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2. Biotransformation of aromatic and heterocyclic amides by amidase of whole cells of Rhodococcus sp. MTB5: Biocatalytic characterization and substrate specificity.
- Author
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Ismailsab, Mukram, T. R., Monisha, Reddy, Pooja V., M., Santoshkumar, Nayak, Anand S., and Karegoudar, Timmanagouda B.
- Subjects
RHODOCOCCUS ,BIOTRANSFORMATION (Metabolism) ,ARAMID fibers ,AMIDASES ,MOLECULAR structure of amides ,BIOCATALYSIS ,BIOCHEMICAL substrates - Abstract
In this study, an amidohydrolase activity of amidase in whole cells ofRhodococcussp. MTB5 has been used for the biotransformation of aromatic, monoheterocyclic and diheterocyclic amides to corresponding carboxylic acids. Benzoic acid, nicotinic acid and pyrazinoic acid are carboxylic acids which have wide industrial applications. The amidase of this strain is found to be inducible in nature. The biocatalytic conditions for amidase present in the whole cells of MTB5 were optimized against benzamide. The enzyme exhibited optimum activity in 50 mM potassium phosphate buffer pH 7.0. The optimum temperature and substrate concentrations for this enzyme were 50 °C and 50 mM, respectively. The enzyme was quite stable for more than 6 h at 30 °C. It showed substrate specificity against different amides, including aliphatic, aromatic and heterocyclic amides. Under optimized reaction conditions, the amidase is capable of converting 50 mM each of benzamide, nicotinamide and pyrazinamide to corresponding acids within 100, 160 and 120 min, respectively, using 5 mg dry cell mass (DCM) per mL of reaction mixture. The respective percent conversion of these amides was 95.02%, 98.00% and 98.44% achieved by whole cells. The amidase in whole cells can withstand as high as 383 mM concentration of product in a reaction mixture and above which it undergoes product feedback inhibition. The results of this study suggest thatRhodococcussp. MTB5 amidase has the potential for large-scale production of carboxylic acids of industrial value. [ABSTRACT FROM PUBLISHER]
- Published
- 2017
- Full Text
- View/download PDF
3. Development of a biosensor for urea assay based on amidase inhibition, using an ion-selective electrode.
- Author
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Barbosa, Ana Rita and Karmali, Amin
- Subjects
BIOSENSORS ,UREA ,AMIDASES ,ION selective electrodes ,HYDROLYSIS ,ACETAMIDE ,ORGANIC acids - Abstract
A biosensor for urea has been developed based on the observation that urea is a powerful active-site inhibitor of amidase, which catalyzes the hydrolysis of amides such as acetamide to produce ammonia and the corresponding organic acid. Cell-free extract from Pseudomonas aeruginosa was the source of amidase (acylamide hydrolase, EC 3.5.1.4) which was immobilized on a polyethersulfone membrane in the presence of glutaraldehyde; an ion-selective electrode for ammonium ions was used for biosensor development. Analysis of variance was used for optimization of the biosensor response and showed that 30 μμL of cell-free extract containing 7.47 mg protein mL
−−1 , 2 μμL of glutaraldehyde (5%, v/v) and 10 μμL of gelatin (15%, w/v) exhibited the highest response. Optimization of other parameters showed that pH 7.2 and 30 min incubation time were optimum for incubation of membranes in urea. The biosensor exhibited a linear response in the range of 4.0--10.0 μμM urea, a detection limit of 2.0 μμM for urea, a response time of 20 s, a sensitivity of 58.245 % per μμM urea and a storage stability of over 4 months. It was successfully used for quantification of urea in samples such as wine and milk; recovery experiments were carried out which revealed an average substrate recovery of 94.9%. The urea analogs hydroxyurea, methylurea and thiourea inhibited amidase activity by about 90%, 10% and 0%, respectively, compared with urea inhibition. [ABSTRACT FROM AUTHOR]- Published
- 2011
- Full Text
- View/download PDF
4. Substrate interaction with recombinant amidase from Pseudomonas aeruginosa during biocatalysis.
- Author
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Pacheco, Rita, Karmali, Amin, Serralheiro, M. Luísa M., and Haris, Parvez I.
- Subjects
RECOMBINANT proteins ,AMIDASES ,PSEUDOMONAS aeruginosa ,CATALYSIS ,FOURIER transform infrared spectroscopy ,HYDROGEN bonding ,CHEMICAL reactions - Abstract
The interaction of a variety of substrates with Pseudomonas aeruginosa native amidase (E.C. 3.5.1.4), overproduced in an Escherichia coli strain, was investigated using difference FTIR spectroscopy. The amides used as substrates showed an increase in hydrogen bonding upon association in multimers, which was not seen with esters. Evidence for an overall reduction or weakening of hydrogen bonding while amide and ester substrates are interacting with the enzyme is presented. The results describe a spectroscopic approach for analysis of substrate--amidase interaction and in situ monitoring of the hydrolysis and transferase reaction when amides or esters are used as substrates. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
5. Stability and catalytic properties of chemically modified pig trypsin.
- Author
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Colleary, Sandra and Ó'Fágáin, Ciarán
- Subjects
TRYPSIN ,PEPTIDE synthesis ,AMIDASES ,ENZYME activation ,CATALYSTS ,HYDROLYSIS ,THERMAL analysis ,LABORATORY swine ,ORGANIC solvents - Abstract
Pig trypsin was chemically modified with the bifunctional compound ethylene glycol-bis(succinic acid N-hydroxysuccinimide ester) to yield EG-trypsin. EG-trypsin showed greater thermal stability (100% active beyond 100 min at 55°°C; native only 53% active at 100 min) together with slightly increased tolerance toward some organic solvents. Arg/Lys hydrolysis ratio changed little. Esterase/amidase activity ratio of EG-trypsin in buffer was 11-fold greater than that of native pig trypsin, but 5-fold less in 30% v/v acetonitrile. In buffer, EG-trypsin synthesized the dipeptide benzoyl-Arg-Leu-NH
2 at a 3-fold higher rate than native trypsin, but native trypsin outperformed EG-trypsin in 30% v/v acetonitrile. [ABSTRACT FROM AUTHOR]- Published
- 2009
- Full Text
- View/download PDF
6. Biosensor for acrylamide based on an ion-selective electrode using whole cells of Pseudomonas aeruginosa containing amidase activity.
- Author
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Silva, Nelson, Gil, Dulce, Karmali, Amin, and Matos, Manuel
- Subjects
BIOSENSORS ,ACRYLAMIDE ,ION selective electrodes ,CELLS ,PSEUDOMONAS aeruginosa ,AMIDASES - Abstract
The aim of this work was to develop a biosensor for toxic amides using whole cells of Pseudomonas. aeruginosa containing amidase activity, which catalyses the hydrolysis of amides such as acrylamide producing ammonia and the corresponding organic acid. Whole cells immobilized in several types of membrane in the presence of glutaraldehyde and an ammonium ion-selective electrode, were used for biosensor development. This biosensor exhibited a linear response in the range of 0.1-4.0×10-3 M of acrylamide, a detection limit of 4.48×10-5 M acrylamide, a response time of 55 s, a sensitivity of 58.99 mV mM-1 of acrylamide and a maximum t1/2 of 54 days. The selectivity of this biosensor towards other amides was investigated, which revealed that it cross-reacted with acetamide and formamide, but no activity was detected with phenylacetamide, p-nitrophenylacetamide and acetanilide. It was successfully used for quantification of acrylamide in real industrial effluents and recovery experiments were carried out which revealed an average substrate recovery of 93.3%. The biosensor is cheap since whole cells of P. aeruginosa can be used as source of amidase activity. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
7. Surface hydrolysis of polyamide with a new polyamidase from Beauveria brongniartii.
- Author
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Almansa, E., Heumann, S., Eberl, A., Kaufmann, F., Cavaco-paulo, A., and Gübitz, G. M.
- Subjects
EXTRACELLULAR enzymes ,ULTRAFILTRATION ,CHROMATOGRAPHIC analysis ,GEL permeation chromatography ,CHEMISTRY education ,PROTEOLYTIC enzymes ,AMIDASES ,HYDROLYSIS ,ANIONS - Abstract
Twelve fungi were screened for the potential of their extracellular enzymes to increase the hydrophilicity of polyamide (PA) materials. The most pronounced increase in hydrophilicity was found for enzymes from Beauveria brongniartii and B. bassiana. The 55 kDa polyamidase from B. brongniartii was purified using ultrafiltration, anion exchange chromatography and size exclusion chromatography. This polyamidase was able to hydrolyse adipic acid bishexylamide and various typical amidase substrates, but did not show protease activity. In contrast, the 27 kDa protease from B. brongniartii did not show activity on PA. The improvement of hydrophilicity due to hydrolysis with the 55 kDa polyamidase from B. brongniartii based on rising height was 11 cm for PA 6 Perlon fibres and 5 cm for PA 6.6 Nylon. The drop dissipation measurement corroborated the improvement of the hydrophilicity giving 7 s and less than 1 s for the two enzyme treated materials, respectively. The surface tension s of Perlon increased from 46.1 to 67.4 mNm after enzyme treatment. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
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