exploring the Role of the Central Carbide of the Nitrogenase Active-Site FeMo-cofactor through Targeted 13C Labeling and ENDOR Spectroscopy
- Author
-
Dennis R. Dean, Dmitriy Lukoyanov, Zhi-Yong Yang, Lance C. Seefeldt, Brian M. Hoffman, and Ana Pérez-González
- Subjects
Molybdoferredoxin ,Molecular Conformation ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Article ,Catalysis ,Carbide ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Catalytic Domain ,Nitrogenase ,Molecule ,Anisotropy ,Spectroscopy ,Azotobacter vinelandii ,Carbon Isotopes ,biology ,Cementite ,Electron Spin Resonance Spectroscopy ,Active site ,General Chemistry ,Trigonal prismatic molecular geometry ,0104 chemical sciences ,Crystallography ,chemistry ,Isotope Labeling ,biology.protein - Abstract
Mo-dependent nitrogenase is a major contributor to global biological N(2) reduction, which sustains life on Earth. Its multi-metallic active-site FeMo-cofactor (Fe(7)MoS(9)C-homocitrate) contains a carbide (C(4−)) centered within a trigonal prismatic CFe(6) core resembling the structural motif of the iron carbide, cementite. The role of the carbide in FeMo-cofactor binding and activation of substrates and inhibitors is unknown. To explore this role, the carbide has been in effect selectively enriched with (13)C, which enables its detailed examination by ENDOR/ESEEM spectroscopies. (13)C-carbide ENDOR of the S = 3/2 resting state (E(0)) is remarkable, with an extremely small isotropic hyperfine coupling constant, (C)a = +0.86 MHz. Turnover under high CO partial pressure generates the S = 1/2 hi-CO state, with two CO molecules bound to FeMo-cofactor. This conversion surprisingly leaves the small magnitude of the (13)C carbide isotropic hyperfine-coupling constant essentially unchanged, (C)a = −1.30 MHz. This indicates that both the E(0) and hi-CO states exhibit an exchange-coupling scheme with nearly cancelling contributions to (C)a from three spin-up and three spin-down carbide-bound Fe ions. In contrast, the anisotropic hyperfine coupling constant undergoes a symmetry change upon conversion of E(0) to hi-CO that may be associated with bonding and coordination changes at Fe ions. In combination with the negligible difference between CFe(6) core structures of E(0) and hi-CO, these results suggest that in CO-inhibited hi-CO the dominant role of the FeMo-cofactor carbide is to maintain the core structure, rather than to facilitate inhibitor binding through changes in Fe-carbide covalency or stretching/breaking of carbide–Fe bonds.
- Published
- 2021
4. Electron Redistribution within the Nitrogenase Active Site FeMo-Cofactor During Reductive Elimination of H2 to Achieve N≡N Triple-Bond Activation
- Author
-
Dmitriy Lukoyanov, Simone Raugei, Lance C. Seefeldt, Dennis R. Dean, Brian M. Hoffman, and Zhi-Yong Yang
- Subjects
biology ,Chemistry ,Hydride ,Photodissociation ,Active site ,General Chemistry ,010402 general chemistry ,Triple bond ,01 natural sciences ,Biochemistry ,Electron transport chain ,Catalysis ,Reductive elimination ,0104 chemical sciences ,Crystallography ,Colloid and Surface Chemistry ,Catalytic cycle ,biology.protein ,Redistribution (chemistry) - Abstract
Nitrogen fixation by nitrogenase begins with the accumulation of four reducing equivalents at the active-site FeMo-cofactor (FeMo-co), generating a state (denoted E4(4H)) with two [Fe-H-Fe] bridging hydrides. Recently, photolytic reductive elimination (re) of the E4(4H) hydrides showed that enzymatic re of E4(4H) hydride yields an H2-bound complex (E4(H2,2H)), in a process corresponding to a formal 2-electron reduction of the metal-ion core of FeMo-co. The resulting electron-density redistribution from Fe-H bonds to the metal ions themselves enables N2 to bind with concomitant H2 release, a process illuminated here by QM/MM molecular dynamics simulations. What is the nature of this redistribution? Although E4(H2,2H) has not been trapped, cryogenic photolysis of E4(4H) provides a means to address this question. Photolysis of E4(4H) causes hydride-re with release of H2, generating doubly reduced FeMo-co (denoted E4(2H)*), the extreme limit of the electron-density redistribution upon formation of E4(H2,2H). Here we examine the doubly reduced FeMo-co core of the E4(2H)* limiting-state by 1H, 57Fe, and 95Mo ENDOR to illuminate the partial electron-density redistribution upon E4(H2,2H) formation during catalysis, complementing these results with corresponding DFT computations. Inferences from the E4(2H)* ENDOR results as extended by DFT computations include (i) the Mo-site participates negligibly, and overall it is unlikely that Mo changes valency throughout the catalytic cycle; and (ii) two distinctive E4(4H) 57Fe signals are suggested as associated with structurally identified "anchors" of one bridging hydride, two others with identified anchors of the second, with NBO-analysis further identifying one anchor of each hydride as a major recipient of electrons released upon breaking Fe-H bonds.
- Published
- 2020
5. Single-Crystal Inorganic Helical Architectures Induced by Asymmetrical Defects in Sub-Nanometric Wires
- Author
-
Bolong Huang, Xun Wang, Qinghua Zhang, Lin Gu, Yong Yang, Shuangming Chen, Qichen Lu, and Li Song
- Subjects
Surface (mathematics) ,Quantitative Biology::Biomolecules ,Chemistry ,Charge separation ,General Chemistry ,Photothermal therapy ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Colloid and Surface Chemistry ,Chemical physics ,Structure design ,Coulomb ,Single crystal - Abstract
Constructing single-crystal inorganic helical structures is a fascinating subject for a large variety of research fields. However, the driving force of self-coiling, particularly in helical architectures, still remains a major challenge. Here, using MoO3-x sub-nanometric wires (SNWs) as an example, we identified that spontaneous helical architecture with different dimensional features is closely related with their surface asymmetrical defects. Specifically, the surface defects of SNWs are critical to produce the self-coiling process, thereby achieving the ordered helical conformations. Theoretical calculations further suggest that the formation of in-plane and out-of-plane coiling structures is determined by the asymmetrical distribution of the surface defects, and the inhomogeneous charge separation with strong Coulomb attraction dominates the different structural configurations. The resulting MoO3-x SNW exhibits excellent photothermal behaviors in both aqueous solutions and hydrogel matrixes. Our study provides a novel protocol to achieve helical structure design for their future applications.
- Published
- 2021
6. On-Surface Growth of Single-Layered Homochiral 2D Covalent Organic Frameworks by Steric Hindrance Strategy
- Author
-
Li-Jun Wan, Cheng Lu, Dong Wang, Ting Chen, Zhi-Yong Yang, Ye Hong, and Yi-Ping Mo
- Subjects
inorganic chemicals ,Surface (mathematics) ,Steric effects ,Quantitative Biology::Biomolecules ,Chemistry ,organic chemicals ,High Energy Physics::Lattice ,High Energy Physics::Phenomenology ,technology, industry, and agriculture ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Crystallography ,Colloid and Surface Chemistry ,Covalent bond ,polycyclic compounds ,heterocyclic compounds ,Chirality (chemistry) - Abstract
Investigation of chirality in on-surface synthesis is of significance not only for fabricating atomically precise covalently bonded chiral species but also for unveiling chiral phenomena involving chemical reactions. In this contribution, we present the growth of single-layered homochiral 2D covalent organic frameworks (COFs) on surfaces based on a steric hindrance strategy, by which both the chiral expression of the prochiral precursor and the newly formed C═N bonds are successfully steered. When coupling a tritopic monomer with the prochiral ditopic molecule with phenyl substituents, two enantiomers of the precursor are randomly integrated in the product via variable C═N linkages, resulting in distorted hexagonal frameworks without chiral expression. After equipping the prochiral precursor with more hindered bulky substituents, highly regular homochiral 2D COFs are fabricated, in which only one of the enantiomers of the prochiral precursor is integrated, and all C═N linkages possess the same configuration. Structural analysis based on high resolution scanning tunneling microscopy images and theoretical simulations indicate that the homochiral 2D COFs are generated through an enantioselective on-surface polymerization driven by the steric hindrance effect. This result not only benefits understanding and controlling chirality in on-surface synthesis but also provides a new approach for the growth of highly regular COFs on surfaces.
- Published
- 2020
7. Establishing a Thermodynamic Landscape for the Active Site of Mo-Dependent Nitrogenase
- Author
-
Shelley D. Minteer, Rong Cai, Lance C. Seefeldt, David P. Hickey, Oliver Einsle, Katharina Grunau, and Zhi-Yong Yang
- Subjects
Molybdoferredoxin ,Magnetic Resonance Spectroscopy ,Nitrogen ,Kinetics ,Coenzymes ,Biosensing Techniques ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Cofactor ,Catalysis ,Electrolysis ,Electron Transport ,Colloid and Surface Chemistry ,Catalytic Domain ,Nitrogenase ,Molecule ,Polyethyleneimine ,chemistry.chemical_classification ,Molybdenum ,biology ,Active site ,Hydrogels ,General Chemistry ,Electrochemical Techniques ,Enzymes, Immobilized ,Combinatorial chemistry ,Electron transport chain ,0104 chemical sciences ,Enzyme ,chemistry ,biology.protein ,Thermodynamics ,Oxidoreductases - Abstract
Nitrogenase enzymes are the only biological catalysts able to convert N2 to NH3. Molybdenum-dependent nitrogenase consists of two proteins and three metallocofactors that sequentially shuttle eight electrons between three distinct metallocofactors during the turnover of one molecule of N2. While the kinetics of isolated nitrogenase has been extensively studied, little is known about the thermodynamics of its cofactors under catalytically relevant conditions. Here, we employ a recently described pyrene-modified linear poly(ethylenimine) hydrogel to immobilize the catalytic protein of nitrogenase onto an electrode surface. The resulting electroenzymatic interface enabled direct measurement of reduction potentials associated with each metallocofactor of the nitrogenase complex, illuminating the role of nitrogenase reductase in altering the potential landscape in the active site of nitrogenase and revealing the endergonic nature of electron-transfer steps associated with the conversion of N2 to NH3 under physiological conditions.
- Published
- 2019
8. A General Approach to Preferential Formation of Active Fe–Nx Sites in Fe–N/C Electrocatalysts for Efficient Oxygen Reduction Reaction
- Author
-
Tae Joo Shin, Jae Myeong Lee, Min Gyu Kim, Chul Sung Kim, Tae-Young Kim, Hyeon Suk Shin, Jung Tae Lim, Hu Young Jeong, Seung Yong Yang, Dongwoo Kang, Jinwoo Woo, Sang Hoon Joo, Dong Jun Seo, Jae Yeong Cheon, and Young Jin Sa
- Subjects
biology ,Chemistry ,Inorganic chemistry ,Active site ,chemistry.chemical_element ,02 engineering and technology ,General Chemistry ,Carbon nanotube ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,law.invention ,Colloid and Surface Chemistry ,Adsorption ,law ,Etching ,biology.protein ,0210 nano-technology ,Layer (electronics) ,Carbon ,Pyrolysis - Abstract
Iron–nitrogen on carbon (Fe–N/C) catalysts have emerged as promising nonprecious metal catalysts (NPMCs) for oxygen reduction reaction (ORR) in energy conversion and storage devices. It has been widely suggested that an active site structure for Fe–N/C catalysts contains Fe–Nx coordination. However, the preparation of high-performance Fe–N/C catalysts mostly involves a high-temperature pyrolysis step, which generates not only catalytically active Fe–Nx sites, but also less active large iron-based particles. Herein, we report a general “silica-protective-layer-assisted” approach that can preferentially generate the catalytically active Fe–Nx sites in Fe–N/C catalysts while suppressing the formation of large Fe-based particles. The catalyst preparation consisted of an adsorption of iron porphyrin precursor on carbon nanotube (CNT), silica layer overcoating, high-temperature pyrolysis, and silica layer etching, which yielded CNTs coated with thin layer of porphyrinic carbon (CNT/PC) catalysts. Temperature-co...
- Published
- 2016
9. Reductive Elimination of H2 Activates Nitrogenase to Reduce the N≡N Triple Bond: Characterization of the E4(4H) Janus Intermediate in Wild-Type Enzyme
- Author
-
Zhi-Yong Yang, Brian M. Hoffman, Dmitriy Lukoyanov, Lance C. Seefeldt, Dennis R. Dean, and Nimesh Khadka
- Subjects
Models, Molecular ,Nitrogen ,Protein Conformation ,Stereochemistry ,Inorganic chemistry ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Article ,Catalysis ,Reductive elimination ,Colloid and Surface Chemistry ,Protein structure ,Nitrogenase ,Moiety ,Janus ,010405 organic chemistry ,Chemistry ,Wild type ,General Chemistry ,Triple bond ,Oxidative addition ,0104 chemical sciences ,Kinetics ,Oxidation-Reduction ,Hydrogen - Abstract
We have proposed a reductive elimination/oxidative addition (re/oa) mechanism for reduction of N2 to 2NH3 by nitrogenase, based on identification of a freeze-trapped intermediate of the α-70Val→Ile substituted MoFe protein as the Janus intermediate that stores four reducing equivalents on FeMo-co as two [Fe-H-Fe] bridging hydrides (denoted E4(4H)). The mechanism postulates that obligatory re of the hydrides as H2 drives reduction of N2 to a state (denoted E4(2N2H)) with a moiety at the diazene (HN=NH) reduction level bound to the catalytic FeMo-cofactor. In the present work, EPR/ENDOR and photophysical measurements show that a state freeze-trapped during N2 reduction by wild type (WT) MoFe protein is the same Janus intermediate, thereby establishing the α-70Val→Ile intermediate as a reliable guide to mechanism, and enabling new experimental tests of the re/oa mechanism with WT enzyme. These allow us to show that the re/oa mechanism accounts for the longstanding Key Constraints on mechanism. Monitoring the S = ½ FeMo-co EPR signal of Janus in WT MoFe during N2 reduction under mixed-isotope condition, H2O buffer/D2, and the converse, establishes that the bridging hydrides/deuterides do not exchange with solvent during enzymatic turnover, thereby explaining earlier observations and verifying the re/oa mechanism. Relaxation of E4(2N2H) to the WT resting-state is shown to occur via oa of H2 and release of N2 to form Janus, followed by sequential release of two H2, demonstrating the kinetic reversibility of the re/oa equilibrium. The relative populations of E4(2N2H) and E4(4H) freeze-trapped during WT turnover furthermore show that the rapidly reversible re/oa equilibrium between [E4(4H) + N2] and [E4(2N2H) + H2] is roughly thermoneutral (ΔreG0 ~ −2 kcal/mol), whereas hydrogenation of gas-phase N2 would be highly endergonic. These findings establish (i) that re/oa satisfies all key constraints on mechanism, (ii) that Janus is the key to N2 reduction by WT enzyme, which (iii) indeed occurs via the re/oa mechanism. Thus emerges a picture of the central mechanistic steps by which the nitrogenase MoFe protein carries out one of the most challenging chemical transformation in biology, the reduction of the N≡N triple bond.
- Published
- 2016
10. Reversible Photoinduced Reductive Elimination of H2 from the Nitrogenase Dihydride State, the E4(4H) Janus Intermediate
- Author
-
Nimesh Khadka, Brian M. Hoffman, Dennis R. Dean, Zhi-Yong Yang, Dmitriy Lukoyanov, and Lance C. Seefeldt
- Subjects
Photochemistry ,Quantum yield ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Article ,Catalysis ,Reductive elimination ,law.invention ,Colloid and Surface Chemistry ,law ,Nitrogenase ,Kinetic isotope effect ,Janus ,Electron paramagnetic resonance ,010405 organic chemistry ,Chemistry ,Photodissociation ,Electron Spin Resonance Spectroscopy ,General Chemistry ,Oxidative addition ,0104 chemical sciences ,Kinetics ,Oxidation-Reduction ,Hydrogen - Abstract
We recently demonstrated that N2 reduction by nitrogenase involves the obligatory release of one H2 per N2 reduced. These studies focused on the E4(4H) ‘Janus intermediate’, which has accumulated four reducing equivalents as two [Fe-H-Fe] bridging hydrides. E4(4H) is poised to bind and reduce N2 through reductive elimination (re) of the two hydrides as H2, coupled to the binding/reduction of N2. To obtain atomic-level details of the re activation process, we carried out in situ 450 nm photolysis of E4(4H) in an EPR cavity at temperatures below 20 K. ENDOR and EPR measurements show that photolysis generates a new FeMo-co state, denoted E4(2H)*, through the photoinduced re of the two bridging hydrides of E4(4H) as H2. During cryoannealing at temperatures above 175 K, E4(2H)* reverts to E4(4H) through the oxidative addition (oa) of the H2. The photolysis quantum yield is temperature invariant at liquid helium temperatures and shows a rather large kinetic isotope effect, KIE = 10. These observations imply that photoinduced release of H2 involves a barrier to the combination of the two nascent H atoms, in contrast to a barrierless process for mono-metallic inorganic complexes, and further suggest that H2 formation involves nuclear tunneling through that barrier. The oa recombination of E4(2H)* with the liberated H2 offers compelling evidence for the Janus intermediate as the point at which H2 is necessarily lost during N2 reduction; this mechanistically coupled loss must be gated by N2 addition that drives the re/oa equilibrium toward reductive elimination of H2 with N2 binding/reduction.
- Published
- 2016
11. Correction to 'Establishing a Thermodynamic Landscape for the Active Site of Mo-Dependent Nitrogenase'
- Author
-
Shelley D. Minteer, Lance C. Seefeldt, David P. Hickey, Rong Cai, Zhi-Yong Yang, Katharina Grunau, and Oliver Einsle
- Subjects
Colloid and Surface Chemistry ,biology ,Chemistry ,Stereochemistry ,biology.protein ,Active site ,Nitrogenase ,General Chemistry ,Biochemistry ,Catalysis - Published
- 2020
12. Identification of a Key Catalytic Intermediate Demonstrates That Nitrogenase Is Activated by the Reversible Exchange of N2 for H2
- Author
-
Dmitriy Lukoyanov, Dennis R. Dean, Nimesh Khadka, Zhi-Yong Yang, Lance C. Seefeldt, and Brian M. Hoffman
- Subjects
Nitrogen ,Kinetics ,Coenzymes ,Analytical chemistry ,Biochemistry ,Article ,Catalysis ,Cofactor ,law.invention ,Colloid and Surface Chemistry ,law ,Catalytic Domain ,Nitrogenase ,Electron paramagnetic resonance ,biology ,Chemistry ,Relaxation (NMR) ,Electron Spin Resonance Spectroscopy ,Temperature ,General Chemistry ,Diatomic molecule ,Enzyme Activation ,Biocatalysis ,biology.protein ,Physical chemistry ,Hydrogen - Abstract
Freeze-quenching nitrogenase during turnover with N2 traps an S = ½ intermediate that was shown by ENDOR and EPR spectroscopy to contain N2 or a reduction product bound to the active-site molybdenum-iron cofactor (FeMo-co). To identify this intermediate (termed here EG), we turned to a quench-cryoannealing relaxation protocol. The trapped state is allowed to relax to the resting E0 state in frozen medium at a temperature below the melting temperature; relaxation is monitored by periodically cooling the sample to cryogenic temperature for EPR analysis. During -50 °C cryoannealing of EG prepared under turnover conditions in which the concentrations of N2 and H2 ([H2], [N2]) are systematically and independently varied, the rate of decay of EG is accelerated by increasing [H2] and slowed by increasing [N2] in the frozen reaction mixture; correspondingly, the accumulation of EG is greater with low [H2] and/or high [N2]. The influence of these diatomics identifies EG as the key catalytic intermediate formed by reductive elimination of H2 with concomitant N2 binding, a state in which FeMo-co binds the components of diazene (an N-N moiety, perhaps N2 and two [e(-)/H(+)] or diazene itself). This identification combines with an earlier study to demonstrate that nitrogenase is activated for N2 binding and reduction through the thermodynamically and kinetically reversible reductive-elimination/oxidative-addition exchange of N2 and H2, with an implied limiting stoichiometry of eight electrons/protons for the reduction of N2 to two NH3.
- Published
- 2015
13. A General Approach to Preferential Formation of Active Fe-N
- Author
-
Young Jin, Sa, Dong-Jun, Seo, Jinwoo, Woo, Jung Tae, Lim, Jae Yeong, Cheon, Seung Yong, Yang, Jae Myeong, Lee, Dongwoo, Kang, Tae Joo, Shin, Hyeon Suk, Shin, Hu Young, Jeong, Chul Sung, Kim, Min Gyu, Kim, Tae-Young, Kim, and Sang Hoon, Joo
- Abstract
Iron-nitrogen on carbon (Fe-N/C) catalysts have emerged as promising nonprecious metal catalysts (NPMCs) for oxygen reduction reaction (ORR) in energy conversion and storage devices. It has been widely suggested that an active site structure for Fe-N/C catalysts contains Fe-N
- Published
- 2016
14. CMPs as scaffolds for constructing porous catalytic frameworks: a built-in heterogeneous catalyst with high activity and selectivity based on nanoporous metalloporphyrin polymers
- Author
-
Long Chen, Yong Yang, and Donglin Jiang
- Subjects
Catalysis -- Analysis ,Condensation -- Analysis ,Organometallic compounds -- Structure ,Organometallic compounds -- Chemical properties ,Porphyrins -- Structure ,Porphyrins -- Chemical properties ,Sulfides -- Chemical properties ,Sulfides -- Structure ,Chemistry - Abstract
The synthesis and functions of a porous catalytic framework based on conjugated micro- and mesoporous polymers with metalloporphyrin building blocks (FeP-CMP) is described. The newly synthesized Fep-CMP developed as a heterogeneous catalyst via a Suzuki polycondensation reaction could be used for the activation of molecular oxygen to convert sulfide to sulfoxide under ambient temperature and pressure.
- Published
- 2010
15. Is Mo involved in hydride binding by the four-electron reduced ([E.sub.4]) intermediate of the nitrogenase MoFe protein?
- Author
-
Lukoyanov, Dmitriy, Zhi-Yong Yang, Dean, Dennis R., Seefeldt, Lance C., and Hoffman, Brian M.
- Subjects
Catalysis -- Analysis ,Iron alloys -- Chemical properties ,Iron alloys -- Electric properties ,Molybdenum -- Chemical properties ,Molybdenum -- Electric properties ,Protein binding -- Analysis ,Chemistry - Abstract
The possible involvement of Mo in substrate interactions during catalytic turnover is addressed. The response of the Mo coupling to subtle conformational changes in [E.sub.0] and to the formation of [E.sub.4] has shown that Mo is involved in tuning the geometric and electronic properties of FeMo-co in these states.
- Published
- 2010
16. Noncovalent synthesis of shape-persistent cyclic hexamers from ditopic hydrazide-based supramolecular synthons and asymmetric induction of supramolecular chirality
- Author
-
Yong Yang, Min Xue, Jun-Feng Xiang, and Chuan-Feng Chen
- Subjects
Chirality -- Analysis ,Ring formation (Chemistry) -- Analysis ,Circular dichroism -- Usage ,Solvation -- Analysis ,Chemistry - Abstract
Properly encoded recognition sites and a well-defined algorithm for intermolecular and intramolecular interactions are used for self-assembling the 120 [degree] spacer linked ditopic hydrazide-based supramolecular synthons into shape-persistent cyclic hexamers in apolar solvents. The assembly from the monomer with chiral auxiliary terminative groups has exhibited supramolecular chirality in solution, which is confirmed by concentration-dependent CD spectra.
- Published
- 2009
17. C-Lysine conjugates: pH-controlled light-activated reagents for efficient double-stranded DNA cleavage with implications for cancer therapy
- Author
-
Wang-Yong Yang, Breiner, Boris, Kovalenko, Sergei V., Chi Ben, Singh, Mani, LeGrand, Shauna N., Qing-Xiang Amy Sang, Strouse, Geoffrey F., Copland, John A., and Alabugin, Igor V.
- Subjects
Cancer cells -- Genetic aspects ,Cancer cells -- Physiological aspects ,DNA damage -- Analysis ,Electron transport -- Analysis ,Lysine -- Chemical properties ,Methylation -- Analysis ,Chemistry - Abstract
The mechanisms involved with the enhancement of the pH-controlled double-stranded DNA cleavage of the light-activated lysine conjugates and other reagents are discussed. The results prove that the studied molecules can also be employed for cancer phototherapy and hence are extremely valuable.
- Published
- 2009
18. ENDOR/HYSCORE Studies of the Common Intermediate Trapped during Nitrogenase Reduction of N2H2, CH3N2H, and N2H4 Support an Alternating Reaction Pathway for N2 Reduction
- Author
-
Dmitriy Lukoyanov, Zhi Yong Yang, Brian M. Hoffman, Kuppala V. Narasimhulu, Sergei A. Dikanov, Dennis R. Dean, Brett M. Barney, Rimma I. Samoilova, and Lance C. Seefeldt
- Subjects
Models, Molecular ,Nitrogen ,Stereochemistry ,Hydrazine ,Crystallography, X-Ray ,Imides ,Photochemistry ,Biochemistry ,Article ,Catalysis ,Cofactor ,law.invention ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,MoFe Protein ,law ,Nitrogenase ,Electron paramagnetic resonance ,biology ,Chemistry ,Electron Spin Resonance Spectroscopy ,Substrate (chemistry) ,General Chemistry ,Hydrazines ,Yield (chemistry) ,biology.protein ,Oxidation-Reduction - Abstract
Enzymatic N(2) reduction proceeds along a reaction pathway composed of a sequence of intermediate states generated as a dinitrogen bound to the active-site iron-molybdenum cofactor (FeMo-co) of the nitrogenase MoFe protein undergoes six steps of hydrogenation (e(-)/H(+) delivery). There are two competing proposals for the reaction pathway, and they invoke different intermediates. In the 'Distal' (D) pathway, a single N of N(2) is hydrogenated in three steps until the first NH(3) is liberated, and then the remaining nitrido-N is hydrogenated three more times to yield the second NH(3). In the 'Alternating' (A) pathway, the two N's instead are hydrogenated alternately, with a hydrazine-bound intermediate formed after four steps of hydrogenation and the first NH(3) liberated only during the fifth step. A recent combination of X/Q-band EPR and (15)N, (1,2)H ENDOR measurements suggested that states trapped during turnover of the α-70(Ala)/α-195(Gln) MoFe protein with diazene or hydrazine as substrate correspond to a common intermediate (here denoted I) in which FeMo-co binds a substrate-derived [N(x)H(y)] moiety, and measurements reported here show that turnover with methyldiazene generates the same intermediate. In the present report we describe X/Q-band EPR and (14/15)N, (1,2)H ENDOR/HYSCORE/ESEEM measurements that characterize the N-atom(s) and proton(s) associated with this moiety. The experiments establish that turnover with N(2)H(2), CH(3)N(2)H, and N(2)H(4) in fact generates a common intermediate, I, and show that the N-N bond of substrate has been cleaved in I. Analysis of this finding leads us to conclude that nitrogenase reduces N(2)H(2), CH(3)N(2)H, and N(2)H(4) via a common A reaction pathway, and that the same is true for N(2) itself, with Fe ion(s) providing the site of reaction.
- Published
- 2011
19. Assembly of three-dimensional polymeric constructs containing cells/biomolecules using carbon dioxide
- Author
-
Yong Yang, Yubing Xie, Xihai Kang, Lee, L. James, and Kniss, Douglas A.
- Subjects
Biomolecules -- Properties ,Biomolecules -- Research ,Carbon dioxide -- Properties ,Scanning electron microscopes -- Observations ,Polymers -- Structure ,Polymers -- Research ,Chemistry - Abstract
A simple and versatile approach is described for assembling polymer-based three-dimensional (3D) constructs containing cells/biomolecules by using low pressure C[O.sub.2]. This C[O.sub.2]-assisted assembly has provided an affordable and biologically permissive process, particularly for the simultaneous assembly of a large number of micro-/nanostructures containing temperature and/or solvent-sensitive cells and biomolecules.
- Published
- 2006
20. C-Lysine Conjugates: pH-Controlled Light-Activated Reagents for Efficient Double-Stranded DNA Cleavage with Implications for Cancer Therapy
- Author
-
Shauna N. LeGrand, Mani Prabha Singh, Wang Yong Yang, Qing-Xiang Amy Sang, Igor V. Alabugin, Boris Breiner, John A. Copland, Chi Ben, Geoffrey F. Strouse, and Serguei V. Kovalenko
- Subjects
Models, Molecular ,Light ,Stereochemistry ,Lysine ,Antineoplastic Agents ,Protonation ,Biochemistry ,Article ,Catalysis ,Electron transfer ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Cell Line, Tumor ,Neoplasms ,Humans ,Ammonium ,DNA Cleavage ,Solubility ,Cell Proliferation ,Photolysis ,Molecular Structure ,DNA ,General Chemistry ,Hydrogen-Ion Concentration ,Phosphate ,chemistry ,Intramolecular force ,Plasmids - Abstract
Double-stranded DNA cleavage of light-activated lysine conjugates is strongly enhanced at the slightly acidic pH (7) suitable for selective targeting of cancer cells. This enhancement stems from the presence of two amino groups of different basicities. The first amino group plays an auxiliary role by enhancing solubility and affinity to DNA, whereas the second amino group, which is positioned next to the light-activated DNA cleaver, undergoes protonation at the desired pH threshold. This protonation results in two synergetic effects which account for the increased DNA-cleaving ability at the lower pH. First, lysine conjugates show tighter binding to DNA at the lower pH, which is consistent with the anticipated higher degree of interaction between two positively charged ammonium groups with the negatively charged phosphate backbone of DNA. Second, the unproductive pathway which quenches the excited state of the photocleaver through intramolecular electron transfer is eliminated once the donor amino group next to the chromophore is protonated. Experiments in the presence of traps for diffusing radicals show that reactive oxygen species do not contribute significantly to the mechanism of DNA cleavage at the lower pH, which is indicative of tighter binding to DNA under these conditions. This feature is valuable not only because many solid tumors are hypoxic but also because cleavage which does not depend on diffusing species is more localized and efficient. Sequence-selectivity experiments suggest combination of PET and base alkylation as the chemical basis for the observed DNA damage. The utility of these molecules for phototherapy of cancer is confirmed by the drastic increase in toxicity of five conjugates against cancer cell lines upon photoactivation.
- Published
- 2009
21. Copolymerization of ethylene with polar monomers: Chain propagation and side reactions. A DFT theoretical study using Zwitterionic Ni(II) and Pd(II) catalysts
- Author
-
Szabo, Miklos J., Galea, Natasha M., Michalak, Arthur, Sheng-Yong Yang, Ziegler, Tom, Groux, Laurent F., and Piers, Warren E.
- Subjects
Ethylene -- Chemical properties ,Polymerization -- Analysis ,Monomers -- Chemical properties ,Density functionals -- Usage ,Chemistry - Abstract
Calculations utilizing anionic substituted derivatives of the cationic N^N Ni(II) and Pd(II) diimine Brookhart complex is conducted on the barriers of ethylene and acrylontrile insertion into a M- methyl, propyl and CH(CN)Et bond for M=Ni, Pd. The possibility of side reactions such as chelate formation with the polar functionality and oligomerization of the active species after acrylonitrile insertion are explored.
- Published
- 2005
22. Simple synthesis route to monodispersed SBA-15 silica rods
- Author
-
Sayari, Abdelhamid, Bao-Hang Han, and Yong Yang
- Subjects
Silica -- Research ,Chemical synthesis -- Observations ,Chemistry - Abstract
A simple, flexible, reproducible, high-yielding synthesis of hexagonally facetted SBA-15 straight rods with uniform sizes under static conditions without using salts is presented. The result shows that in order to prepare short monodispersed SBA-15 rods, the absence of stirring is required, the temperature of the first stage should not exceed 60 degree centigrade and the addition of inorganic salts are not required.
- Published
- 2004
23. In situ Ta-MS study of the six-membered-ring-based growth of carbon nanotubes with benzene precursor
- Author
-
Yajun Tian, Zheng Hu, Yong Yang, Xizhang Wang, Xin Chen, Hua Xu, Qiang Wu, Weijie Ji, and Yi Chen
- Subjects
Chemical vapor deposition -- Analysis ,Spectrum analysis -- Analysis ,Benzene -- Usage ,Chemistry - Abstract
The chemical vapor deposition (CVD) growth of carbon nanotubes (CNTs) with benzene precursor is studied by the in situ thermal analysis-mass spectroscopic (TA-MS) technique. The study provides a way to clarify the mechanism of CVD synthesis of CNTs with other precursors.
- Published
- 2004
24. Inhibition of Non-ATG Translational Events in Cells via Covalent Small Molecules Targeting RNA
- Author
-
Henry D. Wilson, Wang Yong Yang, Disney, and Sai Pradeep Velagapudi
- Subjects
Untranslated region ,RNA Splicing ,Biotin ,Biochemistry ,Catalysis ,Article ,Small Molecule Libraries ,Colloid and Surface Chemistry ,Polysome ,Chlorocebus aethiops ,Tremor ,Protein biosynthesis ,RNA Precursors ,Animals ,Humans ,Chemistry ,Oligonucleotide ,RNA ,General Chemistry ,Molecular biology ,Cell biology ,Open reading frame ,Fragile X Syndrome ,Polyribosomes ,Protein Biosynthesis ,RNA splicing ,COS Cells ,Ataxia ,Small molecule binding ,Trinucleotide Repeat Expansion - Abstract
One major class of disease-causing RNAs is expanded repeating transcripts. These RNAs cause diseases via multiple mechanisms, including: (i) gain-of-function, in which repeating RNAs bind and sequester proteins involved in RNA biogenesis and (ii) repeat associated non-ATG (RAN) translation, in which repeating transcripts are translated into toxic proteins without use of a canonical, AUG, start codon. Herein, we develop and study chemical probes that bind and react with an expanded r(CGG) repeat (r(CGG)(exp)) present in a 5' untranslated region that causes fragile X-associated tremor/ataxia syndrome (FXTAS). Reactive compounds bind to r(CGG)(exp) in cellulo as shown with Chem-CLIP-Map, an approach to map small molecule binding sites within RNAs in cells. Compounds also potently improve FXTAS-associated pre-mRNA splicing and RAN translational defects, while not affecting translation of the downstream open reading frame. In contrast, oligonucleotides affect both RAN and canonical translation when they bind to r(CGG)(exp), which is mechanistically traced to a decrease in polysome loading. Thus, designer small molecules that react with RNA targets can be used to profile the RNAs to which they bind in cells, including identification of binding sites, and can modulate several aspects of RNA-mediated disease pathology in a manner that may be more beneficial than oligonucleotides.
- Published
- 2015
25. Copolymerization of Ethylene with Polar Monomers: Chain Propagation and Side Reactions. A DFT Theoretical Study Using Zwitterionic Ni(II) and Pd(II) Catalysts
- Author
-
Laurent F. Groux, Sheng-Yong Yang, Warren E. Piers, Miklos J. Szabo, Tom Ziegler, Artur Michalak, and Natasha M. Galea
- Subjects
Chain propagation ,Ethylene ,Biochemistry ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Nickel ,Polymer chemistry ,Organometallic Compounds ,Copolymer ,Organic chemistry ,Diimine ,Acrylonitrile ,Molecular Structure ,Chemistry ,Aryl ,Cationic polymerization ,Stereoisomerism ,General Chemistry ,Ethylenes ,Kinetics ,Models, Chemical ,Oxidation-Reduction ,Palladium - Abstract
Calculations utilizing anionic substituted derivates of the cationic N(wedge)N--Ni(II) and Pd(II) diimine Brookhart complex have been carried out on the barriers of ethylene and acrylonitrile insertion into a M- methyl, propyl and CH(CN)Et bond for M = Ni, Pd. The possibility of side reactions such as chelate formation with the polar functionality and oligomerization of the active species after acrylonitrile insertion are explored. The diimine ring system N--N = -NR' 'CR(1)CR(2)NR' ' with R' ' = 2,6-C(6)H(3)(i-Pr)(2) and R(1),R(2) = Me was functionalized by adding one or two anionic groups (BF(3)(-), etc.) in place of i-Pr on the aryl rings or by replacing one Me diimine backbone group (R(1)) with BH(3)(-). The objective of this investigation is computationally to design catalysts for ethylene/acrylonitrile copolymerization that have activities that are comparable to that of the cationic Ni(II) diimine or at least the Pd(II) diimine Brookhart system for ethylene homopolymerization. Complexes that might meet this objective are discussed.
- Published
- 2005
26. In Situ TA-MS Study of the Six-Membered-Ring-Based Growth of Carbon Nanotubes with Benzene Precursor
- Author
-
Yong Yang, Weijie Ji, Zheng Hu, Hua Xu, Xizhang Wang, Xin Chen, Qiang Wu, Yi Chen, and Yajun Tian
- Subjects
chemistry.chemical_classification ,Nanotechnology ,General Chemistry ,Chemical vapor deposition ,Carbon nanotube ,Photochemistry ,Biochemistry ,Catalysis ,Dissociation (chemistry) ,law.invention ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Hydrocarbon ,chemistry ,law ,Dehydrogenation ,Benzene ,Thermal analysis - Abstract
By using the in situ thermal analysis-mass spectroscopic technique, combined with transmission electron microscopic characterization of the carbon nanotube (CNT) product, we have studied the chemical vapor deposition (CVD) growth of CNTs with Fe-Co/gamma-Al2O3 catalyst and benzene precursor in the range of room temperature to 700 degrees C. The growth process has been clearly illuminated, which starts from the reduction of catalyst around 645 degrees C followed by the dissociation of carbon-hydrogen bonds of benzene and the sequential growth of CNTs. A surprising fact is that no possible hydrocarbon species derived from benzene was detected, indicating that the carbon-carbon bond was not broken under our experimental conditions. All of the experimental results strongly reinforce the six-membered-ring-based growth model, and a schematic elucidation is presented accordingly. This in situ study not only reveals the unique and convincing information directly related to the growth mechanism from the involved chemistry, but also provides a powerful way to clarify the mechanism of CVD synthesis of CNTs with other precursors.
- Published
- 2003
27. Self-adjustable crystalline inorganic nanocoils
- Author
-
Peng-peng Wang, Jing Zhuang, Xun Wang, and Yong Yang
- Subjects
Nanostructure ,Surface Properties ,Superlattice ,Nanowire ,chemistry.chemical_element ,Nanotechnology ,General Chemistry ,Microstructure ,Biochemistry ,Catalysis ,Nanostructures ,Colloid and Surface Chemistry ,Nanocrystal ,chemistry ,Ribbon ,Particle Size ,Crystallization ,Indium ,Macromolecule - Abstract
Biomacromolecules such as proteins, although extremely complex in microstructure, can crystallize into macro-sized crystals after self-adjusting their shapes, based on which the structure of biology is built. Inorganic nanowires/nanoribbons with a similar one-dimensional topology but much simpler structures can hardly be as flexible as macromolecules when constructing superlattice structures because of their inherent rigidity. Here we report the synthesis of crystalline indium sulfide nanoribbon-based nanocoils that are formed by spontaneous self-coiling of ultrathin nanoribbons. The nanostructures are flexible and appear as relatively random coils because of their ultrathin ribbon structures (~0.9 nm in thickness) with high aspect ratios. Moreover, the nanocoils can self-adjust their shapes and assemble into two-dimensional superlattices and three-dimensional supercrystals in solution. The ultrathin nanocoils are expected to bring new insights into the use of flexible nanocrystals as building blocks for constructing superstructures.
- Published
- 2013
28. CO2-induced degradation of amine-containing adsorbents: reaction products and pathways
- Author
-
Yong Yang, Abdelhamid Sayari, and Aliakbar Heydari-Gorji
- Subjects
Polyethylenimine ,Diffuse reflectance infrared fourier transform ,Chemistry ,General Chemistry ,Biochemistry ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Adsorption ,Diamine ,Urea ,Organic chemistry ,Degradation (geology) ,Amine gas treating ,Mesoporous material ,Nuclear chemistry - Abstract
A comprehensive study was conducted to investigate the stability of a wide variety of mesoporous silica-supported amine-containing adsorbents in the presence of carbon dioxide under dry conditions. CO(2)-induced degradation of grafted primary and secondary monoamines (pMono, sMono), diamines with one primary and one secondary amines (Diamine) and triamine with one primary and two secondary amines (TRI) as well as different impregnated polyamines such as branched and linear polyethylenimine (BPEI and LPEI) and polyallylamine (PALL) was investigated using extensive CO(2) adsorption-desorption cycling as well as diffuse reflectance infrared Fourier transform (DRIFT) and (13)C CP MAS NMR measurements. Except for sMono, all other supported amines underwent significant deactivation in the presence of dry CO(2) under mild conditions. In all cases, the decrease in CO(2) uptake was associated with the formation of urea linkages at the expense of amine groups. The urea-containing species were identified, and the deactivation pathways were delineated.
- Published
- 2012
29. CMPs as scaffolds for constructing porous catalytic frameworks: a built-in heterogeneous catalyst with high activity and selectivity based on nanoporous metalloporphyrin polymers
- Author
-
Yong Yang, Donglin Jiang, and Long Chen
- Subjects
chemistry.chemical_classification ,Chemistry ,Nanoporous ,Sulfoxide ,General Chemistry ,Heterogeneous catalysis ,Biochemistry ,Catalysis ,Conjugated microporous polymer ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Chemical engineering ,Organic chemistry ,Mesoporous material ,Selectivity ,Alkyl - Abstract
This article describes the synthesis and functions of a porous catalytic framework based on conjugated micro- and mesoporous polymers with metalloporphyrin building blocks (FeP-CMP). FeP-CMP was newly synthesized via a Suzuki polycondensation reaction and was developed as a heterogeneous catalyst for the activation of molecular oxygen to convert sulfide to sulfoxide under ambient temperature and pressure. FeP-CMP is intriguing because the polymer skeleton itself is built from catalytic moieties and serves as built-in catalysts, bears inherent open nanometer-scale pores that are accessible for substrates, and possesses large surface areas (1270 m(2) g(-1)) that facilitate the transformation reaction. It is highly efficient with high conversion (up to 99%) and a large turnover number (TON = 97,320), is widely applicable to various sulfides covering from aromatic to alkyl and cyclic substrates, displays high selectivity (up to 99%) to form corresponding sulfoxides, and is highly chemoselective for the oxidation of a sulfide group even in the coexistence of other oxidative functionalities. Owing to the covalent linkages between catalytic sites in the frameworks, FeP-CMP can be recycled with good retention of its porous structure and allows for large-scale transformation. These unique characteristics clearly originate from the covalent porous catalytic framework structure and demonstrate the usefulness of CMPs in the exploration of built-in heterogeneous catalysts, a new potential of these materials that have thus far been reported to exhibit noteworthy gas adsorption functions.
- Published
- 2010
30. Simple synthesis route to monodispersed SBA-15 silica rods
- Author
-
Abdelhamid Sayari, Bao-Hang Han, and Yong Yang
- Subjects
Pore size ,SIMPLE (dark matter experiment) ,Chemistry ,Scanning electron microscope ,Nanotechnology ,General Chemistry ,Molecular sieve ,Biochemistry ,Catalysis ,Rod ,Inorganic salts ,Colloid and Surface Chemistry ,Chemical engineering ,Transmission electron microscopy ,Aluminosilicate - Abstract
A simple, flexible, reproducible, high-yielding (ca. 100%) synthesis of hexagonally facetted SBA-15 straight rods with uniform sizes (ca. 1.5 x 0.4 mum) under static conditions without using inorganic salts is provided. This method affords rodlike particles with temperature-dependent pore sizes ranging from 5.8 to 12.5 nm but with similar external dimensions. This work shows that in order to prepare short monodispersed SBA-15 rods, (i) the absence of stirring is essential, (ii) the temperature of the first stage should not exceed 60 degrees C, and (iii) addition of inorganic salts is not required.
- Published
- 2004
31. Is Mo Involved in Hydride Binding by the Four-Electron Reduced (E4) Intermediate of the Nitrogenase MoFe Protein?
- Author
-
Dennis R. Dean, Dmitriy Lukoyanov, Lance C. Seefeldt, Zhi-Yong Yang, and Brian M. Hoffman
- Subjects
Models, Molecular ,Molybdoferredoxin ,chemistry.chemical_element ,Electrons ,Biochemistry ,Article ,Catalysis ,Cofactor ,Substrate Specificity ,law.invention ,Colloid and Surface Chemistry ,law ,Intermediate state ,Electron paramagnetic resonance ,Molybdenum ,Azotobacter vinelandii ,biology ,Hydride ,Electron Spin Resonance Spectroscopy ,Substrate (chemistry) ,Nitrogenase ,General Chemistry ,biology.organism_classification ,Crystallography ,chemistry ,biology.protein ,Oxidation-Reduction ,Protein Binding - Abstract
We here report the first direct evidence addressing the possible involvement of Mo in substrate interactions during catalytic turnover. When the alpha-70(Ile) MoFe protein is freeze-trapped during H(+) reduction under Ar, the majority of the resting state EPR signal from the molybdenum-iron cofactor (FeMo-co) disappears and is replaced by the S = 1/2 signal of an intermediate that has been shown to be the E(4) MoFe state, which is activated for N(2) binding and reduction through the accumulation of 4 electrons/protons by FeMo-co. ENDOR studies of E(4) showed that it contains two hydrides bound to FeMo-co. We calculate that Mo involvement in hydride binding would require a vector-coupling coefficient for Mo of |K(Mo)| approximately0.2 and determine K(Mo) for the E(4) intermediate state through 35 GHz ENDOR measurements of a (95)Mo enriched MoFe protein, further comparing the results with those for the E(0) resting state. The experiments show that Mo of the resting-state FeMo-co is perturbed by the alpha-70(Ile) substitution and that the isotropic (95)Mo hyperfine coupling in E(4) is a(iso) approximately 4 MHz, less than that for the resting state. The decrease in a(iso) for (95)Mo of E(4) from the already small value in the resting state MoFe protein strongly suggests that the resting Mo(IV) is not one-electron reduced during the accumulation of the four electrons of E(4). In any case, the effective K for Mo is very small; |K(Mo)| approximately0.04, at least 5-fold less than the lower bound required for Mo to be involved in forming a Mo-H-Fe, hydride. As the hydride couplings also are both far too small and of the wrong symmetry to be associated with a terminal hydride on Mo, we may thus conclude that Mo does not participate in binding a hydride of the catalytically central E(4) intermediate and that only Fe ions are involved. Nonetheless, the response of the Mo coupling to subtle conformational changes in E(0) and to the formation of E(4) suggests that Mo is intimately involved in tuning the geometric and electronic properties of FeMo-co in these states.
- Published
- 2010
32. Reversible Photoinduced Reductive Elimination of H2 from the Nitrogenase Dihydride State, the E4(4H) Janus Intermediate.
- Author
-
Lukoyanov, Dmitriy, Hoffman, Brian M., Khadka, Nimesh, Zhi-Yong Yang, Seefeldt, Lance C., and Dean, Dennis R.
- Published
- 2016
- Full Text
- View/download PDF
33. Inhibition of Non-ATG Translational Events in Cells via Covalent Small Molecules Targeting RNA.
- Author
-
Wang-Yong Yang, Wilson, Henry D., Velagapudi, Sai Pradeep, and Disney, Matthew D.
- Subjects
- *
COVALENT bonds , *IONIC bonds , *RIBOSOMAL DNA , *RNA , *ORGANIC compounds - Abstract
One major class of disease-causing RNAs is expanded repeating transcripts. These RNAs cause diseases via multiple mechanisms, including: (i) gain-of-function, in which repeating RNAs bind and sequester proteins involved in RNA biogenesis and (ii) repeat associated non-ATG (RAN) translation, in which repeating transcripts are translated into toxic proteins without use of a canonical, AUG, start codon. Herein, we develop and study chemical probes that bind and react with an expanded r(CGG) repeat (r(CGG)exp) present in a 5' untranslated region that causes fragile X-associated tremor/ataxia syndrome (FXTAS). Reactive compounds bind to r(CGG)exp in cellulo as shown with Chem-CLIP-Map, an approach to map small molecule binding sites within RNAs in cells. Compounds also potently improve FXTAS-associated pre-mRNA splicing and RAN translational defects, while not affecting translation of the downstream open reading frame. In contrast, oligonucleotides affect both RAN and canonical translation when they bind to r(CGG)exp, which is mechanistically traced to a decrease in polysome loading. Thus, designer small molecules that react with RNA targets can be used to profile the RNAs to which they bind in cells, including identification of binding sites, and can modulate several aspects of RNA-mediated disease pathology in a manner that may be more beneficial than oligonucleotides. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
34. Identification of a Key Catalytic Intermediate Demonstrates That Nitrogenase Is Activated by the Reversible Exchange of N2 for H2.
- Author
-
Lukoyanov, Dmitriy, Zhi-Yong Yang, Khadka, Nimesh, Dean, Dennis R., Seefeldt, Lance C., and Hoffman, Brian M.
- Subjects
- *
INTERMEDIATES (Chemistry) , *NITROGENASES , *ELECTRON paramagnetic resonance spectroscopy , *CHEMICAL relaxation , *ELIMINATION reactions , *DIAZENES - Abstract
Freeze-quenching nitrogenase during turnover with N2 traps an S = 1/2 intermediate that was shown by ENDOR and EPR spectroscopy to contain N2 or a reduction product bound to the active-site molybdenum--iron cofactor (FeMo-co). To identify this intermediate (termed here EG), we turned to a quench-cryoannealing relaxation protocol. The trapped state is allowed to relax to the resting E0 state in frozen medium at a temperature below the melting temperature; relaxation is monitored by periodically cooling the sample to cryogenic temperature for EPR analysis. During -50 °C cryoannealing of EG prepared under turnover conditions in which the concentrations of N2 and H2 ([H2], [N2]) are systematically and independently varied, the rate of decay of EG is accelerated by increasing [H2] and slowed by increasing [N2] in the frozen reaction mixture; correspondingly, the accumulation of EG is greater with low [H2] and/or high [N2]. The influence of these diatomics identifies EG as the key catalytic intermediate formed by reductive elimination of H2 with concomitant N2 binding, a state in which FeMo-co binds the components of diazene (an N-N moiety, perhaps N2 and two [e-/H+] or diazene itself). This identification combines with an earlier study to demonstrate that nitrogenase is activated for N2 binding and reduction through the thermodynamically and kinetically reversible reductive-elimination/oxidative-addition exchange of N2 and with an implied limiting stoichiometry of eight electrons/protons for the reduction of N2 to two NH3. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
35. Identification of a Key Catalytic Intermediate Demonstrates That Nitrogenase Is Activated by the Reversible Exchange of N2 for H2.
- Author
-
Lukoyanov, Dmitriy, Zhi-Yong Yang, Khadka, Nimesh, Dean, Dennis R., Seefeldt, Lance C., and Hoffman, Brian M.
- Published
- 2015
- Full Text
- View/download PDF
36. CO2-Induced Degradation of Amine-Containing Adsorbents: Reaction Products and Pathways.
- Author
-
Sayari, Abdelhamid, Heydari-Gorji, Aliakbar, and Yong Yang
- Published
- 2012
- Full Text
- View/download PDF
37. ENDOR/HYSCORE Studies of the Common Intermediate Trapped during Nitrogenase Reduction of N2H2, CH3N2H, and N2H4 Support an Alternating Reaction Pathway for N2 Reduction.
- Author
-
Lukoyanov, Dmitriy, Dikanov, Sergei A., Zhi-Yong Yang, Barney, Brett M., Samoilova, Rimma I., Narasimhulu, Kuppala V., Dean, Dennis R., Seefeldt, Lance C., and Hoffman, Brian M.
- Published
- 2011
- Full Text
- View/download PDF
38. Is Mo Involved in Hydride Binding by the Four-Electron Reduced (E4) Intermediate of the Nitrogenase MoFe Protein?
- Author
-
Lukoyanov, Dmitriy, Zhi-Yong Yang, Dean, Dennis R., SeefeIdt, Lance C., and Hoffman, Brian M.
- Subjects
- *
MOLYBDENUM , *HYDRIDES , *ELECTRON nuclear double resonance , *IRON ions , *INTERMEDIATES (Chemistry) , *IRON proteins - Abstract
The article presents a study which examines whether molybdenum (Mo) is involved during the catalytic turnover particularly in hydride binding. The study used electron nuclear double resonance (ENDOR) measurements of the 95Mo that is improved with molybdenum-iron (MoFe) protein to determine KMo for the intermediate state of E4. The result indicates that Mo is not involved in hydride binding of E4 intermediate but the iron (Fe) ions were involved.
- Published
- 2010
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.