706 results on '"Johnson, Timothy P."'
Search Results
2. LISA telescope development status and flight design
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Coyle, Laura E., Matsuura, Shuji, Perrin, Marshall D., Keski-Kuha, Ritva A., Derosa, Ryan T., Boyce, Kevin R., Hadjimichael, Theodore J., Howard, Joseph M., Ivanov, Joseph M., Johnson, Timothy A., Lutter, Joshua G., Papa, Jonathan C., Sankar, Shannon R., and Weaver, Andrew
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- 2024
- Full Text
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3. Dynamics of Electric Polarization and Relaxation of Ions at Humid Calcite Surfaces.
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Legg, Benjamin A., Zhu, Yue, Nakouzi, Elias, Johnson, Timothy. C., and Rosso, Kevin M.
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- 2024
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- View/download PDF
4. Optical constants measurements of liquids for modeling aerosolized threats
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Guicheteau, Jason A., Howle, Christopher R., Myers, Tanya L., Lockwood, Schuyler P., Baker, Tracy, Primera-Pedrozo, Oliva M., Bernacki, Bruce E., Johnson, Timothy J., and Myers, Tanya L.
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- 2024
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5. Optimal spectral resolution for solids and liquids using FT and other infrared spectrometers: How much resolution do you really need?
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Guicheteau, Jason A., Howle, Christopher R., Myers, Tanya L., Forland, Brenda M., Hughey, Kendall D., Wilhelm, Michael J., Williams, Olivia N., Cappello, Benjamin F., Gaspar, Connor L., Myers, Tanya L., Baker, Tracy J., Sharpe, Steve, and Johnson, Timothy J.
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- 2024
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6. Deriving the infrared complex refractive indices of organic powders for optical modeling: comparison of methods
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Velez-Reyes, Miguel, Messinger, David W., Peterson, Kelly A., Bernacki, Bruce E., Saunders, Danielle L., Erickson, Jeremy D., Lockwood, Schuyler P., Johnson, Timothy J., and Myers, Tanya L.
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- 2024
- Full Text
- View/download PDF
7. Dynamics of Electric Polarization and Relaxation of Ions at Humid Calcite Surfaces
- Author
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Legg, Benjamin A., Zhu, Yue, Nakouzi, Elias, Johnson, Timothy. C., and Rosso, Kevin M.
- Abstract
Mobile ions at mineral surfaces can respond to an applied electric field, adopting a new distribution that effectively represents polarization of the electrical double layer. When the field is released, the ions relax to their equilibrium distribution. In both cases, the dynamics are characteristic of the interface. However, current models of electrokinetic phenomena are not sufficiently robust to accurately predict collective ion dynamics at structurally and chemically specific mineral–water interfaces. In this study, we use electrostatic force microscopy (EFM) to investigate the dynamics of ion relaxation at hydrated calcite (104) surfaces at controlled relative humidity (RH). Electrically biased probes are used to polarize the distributions of calcium and carbonate ions that are intrinsic to this interface across a range of RH values. Polarization kinetics are tracked by monitoring the tip–sample force gradient during charging, and EFM imaging is used to characterize the spatial relaxation dynamics after the applied field is released. Electrostatic finite element modeling of the sample/probe system across length-scales from nanometers to millimeters reproduces the observed stretched exponential charging response. Together, these results allow us to estimate the ion diffusivities at the interface across a wide range of RH values. These diffusivities increase by roughly 5 orders of magnitude as the RH is increased from 5 to 90%, highlighting the critical role of adsorbed water for surface ion solvation that enables ion mobility.
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- 2024
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8. Structure and Dynamics of Aqueous Electrolytes at Quartz (001) and (101) Surfaces.
- Author
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Simonnin, Pauline G., Kerisit, Sebastien N., Nakouzi, Elias, Johnson, Timothy C., and Rosso, Kevin M.
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- 2024
- Full Text
- View/download PDF
9. Encounter rates and catch‐and‐release mortality of steelhead in the Snake River basin.
- Author
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Lubenau, William J., Johnson, Timothy R., Bowersox, Brett J., Copeland, Timothy, McCormick, Joshua L., and Quist, Michael C.
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WATERSHEDS ,DEATH rate ,RAINBOW trout ,FISH mortality ,SNAKES - Abstract
Objective: The potential influence (i.e., impact rate) of catch‐and‐release fisheries on wild steelhead Oncorhynchus mykiss is poorly understood and is a function of the abundance of wild fish, how many fish are encountered by anglers (i.e., encounter rate), and the mortality of fish that are caught and released. In Idaho, estimates of wild steelhead encounter rates have been derived using the number of wild and hatchery steelhead passing Lower Granite Dam, the number of hatchery steelhead harvested, and the number of hatchery steelhead caught and released. The method includes assumptions that hatchery and wild steelhead have equal encounter rates and catch‐and‐release mortality is 5% for wild steelhead. Here, we investigated wild and hatchery steelhead encounter rates by anglers, estimated catch‐and‐release mortality, and concatenated both aspects to examine how existing recreational steelhead fisheries influence wild steelhead mortality. Methods: We sampled, tagged, and released 1,251 spawn‐year 2020 (SY2020) and 1,956 spawn‐year 2021 (SY2021) adult steelhead at Lower Granite Dam with T‐bar anchor tags and passive integrated transponder (PIT) tags to estimate steelhead encounter rates and catch‐and‐release mortality. Differences in survival of caught steelhead and those not reported as caught were evaluated using detections at various locations (e.g., PIT arrays, weirs). Result: Estimated encounter rates were 43.7% (95% credible interval; 28.2%, 100.0%) for wild fish and 46.7% (29.6%, 100.0%) for adipose‐clipped fish in SY2020. In SY2021, encounter rates were 47.2% (32.4%, 100.0%) for wild fish and 52.3% (37.1%, 100.0%) for adipose‐clipped fish. Based on detections of caught fish and those not reported as caught, catch‐and‐release mortality of wild steelhead was estimated to be 1.6% (0.0%, 5.2%). Wild steelhead impact rates were 0.7% (0.0%, 2.7%) in SY2020 and 0.7% (0.0%, 2.8%) in SY2021. Conclusion: Estimated rates of impact on wild steelhead were consistent and low across years despite major differences in the structure of the fisheries. Our results suggest assuming that encounter rates are equal between hatchery and wild steelhead, and that steelhead catch‐and‐release mortality is 5%, will likely lead to a conservative estimate of the wild steelhead impact occurring from catch‐and‐release fisheries. Impact statementWith wild steelhead numbers declining in many parts of North America, a dilemma between providing angling opportunity and wild steelhead conservation can develop. We show that encounter rate plays a larger role than mortality regarding catch‐and‐release angling on overall impact rates. Our method provides a direct, reliable estimate of encounter rates across multiple scales. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
10. Structure and Dynamics of Aqueous Electrolytes at Quartz (001) and (101) Surfaces
- Author
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Simonnin, Pauline G., Kerisit, Sebastien N., Nakouzi, Elias, Johnson, Timothy C., and Rosso, Kevin M.
- Abstract
Understanding and describing reactivity at mineral–water interfaces, such as ion adsorption, the kinetics of dissolution, or surface charge development, depends on our ability to improve the accuracy of electrical double-layer (EDL) models. While molecular dynamics (MD) simulations are routinely used to investigate the structure and energetics of adsorbed ions comprising the EDL, less attention has been paid to their self-diffusion dynamics, which can uniquely inform coupling to interfacial reactions. Here, we use MD to investigate both the organization and diffusion dynamics of water and electrolyte ions (NaCl, KCl, CaCl2) on hydroxylated quartz (001) and (101) surfaces, which allow us to assess surface structural effects of corrugation and silanol density. Complementary atomic force microscopy measurements are also used to probe the interfacial solution structure. We found that the inner- versus outer-sphere complex formation depends on the cation size and charge but not necessarily on hydration energies. The participation of surface silanols in the hydration spheres of Na+and K+generally indicates their preference for inner-sphere complexation, but this is strongly dependent on the orientation of the surface considered through its influence on the organization and dynamics of adsorbed water layers. In particular, the surface orientation substantially affects the diffusive behavior of near-surface water. Na+is found to decrease the mobility of water in the first layer, consistent with the increasing frequency of hydrolysis implied by the faster quartz dissolution rates observed in experiments via the well-known salt effect. Our results are also in good agreement with the observed dissolution rate of quartz vs the surface adsorption strength measured by Dove and Nix. This study sets the stage for a forthcoming study examining how the dynamics at quartz/electrolyte interfaces are influenced by externally applied electric fields.
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- 2024
- Full Text
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11. Encounter rates and catch‐and‐releasemortality of steelhead in the Snake River basin
- Author
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Lubenau, William J., Johnson, Timothy R., Bowersox, Brett J., Copeland, Timothy, McCormick, Joshua L., and Quist, Michael C.
- Abstract
The potential influence (i.e., impact rate) of catch‐and‐release fisheries on wild steelhead Oncorhynchus mykissis poorly understood and is a function of the abundance of wild fish, how many fish are encountered by anglers (i.e., encounter rate), and the mortality of fish that are caught and released. In Idaho, estimates of wild steelhead encounter rates have been derived using the number of wild and hatchery steelhead passing Lower Granite Dam, the number of hatchery steelhead harvested, and the number of hatchery steelhead caught and released. The method includes assumptions that hatchery and wild steelhead have equal encounter rates and catch‐and‐release mortality is 5% for wild steelhead. Here, we investigated wild and hatchery steelhead encounter rates by anglers, estimated catch‐and‐release mortality, and concatenated both aspects to examine how existing recreational steelhead fisheries influence wild steelhead mortality. We sampled, tagged, and released 1,251 spawn‐year 2020 (SY2020) and 1,956 spawn‐year 2021 (SY2021) adult steelhead at Lower Granite Dam with T‐bar anchor tags and passive integrated transponder (PIT) tags to estimate steelhead encounter rates and catch‐and‐release mortality. Differences in survival of caught steelhead and those not reported as caught were evaluated using detections at various locations (e.g., PIT arrays, weirs). Estimated encounter rates were 43.7% (95% credible interval; 28.2%, 100.0%) for wild fish and 46.7% (29.6%, 100.0%) for adipose‐clipped fish in SY2020. In SY2021, encounter rates were 47.2% (32.4%, 100.0%) for wild fish and 52.3% (37.1%, 100.0%) for adipose‐clipped fish. Based on detections of caught fish and those not reported as caught, catch‐and‐release mortality of wild steelhead was estimated to be 1.6% (0.0%, 5.2%). Wild steelhead impact rates were 0.7% (0.0%, 2.7%) in SY2020 and 0.7% (0.0%, 2.8%) in SY2021. Estimated rates of impact on wild steelhead were consistent and low across years despite major differences in the structure of the fisheries. Our results suggest assuming that encounter rates are equal between hatchery and wild steelhead, and that steelhead catch‐and‐release mortality is 5%, will likely lead to a conservative estimate of the wild steelhead impact occurring from catch‐and‐release fisheries. Impact statementWith wild steelhead numbers declining in many parts of North America, a dilemma between providing angling opportunity and wild steelhead conservation can develop. We show that encounter rate plays a larger role than mortality regarding catch‐and‐release angling on overall impact rates. Our method provides a direct, reliable estimate of encounter rates across multiple scales. With wild steelhead numbers declining in many parts of North America, a dilemma between providing angling opportunity and wild steelhead conservation can develop. We show that encounter rate plays a larger role than mortality regarding catch‐and‐release angling on overall impact rates. Our method provides a direct, reliable estimate of encounter rates across multiple scales.
- Published
- 2024
- Full Text
- View/download PDF
12. Quantifying the Impact of Electric Fields on the Local Structure and Migration of Potassium Ions at the Orthoclase (001) Surface.
- Author
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Sassi, Michel, Kerisit, Sebastien N., Simonnin, Pauline G., Legg, Benjamin A., Nakouzi, Elias, Zhu, Yue, Johnson, Timothy C., and Rosso, Kevin M.
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- 2023
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13. How influential is the role of oligotrophication on the integrity of fish assemblages in the littoral zone?
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Shimoda, Yuko, Cai, Haibin, Fernando, Yasasi, Okoli, Akunne, Xu, Zhuowei, Koops, Marten, Johnson, Timothy B., and Arhonditsis, George B.
- Abstract
Food web theory predicts that one of the consequences of oligotrophication is the decline in fisheries following the establishment of nutrient-deficient conditions and low biogenic production. However, emerging evidence suggests that more complex trophic interactions, induced by plankton composition, dietary diversification, temporal and spatial heterogeneity, variations in fish age and size structure can lead to ecosystem responses that deviate from theoretical predictions; especially in the shallow littoral zone. In this study, two end-to-end modelling strategies are used to characterize potential food web structural shifts and overall ecosystem productivity in response to oligotrophication. Our modelling strategy draws upon empirical and theoretical evidence from the Bay of Quinte, a semi-enclosed embayment in northeastern Lake Ontario that has been subjected to phosphorus (P) abatement strategies in the 1970s. We first show that the role of food abundance has been a primary factor shaping fish production, but the fish community gradually responded to the reduced availability of pelagic staples of their diet by displaying greater reliance upon alternative sources, including benthic and other autochthonous (or even allochthonous) food items. Our analysis further suggests that degree of diet overlap between competing trophic guilds can significantly modulate realized biomass levels. The composition of the autotrophic community is another major confounding factor that can induce significant variations from the predicted food web productivity patterns in response to oligotrophication. Overall, our analysis suggests that the proposed reduction of the ambient total phosphorus levels may not necessarily trigger a significant decline in fish biomass in the Bay of Quinte. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
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14. Particulate Filters for Combustion Engines to Mitigate Global Warming. Estimating the Effects of a Highly Efficient but Underutilized Tool
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Mayer, Andreas C.R., Mayer, Joerg, Wyser, Max, Legerer, Fritz, Czerwinski, Jan, Lutz, Thomas W., Johnson, Timothy V., and Jacobson, Mark Z.
- Abstract
Particulate filters are state-of-the-art and are used in internal combustion engines worldwide to eliminate carcinogenic nanoparticles. Health studies estimate that this prevents about one million premature deaths annually. What is less known and often neglected is their equally powerful effect on mitigating global warming. This is because these ultrafine particles form stable aerosols in the atmosphere, absorb sunlight, and heat the atmosphere due to their jet-black color. In addition, once deposited on the ground, they reduce albedo especially when deposited on ice or snow. They also thin clouds and reduce their reflectivity. In this paper, we estimate for the first time the cumulative effect of more than 300 million particulate filters currently installed globally on vehicles, showing that, while they reduce ~ 0.5 Mt of soot per year, their effect on slowing global warming is equivalent to reducing 1 Bt of CO2per year or about one-third of the CO2emissions of all European Union Member States combined. Despite its strong potential, this highly efficient, proven, and low-cost technology is not yet regarded as a priority in curbing global warming, even though it is possibly the easiest and quickest to implement. If used in retrofitting more diesel and petrol engines worldwide, it could triple the aforementioned effect. While modern internal combustion engines are on track to be replaced with zero-emission vehicles, it is also crucial, and we strongly suggest that, in the interim, all remaining internal fossil fuel combusting engines be fitted with particulate filters. Evidence is presented in this paper that the potential benefits of such retrofit on climate and human health will be impactful and lasting.
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- 2024
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15. The Dynamics of a Shavian Universe: Founding and Evolution of the John Bennett Shaw Collection at the University of Minnesota.
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JOHNSON, TIMOTHY J.
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BOOK collecting ,SHERLOCK Holmes fiction ,BOOK collectors ,AUTHORS - Published
- 2023
16. A Cost-Effective Microfluidic Device to Teach the Principles of Electrophoresis and Electroosmosis.
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Shaffer, Tyler A., Herrada, Carlos U., Walker, Avery M., Casto-Boggess, Laura D., Holland, Lisa A., Johnson, Timothy R., Jones, Megan E., and Elshamy, Yousef S.
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- 2023
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17. Burkholderiaspp.-based biopesticide controls wireworms (Coleoptera: Elateridae) in potatoes
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Pagani, Mika K, Johnson, Timothy B, Doughty, Hélène B, McIntyre, Kelly C, and Kuhar, Thomas P
- Abstract
Wireworms (Coleoptera: Elateridae) are economically significant pests of potatoes (Solanum tuberosum), damaging the marketable portion of the crop by feeding and tunneling into tubers. While conventional potato growers use the few registered synthetic insecticides to control wireworms, certified organic growers are left with less options due to the limited effectiveness of the available insecticides. Biologically derived pesticides provide an additional alternative for both systems. Certain gram-negative proteobacteria, such as Burkholderiaspp., possess insecticidal compounds. However, very little is known about their efficacy on wireworms. From 2018 to 2021, we conducted experiments in Virginia to assess the efficacy of a Burkholderiaspp.-based commercial pesticide, Majestene, as a wireworm control in potatoes. In a lab experiment, soil drench application of this insecticide at a rate of 66 g a.i. per 1 liter resulted in 30% wireworm mortality and significantly reduced wireworm feeding damage on potato tubers. In the field, in-furrow applications of Burkholderiaspp. at a rate of 17.66 kg a.i. per ha significantly reduced wireworm damage to tubers in 2 of 7 field experiments conducted. By comparison, the commercial standard insecticide, bifenthrin, significantly reduced tuber damage in 3 of the 7 field experiments. Our study demonstrates the prospect for proteobacteria-derived insecticides for control of wireworms and potentially other soil-dwelling insects. In conclusion, findings present growers with another option to combat wireworm pressure, especially in organic systems.
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- 2023
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18. Quantifying the Impact of Electric Fields on the Local Structure and Migration of Potassium Ions at the Orthoclase (001) Surface
- Author
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Sassi, Michel, Kerisit, Sebastien N., Simonnin, Pauline G., Legg, Benjamin A., Nakouzi, Elias, Zhu, Yue, Johnson, Timothy C., and Rosso, Kevin M.
- Abstract
Developing an understanding of the response of mineral/water interfaces to applied electric fields is central to detecting and interpreting signatures of interfacial processes in the subsurface. Here, we focus density functional theory calculations on understanding K+cation binding and migration across the (001) surface of orthoclase feldspar under various applied electric fields with and without surface hydration. The calculations reveal how water ligands labilize surface K+cations for migration while also increasing their sensitivity to electric field effects on the binding energy at different surface sites. The calculations also show how the direction and strength of the electric field systematically affect surface cation mobility, sorption, and hydration behavior. Specifically, electric fields directed toward the surface reduce the energy gap between the different surface potassium sites, favor hydration, and shorten K+residence time at their crystallographic site. The findings help fill a major knowledge gap in the impact of electric fields on mineral/water interface structure and dynamics more generally, featuring, in this case, a commonly found type of feldspar involved in a multitude of atmospheric and geochemical processes.
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- 2023
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19. Efficacy of Antibiotic and Non-antibiotic Interventions in Preventing and Treating Necrotic Enteritis in Broiler Chickens: A Systematic Review.
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Bueno, Irene, Ricke, Isabel, Hwang, Haejin, Smith, Emily, Nault, André, Johnson, Timothy J., and Singer, Randall S.
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NECROTIC enteritis ,BROILER chickens ,ANTIBIOTICS ,CLOSTRIDIUM perfringens ,JEJUNUM - Abstract
The objective of this systematic review was to compare the efficacy of antibiotic and non-antibiotic alternatives in the prevention and treatment of necrotic enteritis (NE) in broiler chickens. In vivo experimental and observational studies that compared the administration of non-antibiotic compounds with antibiotics to prevent or treat NE in broiler chickens and that evaluated mortality and/or clinical or subclinical NE outcome measures were eligible. Four electronic databases were searched in December 2019 and updated in October 2021. Retrieved studies were evaluated in two phases: abstract and design screening. Data were then extracted from included studies. Risk of bias was assessed by outcome following the Cochrane Risk of Bias 2.0 tool. A meta-analysis was not conducted due to heterogeneity across interventions and outcomes. The non-antibiotic and antibiotic groups were compared at the outcome level for individual studies using the mean difference and 95% confidence interval (CI) calculated post hoc from raw data. In total, 1282 studies were originally identified, and 40 were included in the final review. The overall risk of bias for the 89 outcomes was either "high" (n = 34) or "some concerns" (n = 55). Individual study comparisons showed a beneficial trend toward the antibiotic group for reduced mortality, NE lesion scores (overall, jejunum, and ileum), Clostridium perfringens counts, and for most histologic measurements (duodenum, jejunum, and ileum villi height, and jejunum and ileum crypt depth). The non-antibiotic groups showed a beneficial trend for NE duodenum lesion scores and duodenum crypt depth measurements. Based on this review, there is a trend that mostly favors antibiotic compounds in preventing and/or treating NE, but the evidence also suggests no difference when comparing them with non-antibiotic alternatives. Studies assessing this research question were heterogeneous in their intervention conditions and outcomes measured, and there were key aspects of the experimental design not reported in some of the studies. Eficacia de las intervenciones con antibióticos y compuestos no antibióticos para prevenir y tratar la enteritis necrótica en pollos de engorde: Una revisión sistemática El objetivo de esta revisión sistemática fue comparar la eficacia de antibióticos y alternativas a los antibióticos en la prevención y tratamiento de la enteritis necrótica (NE) en pollos de engorde. Se incluyeron estudios experimentales in vivo y estudios observacionales que compararon la administración de compuestos no considerados antibióticos con compuestos antibióticos usados para prevenir o tratar la enteritis necrótica en pollos de engorde, y que evaluaran mortalidad, signos clínicos, u otros resultados subclínicos. Se buscaron referencias en cuatro bases de datos bibliográficos en Diciembre de 2019 y por segunda vez en Octubre de 2021. Los estudios que se encontraron se evaluaron en dos fases: resumen y diseño del estudio de escrutinio. Posteriormente se extrajeron los datos de aquellos estudios que se incluyeron después del escrutinio. Se evaluó el riesgo de sesgos siguiendo la herramienta de Cochrane Risk of Bias 2.0. No se pudo realizar un meta-análisis debido a la heterogeneidad de las intervenciones y de los resultados de los estudios incluidos. Los grupos de compuestos no antibióticos y de antibióticos se compararon con base a los resultados individuales de cada estudio usando la diferencia entre medias e intervalos de confianza al 95%, calculados post-hoc usando los datos originales. Se identificaron un total de 1282 estudios, y 40 fueron finalmente incluidos en la revisión. El riesgo de sesgos para el total de los 89 resultados individuales fue alto (n = 34) o con "ciertos problemas" (n = 55). Las comparaciones individuales entre estudios mostraron una tendencia beneficiosa hacia el grupo de antibióticos en términos de mortalidad reducida, puntaje de lesiones de enteritis necrótica (total, yeyuno e íleo), conteos de Clostridium perfringens, así como para la mayoría de las medidas histológicas (altura de las vellosidades del duodeno, yeyuno e íleo, y profundidad de la cripta del yeyuno e íleo). El grupo de no antibióticos mostró una tendencia beneficiosa para el puntaje de lesiones de enteritis necrótica del duodeno y para las medidas de profundidad de la cripta del duodeno. Según esta revisión, hay una tendencia que favorece al grupo de antibióticos en la prevención y/o tratamiento de enteritis necrótica, pero la evidencia también sugiere que no hay diferencia entre los grupos. Los estudios incluidos en la comparación eran muy heterogéneos en cuanto a las condiciones de las intervenciones y a los resultados que se midieron, además de que algunos aspectos importantes del diseño experimental en algunos de los estudios no se reportaron. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
20. A Cost-Effective Microfluidic Device to Teach the Principles of Electrophoresis and Electroosmosis
- Author
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Shaffer, Tyler A., Herrada, Carlos U., Walker, Avery M., Casto-Boggess, Laura D., Holland, Lisa A., Johnson, Timothy R., Jones, Megan E., and Elshamy, Yousef S.
- Abstract
Electrophoresis is integral to analytical and biochemistry experiences in undergraduate education; however, fundamental principles of the method are often taught in upper-level laboratories through hands-on experiences. A laboratory activity is reported that teaches the concepts of electrophoretic mobility and electroosmotic flow. A single reuseable instrument, called a mini-E, costs 37 USD and consists of a DC power supply, a voltmeter, platinum electrodes, and a chip cast in polydimethylsiloxane. This activity uses common reagents costing only 0.02 USD per student. Experiments are devised that allow students to investigate the properties of electrophoretic flow and electroosmotic flow by separating the two commonly used food dyeing agents Brilliant Blue FCF and Allura Red AC in vinegar and in a solution of ammonium hydroxide. A dark-purple mixture of these dyes is separated into red and blue bands that are easily visualized. The migration order of the dyes differs when the separation is performed under conditions of reversed polarity and suppressed electroosmotic flow (vinegar) compared to conditions of normal polarity and active electroosmotic flow (ammonium hydroxide). When delivered to chemistry majors, students had a significant gain in their ability to apply the concepts of electroosmosis and electrophoresis to predict analyte migration. Although this activity targets upper-level chemistry content, it can also be adapted for other laboratory experiences.
- Published
- 2023
- Full Text
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21. Preparation and characterization methods of thin layer samples for standoff detection
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Guicheteau, Jason A., Howle, Christopher R., Primera-Pedrozo, Oliva M., Erickson, Jeremy D., Lonergan, Charmayne E., Burton, Sarah D., Bernacki, Bruce E., Myers, Tanya L., and Johnson, Timothy J.
- Published
- 2023
- Full Text
- View/download PDF
22. Comparison of Tumescent Anesthesia Versus Pectoral Nerve Block in Bilateral Reduction Mammaplasty
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McLaughlin, Caroline M., Hughes, Alexa J., Lee, Charles C., Perez Holguin, Rolfy A., Warfield, Dennis J., Henry, Cathy R., Johnson, Timothy S., and Potochny, John D.
- Published
- 2023
- Full Text
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23. Comparative trophic ecology of nearshore juvenile salmonids in Lake Ontario.
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Nawrocki, Brent M., Zhu, Changhai, and Johnson, Timothy B.
- Abstract
The trophic ecology of juvenile salmonids in nearshore Lake Ontario is not well understood. We used stomach content and stable isotope diet and niche metrics, as well as condition metrics to understand the trophic ecology of juvenile Atlantic salmon (Salmo salar), brown trout (Salmo trutta), Chinook salmon (Oncorhynchus tshawytscha), coho salmon (Oncorhynchus kisutch), rainbow trout (Oncorhynchus mykiss), and lake trout (Salvelinus namaycush). Salmonids had comparable length-weight slopes and stomach mass, and allometric patterns existed between fork-length and both relative stomach content mass and energy density for all species. Interspecific differences existed with respect to diet, and the magnitude of difference generally increased with increasing body size. Small sized salmonid (fork length < 100 mm) diets mainly consisted of Diptera (% volume = 66 – 100; prey isotope %: 11.7 – 78.4), while large sized salmonids (fork length 200 – 300 mm) consumed fish (% volume = 20–100; prey isotope % = 21.5 – 42.7). Salmonids exhibited high interspecific niche overlap, with lake trout (SEA B = 22.9 ‰
2 ) and brown trout (18.6 ‰2 ) having the largest isotopic niche size, and Atlantic salmon having the smallest (2.7 ‰2 ). Our study addressed a knowledge gap in trophic ecology between mostly stream-dwelling juvenile and open lake adult salmonid life stages, revealing differences in diet but comparable condition metrics which suggests different strategies to optimise performance in the nearshore environment. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
24. A Low-Cost and Simple Demonstration of Freezing Point Depression and Colligative Properties with Common Salts and Ice Cream.
- Author
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Johnson, Timothy R., Shaffer, Tyler A., Holland, Lisa A., Veltri, Lindsay M., Lucas, John A., Elshamy, Yousef S., and Rutto, Patrick K.
- Published
- 2022
- Full Text
- View/download PDF
25. Spatial and seasonal variability in trophic relationships and carbon sources of two key invertebrate species in Lake Ontario.
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Uzarski, Donald R., Fisk, Aaron T., Heuvel, Cecilia E., O'Malley, Brian P., Weidel, Brian C., Larocque, Sarah M., and Johnson, Timothy B.
- Abstract
Mysids (Mysis diluviana) and dreissenids (Dreissena polymorpha and mostly D. bugensis) are important invertebrate taxa in the food webs of the Laurentian Great Lakes but there are uncertainties about the seasonal and spatial variability in their stable isotope signatures. We quantified δ
13 C and δ15 N in 304 mysid and 366 dreissenid samples across five spatial ecoregions, varying site depth, and three seasons (spring, summer, and fall) in Lake Ontario in 2012 and 2013. Particulate organic matter (POM) was also collected across site depth and season from the Deep Hole ecoregion for use as an isotopic baseline. Lipid normalization models for δ13 C were generated for both taxa to reduce lipid bias in our statistical analysis. Season was a significant predictor of POM stable isotopes, with δ13 C lower in the summer and δ15 N decreasing from spring to summer before increasing into fall. Mysid lipid normalized δ13 C varied by site depth and ecoregion while δ15 N decreased across season and did not vary by site depth or ecoregion. Dreissenid stable isotopes varied significantly across season, depth, and ecoregion, with site depth having positive relationship with δ15 N. Mysids and dreissenids were two trophic positions higher than POM based on δ15 N; this comparison was restricted to the one region where POM was collected. Isotopic variability suggested selective feeding within POM and differing trophic pathways between mysids and dreissenids. Collecting an appropriate taxon across all observed variables to serve as an isotopic baseline, particularly in spatial and temporal studies, is critical to the correct interpretation of trophic relationships. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
26. Formal Reporting of Identity-Based Harassment at an Academic Medical Center: Incidence, Barriers, and Institutional Responses.
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Vargas, Emily A., Cortina, Lilia M., Settles, Isis H., Brassel, Sheila T., Perumalswami, Chithra R., Johnson, Timothy R.B., and Jagsi, Reshma
- Published
- 2022
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27. A Data-Driven Approach to Predicting 5-Aminolevulinic Acid-Induced Fluorescence and World Health Organization Grade in Newly Diagnosed Diffuse Gliomas.
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Müther, Michael, Jaber, Mohammed, Johnson, Timothy D., Orringer, Daniel A., and Stummer, Walter
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- 2022
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28. Developing a short screener for acquiescent respondents.
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Lee, Sunghee, Alvarado-Leiton, Fernanda, Yu, Wenshan, Davis, Rachel, and Johnson, Timothy P.
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Background: Acquiescent response style (ARS) refers to survey respondents' tendency to choose response categories agreeing to questions regardless of their content and is hypothesized as a stable respondent trait. While what underlies acquiescence is debatable, the effect of ARS on measurement is clear: bias through artificially increased agreement ratings. With certain population subgroups (e.g., racial/ethnic minorities in the U.S.) are associated with systemically higher ARS, it causes concerns for research involving those groups. For this reason, it may be necessary to classify respondents as acquiescers or a nonacquiescers, which allows independent analysis or accounting for this stylistic artifact. However, this classification is challenging, because ARS is latent, observed only as a by-product of collected data.Objectives: To propose a screener that identifies respondents as acquiescers.Methods: With survey data collected for ARS research, various ARS classification methods were compared for validity as well as implementation practicality.Results: The majority of respondents was classified consistently into acquiescers or nonacquiescers under various classification methods.Conclusions: We propose a method based on illogical responses given to two balanced, theoretically distant multi-item measurement scales as a screener. [ABSTRACT FROM AUTHOR]- Published
- 2022
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29. Patterns in spatial use of land-locked Atlantic salmon (Salmo salar) in a large lake.
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Larocque, Sarah M., Lake, Colin, Johnson, Timothy B., and Fisk, Aaron T.
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Understanding the spatial use of reintroduced fish is useful for fisheries management and evaluating restoration success. Atlantic salmon (Salmo salar) were reintroduced into Lake Ontario in the 1990s; however, the movement ecology of these land-locked fish is unknown. Using acoustic telemetry and Floy tag mark-recaptures, we examined seasonal home range and space use of Atlantic salmon in Lake Ontario. Hatchery-raised adult Atlantic salmon were tagged with acoustic transmitters (n = 14; 8 with depth sensors) or Floy tags (n = 1915) and released. Both acoustic telemetry and Floy tag recaptures (n = 90) indicated cross lake movements, and home ranges encompassed nearly the entire lake in summer but was smaller in winter. Movements were nearshore (<2 km from shore) from spring to summer at ∼20 m bathymetric depths, with movements closer to shore in the fall, and further offshore (∼5.5 km from shore and 45 m bathymetric depths) in winter. Depth use was relatively shallow (<4 m) with occasional deeper dives (max = 28.5 m), and small diel vertical movements (1–5 m), moving deeper during daytime, consistent with ocean movements of Atlantic salmon. There appears to be spatial segregation among Atlantic salmon and other Lake Ontario salmonids, however, overlap likely occurs in nearshore waters during the spring. Wide-ranging movements of Atlantic salmon in binational (Canada/USA) waters reflects the importance of government agencies collaborating to ensure sustainable fisheries and the coordination of species restoration activities. This is the first study to provide detailed spatial use of Lake Ontario Atlantic salmon to assist in the management of this reintroduced species. [ABSTRACT FROM AUTHOR]
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- 2022
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30. Results of the collaborative Lake Ontario bloater restoration stocking and assessment, 2012–2020.
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Weidel, Brian C., Ackiss, Amanda S., Chalupnicki, Marc A., Connerton, Michael J., Davis, Steve, Dettmers, John M., Drew, Timothy, Fisk, Aaron T., Gordon, Roger, Hanson, S. Dale, Holden, Jeremy P., Holey, Mark E., Johnson, James H., Johnson, Timothy B., Lake, Colin, Lantry, Brian F., Loftus, Kevin K., Mackey, Gregg E., McKenna, James E., and Millard, Michael J.
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Bloater, Coregonus hoyi , are deepwater planktivores native to the Laurentian Great Lakes and Lake Nipigon. Interpretations of commercial fishery time series suggest they were common in Lake Ontario through the early 1900s but by the 1950s were no longer captured by commercial fishers. Annual bottom trawl surveys that began in 1978 and sampled extensively across putative bloater habitat only yielded one individual (1983), suggesting that the species had been locally extirpated. In 2012, a multiagency restoration program stocked bloater into Lake Ontario from gametes collected in Lake Michigan. From 2012 to 2020, 1,028,191 bloater were stocked into Lake Ontario. Bottom trawl surveys first detected stocked fish in 2015, and through 2020 ten bloater have been caught (total length mean = 129 mm, s.d. = 44 mm, range: 96–240 mm). Hatchery applied marks and genetic analyses confirmed the species identification and identified stocking location for some individuals. Trawl capture locations and acoustic telemetry suggested that stocked fish dispersed throughout the main lake within months or sooner, and the depth distribution of recaptured bloater was similar to historic distributions in Lake Ontario and other Great Lakes. Predicted bloater trawl catches, based on modeled population abundance and trawl survey efficiency, were similar to observed catches, suggesting that post-stocking survival is less than 20% and contemporary bottom trawl surveys can quantify bloater abundance at low densities and track restoration. [ABSTRACT FROM AUTHOR]
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- 2022
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31. Spatial and temporal variability in lake trout diets in Lake Ontario as revealed by stomach contents and stable isotopes.
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Nawrocki, Brent M., Metcalfe, Brent W., Holden, Jeremy P., Lantry, Brian F., and Johnson, Timothy B.
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Lake trout (Salvelinus namaycush) are an ecologically and economically important piscivore with reported differences in diet and feeding behaviour throughout its range. Eleven stomach content and stable isotope-based metrics were used to describe diets of 349 lake trout between two years (2013 and 2018) and among geographic zones (west, central, east, Kingston basin) in Lake Ontario. Using individual (e.g., volumetric, %V) and aggregate (e.g., index of relative importance, %IRI) diet metrics, we found an overwhelming dominance of alewife (Alosa pseudoharengus) in lake trout diets among some zones in 2013 (%V = 23.3 – 92.7; %IRI = 12.2 – 99.5) and all zones in 2018 (%V = 83.9 – 96.7; %IRI = 96.5 – 100). Round goby (Neogobius melanostomus) and rainbow smelt (Osmerus mordax) were secondary lake trout prey items with relative diet percentages only marginally reflected by spatial and temporal variation in prey abundance (round goby: %V = 1.0 – 33.3, %IRI = 0.1 – 13.2; rainbow smelt: %V = 2.5 – 54.0, %IRI = 0.1 – 54.0). Carbon (δ
13 C) and nitrogen (δ15 N) isotopic niche areas and orientations were similar across all year-zone combinations reinforcing temporal and spatial consistency in lake trout diet. The findings of this study advance the time series in describing Lake Ontario lake trout diets and can be used to complement stock assessments and management decisions associated with carrying capacity for the diverse salmonid community. [ABSTRACT FROM AUTHOR]- Published
- 2022
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32. 296 Effects of dietary antimicrobials on the ruminant gastrointestinal tract microbiome
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Vincent, Tyler J, Nolasco, Lester R, Suriyapha, Chaichana, Johnson, Timothy A, and Schoonmaker, Jon P
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Monensin, tylosin, and chlortetracycline (CTC) are antimicrobials frequently employed in high grain feedlot cattle diets to inhibit liver abscesses and enhance growth. However, increased public concerns regarding antibiotic resistance have created a pressing need to develop alternative strategies. A more mechanistic understanding of how antimicrobial drugs effect the microbiome in the ruminant gastrointestinal tract (GIT) may help develop effective alternatives. Therefore, the objective of this study was to determine changes in the GIT microbiome of grain-fed feedlot steers after antimicrobial drug administration. Thirty individually housed Angus x Simmental steers [body weight (BW) = 355 ± 16.8 kg] previously fed a 56% forage diet were immediately transitioned to a 93% concentrate diet and assigned to one of three treatments (10 steers/treatment): 1) control, without antibiotics, 2) 75 mg of tylosin and 200 mg of monensin per animal per day (TYLMON), and 3) 70 mg of CTC per animal per day. Fecal samples were collected on d 0, 7, 14, 28, 56, 112, and at slaughter and digesta were obtained from the rumen, jejunum, and cecum at slaughter. DNA was extracted from samples, amplified via 16S PCR, and sequenced. Jejunal samples had the least alpha diversity compared with ruminal, cecal, or fecal samples (P< 0.001). There were no differences in measures of alpha diversity in the ruminal, jejunal, or cecal digesta at slaughter (P≥ 0.10). However, overall measures of alpha diversity (Shannon entropy, observed features) in feces were greater in CTC-fed steers (P≤ 0.009) as well as in TYLMON-fed steers (P≤ 0.04) compared with control steers. Measures of alpha diversity for all treatments decreased in feces from d 0 to 7, then increased from d 7 to slaughter (time effect, (P≤ 0.001). There were no differences in fecal alpha diversity between treatment groups on d 0 (P≥ 0.50), but by d 28 both TYLMON and CTC treated steers had greater fecal alpha diversity compared with the control steers (P≤ 0.05). With regard to differential abundance, Phascolarctobacteriumand PrevotellaceaeUCG-003 were more abundant in feces of control steers relative to antimicrobial treated steers (P< 0.05). Bifidobacterium, Dorea, CAG-56, and ErysipelotrichaceaeUCG-003, were the 4 genera found to be in the greatest abundance in the feces of TYLMON-fed relative to control steers (P< 0.05). Akkermansia, Succinivibrio, and Turicbacterwere the 3 genera found to be in the greatest abundance in the feces of CTC-fed compared with control steers (P< 0.05). Taken together, these data suggest that differences in the microbiome associated with dietary antimicrobial treatment occur to a greater extent in the lower sections of the GIT, and that these changes in the microbiome occur after 28 d of feeding.
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- 2024
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33. 3 The impact of early-life cecal microbiota transplantation on injurious behaviors in egg-laying chickens
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Fu, Yuechi, Hu, Jiaying, Zhang, Huanmin, Erasmus, Marisa A, Cheng, Heng-wei, and Johnson, Timothy A
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Injurious behaviors in laying hens are a critical issue facing the poultry egg industry. Recent studies have shown that the gut microbiota influences host brain function and behavioral characteristics in humans and various animals. In laying hens, it has been reported that injurious behaviors (such as aggression, feather pecking and cannibalism) are associated with dysregulation of the microbiota-gut-brain axis. To further interrogate the role of the microbiota-gut-brain axis on bird behavior, we used two inbred layer chicken lines, 63 and 72 (line 72 displays more aggressive behavior), and transferred pooled cecal contents from either line to day of hatch chicks. Cecal microbiota transplantation (CMT) from each line was conducted once daily, by gavage, from d 1 to 10, then boosted once weekly from wk 3 to 5. We hypothesized that the cecal microbiota composition and animal behavior in recipient birds would be similar to that of their donor animals because of the microbiota-gut-brain axis. Microbial communities were compared using 16S rRNA gene amplicon sequencing, behavior was recorded in home cages as well as in paired aggression tests, and physiological measurements were taken from brain tissue and blood to measure levels of neurotransmitters and immune function. When examining the differences in the donor birds, hypothalamic serotonin and tryptophan concentrations were greater for line 63 compared with line 72 birds (P< 0.05). Plasma corticosterone, heterophil/lymphocyte ratios, and central norepinephrine concentrations were less for line 63 birds (P< 0.05). Cecal microbial diversity was not statistically different between the lines, but many bacterial taxa were differentially abundant between the two lines. After cecal transplantation, 63-CMT (recipient) birds displayed less aggressive behavior with a greater hypothalamic serotonergic activity at wk 5, similar to donor birds. Correspondingly, two amplicon sequence variants (ASVs) belonging to Lachnospiraceaeand one RuminococcaceaeUCG-005 ASV were positively correlated with the concentrations of brain tryptophan and serotonin, respectively. Along with greater aggression, 72-CMT birds seemed to have greater physical growth traits (increased body weight, ileal villus/crypt; P≤ 0.05), but decreased concentrations of brain norepinephrine and dopamine, and the greatest ileal serotonin turnover in the ileum at wk 5 (P< 0.05). ASVs belonging to Mollicutes RF39 and GCA-900066225 in 72-CMT birds were negatively correlated with the brain 5-hydroxyindoleacetic acid (5-HIAA) at wk 5, and one Bacteroides ASV was negatively correlated with plasma serotonin at wk 16. Meanwhile, 63-CMT birds potentially had better gut health and immune function (greater concentrations of ileal mucosal secretory IgA, plasma IL-10; P< 0.05). These results suggest linkages among serotonergic activity, stress response, innate immunity, and gut microbiota populations and that CMT could be a novel strategy for reducing aggressive behavior through regulating signaling along the microbiota-gut-brain axis.
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- 2024
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34. 185 Maternal live yeast supplementation protects newly weaned piglets against lipopolysaccharide challenge by regulating immune-associated milk proteins
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Fu, Yuechi, Casey, Theresa M, Johnson, Timothy A, Xie, Jun, Adeola, Olayiwola, and Ajuwon, Kolapo M
- Abstract
Sow milk serves as a crucial source of nutritional, immunological, and growth-promoting components for the piglets. Our previous studies established that maternal live yeast (LY) supplementation altered the expression of antioxidant and immune-regulatory genes in the intestinal mucosa of suckling piglets. The current study aimed to investigate the effects of maternal LY supplementation during late gestation and lactation on milk proteomic profile in dams and health of offspring under lipopolysaccharide (LPS) challenge. On d 77 of gestation, 40 sows were allocated to 2 dietary treatments: without (CON) or with LY supplementation at 0.05% of diet during gestation and 0.1% during lactation. Milk samples were collected on d 0, 10, and 18 post-partum (n = 6), respectively. Within 24 h postweaning, piglets from the CON and LY groups were intraperitoneally injected with sterile saline or LPS [25 μg/kg body weight (BW)] and divided into four groups (n = 8): 1) saline + CON (CS), 2) saline + LY (YS), 3) LPS + CON (CLPS), and 4) LPS + LY (YLPS). Data were analyzed in a 2 × 2 factorial arrangement with main effects of maternal diet and immunological challenge. Rectal temperature was measured hourly for 4 h post-injection after which piglets were euthanized. Results showed that LPS increased concentrations of serum tumor necrosis factor (TNF) -α and interlekin (IL) -10 (P< 0.05) and tended to increase IL-8 in the ileal mucosa of piglets (P< 0.10). At 3 h post-injection, YLPS piglets tended to have a lower rectal temperature than CLPS piglets (P< 0.10). YLPS piglets also had decreased protein levels of TNF-α in the ileal mucosa (P< 0.05), with a tendency for greater protein abundance of E-cadherin but decreased mRNA abundance of catalase (P< 0.10) in the jejunal mucosa at 4 h post-injection (P< 0.05). In addition, YLPS piglets had less mRNA abundance of TLR2 and TLR4 in the liver than CLPS piglets (P< 0.05). With shotgun proteomics analysis, we found that milk of LY sows had more abundant proteins associated with immunity, including immunoglobulin and complement protein (Ig-like and C1q domain-containing proteins) on d 0 and d 10. Insulin-like growth factor binding protein (IGFBP) 5 was also more abundant in the d 0 milk of LY sows, whereas prostaglandin synthase was greater in d 10 and d 18 milk of CON sows. Additionally, pathway analysis showed that proteins identified in the milk of CON sows have roles in neutrophil degranulation and IL-12 signaling and production, whereas pathways associated with regulation of complement system, IGF and DHCR24 signaling, were enriched in the milk of LY sows. These results suggest that maternal LY supplementation could protect newly weaned piglets from bacteria endotoxin effect by suppressing inflammatory response, improving expression of tight junction proteins in offspring, and altering immune-associated proteins in sow milk.
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- 2024
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35. 72 Effect of In-feed fecal microbiota transplant on growth performance and gut microbiota dynamics of piglet subjected to post-weaning stress
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Oladele, Paul O, Richert, Brian T, and Johnson, Timothy A
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Weaning is one of the most stressful events for piglets, due to diet change from sow milk to grain-based feed. This diet change causes turnover of the gut microbial which can allow proliferation of pathogens leading to diarrhea. Antibiotics are administered to treat or prevent post-weaning diarrhea (PWD). Increased occurrence of antimicrobial resistance has increased incentives to develop viable antibiotic alternatives. PWD is most often caused by enterotoxigenic Escherichia coli. Similarly, in humans, severe diarrhea can be caused by Clostridium difficilecolonization. Use of fecal microbiota transplants (FMT) has been shown to resolve C. difficile-induced diarrhea in 80 to 90% of human cases which may suggest FMT as a potential therapeutic option for post weaning diarrhea. We previously have shown that in feed fecal microbiota transplant (FMT) improved body weight (BW) gain in newly weaned piglets but it is not clear if this benefit will be replicated in piglets subjected to weaning stress. We hypothesize that FMT (in-feed) will increase colonization efficiency, improve growth performance and reduce diarrhea incidence compared with control in piglets subjected to post weaning stress. The objective of this study was to determine the effect of In-feed FMT of diarrhea index, growth performance and gut microbiota dynamics. Piglets (n = 240) subjected to physiological and transport weaning stress were allotted to 5 treatments: In-feed FMT (FMT1), doubles dose of In-feed FMT1 (FMT2), Oral gavage (FMT3), Antibiotic (positive control), and no supplementation (negative control). The donor material was screened for enterotoxigenic E. coli(F18 and F4). FMT was carried out for 14 d. Diarrhea index was observed for the first 14 d and animal BW, and fecal microbiota was collected by rectal swab on d 0, 3, 5, 7, 14, 21, 28 and 32 for analysis of microbiota composition. DNA was extracted from fecal samples and 16S rRNA gene libraries (V4 region) were prepared for bacterial community analysis. Data were analyzed with one-way ANOVA in R. Only positive control had significantly decrease in diarrhea index and significant increase BW gain on d 14, 21, and 28 (P< 0.05) but there was no effect of FMT (P> 0.05). In conclusion, antibiotics but not FMT was efficient in alleviating the negative performance effect in piglets subjected to post-weaning stress.
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- 2024
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36. A Low-Cost and Simple Demonstration of Freezing Point Depression and Colligative Properties with Common Salts and Ice Cream
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Johnson, Timothy R., Shaffer, Tyler A., Holland, Lisa A., Veltri, Lindsay M., Lucas, John A., Elshamy, Yousef S., and Rutto, Patrick K.
- Abstract
A laboratory activity was developed to teach freezing point depression and colligative properties to introductory-level chemistry students. The laboratory uses food-grade reagents and is delivered in two units that can be taught in a single 2 hour session or two separate sessions. The total cost of the consumables is 1 USD. In the first part of this two-part activity, students perform measurements on the properties of five salt solutions to better know and understand freezing point depression. In the second part of the activity, students apply their knowledge and understanding of freezing point depression to make ice cream. The ice-cream-making experiment is delivered as a group activity to encourage reflection. Centering this experiment on ice cream allows students to connect properties described in chemistry to everyday life. The solutions used in the experiment are reusable and nonhazardous. The experiment can be implemented in a classroom, in a teaching laboratory, or at home.
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- 2022
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37. A Descriptive Analysis of Integrated Plastic Surgery Residency Program Directors in the United States
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Hughes, Alexa J., Samson, Thomas D., Henry, Cathy R., and Johnson, Timothy Shane
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- 2022
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38. Method To Visualize the Intratumor Distribution and Impact of Gemcitabine in Pancreatic Ductal Adenocarcinoma by Multimodal Imaging.
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Strittmatter, Nicole, Richards, Frances M., Race, Alan M., Ling, Stephanie, Sutton, Daniel, Nilsson, Anna, Wallez, Yann, Barnes, Jennifer, Maglennon, Gareth, Gopinathan, Aarthi, Brais, Rebecca, Wong, Edmond, Serra, Maria Paola, Atkinson, James, Smith, Aaron, Wilson, Joanne, Hamm, Gregory, Johnson, Timothy I., Dunlop, Charles R., and Kaistha, Brajesh P.
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- 2022
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39. Parametric Response Mapping of FLAIR MRI Provides an Early Indication of Progression Risk in Glioblastoma.
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Hoff, Benjamin A., Lemasson, Benjamin, Chenevert, Thomas L., Luker, Gary D., Tsien, Christina I., Amouzandeh, Ghoncheh, Johnson, Timothy D., and Ross, Brian D.
- Abstract
Rationale and Objectives: Glioblastoma image evaluation utilizes Magnetic Resonance Imaging contrast-enhanced, T1-weighted, and noncontrast T2-weighted fluid-attenuated inversion recovery (FLAIR) acquisitions. Disease progression assessment relies on changes in tumor diameter, which correlate poorly with survival. To improve treatment monitoring in glioblastoma, we investigated serial voxel-wise comparison of anatomically-aligned FLAIR signal as an early predictor of GBM progression.Materials and Methods: We analyzed longitudinal normalized FLAIR images (rFLAIR) from 52 subjects using voxel-wise Parametric Response Mapping (PRM) to monitor volume fractions of increased (PRMrFLAIR+), decreased (PRMrFLAIR-), or unchanged (PRMrFLAIR0) rFLAIR intensity. We determined response by rFLAIR between pretreatment and 10 weeks posttreatment. Risk of disease progression in a subset of subjects (N = 26) with stable disease or partial response as defined by Response Assessment in Neuro-Oncology (RANO) criteria was assessed by PRMrFLAIR between weeks 10 and 20 and continuously until the PRMrFLAIR+ exceeded a defined threshold. RANO defined criteria were compared with PRM-derived outcomes for tumor progression detection.Results: Patient stratification for progression-free survival (PFS) and overall survival (OS) was achieved at week 10 using RANO criteria (PFS: p <0.0001; OS: p <0.0001), relative change in FLAIR-hyperintense volume (PFS: p = 0.0011; OS: p <0.0001), and PRMrFLAIR+ (PFS: p <0.01; OS: p <0.001). PRMrFLAIR+ also stratified responding patients' progression between weeks 10 and 20 (PFS: p <0.05; OS: p = 0.01) while changes in FLAIR-volume measurements were not predictive. As a continuous evaluation, PRMrFLAIR+ exceeding 10% stratified patients for PFA after 5.6 months (p<0.0001), while RANO criteria did not stratify patients until 15.4 months (p <0.0001).Conclusion: PRMrFLAIR may provide an early biomarker of disease progression in glioblastoma. [ABSTRACT FROM AUTHOR]- Published
- 2021
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40. Movement Ecology of a Potamodromous Top Predator in a Large Lake: Synchrony and Coexistence of Distinct Migratory Patterns.
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Ivanova, Silviya V., Johnson, Timothy B., and Fisk, Aaron T.
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Migrations are a critical component of the life histories of many highly mobile animals. Potamodromous migrations that occur within large lakes are poorly understood for most species. This lack of understanding hampers restoration efforts and adaptive management because the movement of species and underlying patterns and mechanisms help scientists identify important habitats and quantify species' roles in the ecosystem. This study quantified the spatiotemporal movements and migratory patterns of Lake Trout Salvelinus namaycush, an iteroparous, potamodromous predator, in eastern Lake Ontario. The lake is highly managed and supports a diverse fish community of native and nonnative species. The movements of 41 Lake Trout were quantified over 2.4 years (December 2016 to April 2019) across a large array of 196 acoustic receivers in eastern Lake Ontario. An analysis of individual movements revealed a potential annual convergence occurring in the fall at a location other than the spawning grounds, followed by a synchronized migration to spawning areas. Consistent with divergent migrations, return migration was asynchronous among individuals but consistent in timing interannually, stretching over a longer period than did prespawning movements and across multiple routes. The data suggest the existence of three groups (i.e., contingents) of Lake Trout with distinct migratory behaviors. This study provides important information on the migratory patterns and routes and a potential staging area for a potamodromous top predator population in a large lake. This information can help managers understand the potential success and implications of employing different rehabilitation strategies, such as diversifying populations of Lake Trout through selective strain stocking in large deep lakes to aid reestablishment across habitats. In addition, our results have the potential to improve community dynamics modeling, understanding of nutrient cycling, and overall ecosystem function of large lakes. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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41. Formal Reporting of Identity-Based Harassment at an Academic Medical Center: Incidence, Barriers, and Institutional Responses
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Vargas, Emily A., Cortina, Lilia M., Settles, Isis H., Brassel, Sheila T., Perumalswami, Chithra R., Johnson, Timothy R.B., and Jagsi, Reshma
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- 2022
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42. A hybrid FTIR/QCL sensing system for gas-phase kinetics using a long-path gas cell
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Harding, Kevin G., Zhang, Song, Hyun, Jae-Sang, Li, Beiwen, Dunlap, Megan K., Hughey, Kendall D., Tonkyn, Russell G., Harper, Warren W., Myers, Tanya L., and Johnson, Timothy J.
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- 2022
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43. A Data-Driven Approach to Predicting 5-Aminolevulinic Acid–Induced Fluorescence and World Health Organization Grade in Newly Diagnosed Diffuse Gliomas
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Müther, Michael, Jaber, Mohammed, Johnson, Timothy D., Orringer, Daniel A., and Stummer, Walter
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- 2022
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44. On-farm colorimetric detection of Pasteurella multocida, Mannheimia haemolytica, and Histophilus somni in crude bovine nasal samples.
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Pascual-Garrigos, Ana, Maruthamuthu, Murali Kannan, Ault, Aaron, Davidson, Josiah Levi, Rudakov, Grigorii, Pillai, Deepti, Koziol, Jennifer, Schoonmaker, Jon P., Johnson, Timothy, and Verma, Mohit S.
- Abstract
This work modifies a loop-mediated isothermal amplification (LAMP) assay to detect the bovine respiratory disease (BRD) bacterial pathogens Pasteurella multocida, Mannheimia haemolytica, and Histophilus somni in a colorimetric format on a farm. BRD causes a significant health and economic burden worldwide that partially stems from the challenges involved in determining the pathogens causing the disease. Methods such as polymerase chain reaction (PCR) have the potential to identify the causative pathogens but require lab equipment and extensive sample processing making the process lengthy and expensive. To combat this limitation, LAMP allows accurate pathogen detection in unprocessed samples by the naked eye allowing for potentially faster and more precise diagnostics on the farm. The assay developed here offers 66.7–100% analytical sensitivity, and 100% analytical specificity (using contrived samples) while providing 60–100% concordance with PCR results when tested on five steers in a feedlot. The use of a consumer-grade water bath enabled on-farm execution by collecting a nasal swab from cattle and provided a colorimetric result within 60 min. Such an assay holds the potential to provide rapid pen-side diagnostics to cattle producers and veterinarians. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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45. 760 TRANSGLUTAMINASE 2 IS ELEVATED IN CROHN'S DISEASE ASSOCIATED STRICTURES AND EXERTS PROFIBROTIC ACTIVITIES IN MYOFIBROBLASTS AND EXPERIMENTAL INTESTINAL FIBROSIS.
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Chandra, Jyotsna, Czarnecki, Doug, Mukherjee, Pranab K., Mao, Ren, Bergin, Marianne, Huang, Linghong, Johnson, Timothy S., West, Gail A., Kessler, Sean, Fiocchi, Claudio, De La Motte, Carol, and Rieder, Florian
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- 2024
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46. Method To Visualize the Intratumor Distribution and Impact of Gemcitabine in Pancreatic Ductal Adenocarcinoma by Multimodal Imaging
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Strittmatter, Nicole, Richards, Frances M., Race, Alan M., Ling, Stephanie, Sutton, Daniel, Nilsson, Anna, Wallez, Yann, Barnes, Jennifer, Maglennon, Gareth, Gopinathan, Aarthi, Brais, Rebecca, Wong, Edmond, Serra, Maria Paola, Atkinson, James, Smith, Aaron, Wilson, Joanne, Hamm, Gregory, Johnson, Timothy I., Dunlop, Charles R., Kaistha, Brajesh P., Bunch, Josephine, Sansom, Owen J., Takats, Zoltan, Andrén, Per E., Lau, Alan, Barry, Simon T., Goodwin, Richard J. A., and Jodrell, Duncan I.
- Abstract
Gemcitabine (dFdC) is a common treatment for pancreatic cancer; however, it is thought that treatment may fail because tumor stroma prevents drug distribution to tumor cells. Gemcitabine is a pro-drug with active metabolites generated intracellularly; therefore, visualizing the distribution of parent drug as well as its metabolites is important. A multimodal imaging approach was developed using spatially coregistered mass spectrometry imaging (MSI), imaging mass cytometry (IMC), multiplex immunofluorescence microscopy (mIF), and hematoxylin and eosin (H&E) staining to assess the local distribution and metabolism of gemcitabine in tumors from a genetically engineered mouse model of pancreatic cancer (KPC) allowing for comparisons between effects in the tumor tissue and its microenvironment. Mass spectrometry imaging (MSI) enabled the visualization of the distribution of gemcitabine (100 mg/kg), its phosphorylated metabolites dFdCMP, dFdCDP and dFdCTP, and the inactive metabolite dFdU. Distribution was compared to small-molecule ATR inhibitor AZD6738 (25 mg/kg), which was codosed. Gemcitabine metabolites showed heterogeneous distribution within the tumor, which was different from the parent compound. The highest abundance of dFdCMP, dFdCDP, and dFdCTP correlated with distribution of endogenous AMP, ADP, and ATP in viable tumor cell regions, showing that gemcitabine active metabolites are reaching the tumor cell compartment, while AZD6738 was located to nonviable tumor regions. The method revealed that the generation of active, phosphorylated dFdC metabolites as well as treatment-induced DNA damage primarily correlated with sites of high proliferation in KPC PDAC tumor tissue, rather than sites of high parent drug abundance.
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- 2022
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47. Learning to Speak Up: Acclimation Effects and Supreme Court Oral Argument
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Houston, Rachael, Li, Siyu, and Johnson, Timothy R.
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AbstractA long line of literature examines acclimation effects for newly confirmed U.S. Supreme Court justices. However, most of these analyses focus only on how new justices vote or write opinions. Here, we examine how they act during the one public aspect of the Court’s decision-making process—its oral arguments on the merits. In so doing, we seek to determine whether new justices speak, and interrupt their colleagues, less often than do their more senior colleagues. Using data on justices’ speaking turns and interruptions during all orally argued cases from the 1955 to 2018 terms, we find an acclimation effect exists whereby new justices are significantly less inclined to speak and interrupt their more senior colleagues. Our models also suggest gender and judicial ideology influence the extent to which new justices exhibit such effects during oral argument proceedings.
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- 2021
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48. Movement Ecology of a Potamodromous Top Predator in a Large Lake: Synchrony and Coexistence of Distinct Migratory Patterns
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Ivanova, Silviya V., Johnson, Timothy B., and Fisk, Aaron T.
- Abstract
Migrations are a critical component of the life histories of many highly mobile animals. Potamodromous migrations that occur within large lakes are poorly understood for most species. This lack of understanding hampers restoration efforts and adaptive management because the movement of species and underlying patterns and mechanisms help scientists identify important habitats and quantify species’ roles in the ecosystem. This study quantified the spatiotemporal movements and migratory patterns of Lake Trout Salvelinus namaycush, an iteroparous, potamodromous predator, in eastern Lake Ontario. The lake is highly managed and supports a diverse fish community of native and nonnative species. The movements of 41 Lake Trout were quantified over 2.4 years (December 2016 to April 2019) across a large array of 196 acoustic receivers in eastern Lake Ontario. An analysis of individual movements revealed a potential annual convergence occurring in the fall at a location other than the spawning grounds, followed by a synchronized migration to spawning areas. Consistent with divergent migrations, return migration was asynchronous among individuals but consistent in timing interannually, stretching over a longer period than did prespawning movements and across multiple routes. The data suggest the existence of three groups (i.e., contingents) of Lake Trout with distinct migratory behaviors. This study provides important information on the migratory patterns and routes and a potential staging area for a potamodromous top predator population in a large lake. This information can help managers understand the potential success and implications of employing different rehabilitation strategies, such as diversifying populations of Lake Trout through selective strain stocking in large deep lakes to aid reestablishment across habitats. In addition, our results have the potential to improve community dynamics modeling, understanding of nutrient cycling, and overall ecosystem function of large lakes.
- Published
- 2021
- Full Text
- View/download PDF
49. Safety Concerns for MOF SynthesesUnderstanding the Behavior of DMF Mixtures at Elevated Temperature and Pressure.
- Author
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Johnson, Timothy, Fejzic, Mirza, Tee, Daren, and Bennett, Stephen
- Published
- 2021
- Full Text
- View/download PDF
50. Learning to Speak Up: Acclimation Effects and Supreme Court Oral Argument.
- Author
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Houston, Rachael, Li, Siyu, and Johnson, Timothy R.
- Subjects
FORENSIC orations ,ATTITUDES of U.S. Supreme Court justices - Abstract
A long line of literature examines acclimation effects for newly confirmed U.S. Supreme Court justices. However, most of these analyses focus only on how new justices vote or write opinions. Here, we examine how they act during the one public aspect of the Court's decision-making process—its oral arguments on the merits. In so doing, we seek to determine whether new justices speak, and interrupt their colleagues, less often than do their more senior colleagues. Using data on justices' speaking turns and interruptions during all orally argued cases from the 1955 to 2018 terms, we find an acclimation effect exists whereby new justices are significantly less inclined to speak and interrupt their more senior colleagues. Our models also suggest gender and judicial ideology influence the extent to which new justices exhibit such effects during oral argument proceedings. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
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