10 results on '"Ralph J DeBerardinis"'
Search Results
2. Mechanisms and Implications of Metabolic Heterogeneity in Cancer
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Ralph J. DeBerardinis and Jiyeon Kim
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0301 basic medicine ,Physiology ,T-Lymphocytes ,Context (language use) ,Computational biology ,Biology ,Therapeutic targeting ,Article ,Epigenesis, Genetic ,03 medical and health sciences ,0302 clinical medicine ,Neoplasms ,medicine ,Tumor Microenvironment ,Animals ,Humans ,Molecular Biology ,Epigenesis ,Tumor microenvironment ,Metabolic heterogeneity ,Cancer ,Cell Biology ,medicine.disease ,Mitochondria ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Metabolic regulation ,Cancer cell ,Glycolysis ,030217 neurology & neurosurgery - Abstract
Tumors display reprogrammed metabolic activities that promote cancer progression. We currently possess a limited understanding of the processes governing tumor metabolism in vivo and of the most efficient approaches to identify metabolic vulnerabilities susceptible to therapeutic targeting. While much of the literature focuses on stereotyped, cell-autonomous pathways like glycolysis, recent work emphasizes heterogeneity and flexibility of metabolism between tumors and even within distinct regions of solid tumors. Metabolic heterogeneity is important because it influences therapeutic vulnerabilities and may predict clinical outcomes. This Review describes current concepts about metabolic regulation in tumors, focusing on processes intrinsic to cancer cells and on factors imposed upon cancer cells by the tumor microenvironment. We discuss experimental approaches to identify subtype-selective metabolic vulnerabilities in preclinical cancer models. Finally, we describe efforts to characterize metabolism in primary human tumors, which should produce new insights into metabolic heterogeneity in the context of clinically relevant microenvironments.
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- 2019
3. Isotope Tracing of Human Clear Cell Renal Cell Carcinomas Demonstrates Suppressed Glucose Oxidation In Vivo
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Jeffrey A. Cadeddu, Elizabeth A. Maher, Craig R. Malloy, Kumar Pichumani, Yair Lotan, Robert Bachoo, Kevin D. Courtney, Vitaly Margulis, Divya Bezwada, Vamsidhara Vemireddy, Jennifer Wimberly, Alexander M. Funk, Tomoyuki Mashimo, Ivan Pedrosa, Payal Kapur, Ralph J. DeBerardinis, and Sarah S. McNeil
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0301 basic medicine ,Adult ,Physiology ,Citric Acid Cycle ,Kidney ,03 medical and health sciences ,medicine ,Humans ,Glycolysis ,Molecular Biology ,Carcinoma, Renal Cell ,Aged ,Carbon Isotopes ,Chemistry ,Cancer ,Cell Biology ,Middle Aged ,Pyruvate dehydrogenase complex ,medicine.disease ,Warburg effect ,Kidney Neoplasms ,Citric acid cycle ,Clear cell renal cell carcinoma ,030104 developmental biology ,medicine.anatomical_structure ,Glucose ,Editorial ,Cancer research ,Oxidation-Reduction ,Clear cell - Abstract
Summary Clear cell renal cell carcinoma (ccRCC) is the most common form of human kidney cancer. Histological and molecular analyses suggest that ccRCCs have significantly altered metabolism. Recent human studies of lung cancer and intracranial malignancies demonstrated an unexpected preservation of carbohydrate oxidation in the tricarboxylic acid (TCA) cycle. To test the capacity of ccRCC to oxidize substrates in the TCA cycle, we infused 13C-labeled fuels in ccRCC patients and compared labeling patterns in tumors and adjacent kidney. After infusion with [U-13C]glucose, ccRCCs displayed enhanced glycolytic intermediate labeling, suppressed pyruvate dehydrogenase flow, and reduced TCA cycle labeling, consistent with the Warburg effect. Comparing 13C labeling among ccRCC, brain, and lung tumors revealed striking differences. Primary ccRCC tumors demonstrated the highest enrichment in glycolytic intermediates and lowest enrichment in TCA cycle intermediates. Among human tumors analyzed by intraoperative 13C infusions, ccRCC is the first to demonstrate a convincing shift toward glycolytic metabolism.
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- 2018
4. Inhibition of Cancer Cell Proliferation by PPARγ Is Mediated by a Metabolic Switch that Increases Reactive Oxygen Species Levels
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Shan Wang, Ralf Kittler, Kenneth E. Huffman, Dinesh K. Singh, Zeping Hu, Jessica Sudderth, Ryan Carstens, Caroline G. Humphries, Ralph J. DeBerardinis, Nishi Srivastava, Hien Q. Nguyen, and Rahul K. Kollipara
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Pyruvate decarboxylation ,Peroxisome proliferator-activated receptor gamma ,endocrine system diseases ,Physiology ,Transplantation, Heterologous ,Trimetazidine ,Peroxisome proliferator-activated receptor ,PDK4 ,Antineoplastic Agents ,Mice, SCID ,Retinoblastoma Protein ,Article ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Mice, Inbred NOD ,Cell Line, Tumor ,Neoplasms ,Animals ,Humans ,Protein Interaction Maps ,Phosphorylation ,Molecular Biology ,030304 developmental biology ,Cell Proliferation ,chemistry.chemical_classification ,0303 health sciences ,Reactive oxygen species ,biology ,Pioglitazone ,Fatty Acids ,Retinoblastoma protein ,nutritional and metabolic diseases ,Lipid metabolism ,Cell Cycle Checkpoints ,Cell Biology ,3. Good health ,PPAR gamma ,chemistry ,Biochemistry ,030220 oncology & carcinogenesis ,Cancer cell ,biology.protein ,Cancer research ,Thiazolidinediones ,Lipid Peroxidation ,Reactive Oxygen Species ,Protein Kinases - Abstract
SummaryThe nuclear receptor peroxisome-proliferation-activated receptor gamma (PPARγ), a transcriptional master regulator of glucose and lipid metabolism, inhibits the growth of several common cancers, including lung cancer. In this study, we show that the mechanism by which activation of PPARγ inhibits proliferation of lung cancer cells is based on metabolic changes. We found that treatment with the PPARγ agonist pioglitazone triggers a metabolic switch that inhibits pyruvate oxidation and reduces glutathione levels. These PPARγ-induced metabolic changes result in a marked increase of reactive oxygen species (ROS) levels that lead to rapid hypophosphorylation of retinoblastoma protein (RB) and cell-cycle arrest. The antiproliferative effect of PPARγ activation can be prevented by suppressing pyruvate dehydrogenase kinase 4 (PDK4) or β-oxidation of fatty acids in vitro and in vivo. Our proposed mechanism also suggests that metabolic changes can rapidly and directly inhibit cell-cycle progression of cancer cells by altering ROS levels.
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- 2014
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5. Proliferating Cells Conserve Nitrogen to Support Growth
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Ralph J. DeBerardinis
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0301 basic medicine ,Physiology ,Nitrogen ,chemistry.chemical_element ,Glutamic Acid ,Biology ,Models, Biological ,03 medical and health sciences ,Glutamate Dehydrogenase ,Animals ,Humans ,Molecular Biology ,Glutamate catabolism ,Cell Proliferation ,Cell growth ,Glutamate dehydrogenase ,Glutamate receptor ,Cell Biology ,Glutamic acid ,Metabolism ,DNA ,Cell biology ,030104 developmental biology ,Biochemistry ,chemistry ,Intracellular - Abstract
Glutamate provides a large intracellular pool of carbon and nitrogen. Coloff et al. (2016) find that proliferating cells shift from a nitrogen-wasting to a nitrogen-sparing mode of glutamate catabolism, highlighting the exquisite tethering of proliferative signals to metabolism.
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- 2016
6. Inosine Monophosphate Dehydrogenase Dependence in a Subset of Small Cell Lung Cancers
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John D. Minna, Adi F. Gazdar, Kenneth E. Huffman, Kailong Li, Milind D. Chalishazar, Xin Liu, Lauren G. Zacharias, Abbie S. Ireland, Jiyeon Kim, Trudy G. Oliver, Zeping Hu, Akash K. Kaushik, Feng Cai, Fang Huang, Wen Gu, Xiaolei Shi, Ralph J. DeBerardinis, Min Ni, and Ling Cai
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0301 basic medicine ,Inosine monophosphate ,Lung Neoplasms ,Physiology ,Cell ,Guanosine ,Article ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,IMP Dehydrogenase ,IMP dehydrogenase ,Cell Line, Tumor ,Basic Helix-Loop-Helix Transcription Factors ,medicine ,Animals ,Humans ,Molecular Biology ,Transcription factor ,Mice, Knockout ,Oncogene ,Cell growth ,Cell Biology ,Small Cell Lung Carcinoma ,respiratory tract diseases ,030104 developmental biology ,medicine.anatomical_structure ,chemistry ,Cell culture ,Cancer research ,Heterografts - Abstract
Small cell lung cancer (SCLC) is a rapidly lethal disease with few therapeutic options. We studied metabolic heterogeneity in SCLC to identify subtype-selective vulnerabilities. Metabolomics in SCLC cell lines identified two groups correlating with high or low expression of the Achaete-scute homolog-1 (ASCL1) transcription factor (ASCL1(High) and ASCL1(Low)), a lineage oncogene. Guanosine nucleotides were elevated in ASCL1(Low) cells and tumors from genetically engineered mice. ASCL1(Low) tumors abundantly express the guanosine biosynthetic enzymes inosine monophosphate dehydrogenase-1 and -2 (IMPDH1 and IMPDH2). These enzymes are transcriptional targets of MYC, which is selectively overexpressed in ASCL1(Low) SCLC. IMPDH inhibition reduced RNA polymerase I-dependent expression of pre-ribosomal RNA and potently suppressed ASCL1(Low) cell growth in culture, selectively reduced growth of ASCL1(Low) xenografts, and combined with chemotherapy to improve survival in genetic mouse models of ASCL1(Low)/MYC(High) SCLC. The data define an SCLC subtype-selective vulnerability related to dependence on de novo guanosine nucleotide synthesis.
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- 2018
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7. The Biology of Cancer: Metabolic Reprogramming Fuels Cell Growth and Proliferation
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Ralph J. DeBerardinis, Craig B. Thompson, Georgia Hatzivassiliou, and Julian J. Lum
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Cell type ,Physiology ,Biology ,Models, Biological ,Phosphatidylinositol 3-Kinases ,03 medical and health sciences ,0302 clinical medicine ,Neoplasms ,Lipid biosynthesis ,Animals ,Humans ,Protein kinase B ,Molecular Biology ,PI3K/AKT/mTOR pathway ,Cell Proliferation ,030304 developmental biology ,0303 health sciences ,Cell growth ,Cell Biology ,Cell cycle ,Cell biology ,Biochemistry ,Anaerobic glycolysis ,030220 oncology & carcinogenesis ,Hypoxia-Inducible Factor 1 ,Signal transduction ,Signal Transduction - Abstract
SummaryCell proliferation requires nutrients, energy, and biosynthetic activity to duplicate all macromolecular components during each passage through the cell cycle. It is therefore not surprising that metabolic activities in proliferating cells are fundamentally different from those in nonproliferating cells. This review examines the idea that several core fluxes, including aerobic glycolysis, de novo lipid biosynthesis, and glutamine-dependent anaplerosis, form a stereotyped platform supporting proliferation of diverse cell types. We also consider regulation of these fluxes by cellular mediators of signal transduction and gene expression, including the phosphatidylinositol 3-kinase (PI3K)/Akt/mTOR system, hypoxia-inducible factor 1 (HIF-1), and Myc, during physiologic cell proliferation and tumorigenesis.
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- 2008
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8. Cytochrome c Oxidase Activity Is a Metabolic Checkpoint that Regulates Cell Fate Decisions During T Cell Activation and Differentiation
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Patricia M. Zerfas, Julio Gomez-Rodriguez, Tatyana N. Tarasenko, Robert S. Balaban, Raul Covian, Francisca Diaz, Salvatore DiMauro, Peter J. McGuire, Ralph J. DeBerardinis, Emanuele Barca, Senta M. Kapnick, Jessica Sudderth, Susan E. Pacheco, and Mary Kay Koenig
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Male ,0301 basic medicine ,Mitochondrial Diseases ,Physiology ,T-Lymphocytes ,T cell ,Mitochondrial disease ,immunometabolism ,oxidative phosphorylation ,Oxidative phosphorylation ,Mitochondrion ,Biology ,Cell fate determination ,Lymphocyte Activation ,Article ,Electron Transport Complex IV ,Mice ,03 medical and health sciences ,COX10 ,cytochrome c oxidase ,mitochondria ,mitochondrial disease ,T-lymphocytes ,Molecular Biology ,Cell Biology ,medicine ,Animals ,Humans ,Cytochrome c oxidase ,Mice, Knockout ,Alkyl and Aryl Transferases ,Effector ,Membrane Proteins ,Cell Differentiation ,medicine.disease ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,Apoptosis ,biology.protein ,Female - Abstract
T cells undergo metabolic reprogramming with major changes in cellular energy metabolism during activation. In patients with mitochondrial disease, clinical data were marked by frequent infections and immunodeficiency, prompting us to explore the consequences of oxidative phosphorylation dysfunction in T cells. Since cytochrome c oxidase (COX) is a critical regulator of OXPHOS, we created a mouse model with isolated dysfunction in T cells by targeting a gene, COX10, that produces mitochondrial disease in humans. COX dysfunction resulted in increased apoptosis following activation in vitro and immunodeficiency in vivo. Select T cell effector subsets were particularly affected; this could be traced to their bioenergetic requirements. In summary, the findings presented herein emphasize the role of COX particularly in T cells as a metabolic checkpoint for cell fate decisions following T cell activation, with heterogeneous effects in T cell subsets. In addition, our studies highlight the utility of translational models that recapitulate human mitochondrial disease for understanding immunometabolism.
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- 2017
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9. Serine Metabolism: Some Tumors Take the Road Less Traveled
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Ralph J. DeBerardinis
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chemistry.chemical_classification ,Physiology ,Metabolism ,Cell Biology ,Biology ,Biosynthetic enzyme ,Serine ,Enzyme ,chemistry ,Biochemistry ,Cancer cell ,Phosphoglycerate dehydrogenase ,Reprogramming ,Gene ,Molecular Biology - Abstract
Cancer cells display a reprogramming of metabolism that facilitates growth but addicts them to key enzyme activities. Two studies in Nature and Nature Genetics find that the gene encoding the serine biosynthetic enzyme phosphoglycerate dehydrogenase (PHGDH) is amplified in a subset of cancers and contributes to tumor cell growth.
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- 2011
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10. Analysis of Tumor Metabolism Reveals Mitochondrial Glucose Oxidation in Genetically Diverse Human Glioblastomas in the Mouse Brain In Vivo
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Elizabeth A. Maher, Levi B. Good, Vamsidhara Vemireddy, José M. Matés, Hyeon-Man Baek, Tomoyuki Mashimo, Robert Bachoo, Kartik N. Rajagopalan, Melissa Maddie, Ralph J. DeBerardinis, Xiao Li Yang, Isaac Marin-Valencia, Zhenze Zhao, Ling Cai, Kimmo J. Hatanpaa, Juan M. Pascual, Craig R. Malloy, Chendong Yang, Steve K. Cho, Benjamin P. Tu, and Bruce E. Mickey
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0303 health sciences ,Physiology ,Cell Biology ,Metabolism ,Mitochondrion ,Biology ,Pyruvate dehydrogenase complex ,Article ,Cell biology ,Citric acid cycle ,03 medical and health sciences ,0302 clinical medicine ,Cell metabolism ,Gluconeogenesis ,Biochemistry ,In vivo ,030220 oncology & carcinogenesis ,Cancer research ,Glycolysis ,Molecular Biology ,Ex vivo ,030304 developmental biology ,030215 immunology - Abstract
SummaryDysregulated metabolism is a hallmark of cancer cell lines, but little is known about the fate of glucose and other nutrients in tumors growing in their native microenvironment. To study tumor metabolism in vivo, we used an orthotopic mouse model of primary human glioblastoma (GBM). We infused 13C-labeled nutrients into mice bearing three independent GBM lines, each with a distinct set of mutations. All three lines displayed glycolysis, as expected for aggressive tumors. They also displayed unexpected metabolic complexity, oxidizing glucose via pyruvate dehydrogenase and the citric acid cycle, and using glucose to supply anaplerosis and other biosynthetic activities. Comparing the tumors to surrounding brain revealed obvious metabolic differences, notably the accumulation of a large glutamine pool within the tumors. Many of these same activities were conserved in cells cultured ex vivo from the tumors. Thus GBM cells utilize mitochondrial glucose oxidation during aggressive tumor growth in vivo.
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- 2012
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