61 results on '"Livinski A"'
Search Results
2. Implementation Science for the Prevention and Treatment of HIV among Adolescents and Young Adults in Sub-Saharan Africa: A Scoping Review
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Susan Vorkoper, Kadija M. Tahlil, Nadia A. Sam-Agudu, Joseph D. Tucker, Alicia A. Livinski, Frances Fernando, and Rachel Sturke
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Infectious Diseases ,Social Psychology ,Public Health, Environmental and Occupational Health - Abstract
Despite many evidence-based adolescent and young adult (AYA) HIV interventions, few are implemented at scale in sub-Saharan Africa (SSA). A growing implementation science literature provides important context for scaling up AYA HIV interventions in this high HIV-burden region. This scoping review examined the use of implementation research in AYA HIV studies conducted in SSA. We searched five databases and included articles which focused on AYA (10–24 years old), addressed HIV prevention or treatment, were conducted exclusively in SSA countries, and included an implementation science outcome. We included 44 articles in 13 SSA countries. Most were in East (52.3%) and South Africa (27.3%), and half focused exclusively on HIV prevention components of the care continuum. Acceptability and feasibility were the most cited implementation science outcomes. Only four articles used an established implementation science framework. The findings informed our recommendations to guide the design, implementation, and dissemination of further studies and health policymaking.
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- 2022
3. A scoping review of methods used in musculoskeletal soft tissue and nerve shear wave elastography studies
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Kevin J, Cipriano, Jordan, Wickstrom, Michael, Glicksman, Lauren, Hirth, Michael, Farrell, Alicia A, Livinski, Sogol Attaripour, Esfahani, Robert J, Maldonado, Jared, Astrow, William A, Berrigan, Antonia M H, Piergies, Lisa D, Hobson-Webb, and Katharine E, Alter
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Tendons ,Neurology ,Electromyography ,Physiology (medical) ,Elasticity Imaging Techniques ,Humans ,Neurology (clinical) ,Muscle, Skeletal ,Sensory Systems ,Ultrasonography - Abstract
This scoping review of shear wave elastography (SWE) articles in musculoskeletal soft tissue and nerve research demonstrates methodological heterogeneity resulting from a lack of standardized data collection and reporting requirements. Seven literature databases were searched for original articles published in English from 2004-2020 that examine human skeletal muscles, tendons, and nerves in vivo. Although 5,868 records were initially identified, only 375 reports met inclusion criteria. Of the 375 articles, 260 examined 89 unique muscles, 94 examined 14 unique tendons, and 43 examined 8 unique nerves. Cohorts were often small (n = 11-20) and young (mean = 20-29 years), and participants were typically tested in the prone position. Regarding equipment, a variety of ultrasound systems (n = 11), ultrasound models (n = 18), and transducers (n = 19) were identified. Only 11% of articles contained information on the use of electromyography to confirm absence of muscle activity, and only 8% reported measurement depth. Since musculoskeletal soft tissue and nerve stiffness can vary significantly based on data collection methods, it is essential to standardize SWE collection and reporting procedures. This will allow SWE to serve as a valid and reproducible tool for assessing tissue pathology, disease progression, and response to intervention within a variety of musculoskeletal and nerve-related disorders.
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- 2022
4. COVID-19 exposed pre-existing roadblocks for cancer control in Africa: strategies, lessons and recommendations from the 2019–2020 Africa Cancer Research and Control ECHO
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Annet Nakaganda, Nwamaka Lasebikan, Elise M Garton, Benda Kithaka, Eunice Garanganga, Alicia A Livinski, and Mishka K Cira
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Cancer Research ,Oncology - Published
- 2023
5. Ionising radiation and cardiovascular disease : systematic review and meta-analysis
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Mark P Little, Tamara V Azizova, David B Richardson, Soile Tapio, Marie-Odile Bernier, Michaela Kreuzer, Francis A Cucinotta, Dimitry Bazyka, Vadim Chumak, Victor K Ivanov, Lene H S Veiga, Alicia Livinski, Kossi Abalo, Lydia B Zablotska, Andrew J Einstein, and Nobuyuki Hamada
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Arbetsmedicin och miljömedicin ,General Medicine ,Occupational Health and Environmental Health - Abstract
Objective To systematically review and perform a meta-analysis of radiation associated risks of cardiovascular disease in all groups exposed to radiation with individual radiation dose estimates. Design Systematic review and meta-analysis. Main outcome measures Excess relative risk per unit dose (Gy), estimated by restricted maximum likelihood methods. Data sources PubMed and Medline, Embase, Scopus, Web of Science Core collection databases. Eligibility criteria for selecting studies Databases were searched on 6 October 2022, with no limits on date of publication or language. Animal studies and studies without an abstract were excluded. Results The meta-analysis yielded 93 relevant studies. Relative risk per Gy increased for all cardiovascular disease (excess relative risk per Gy of 0.11 (95% confidence interval 0.08 to 0.14)) and for the four major subtypes of cardiovascular disease (ischaemic heart disease, other heart disease, cerebrovascular disease, all other cardiovascular disease). However, interstudy heterogeneity was noted (P Conclusions Results provide evidence supporting a causal association between radiation exposure and cardiovascular disease at high dose, and to a lesser extent at low dose, with some indications of differences in risk between acute and chronic exposures, which require further investigation. The observed heterogeneity complicates a causal interpretation of these findings, although this heterogeneity is much reduced if only higher quality studies or those at moderate doses or low dose rates are considered. Studies are needed to assess in more detail modifications of radiation effect by lifestyle and medical risk factors. Systematic review registration PROSPERO CRD42020202036
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- 2023
6. The effect of music on response to ketamine: A scoping review protocol
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Price, Rebecca B., Jamalabadi, Hamidreza, Neely, Lucinda, Yavi, Mani, Shahaboddin Dabaghi Varnosfaderani, Livinski, Alicia, Kheirkhah, Mina, Zarate, Carlos A., Johnson, Sara C., Walter, Martin, and Nugent, Allison C
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Neurology ,ketamine ,Mental and Social Health ,Other Mental and Social Health ,Medicine and Health Sciences ,Medical Specialties ,music ,protocol ,scoping review - Abstract
Few studies have investigated the co-administration of music and ketamine, which could lead to different therapeutic outcomes than administration of ketamine alone. This scoping review will describe the existing literature on the joint use of ketamine and music in humans and seeks to determine how ketamine and music may interact. Five databases (PubMed, Embase, PsycNet, Scopus, Web of Science: Core) and Google Scholar will be searched; articles of interest will be limited to the English language but not to any publication year. Two reviewers will independently screen each record using Covidence, a screening and data extraction tool, and resolve disagreements via consensus. All studies in English that address the effects of co-administration of ketamine (any dose or administration route) and music in healthy volunteers or patients (any age group for any treatment) will be included. Articles about recreational use of ketamine will be excluded. Two reviewers will extract the identified data items using Covidence. This scoping review will be the first on the topic of music and ketamine and will help researchers who wish to design future studies investigating ketamine and music.
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- 2023
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7. How to write a scoping review protocol: Guidance and template
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Wickstrom, Jordan, Butera, Gisela, Lely, Justine, Livinski, Alicia A., Morris, Hailey C., Camarillo, Nathan D., and Sasson, Noa
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Medicine and Health Sciences ,Life Sciences ,evidence synthesis ,protocol ,scoping review ,Other Medicine and Health Sciences - Abstract
A scoping review provides a comprehensive overview of a particular topic by synthesizing the breadth of evidence currently available. It has become an increasingly common approach to summarize the literature since its inception in 2005, and detailed approaches have since been developed to provide methodological and reporting guidance. Scoping reviews are intended to provide readers with key concepts and definitions, important insights regarding the topic of interest, knowledge gaps in the field, and a summary of how research has been conducted. They may serve as a precursor to systematic reviews conducted on larger, more homogeneous bodies of evidence, which often include more specific research questions, methodological appraisals, risk of bias assessments, and meta-analyses. This Scoping Review Protocol Guidance is intended to serve as an educational tool for those developing or reviewing scoping review protocols including novice, intermediate, and experienced researchers and clinicians. This document provides information for each core protocol component (see color-coded headings) consisting of overarching goals, core requirements, helpful tips, and published protocol examples. Please note these examples may not include all recommendations provided herein. When writing your protocol, this guidance is intended to be used in tandem with the Scoping Review Protocol Template, which includes headings and subheadings to insert relevant protocol information. Please refer to our bibliography for the list of resources used to create these documents.
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- 2023
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8. Team-Based Care for Cancer Survivors With Comorbidities: A Systematic Review
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Michelle Doose, Dana Verhoeven, Janeth I. Sanchez, Alicia A. Livinski, Michelle Mollica, Veronica Chollette, and Sallie J. Weaver
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Adult ,Cancer Survivors ,Health Policy ,Communication ,Neoplasms ,Public Health, Environmental and Occupational Health ,Humans ,Comorbidity ,Delivery of Health Care ,Article ,Quality of Health Care - Abstract
Coordination of quality care for the growing population of cancer survivors with comorbidities remains poorly understood, especially among health disparity populations who are more likely to have comorbidities at the time of cancer diagnosis. This systematic review synthesized the literature from 2000 to 2022 on team-based care for cancer survivors with comorbidities and assessed team-based care conceptualization, teamwork processes, and outcomes. Six databases were searched for original articles on adults with cancer and comorbidity, which defined care team composition and comparison group, and assessed clinical or teamwork processes or outcomes. We identified 1,821 articles of which 13 met the inclusion criteria. Most studies occurred during active cancer treatment and nine focused on depression management. Four studies focused on Hispanic or Black cancer survivors and one recruited rural residents. The conceptualization of team-based care varied across articles. Teamwork processes were not explicitly measured, but teamwork concepts such as communication and mental models were mentioned. Despite team-based care being a cornerstone of quality cancer care, studies that simultaneously assessed care delivery and outcomes for cancer and comorbidities were largely absent. Improving care coordination will be key to addressing disparities and promoting health equity for cancer survivors with comorbidities.
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- 2023
9. The Reporting of Social Determinants of Health in Pediatric Dermatology Clinical Trials: A Systematic Review Protocol
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Castelo-Soccio, Leslie, Candrice Heath, Livinski, Alicia, and Nwankwo, Christy
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dermatology ,Skin and Connective Tissue Diseases ,clinical trials ,pediatrics ,social determinants of health ,Medical Specialties ,Medicine and Health Sciences ,Diseases ,Other Medicine and Health Sciences ,Translational Medical Research - Abstract
Rationale: By 2044, 50% of the United States will be of minority status [1]. Given the changing US population, it is important to reconsider traditional ways of understanding diversity. Diversity in research allows for the examination of drivers of health disparities as evidenced by prior research finding differences in health outcomes dependent on patient race [2]. However, most scholars now agree that markers such as race and ethnicity are imperfect measures of variation as there is more genetic heterogeneity between people of the same race than those of different races [3]. Due to the known impact of social determinants on health disparities, these may serve as better tools to use in research analysis for understanding diversity and differences in health outcomes [4]. In this systematic review, we will discuss the current practice for using race in pediatric clinical trial research and provide a review of the use of social determinants of health in pediatric clinical trial research. Objective: The objective of this systematic review is to assess if there is reporting of social determinants of health in pediatric dermatology clinical trial research (specifically income, location, education, healthcare, and social support) and the conditions and setting this reporting occurs.
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- 2023
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10. Global Health Reciprocal Innovation: A Scoping Review Protocol
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Jepchirchir Kiplagat, Kupfer, Linda, Knowlton, Arina, Livinski, Alicia, and Ishimwe, Sage M.C.
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International Public Health ,reciprocal innovation ,public health ,Medicine and Health Sciences ,global health ,reverse innovation - Abstract
This scoping review seeks to highlight how health innovations researched, developed, and implemented in low- and middle-income countries (LMICs) can be adapted and adopted to address similar challenges in high-income country (HIC) settings utilizing various scientific methods. By understanding the range of research and programs already conducted under reciprocal innovation , we hope by conducting this review to identify knowledge gaps in the evidence base and determine which methods work best to encourage health researchers and funders to conduct and support reciprocal innovations in the future.
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- 2023
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11. A scoping review on sex and gender differences in sickle cell trait and adverse health outcomes
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Phillips, Angela, Livinski, Alicia, Bevans, Margaret, Segovia, Laura, Shet, Arun, and Wilson, Candy
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Medicine and Health Sciences - Abstract
In SCT individuals (population) with adverse health outcomes (context), what is known about sex and gender differences (concepts)?
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- 2023
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12. Identifying Approaches to Process Actigraphy Data: A Scoping Review Protocol
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Gonsalves, Stephen, Steele, Michael, Fuss, Timothy, Ross, Alexander, Kwiat, Catherine, Nguyen, Christopher, Livinski, Alicia, and Saligan, Leorey
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Medicine and Health Sciences ,accelerometry ,physical activity ,Sports Sciences ,Nursing ,human physical activity ,FOS: Health sciences ,data cleaning ,actigraphy ,data preparation - Abstract
Background: Wearable actigraphy monitors have seen rapid growth in both clinical and physical activity (PA) research. For research studies that utilize human participants, these portable devices provide a means to objectively quantify symptom burden and therapy effectiveness. The highly detailed data gathered from actigraphy devices allows researchers to identify even the subtlest changes in rest, sleep, and activity patterns that occur with other therapeutics. Compared to participant self-report, the data collection automation by a passive activity monitor improves the quality and reliability of the data. However, there is no consensus in how the data from these monitors are processed, different actigraphy brands and models used, and inconsistent reporting making comparisons difficult. There are several actigraphy data processing methods, but no consensus on definitions for PA values or cleaning guidelines to facilitate comparison across studies. PA research could be advanced with globally acceptable standardization in the processing of PA data. We will conduct a scoping review to identify common cleaning and pre-processing techniques of raw PA counts collected from commercially available actigraphy devices. Methods: We will use the Joanna Briggs Institute’s methodology to guide the conduct of this review and the PRISMA extension for scoping reviews checklist for reporting. A librarian will search PubMed (NLM), Scopus (Elsevier), and Web of Science: Core Collection (Clarivate Analytics) using keywords and controlled vocabulary. The reference lists of included articles and consultation with experts will be used to identify additional records. Two authors will first screen the titles and abstracts and then full-text using Covidence. Studies describing the cleaning or preparation of PA data collected from actigraphy monitors for human movement will be included. Two authors will independently extract from each included article the type of PA analyzed, criteria and descriptions used to categorize PA, accelerometry data collection methods, actigraphy cleaning method, actigraphy algorithms, and PA variables. Results will be presented through a descriptive numerical summary of studies, PRISMA flow diagram, and tables showing the cleaning methods and algorithms used and PA variables. Discussion: The findings of this scoping review will identify common actigraphy data cleaning procedures to fill the existing gap in PA research.
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- 2022
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13. The role of race in self-reported psychoneurophysical symptom reporting in patients with chronic disease: a protocol for a scoping review
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Rio, Carielle, Blumborst, Cathy, Kwiat, Catherine, Nguyen, Christopher, Livinski, Alicia, and Saligan, Leorey
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diabetes ,cardiovascular disease ,racial disparities ,Medicine and Health Sciences ,psychoneurophysical symptoms ,cancer ,self-reporting ,Nursing ,scoping review ,FOS: Health sciences ,patient reported outcomes ,respiratory disease - Abstract
This scoping review will explore the effects of race in the self-reporting of psychoneurophysical (PNP) symptoms in adult patients with four chronic diseases (cardiovascular diseases, respiratory diseases, cancers, and diabetes. The PNP symptoms of interest include depressive symptoms, fatigue, anxiety, pain, cognitive impairment, sleep impairment, mood impairment, irritability, and shortness of breath.
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- 2022
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14. The State of Preclinical Modeling for Early Phase Cancer Trials Using Molecularly Targeted Agents with Radiation
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Julie A. Hong, Bhadrasian Vikram, Jeffrey Buchsbaum, Jacek Capala, Alicia Livinski, Beverly Teicher, Pataje Prasanna, Mansoor M. Ahmed, Ceferino Obcemea, C. Norman Coleman, and Michael Graham Espey
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Radiation ,Biophysics ,Radiology, Nuclear Medicine and imaging ,Article - Abstract
Preclinical studies inform and guide the development of novel treatment combination strategies that bridge the laboratory with the clinic. We aimed to evaluate approaches cancer researchers used to justify advancing new combinations of molecularly targeted agents and radiation treatment into early-phase human clinical trials. Unsolicited early phase clinical trial proposals submitted to the National Cancer Institute's Cancer Therapy Evaluation Program between January 2016 and July 2020 were curated to quantify key characteristics and proportion of preclinical data provided by trialists seeking to conduct molecularly targeted agent-radiation combination studies in cancer patients. These data elucidate the current landscape for how the rationale for a molecularly targeted agent-radiation combination therapy is supported by preclinical research and illustrate unique challenges faced in translation at the intersection of precision medicine and radiation oncology.
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- 2022
15. A systematic review of the biological mediators of fat taste and smell
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Rosario B. Jaime-Lara, Brianna E. Brooks, Carlotta Vizioli, Mari Chiles, Nafisa Nawal, Rodrigo S. E. Ortiz-Figueroa, Alicia A. Livinski, Khushbu Agarwal, Claudia Colina-Prisco, Natalia Iannarino, Aliya Hilmi, Hugo A. Tejeda, and Paule V. Joseph
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Smell ,Physiology ,Physiology (medical) ,Taste ,Animals ,Humans ,General Medicine ,Feeding Behavior ,Obesity ,Taste Buds ,Molecular Biology - Abstract
Taste and smell play a key role in our ability to perceive foods. Overconsumption of highly palatable energy-dense foods can lead to increased caloric intake and obesity. Thus there is growing interest in the study of the biological mediators of fat taste and associated olfaction as potential targets for pharmacologic and nutritional interventions in the context of obesity and health. The number of studies examining mechanisms underlying fat taste and smell has grown rapidly in the last 5 years. Therefore, the purpose of this systematic review is to summarize emerging evidence examining the biological mechanisms of fat taste and smell. A literature search was conducted of studies published in English between 2014 and 2021 in adult humans and animal models. Database searches were conducted using PubMed, EMBASE, Scopus, and Web of Science for key terms including fat/lipid, taste, and olfaction. Initially, 4,062 articles were identified through database searches, and a total of 84 relevant articles met inclusion and exclusion criteria and are included in this review. Existing literature suggests that there are several proteins integral to fat chemosensation, including cluster of differentiation 36 (CD36) and G protein-coupled receptor 120 (GPR120). This systematic review will discuss these proteins and the signal transduction pathways involved in fat detection. We also review neural circuits, key brain regions, ingestive cues, postingestive signals, and genetic polymorphism that play a role in fat perception and consumption. Finally, we discuss the role of fat taste and smell in the context of eating behavior and obesity.
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- 2022
16. Cancer incidence and surveillance strategies in individuals with RASopathies
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Gina Ney, Andrea Gross, Alicia Livinski, Christian P. Kratz, and Douglas R. Stewart
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Genetics ,Genetics (clinical) - Abstract
RASopathies are a set of clinical syndromes that have molecular and clinical overlap. Genetically, these syndromes are defined by germline pathogenic variants in RAS/MAPK pathway genes resulting in activation of this pathway. Clinically, their common molecular signature leads to comparable phenotypes, including cardiac anomalies, neurologic disorders and notably, elevated cancer risk. Cancer risk in individuals with RASopathies has been estimated from retrospective reviews and cohort studies. For example, in Costello syndrome, cancer incidence is significantly elevated over the general population, largely due to solid tumors. In some forms of Noonan syndrome, cancer risk is also elevated over the general population and is enriched for hematologic malignancies. Thus, cancer surveillance guidelines have been developed to monitor for the occurrence of such cancers in individuals with some RASopathies. These include abdominal ultrasound and urinalyses for individuals with Costello syndrome, while complete blood counts and splenic examination are recommended in Noonan syndrome. Improved cancer risk estimates and refinement of surveillance recommendations will improve the care of individuals with RASopathies.
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- 2022
17. The developmental origins of suicide mortality: a systematic review of longitudinal studies
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Pablo Vidal-Ribas, Theemeshni Govender, Jing Yu, Alicia A. Livinski, Denise L. Haynie, and Stephen E. Gilman
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Psychiatry and Mental health ,Pediatrics, Perinatology and Child Health ,Developmental and Educational Psychology ,General Medicine - Published
- 2022
18. Sensory cue reactivity: Sensitization in alcohol use disorder and obesity
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Nora D. Volkow, Alicia A. Livinski, Khushbu Agarwal, Paule V. Joseph, Peter Manza, and Lorenzo Leggio
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medicine.diagnostic_test ,Mechanism (biology) ,Cognitive Neuroscience ,Brain ,Sensory system ,Alcohol use disorder ,Electroencephalography ,medicine.disease ,Magnetic Resonance Imaging ,Neuromodulation (medicine) ,Alcoholism ,Behavioral Neuroscience ,Neuropsychology and Physiological Psychology ,Neuroimaging ,Biological neural network ,medicine ,Humans ,Obesity ,Cues ,Psychology ,Functional magnetic resonance imaging ,Neuroscience - Abstract
Neuroimaging techniques to measure the function of the human brain such as electroencephalography (EEG), positron emission tomography (PET), and functional magnetic resonance imaging (fMRI), are powerful tools for understanding the underlying neural circuitry associated with alcohol use disorder (AUD) and obesity. The sensory (visual, taste and smell) paradigms used in neuroimaging studies represent an ideal platform to investigate the connection between the different neural circuits subserving the reward/executive control systems in these disorders, which may offer a translational mechanism for novel intervention predictions. Thus, the current review provides an integrated summary of the recent neuroimaging studies that have applied cue-reactivity paradigms and neuromodulation strategies to explore underlying alterations in neural circuitry as well in treatment strategies in AUD and obesity. Finally, we discuss literature on mechanisms associated with increased alcohol sensitivity post-bariatric surgery (BS) which offers guidance for future research to use sensory percepts in elucidating the relation of reward signaling in AUD development post-BS.
- Published
- 2021
19. Implementation Science for the Prevention and Treatment of HIV among Adolescents and Young Adults in Sub-Saharan Africa: A Scoping Review
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Susan, Vorkoper, Kadija M, Tahlil, Nadia A, Sam-Agudu, Joseph D, Tucker, Alicia A, Livinski, Frances, Fernando, and Rachel, Sturke
- Abstract
Despite many evidence-based adolescent and young adult (AYA) HIV interventions, few are implemented at scale in sub-Saharan Africa (SSA). A growing implementation science literature provides important context for scaling up AYA HIV interventions in this high HIV-burden region. This scoping review examined the use of implementation research in AYA HIV studies conducted in SSA. We searched five databases and included articles which focused on AYA (10-24 years old), addressed HIV prevention or treatment, were conducted exclusively in SSA countries, and included an implementation science outcome. We included 44 articles in 13 SSA countries. Most were in East (52.3%) and South Africa (27.3%), and half focused exclusively on HIV prevention components of the care continuum. Acceptability and feasibility were the most cited implementation science outcomes. Only four articles used an established implementation science framework. The findings informed our recommendations to guide the design, implementation, and dissemination of further studies and health policymaking.
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- 2022
20. Bibliometric Analysis of Research Studies Based on Federally Funded Children's Health Surveys
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Stephen J. Blumberg, Candace Norton, Sarika Rane Parasuraman, Michael D. Kogan, Alicia A. Livinski, Reem M. Ghandour, and Lydie A. Lebrun-Harris
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Government ,business.industry ,Child Health ,Library science ,Scientific literature ,Bibliometrics ,Research Personnel ,Article ,Occupational safety and health ,03 medical and health sciences ,0302 clinical medicine ,Publishing ,030225 pediatrics ,Pediatrics, Perinatology and Child Health ,Health care ,Humans ,030212 general & internal medicine ,Child ,business ,Citation ,Delivery of Health Care ,News media - Abstract
Objective Bibliometric analyses are commonly used to measure the productivity of researchers or institutions but rarely used to assess the scientific contribution of national surveys/datasets. We applied bibliometric methods to quantify the contributions of the National Survey of Children's Health (NSCH) and the National Survey of Children with Special Health Care Needs (NS-CSHCN) to the body of pediatric health-related research. We also examined dissemination to nonresearch audiences by analyzing media coverage of statistics and research produced from the surveys. Methods We conducted a search of the Web of Science database to identify peer-reviewed articles related to the NSCH and NS-CSHCN published between 2002 and 2019. We summarized information about citation counts, publishing journals, key research areas, and institutions using the surveys. We used the Lexis Advance database Nexis to assess media coverage. Results The publication set included 716 NSCH/NS-CSHCN journal articles published between 2002 and June 2019. These publications have in turn been cited 22,449 times, including in 1614 review articles. Over 180 journals have published NSCH/NS-CSHCN articles, and the most commonly covered research areas are in pediatrics; public, environmental and occupational health; psychology; and health care sciences and services. Over 500 institutions have used NSCH/NS-CSHCN data to publish journal articles, and over 950 news media articles have cited statistics or research produced by the surveys. Conclusions NSCH/NS-CSHCN data are widely used by government, academic, and media institutions. Bibliometric methods provide a systematic approach to quantify and describe the contributions to the scientific literature made possible with these data.
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- 2021
21. The impact of caregiving for children with chronic conditions on the HPA axis: A scoping review
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Lindsey Mountcastle, Melissa Zajdel, Taylor Robinson, Krystyna R. Keller, Shani Gelles, Alicia A. Livinski, Bijal Kikani, Dawn E. Lea, and Laura M. Koehly
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Endocrine and Autonomic Systems - Published
- 2023
22. The developmental origins of suicide mortality: a systematic review of longitudinal studies
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Pablo, Vidal-Ribas, Theemeshni, Govender, Jing, Yu, Alicia A, Livinski, Denise L, Haynie, and Stephen E, Gilman
- Abstract
Suicide prevention efforts generally target acute precipitants of suicide, though accumulating evidence suggests that vulnerability to suicide is partly established early in life before acute precipitants can be identified. The aim of this systematic review was to synthesize evidence on early life vulnerability to suicide beginning in the prenatal period and extending through age 12. We searched PubMed, Embase, PsycNet, Web of Science, Scopus, Social Services Abstracts, and Sociological Abstracts for prospective studies published through January 2021 that investigated early life risk factors for suicide mortality. The search yielded 13,237 studies; 54 of these studies met our inclusion criteria. Evidence consistently supported the link between sociodemographic (e.g., young maternal age at birth, low parental education, and higher birth order), obstetric (e.g., low birth weight), parental (e.g., exposure to parental death by external causes), and child developmental factors (e.g., exposure to emotional adversity) and higher risk of suicide death. Among studies that also examined suicide attempt, there was a similar profile of risk factors. We discuss a range of potential pathways implicated in these associations and suggest that additional research be conducted to better understand how early life factors could interact with acute precipitants and increase vulnerability to suicide.
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- 2022
23. The influence of telehealth-based cancer rehabilitation interventions on disability: a systematic review
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Rachelle Brick, Lynne Padgett, Jennifer Jones, Kelley Covington Wood, Mackenzi Pergolotti, Timothy F. Marshall, Grace Campbell, Rachel Eilers, Sareh Keshavarzi, Ann Marie Flores, Julie K. Silver, Aneesha Virani, Alicia A. Livinski, Mohammed Faizan Ahmed, Tiffany Kendig, Bismah Khalid, Jeremy Barnett, Anita Borhani, Graysen Bernard, and Kathleen Doyle Lyons
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Oncology ,Oncology (nursing) - Abstract
To characterize delivery features and explore effectiveness of telehealth-based cancer rehabilitation interventions that address disability in adult cancer survivors.A systematic review of electronic databases (CINAHL Plus, Cochrane Library: Database of Systematic Reviews, Embase, National Health Service's Health Technology Assessment, PubMed, Scopus, Web of Science) was conducted in December 2019 and updated in April 2021.Searches identified 3,499 unique studies. Sixty-eight studies met inclusion criteria. There were 81 unique interventions across included studies. Interventions were primarily delivered post-treatment and lasted an average of 16.5 weeks (SD = 13.1). They were most frequently delivered using telephone calls (59%), administered delivered by nursing professionals (35%), and delivered in a one-on-one format (88%). Risk of bias of included studies was primarily moderate to high. Included studies captured 55 measures of disability. Only 54% of reported outcomes had data that allowed calculation of effect sizes ranging -3.58 to 15.66.The analyses suggest small effects of telehealth-based cancer interventions on disability, though the heterogeneity seen in the measurement of disability makes it hard to draw firm conclusions. Further research using more diverse samples, common measures of disability, and pragmatic study designs is needed to advance telehealth in cancer rehabilitation.Telehealth-based cancer rehabilitation interventions have the potential to increase access to care designed to reduce disability across the cancer care continuum.
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- 2022
24. Additional file 2 of Tooth retention, health, and quality of life in older adults: a scoping review
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Atanda, Adejare Jay, Livinski, Alicia A., London, Steven D., Boroumand, Shahdokht, Weatherspoon, Darien, Iafolla, Timothy J., and Dye, Bruce A.
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InformationSystems_DATABASEMANAGEMENT - Abstract
Additional file 2: Supplementary Information. Search Strategy for Seven Databases.
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- 2022
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25. Exposure to Outdoor Particulate Matter Air Pollution and Risk of Gastrointestinal Cancers in Adults:A Systematic Review and Meta-Analysis of Epidemiologic Evidence
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Natalie Pritchett, Emily C. Spangler, George M. Gray, Alicia A. Livinski, Joshua N. Sampson, Sanford M. Dawsey, and Rena R. Jones
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Adult ,Air Pollutants ,CLEARANCE ,MUCOCILIARY ,Health, Toxicology and Mutagenesis ,MORTALITY ,Public Health, Environmental and Occupational Health ,Environmental Exposure ,PM2.5 ,COHORTS ,Air Pollution ,Humans ,Particulate Matter ,GLOBAL TRENDS ,Gastrointestinal Neoplasms - Abstract
Outdoor air pollution is a known lung carcinogen, but research investigating the association between particulate matter (PM) and gastrointestinal (GI) cancers is limited.We sought to review the epidemiologic literature on outdoor PM and GI cancers and to put the body of studies into context regarding potential for bias and overall strength of evidence.We conducted a systematic review and meta-analysis of epidemiologic studies that evaluated the association of fine PM [PM with an aerodynamic diameter ofTwenty studies met inclusion criteria and included participants from 14 countries; nearly all were of cohort design. All studies identified positive associations between PM exposure and risk of at least one GI cancer, although in 3 studies these relationships were not statistically significant. Three of 5 studies estimated associations withWe concluded there is some evidence of associations between
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- 2022
26. A bibliometric analysis of cancer research funders and collaborators in Kenya: 2007-2017
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Jasmin S. Vargas, Alicia A. Livinski, Alfred Karagu, Mishka K. Cira, Martha Maina, Ya-Ling Lu, and Anyona O. Joseph
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Biomedical Research ,Oncology ,Bibliometrics ,Health Policy ,Neoplasms ,Humans ,Kenya ,Research Personnel - Abstract
Cancer research is essential to the development and implementation of effective control strategies and interventions. In Kenya, cancer is the third leading cause of death. Country specific research conducted by local and international investigators can inform a national plan to address local needs across the cancer care continuum. This analysis aims to provide information about the trends and types of cancer research collaborations, funding, and outputs from 2007 to 2017, to understand gaps and opportunities to strengthen Kenya-led cancer research capacity.This analysis included 243 studies from a previously published phase 1 scoping review of oncology research conducted and published in Kenya from 2007 to 2017. The citation metadata was drawn from the Web of Science and PubMed and normalized in Microsoft Excel. Using Sci2, a series of bibliometric network analyses were conducted to identify funding patterns, collaborations between authors and institutions, and the types of cancer research conducted in Kenya. Gephi and Excel provided descriptive analyses and graphs of the network. The analyses are categorized into three themes: article production, collaboration, and research topics.The bibliometric analysis found 5 US-based government agencies are funding cancer research in Kenya. Kenya-Kenya institutional collaborations were most common, and half of authors with the most co-authored publications were from Kenya. The publication trend showed a gradual increase from 2011 to 2014 with a subsequent drop through 2017.This study identifies the funders and most often published Kenyan authors and Kenyan-based institutions publishing oncology research in Kenya. It also identifies future areas to focus research and the importance of continuing to build the writing and publishing capacity on oncology research by Kenyans.
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- 2021
27. DISP-10. A SYSTEMATIC REVIEW OF SEX DIFFERENCES OF INCIDENCE AND OVERALL SURVIVAL IN 15 NON-REPRODUCTIVE CANCERS
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Mantas Dmukauskas, Kristin Waite, Alicia Livinski, Jacob Edelson, Gino Cioffi, Chyren Hunter, Jalen Brown, Sarah Jackson, Minkyo Song, Chi-Ping Day, Alejandro Schaffer, and Jill Barnholtz-Sloan
- Subjects
Cancer Research ,Oncology ,Neurology (clinical) - Abstract
Sex is an important factor that influences disease development, progression, and treatment. In multiple non-reproductive cancers, sex differences in incidence, progression, treatment response, survival, and other clinical outcomes are observed. Overall, males have a 20% higher chance of developing cancer over their lifetime, and experience worse clinical outcomes when compared with females. The NIH recognizes the importance of sex as a biologic variable and addressing sex as a biological variable is now required for all researchers submitting NIH grants. While more researchers are investigating the role of sex differences in cancer, a systematic review that examines the patterns of sex differences in incidence and survival across 15 non-reproductive cancers has not yet been published. We performed a systematic review by searching five databases using keywords and controlled vocabulary terms for each concept of interest and limited to English language. Records were included if it reported sex differences in human adults (18+), addressed incidence, mortality, or survival, at least one of the 15 cancers of interest, and were a cohort, cross-sectional, RCT, or case control study. Covidence was used for screening and two reviewers independently screened each record at title/abstract and then full text. Two reviewers independently completed data extraction using Microsoft Excel and the Cochrane RoB 2.0, and JBI tools were used for risk of bias assessment. The searches and pilot of the methods are underway. Understanding the role sex-differences play on incidence and survival are important for adding to our understanding of advances in diagnosis and treatment of individuals with cancer.
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- 2022
28. Tooth retention, health, and quality of life in older adults: a scoping review
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Adejare Jay Atanda, Alicia A. Livinski, Steven D. London, Shahdokht Boroumand, Darien Weatherspoon, Timothy J. Iafolla, and Bruce A. Dye
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Tooth Loss ,Quality of Life ,Humans ,Nutritional Status ,Oral Health ,Mouth, Edentulous ,General Dentistry ,Aged - Abstract
Objective This scoping review describes the relationship between tooth retention, health, and quality of life in older adults. Methods Seven databases were searched for English language articles for subjects ≥ 65 y from 1981 to 2021. Exposure was tooth retention (≥ 20), and outcomes were general/systemic health and quality of life. Methodological quality was assessed using the Newcastle–Ottawa Scale and Cochrane Risk of Bias 2.0 tool. Results 140 articles were included, only four were randomized trials. Inter-rater agreement (κ) regarding study inclusion was 0.924. Most were assessed with low risk of bias (n = 103) and of good quality (n = 96). Most studies were conducted in Japan (n = 60) and Europe (n = 51) and only nine in the US. Tooth retention was referred to as “functional dentition” in 132 studies and “shortened dental arch” in 19 studies. Study outcomes were broadly synthesized as (1) cognitive decline/functional dependence, (2) health status/chronic diseases, (3) nutrition, and (4) quality of life. Discussion There is a positive relationship between tooth retention, overall health, and quality of life. Older adults retaining ≥ 20 teeth are less likely to experience poorer health. Having
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- 2021
29. The Use of Teledentistry in Facilitating Oral Health for Older Adults: A Scoping Review
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Ben-Omran, Munder O., Livinski, Alicia A., Kopycka-Kedzierawski, Dorota T., Boroumand, Shahdokht, Williams, Demetres, Weatherspoon, Darien J., Iafolla, Timothy J., Fontelo, Paul, and Dye, Bruce A.
- Subjects
Article - Abstract
BACKGROUND: Teledentistry is used in many countries to provide oral health services. However, using teledentistry to provide oral health services for older adults is not well documented. This knowledge gap needs to be addressed, especially when accessing a dental clinic is not possible and teledentistry might be the only way for many older adults to receive oral health services. TYPES OF STUDIES REVIEWED: Nine databases were searched, and 5,713 studies were screened using established eligibility criteria. Included studies were original research or review articles where the intervention of interest was delivered to an older adult population (age 60 and older) via teledentistry. Authors followed the “Preferred Reporting Items for Systematic reviews and Meta-Analyses” (PRISMA) extension for scoping review criteria. RESULTS: Nineteen studies were identified that met the criteria for inclusion. Only one study was from the US. Seven studies had results focusing only on older adult participants, with most of those conducted in elder care facilities. The remainder consisted of studies with mixed-age populations reporting distinct results and/or information for older adults. The included studies used teledentistry, in both synchronous and asynchronous modes, to provide services such as diagnosis, oral hygiene promotion, assessment and referral of oral emergencies, and post-intervention follow-ups. PRACTICAL IMPLICATIONS: The current use of teledentistry comprises a variety of promising applications. This review identifies and describes current uses, promising possibilities, and limitations of teledentistry to improve the oral health of older adults.
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- 2021
30. A prospective observational cohort study and systematic review of 40 patients with mouth and genital ulcers with inflamed cartilage (MAGIC) syndrome
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Emily Rose, Kaitlin A. Quinn, Emily Rominger, Cindy Clark, Keith A. Sikora, Omer Karadag, Alicia A. Livinski, Yiming Luo, Kristina V. Wells, Ertugrul C. Bolek, Wendy Goodspeed, Levent Kilic, Peter C. Grayson, and Marcela A. Ferrada
- Subjects
Adult ,medicine.medical_specialty ,Disease ,Rheumatology ,Internal medicine ,Medicine ,Humans ,Sex organ ,Genitalia ,Prospective Studies ,Relapsing polychondritis ,Aortitis ,Ulcer ,Mouth ,business.industry ,Behcet Syndrome ,technology, industry, and agriculture ,medicine.disease ,Checklist ,United States ,Observational Studies as Topic ,Anesthesiology and Pain Medicine ,Cartilage ,Cohort ,lipids (amino acids, peptides, and proteins) ,business ,Case series ,Cohort study - Abstract
Mouth and genital ulcers with inflamed cartilage (MAGIC) syndrome is characterized by overlapping features of relapsing polychondritis (RP) and Behcet's disease (BD). To date, no studies have defined the clinical spectrum of disease in a cohort of patients with MAGIC syndrome.Adult patients within an ongoing prospective, observational cohort study in RP were clinically assessed for MAGIC syndrome. A systematic review was conducted to identify additional cases of MAGIC syndrome by searching four databases: PubMed (US National Library of Medicine), Embase (Elsevier), Scopus (Elsevier) and Web of Science: Core Collection (Clarivate Analytics). The inclusion criteria used were: [1] patients of any age or gender who were diagnosed with MAGIC syndrome, or both RP and BD; [2] case report or case series study; [3] published from 1985 - July 2020; and [4] in English language. Risk of bias was assessed using a checklist developed by the authors and based on the Consensus-based Clinical Case Reporting (CARE) Guidelines. Search results screening, article inclusion, data extraction and risk of bais assessment was performed independently by two investigators. Clinical characteristics, particularly BD-related features, were compared between patients with MAGIC syndrome and cases of non-MAGIC RP. The performance characteristics of different criteria to classify MAGIC syndrome were also evaluated.Out of 96 patients with RP, 13 (14%) patients were diagnosed with MAGIC syndrome. For the systematic review, 380 articles were retrieved of which 90 were screened at title and abstract levels. Of these screened, 60 were excluded and 30 proceeded to full text review where an additional 8 were excluded. Twenty-two articles were included in our review and from which 27 additional cases of MAGIC syndrome were identified. Pooling all 40 cases together and comparing them with non-MAGIC RP, there was a significantly higher prevalence of ocular involvement (28% vs 4%, p0.01), cutaneous involvement (35% vs 1%, p0.01), GI involvement (23% vs 4%, p0.01), and CNS involvement (8% vs 0, p = 0.04) in MAGIC syndrome. A higher prevalence of aortitis (23% vs 1%, p0.01), Raynaud's phenomenon (54% vs 11%, p0.01), and elevated anti-collagen II antibodies (50% vs 9%, p = 0.04) were observed in MAGIC syndrome. Fulfillment of either McAdam's or Damiani's Criteria for RP plus the International Criteria for Behçet's Disease had excellent sensitivity (98%) to classify cases of MAGIC syndrome.A substantial proportion of patients with RP can be clinically diagnosed with MAGIC syndrome. These patients have features of RP, BD, and other unique features including aortitis, Raynaud's phenomenon and elevated anti-collagen II antibodies.
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- 2021
31. Systematic Review of Functional Outcomes in Cancer Rehabilitation
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Alix Sleight, Lynn H. Gerber, Timothy F. Marshall, Alicia Livinski, Catherine M. Alfano, Shana Harrington, Ann Marie Flores, Aneesha Virani, Xiaorong Hu, Sandra A. Mitchell, Mitra Varedi, Melissa Eden, Samah Hayek, Beverly Reigle, Anya Kerkman, Raquel Neves, Kathleen Jablonoski, Eileen Danaher Hacker, Virginia Sun, Robin Newman, Karen Kane McDonnell, Allison L'Hotta, Alana Schoenhals, and Nicole L. Stout DPT
- Subjects
Adult ,Neoplasms ,Rehabilitation ,Activities of Daily Living ,Quality of Life ,Humans ,Physical Therapy, Sports Therapy and Rehabilitation ,Prospective Studies ,Exercise ,Fatigue - Abstract
To systematically review the evidence regarding rehabilitation interventions targeting optimal physical or cognitive function in adults with a history of cancer and describe the breadth of evidence as well as strengths and limitations across a range of functional domains.PubMed, Cumulative Index to Nursing and Allied Health Plus, Scopus, Web of Science, and Embase. The time scope was January 2008 to April 2019.Prospective, controlled trials including single- and multiarm cohorts investigating rehabilitative interventions for cancer survivors at any point in the continuum of care were included, if studies included a primary functional outcome measure. Secondary data analyses and pilot/feasibility studies were excluded. Full-text review identified 362 studies for inclusion.Extraction was performed by coauthor teams and quality and bias assessed using the American Academy of Neurology (AAN) Classification of Evidence Scheme (class I-IV).Studies for which the functional primary endpoint achieved significance were categorized into 9 functional areas foundational to cancer rehabilitation: (1) quality of life (109 studies), (2) activities of daily living (61 studies), (3) fatigue (59 studies), (4) functional mobility (55 studies), (5) exercise behavior (37 studies), (6) cognition (20 studies), (7) communication (10 studies), (8) sexual function (6 studies), and (9) return to work (5 studies). Most studies were categorized as class III in quality/bias. Averaging results found within each of the functional domains, 71% of studies reported statistically significant results after cancer rehabilitation intervention(s) for at least 1 functional outcome.These findings provide evidence supporting the efficacy of rehabilitative interventions for individuals with a cancer history. The findings should be balanced with the understanding that many studies had moderate risk of bias and/or limitations in study quality by AAN criteria. These results may provide a foundation for future work to establish clinical practice guidelines for rehabilitative interventions across cancer disease types.
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- 2021
32. Disaster Medicine: A Comprehensive Review of the Literature From 2016
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Shayne Brannman, Gregory R Ciottone, Audrey Mazurek, Scott A Goldberg, John L. Hick, Jonathan L. Burstein, Jennifer Nieratko, Andrew Milsten, Ira Nemeth, Paul D. Biddinger, Ritu R. Sarin, Eric Goralnick, Meghan Treber, and Alicia A. Livinski
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medicine.medical_specialty ,business.industry ,Research ,Public Health, Environmental and Occupational Health ,MEDLINE ,Scopus ,Poison control ,Grey literature ,Global Health ,Disaster Medicine ,Preparedness ,Family medicine ,Health care ,medicine ,Humans ,Health education ,business ,Psychology ,Disaster medicine - Abstract
Objective:The Society of Academic Emergency Medicine Disaster Medicine Interest Group, the Office of the Assistant Secretary for Preparedness and Response – Technical Resources, Assistance Center, and Information Exchange (ASPR TRACIE) team, and the National Institutes of Health Library searched disaster medicine peer-reviewed and gray literature to identify, review, and disseminate the most important new research in this field for academics and practitioners.Methods:MEDLINE/PubMed and Scopus databases were searched with key words. Additional gray literature and focused hand search were performed. A Level I review of titles and abstracts with inclusion criteria of disaster medicine, health care system, and disaster type concepts was performed. Eight reviewers performed Level II full-text review and formal scoring for overall quality, impact, clarity, and importance, with scoring ranging from 0 to 20. Reviewers summarized and critiqued articles scoring 16.5 and above.Results:Articles totaling 1176 were identified, and 347 were screened in a Level II review. Of these, 193 (56%) were Original Research, 117 (34%) Case Report or other, and 37 (11%) were Review/Meta-Analysis. The average final score after a Level II review was 11.34. Eighteen articles scored 16.5 or higher. Of the 18 articles, 9 (50%) were Case Report or other, 7 (39%) were Original Research, and 2 (11%) were Review/Meta-Analysis.Conclusions:This first review highlighted the breadth of disaster medicine, including emerging infectious disease outbreaks, terror attacks, and natural disasters. We hope this review becomes an annual source of actionable, pertinent literature for the emerging field of disaster medicine.
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- 2019
33. BTK inhibitors for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2): A Systematic Review
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Michael Stack, Luigi D. Notarangelo, Michail S. Lionakis, Keith Sacco, Riccardo Castagnoli, and Alicia A. Livinski
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medicine.medical_specialty ,X-linked agammaglobulinemia ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Chronic lymphocytic leukemia ,Immunology ,Lung injury ,Cytokine storm ,Article ,law.invention ,chemistry.chemical_compound ,Randomized controlled trial ,Bruton’s tyrosine kinase ,law ,Full Length Article ,Internal medicine ,medicine ,Immunology and Allergy ,Bruton's tyrosine kinase ,COVID-19, Coronavirus disease 2019 ,SARS-CoV-2, Severe acute respiratory syndrome coronavirus 2 ,CLL, Chronic lymphocytic leukemia ,Acute respiratory distress syndrome ,biology ,Btk inhibitors ,Acalabrutinib ,SARS-CoV-2 ,business.industry ,BTKinib, Bruton's tyrosine kinase inhibitor ,Ibrutinib ,COVID-19 ,Macroglobulinemia ,medicine.disease ,Intensive care unit ,Hospitalization ,ICU, Intensive care unit ,WM, Waldenstrom's macroglobulinemia ,chemistry ,biology.protein ,JAK, Janus kinase ,business - Abstract
ImportanceThe Bruton tyrosine kinase (BTK) regulates B cell and macrophage signaling, development, survival, and activation. BTK inhibition was shown to protect against lethal influenza-induced acute lung injury in mice. Inhibiting BTK has been hypothesized to ameliorate lung injury in patients with severe coronavirus disease 2019 (COVID-19). ObjectiveTo evaluate the use of BTK inhibitors (BTKinibs) during COVID-19 and assess how they may affect patient outcomes.Evidence ReviewWe searched PubMed, Embase, and Web of Science: Core on December 30, 2020. Clinical studies with at least 5 COVID-19 patients treated with BTKinibs were included. Case reports and reviews were excluded.FindingsOne hundred twenty-five articles were identified, 6 of which met inclusion criteria. Sample size ranged from 6 to 126 patients. Patient populations included subjects hospitalized with COVID-19 (6/6) and admitted to the intensive care unit (5/6). Patient age ranged between 35 and 98 years. Four studies included patients already receiving BTKinibs for their lymphoproliferative disease, 1 for Waldenstrom’s macroglobulinemia and 3 for chronic lymphocytic leukemia (CLL). The most common clinical outcomes measured were oxygen requirements (4/6) and hospitalization rate or duration (3/6). Differences in standard-of-care reflected the date of study and pre-existing conditions in the various patient cohorts. Full-dose acalabrutinib was evaluated in 2 studies, one study evaluated full-dose ibrutinib, and another study evaluated both ibrutinib and acalabrutinib. The remainder 2 studies described outcomes in CLL patients on multiple BTKinibs and other CLL-targeted treatments. Three studies showed decreased oxygen requirements in patients who started or continued BTKinibs. All three studies that evaluated hospitalization rate or duration found favorable outcomes in those on BTKinibs. Conclusions and Relevance BTKinib use was associated with decreased oxygen requirements and decreased hospitalization rates and duration. However, randomized clinical trials are needed to validate the beneficial effects of BTKinibs for acute SARS-CoV-2 infection.
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- 2021
34. The Role of Extracellular Vesicles in β-Cell Function and Viability: A Scoping Review
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Alicia A. Livinski, Anne F. Fish, Stephanie Chidester, and Paule V. Joseph
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0301 basic medicine ,insulin secretion ,Cell Survival ,Endocrinology, Diabetes and Metabolism ,Adipose tissue ,030209 endocrinology & metabolism ,Review ,Cell Communication ,Biology ,medicine.disease_cause ,lcsh:Diseases of the endocrine glands. Clinical endocrinology ,Exosome ,Autoimmunity ,Extracellular Vesicles ,Islets of Langerhans ,03 medical and health sciences ,Endocrinology ,0302 clinical medicine ,Immune system ,Insulin-Secreting Cells ,Diabetes Mellitus ,medicine ,Animals ,Humans ,exosome ,lcsh:RC648-665 ,diabetes ,Mesenchymal stem cell ,Extracellular vesicle ,β-cell ,Cell biology ,Crosstalk (biology) ,030104 developmental biology ,medicine.anatomical_structure ,extracellular vesicle ,Bone marrow - Abstract
Extracellular vesicles (EVs) released by cells throughout the body have been implicated in diabetes pathogenesis. Understanding the role of EVs in regulation of β-cell function and viability may provide insights into diabetes etiology and may lead to the development of more effective screening and diagnostic tools to detect diabetes earlier and prevent disease progression. This review was conducted to determine what is known from the literature about the effect of EV crosstalk on pancreatic β-cell function and viability in the pathogenesis of diabetes mellitus, to perform a gap analysis for future research directions, and to discuss implications of available evidence for diabetes care. The literature search yielded 380 studies from which 31 studies were determined to meet eligibility criteria. The majority of studies had the disease context of autoimmunity in T1DM. The most commonly studied EV crosstalk dynamics involved localized EV-mediated communication between β-cells and other islet cells, or between β-cells and immune cells. Other organs and tissues secreting EVs that affect β-cells include skeletal muscle, hepatocytes, adipocytes, immune cells, bone marrow, vascular endothelium, and mesenchymal stem cells. Characterization of EV cargo molecules with regulatory effects in β-cells was conducted in 24 studies, with primary focus on microRNA cargo. Gaps identified included scarcity of evidence for the effect on β-cell function and viability of EVs from major metabolic organs/tissues such as muscle, liver, and adipose depots. Future research should address these gaps as well as characterize a broader range of EV cargo molecules and their activity in β-cells.
- Published
- 2020
35. A Panoply of Rheumatological Manifestations in Patients with GATA2 Deficiency
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Sandra G. Williams, Alicia A. Livinski, James D. Katz, Janine Daub, Beatriz E. Marciano, Katlin R. Poladian, Cara M. Kenney, Abhimanyu Amarnani, Cindy Palmer, Steven M. Holland, Amy P. Hsu, and Daniele Avila
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Male ,0301 basic medicine ,medicine.medical_specialty ,GATA2 Deficiency ,Helper T lymphocyte ,T cell ,lcsh:Medicine ,Autoimmunity ,medicine.disease_cause ,Article ,03 medical and health sciences ,0302 clinical medicine ,Rheumatology ,Rheumatic Diseases ,Internal medicine ,medicine ,Humans ,lcsh:Science ,Retrospective Studies ,Ankylosing spondylitis ,Multidisciplinary ,business.industry ,lcsh:R ,Immune dysregulation ,medicine.disease ,Dermatology ,030104 developmental biology ,medicine.anatomical_structure ,Immune System Diseases ,Rheumatoid arthritis ,lcsh:Q ,Primary immunodeficiency disorders ,Female ,business ,030215 immunology - Abstract
Purpose: To characterize rheumatological manifestations of GATA2 deficiency. Methods: Single-center, retrospective review of 157 patients with GATA2 deficiency. Disease course, laboratory results, and imaging findings were extracted. In-person rheumatological assessments were performed on selected, available patients. A literature search of four databases was conducted to identify additional cases. Results: Rheumatological findings were identified in 28 patients, out of 157 cases reviewed (17.8%). Twenty-two of those patients (78.6%) reported symptom onset prior to or in conjunction with the molecular diagnosis of GATA2 deficiency. Notable rheumatological manifestations included: piezogenic pedal papules (PPP), joint hyperextensibility, early onset osteoarthritis, ankylosing spondylitis, and seronegative erosive rheumatoid arthritis. In peripheral blood of patients with rheumatological manifestations and GATA2 deficiency, CD4+ CD3+ helper T cells and naïve CD3+ CD4+ CD62L+ CD45RA+ helper T cell subpopulation fractions were significantly lower, while CD8+ cytotoxic T cell fractions were significantly higher, compared to those without rheumatological manifestations and with GATA2 deficiency. No changes in CD19, CD3, or NK populations were observed. Conclusion: GATA2 deficiency is associated with a broad spectrum of rheumatological disease manifestations. Low total helper T lymphocyte proportions and low naïve helper T cell proportions are associated with those most at risk of overt rheumatological manifestations. Further, PPP and joint hyperextensibility may explain some of the nonimmunologically-mediated joint problems encountered in patients with GATA2 deficiency. This catalogue suggests that rheumatological manifestations and immune dysregulation are relatively common in GATA2 deficiency.
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- 2020
36. Statins for Smith-Lemli-Opitz syndrome
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Rami A. Ballout, Alicia A. Livinski, Simona Bianconi, Alan T. Remaley, Forbes D. Porter, and Yi-Ping Fu
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Male ,Pediatrics ,medicine.medical_specialty ,MEDLINE ,Irritability ,Article ,Bile Acids and Salts ,03 medical and health sciences ,0302 clinical medicine ,Intervention (counseling) ,medicine ,Humans ,Pharmacology (medical) ,030212 general & internal medicine ,Child ,Randomized Controlled Trials as Topic ,Cross-Over Studies ,Aggression ,business.industry ,nutritional and metabolic diseases ,Vitamins ,medicine.disease ,Smith-Lemli-Opitz Syndrome ,Cholesterol ,Smith–Lemli–Opitz syndrome ,Anxiety ,Female ,Statin therapy ,medicine.symptom ,Hydroxymethylglutaryl-CoA Reductase Inhibitors ,business ,030217 neurology & neurosurgery - Abstract
Smith-Lemli-Opitz syndrome (SLOS) is a multiple congenital malformations syndrome caused by defective cholesterol biosynthesis. Affected individuals show cholesterol deficiency and accumulation of various precursor molecules, mainly 7-dehydrocholesterol and 8-dehydrocholesterol. There is currently no cure for SLOS, with cholesterol supplementation being primarily a biochemical therapy of limited evidence. However, several anecdotal reports and preclinical studies have highlighted statins as a potential therapy for SLOS.To evaluate the effects of statins, either alone or in combination with other non-statin therapies (e.g. cholesterol, bile acid, or vitamin co-supplementation), compared to cholesterol supplementation alone or in combination with other non-statin therapies (e.g. bile acid or vitamin supplementation) on several important outcomes including overall survival, neurobehavioral features, and adverse effects in individuals with SLOS.We searched CENTRAL, MEDLINE, Embase, five other databases and three trials registers on 15 February 2022, together with reference checking, citation searching and contact with study authors to identify additional studies.Randomized controlled trials (RCTs) and quasi-RCTs with parallel or cross-over designs, and non-randomized studies of interventions (NRSIs) including non-randomized trials, cohort studies, and controlled before-and-after studies, were eligible for inclusion in this review if they met our prespecified inclusion criteria, i.e. involved human participants with biochemically or genetically diagnosed SLOS receiving statin therapy or cholesterol supplementation, or both.Two authors screened titles and abstracts and subsequently full-texts for all potentially-relevant references. Both authors independently extracted relevant data from included studies and assessed the risks of bias. We analyzed the data extracted from the included NRSIs and cohort studies separately from the data extracted from the single included RCT. We used a random-effects model to account for the inherent heterogeneity and methodological variation between these different study designs. We used GRADE to assess the certainty of evidence.We included six studies (61 participants with SLOS); one RCT (N = 18), three prospective NRSIs (N = 20), and two retrospective NRSIs (N = 22). Five studies included only children, and two limited their participant inclusion by disease severity. Overall, there were nearly twice as many males as females. All six studies compared add-on statin therapy to cholesterol supplementation alone. However, the dosages, formulations, and durations of treatment were highly variable across studies. We judged the RCT as having a high risk of bias due to missing data and selective reporting. All included NRSIs had a serious or critical overall risk of bias assessed by the Risk Of Bias In Non-randomized Studies of Interventions tool (ROBINS-I). None of the included studies evaluated survival or reported quality of life (QoL). Only the included RCT formally assessed changes in the neurobehavioral manifestations of SLOS, and we are uncertain whether statin therapy improves this outcome (very low-certainty evidence). We are also uncertain whether the adverse events reported in the RCT were statin-related (very low-certainty evidence). In contrast, the adverse events reported in the NRSIs seem to be possibly due to statin therapy (risk ratio 13.00, 95% confidence interval 1.85 to 91.49; P = 0.01; low-certainty evidence), with only one of the NRSIs retrospectively mentioning changes in the irritability of two of their participants. We are uncertain whether statins affect growth based on the RCT or NRSI results (very low-certainty evidence). The RCT showed that statins may make little or no difference to plasma biomarker levels (low-certainty evidence), while we are uncertain of their effects on such parameters in the NRSIs (very low-certainty evidence).Currently, there is no evidence on the potential effects of statin therapy in people with SLOS regarding survival or QoL, and very limited evidence on the effects on neurobehavioral manifestations. Likewise, current evidence is insufficient and of very low certainty regarding the effects of statins on growth parameters in children with SLOS and plasma or cerebrospinal fluid (CSF) levels of various disease biomarkers. Despite these limitations, current evidence seemingly suggests that statins may increase the risk of adverse reactions in individuals with SLOS receiving statins compared to those who are not. Given the insufficient evidence on potential benefits of statins in individuals with SLOS, and their potential for causing adverse reactions, anyone considering this therapy should take these findings into consideration. Future studies should address the highlighted gaps in evidence on the use of statins in individuals with SLOS by collecting prospective data on survival and performing serial standardized assessments of neurobehavioral features, QoL, anthropometric measures, and plasma and CSF biomarker levels after statin introduction. Future studies should also attempt to use consistent dosages, formulations and durations of cholesterol and statin therapy.
- Published
- 2020
37. Chemical, Biological, Radiological, Nuclear, and Explosive (CBRNE) Science and the CBRNE Science Medical Operations Science Support Expert (CMOSSE)
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Meghan Treber, Jessica M Appler, Richard J. Hatchett, Thomas F MacKAY, Alicia A. Livinski, Tammy P. Taylor, Ann A. Jakubowski, Monique K Mansoura, Daniel Dodgen, James J. James, Natalie N Grant, Mary J. Homer, Judith L. Bader, Maria Julia Marinissen, Andrea DiCarlo-Cohen, Kenneth D. Cliffer, Derek Estes, C. Norman Coleman, George Korch, Chad Hrdina, Lynne Wathen, Patrick Byrne, David M. Weinstock, Dan Hanfling, John F. Koerner, Scott V. Nystrom, Andrew L. Garrett, Rocco Casagrande, John L. Hick, Edward M. Kennedy, Irwin E. Redlener, Nicholas Dainiak, Cullen Case, Aubrey Miller, and Brooke Buddemeier
- Subjects
Engineering ,Emergency Medical Services ,Knowledge management ,Chemical Hazard Release ,0211 other engineering and technologies ,Biohazard Release ,Disaster Planning ,02 engineering and technology ,computer.software_genre ,Article ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Explosive Agents ,Incident management ,Strategic National Stockpile ,Systems management ,Humans ,021110 strategic, defence & security studies ,business.industry ,National Incident Management System ,Public Health, Environmental and Occupational Health ,Resilience (organizational) ,Subject-matter expert ,Systems analysis ,business ,Working group ,Radioactive Hazard Release ,computer - Abstract
A national need is to prepare for and respond to accidental or intentional disasters categorized as chemical, biological, radiological, nuclear, or explosive (CBRNE). These incidents require specific subject-matter expertise, yet have commonalities. We identify 7 core elements comprising CBRNE science that require integration for effective preparedness planning and public health and medical response and recovery. These core elements are (1) basic and clinical sciences, (2) modeling and systems management, (3) planning, (4) response and incident management, (5) recovery and resilience, (6) lessons learned, and (7) continuous improvement. A key feature is the ability of relevant subject matter experts to integrate information into response operations. We propose the CBRNE medical operations science support expert as a professional who (1) understands that CBRNE incidents require an integrated systems approach, (2) understands the key functions and contributions of CBRNE science practitioners, (3) helps direct strategic and tactical CBRNE planning and responses through first-hand experience, and (4) provides advice to senior decision-makers managing response activities. Recognition of both CBRNE science as a distinct competency and the establishment of the CBRNE medical operations science support expert informs the public of the enormous progress made, broadcasts opportunities for new talent, and enhances the sophistication and analytic expertise of senior managers planning for and responding to CBRNE incidents.
- Published
- 2019
38. The Culture of Biosafety, Biosecurity, and Responsible Conduct in the Life Sciences: A Comprehensive Literature Review
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Alicia A. Livinski, Dana Perkins, Kathleen Danskin, and A. Elise Rowe
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021110 strategic, defence & security studies ,Health, Toxicology and Mutagenesis ,Biosecurity ,0211 other engineering and technologies ,Public Health, Environmental and Occupational Health ,Organizational culture ,Review Article ,06 humanities and the arts ,02 engineering and technology ,Management, Monitoring, Policy and Law ,0603 philosophy, ethics and religion ,Biocontainment ,Biosafety ,Infectious disease (medical specialty) ,Engineering ethics ,060301 applied ethics ,Business ,Biotechnology - Abstract
INTRODUCTION: Managing biological risks requires an organizational culture that holistically ensures the biosafety, biosecurity, and biocontainment of infectious disease agents and toxins, in addition to conducting science in a responsible manner, complying with relevant laws, regulations, guidelines, and policies, as well as emphasizing norms, values, and beliefs of the entire life sciences profession. METHODS: Drawing upon the Federal Experts Security Advisory Panel's (FESAP's) 2014 recommendation to “strengthen a culture that emphasizes biosafety, laboratory biosecurity, and responsible conduct in the life sciences,” we undertook a comprehensive literature review of the culture of biosafety, biosecurity, and responsible conduct in the life sciences, including metrics by which to evaluate interventions at the organizational level. RESULTS: We identified 4031 unique citations published from January 2001 to January 2017 by searching the MEDLINE/PubMed, Scopus, Web of Science, and Global Health databases. In addition, a subset of 326 articles was reviewed in full. DISCUSSION: We found that while there were discussions in the literature about specific elements of culture (management systems, leadership and/or personnel behavior, beliefs and attitudes, or principles for guiding decisions and behaviors), there was a general lack of integration of these concepts, as well as limited information about specific indicators or metrics and the effectiveness of training or similar interventions. CONCLUSION: We concluded that life scientists seeking to foster a culture of biosafety and biosecurity should learn from the substantial literature in analogous areas such as nuclear safety and security culture, high-reliability organizations, and the responsible conduct of research, among others.
- Published
- 2018
39. The use of teledentistry in facilitating oral health for older adults
- Author
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Timothy Iafolla, Shahdokht Boroumand, Dorota T Kopycka-Kedzierawski, Munder O. Ben-Omran, Darien Weatherspoon, Demetres Williams, Bruce A. Dye, Paul Fontelo, and Alicia A. Livinski
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medicine.medical_specialty ,Telemedicine ,Referral ,business.industry ,Telehealth ,CINAHL ,Oral hygiene ,law.invention ,Systematic review ,Randomized controlled trial ,law ,Family medicine ,medicine ,business ,Teledentistry ,General Dentistry - Abstract
Background Teledentistry is used in many countries to provide oral health care services. However, using teledentistry to provide oral health care services for older adults is not well documented. This knowledge gap needs to be addressed, especially when accessing a dental clinic is not possible and teledentistry might be the only way for many older adults to receive oral health care services. Types of Studies Reviewed Nine databases were searched and 3,396 studies were screened using established eligibility criteria. Included studies were original research or review articles in which the intervention of interest was delivered to an older adult population (≥ 60 years) via teledentistry. The authors followed the Preferred Reporting Items for Systematic Reviews and Meta-Analyses Extension for Scoping Review criteria. Results Nineteen studies were identified that met the criteria for inclusion. Only 1 study was from the United States. Seven studies had results focusing on older adult participants only, with most of those conducted in elder care facilities. The remainder consisted of studies with mixed-age populations reporting distinct results or information for older adults. The included studies used teledentistry, in both synchronous and asynchronous modes, to provide services such as diagnosis, oral hygiene promotion, assessment and referral of oral emergencies, and postintervention follow-up. Conclusions and Practical Implications Teledentistry comprises a variety of promising apps. The authors identified and described uses, promising possibilities, and limitations of teledentistry to improve the oral health of older adults.
- Published
- 2021
40. Abstract 114: Funders and Collaborators of Cancer Research in Kenya, 2007-2017: A Bibliometric Analysis
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Jasmin Vargas, Anyona Joseph, Martha Maina, Alfred Karagu, Mishka Cira, Ya-Ling Lu, and Alicia Livinski
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Oncology ,Epidemiology - Abstract
Purpose: It is well established that cancer research is essential to the development and implementation of effective control strategies and interventions. In Kenya, cancer is the third leading cause of death. Country specific research conducted by both local and international investigators has the potential to shape a national plan which addresses local needs across the cancer care continuum. This analysis aims to provide information about the trends in research collaborations, funding and outputs from 2007-2017 types of research collaborations, institutional and individual research collaborations, the types of cancer in order to understand gaps and opportunities to strengthen Kenya-led cancer research capacity. Methods: This analysis included 243 studies from a previously published phase 1 scoping review of oncology research conducted in Kenya from 2007-2017. The citation metadata was drawn from Pubmed and manually standardized in Microsoft Excel. Using Sci2, a series of bibliometric network analyses were conducted to identify funding patterns, collaborations between authors and institutions, and the types of cancer research conducted in Kenya. Gephi and Excel provided descriptive analyses and graphs of the network. The analyses are categorized into three themes: article production, collaboration, and research topics. These findings were contextualized by study co-authors from Kenya and the US. Results: The bibliometric analysis described which agencies are funding cancer research in Kenya, which authors and institutions are collaborating with whom, and the cancer research areas most published on in this dataset. The publication trend from 2007-2017 was highlighted, emphasizing the historical development and enabling important recognition of researchers and funders in advancing medical oncology in Kenya. Conclusion: This study identifies future areas for collaborations between investigators in similar sub-fields and cancer research funding priorities for the nation. The findings provide a bigger picture that will guide policymakers on developing evidence-based decision-making, planning to strengthen future research capacity, and funding. Citation Format: Jasmin Vargas, Anyona Joseph, Martha Maina, Alfred Karagu, Mishka Cira, Ya-Ling Lu, Alicia Livinski. Funders and Collaborators of Cancer Research in Kenya, 2007-2017: A Bibliometric Analysis [abstract]. In: Proceedings of the 9th Annual Symposium on Global Cancer Research; Global Cancer Research and Control: Looking Back and Charting a Path Forward; 2021 Mar 10-11. Philadelphia (PA): AACR; Cancer Epidemiol Biomarkers Prev 2021;30(7 Suppl):Abstract nr 114.
- Published
- 2021
41. Informed consent in dental care and research for the older adult population
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Margo R. Adesanya, Amrita Mukherjee, Alicia A. Livinski, Bruce A. Dye, Shahdokht Boroumand, Joseph Millum, Timothy Iafolla, and Steffany Chamut
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Geriatrics ,medicine.medical_specialty ,Mini–Mental State Examination ,medicine.diagnostic_test ,business.industry ,Dental care ,03 medical and health sciences ,0302 clinical medicine ,Informed consent ,Family medicine ,Health care ,Dental Care for Aged ,medicine ,030212 general & internal medicine ,Geriatric dentistry ,Cognitive decline ,business ,General Dentistry ,030217 neurology & neurosurgery - Abstract
Background Ethics in health care and research is based on the fundamental principle of informed consent. However, informed consent in geriatric dentistry is not well documented. Poor health, cognitive decline, and the passive nature of many geriatric patients complicate this issue.
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- 2017
42. Moving Toward an Evidence-Informed Cancer Control Strategy: A Scoping Review of Oncology Research in Kenya
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Damazo T. Kadengye, A. Karagu, Nathan Brand, Alicia A. Livinski, Mishka K. Cira, Veronica Manduku, Mina Akhavan, Zeinab Gura, Helen Meme, Catherine Kyobutungi, and Gershim Asiki
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Cervical cancer ,Oncology ,medicine.medical_specialty ,education.field_of_study ,Cancer Research ,Descriptive statistics ,business.industry ,Health Policy ,Population ,Scopus ,MEDLINE ,Grey literature ,medicine.disease ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Internal medicine ,Global health ,medicine ,Observational study ,030212 general & internal medicine ,business ,education - Abstract
PURPOSE In 2017, the Kenya Ministry of Health launched the National Cancer Control Strategy 2017 to 2022. A scoping review of oncology research in Kenya was conducted to understand the scope of—and gaps in—existing research and inform the development of the national cancer research agenda. METHODS We searched PubMed/MEDLINE, Embase, Scopus, and Global Health databases using controlled vocabulary and keywords to identify oncology research with a study site in Kenya, published in English, from 2007 to 2017. Fifteen journals and additional gray literature sources were hand searched. Screening of titles, abstracts, and full text was completed by pairs of 2 reviewers, with a third reviewer reconciling discrepancies. From included studies, data were extracted and coded using Google Forms. Microsoft Excel was used for descriptive statistics. RESULTS Of the 284 included articles, a majority were analytic observational studies (66.9%). The top 5 cancers studied were cervical cancer (n = 106; 35.9%), breast cancer (n = 25; 11.9%), Burkitt lymphoma (n = 23; 8.5%), esophageal cancer (n = 15; 5.1%), and pediatric cancers (n = 12; 4.1%). Primary focus areas were early detection, diagnosis, and prognosis and cancer control, survivorship, and outcomes research. Kenyatta National Hospital, Moi Teaching and Referral Hospital, and University of Nairobi were most often cited as research host institutions. One hundred twenty-three unique funding sources were reported, with the most prevalent study funding sources by region being North America (48%), Europe (28.8%), and Middle East/Africa (17.6%). The US National Institutes of Health was cited as the leading funding source of cancer research in Kenya. CONCLUSION This scoping review provides an overview of the published literature on cancer research conducted in Kenya. It highlights cancer research by cancer type, location, and focus area. It also focuses attention on research gaps, as well as the need for rigorous, well-conducted population-based studies, longitudinal studies, and randomized controlled trials aligned with the cancer burden in Kenya.
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- 2020
43. Exposure to Particulate Matter Air Pollution and the Incidence and Mortality of GI Cancers: A Systematic Review
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Alicia A. Livinski, Emily Spangler, Natalie Haley, Sanford Dawsey, and Rena Jones
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Cancer Research ,business.industry ,Incidence (epidemiology) ,Air pollution ,Cancer ,Particulates ,medicine.disease ,medicine.disease_cause ,Oncology ,Environmental health ,medicine ,Hum ,business ,Asthma - Abstract
PURPOSE High levels of particulate matter (PM) air pollution increase the risk of developing cardiovascular diseases, asthma, and cancer. Outdoor air pollution, especially PM, is classified as a human carcinogen on the basis of associations with lung cancer, but research investigating other cancer sites is limited. This systematic review investigates the scope and quality of existing literature on PM and the incidence and mortality of GI cancers. METHODS This review was conducted in accordance with the PRISMA protocol guidelines and submitted under PROSPERO ID: 139597. Initial searches of 5 databases yielded 2,041 articles, of which 762 duplicates were removed. Eligible studies evaluated an association between PM and at least one GI cancer. The titles and abstracts of 1,279 articles were screened independently and 102 articles were selected for additional screening. Ten studies were included in the final analysis. We evaluated the overall quality of included studies using GRADE criteria. RESULTS All articles meeting the criteria for inclusion were of cohort study design and published in 2015 or later. Methods for assessing PM exposure varied. More than one half (n = 6) of the studies investigated liver cancer. Most met the GRADE criteria for moderate certainty or greater. Six studies found a statistically significant positive association, and none found evidence of a negative association. CONCLUSION Evidence of a positive association between the incidence and mortality of GI cancers exists; however, few studies have evaluated this association. Methods of assessing exposure are highly variable. Future researchers should strive to conduct more studies in the most affected geographic areas to evaluate the impact of different PM exposure assessment approaches on observed associations, and include the evaluation of cancer subtypes and specific chemical components of PM.
- Published
- 2020
44. Data sharing in PLOS ONE: An analysis of Data Availability Statements
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Alicia A. Livinski, Lissa N. Snyders, Douglas J. Joubert, Ya-Ling Lu, Christopher W. Belter, Lisa Federer, and Holly Thompson
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0301 basic medicine ,Research Validity ,Drug Research and Development ,Research Facilities ,Science Policy ,Science ,Political Science ,MEDLINE ,Information Dissemination ,Public policy ,Social Sciences ,Accounting ,Public Policy ,Institutional Repositories ,Research and Analysis Methods ,Information Centers ,03 medical and health sciences ,0302 clinical medicine ,Open Science ,Open Data ,Medicine and Health Sciences ,Clinical Trials ,Scientific Publishing ,Statement (computer science) ,Pharmacology ,Multidisciplinary ,business.industry ,Publications ,Research Assessment ,Reproducibility ,Randomized Controlled Trials ,Data sharing ,Open data ,030104 developmental biology ,Data analysis ,Medicine ,Science policy ,Business ,Clinical Medicine ,030217 neurology & neurosurgery ,Research Article - Abstract
A number of publishers and funders, including PLOS, have recently adopted policies requiring researchers to share the data underlying their results and publications. Such policies help increase the reproducibility of the published literature, as well as make a larger body of data available for reuse and re-analysis. In this study, we evaluate the extent to which authors have complied with this policy by analyzing Data Availability Statements from 47,593 papers published in PLOS ONE between March 2014 (when the policy went into effect) and May 2016. Our analysis shows that compliance with the policy has increased, with a significant decline over time in papers that did not include a Data Availability Statement. However, only about 20% of statements indicate that data are deposited in a repository, which the PLOS policy states is the preferred method. More commonly, authors state that their data are in the paper itself or in the supplemental information, though it is unclear whether these data meet the level of sharing required in the PLOS policy. These findings suggest that additional review of Data Availability Statements or more stringent policies may be needed to increase data sharing.
- Published
- 2017
45. Both hemispheric influenza vaccine recommendations would have missed near half of the circulating viruses in Madagascar
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Julia Guillebaud, Jean-Michel Heraud, Alicia A. Livinski, Wladimir J. Alonso, Norosoa Harline Razanajatovo, Unité de Virologie [Antananarivo, Madagascar] (IPM), Institut Pasteur de Madagascar, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), National Institutes of Health [Bethesda] (NIH), Laboratory for human evolutionary and Ecological studies, University of São Paulo (USP), and This work was supported by the Cooperative Agreement Number, NU51IP000812, funded by the Centers for Disease Control and Prevention [JG, JMH, NHR] and by the Office of Pandemics and Emerging Threats, Office of Global Affairs, US Department of Health and Human Services [WJA].
- Subjects
Pulmonary and Respiratory Medicine ,match ,Health Planning Guidelines ,Epidemiology ,Influenza vaccine ,030231 tropical medicine ,Population ,Biology ,World Health Organization ,Haemagglutination inhibition ,Influenza immunization ,03 medical and health sciences ,0302 clinical medicine ,Vaccine strain ,Influenza, Human ,timing ,Madagascar ,Humans ,030212 general & internal medicine ,education ,ComputingMilieux_MISCELLANEOUS ,education.field_of_study ,Immunization Programs ,seasonality ,Public Health, Environmental and Occupational Health ,Tropics ,Original Articles ,Hemagglutination Inhibition Tests ,vaccination ,Virology ,3. Good health ,Vaccination ,Infectious Diseases ,Influenza A virus ,Influenza Vaccines ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,Human mortality from H5N1 ,Original Article ,[SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ,Seasons ,[SDV.IMM.VAC]Life Sciences [q-bio]/Immunology/Vaccinology ,influenza - Abstract
SummaryBackground Influenza immunization still poses a critical challenge globally and specifically for tropical regions due to their complex influenza circulation pattern. Tropical regions should select the WHO's Northern or Southern hemisphere recommended vaccine composition based on local surveillance. Analyses of influenza immunization effectiveness have neglected to account for the proportion of circulating viruses prevented from causing infection each year. We investigate this question for Madagascar, where influenza vaccines are not widely available. Methods 78 Malagasy influenza strains characterized from 2002 to 2014 were challenged with hypothetical scenarios in which the WHO's Northern and Southern hemisphere recommended vaccine compositions were provided to the population. Match between circulating and vaccine strains was determined by haemagglutination inhibition assays. Strain-specific positive matches were scored assuming 9 months of protection and scenarios incorporated vaccine delays from zero to five months. Results Malagasy influenza strains matched 54% and 44% respectively with the Northern and Southern hemisphere recommended vaccine strains when the vaccine was delivered as soon as available. The matching values further decreased when additional delivery and application delays were considered. Differences between recommended compositions were not statistically significant. Conclusion Our results showed matching with the Northern hemisphere vaccine barely above 50%, even in the more favourable scenario. This suggests that if implemented, routine influenza vaccines would not protect against half of the influenza strains circulating in any epidemic season of Madagascar. We suggest that this limitation in influenza vaccine efficacy deserves greater attention, and should be considered in cost/benefit analyses of national influenza immunization programs. This article is protected by copyright. All rights reserved.
- Published
- 2017
46. Methodology
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Alicia A. Livinski, Joe Ornelas, Asha V. Devereaux, Niranjan Kissoon, Michael D. Christian, and Jeffrey R. Dichter
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Pulmonary and Respiratory Medicine ,education.field_of_study ,medicine.medical_specialty ,Medical education ,Government ,business.industry ,Public health ,education ,Population ,Conflict of interest ,Critical Care and Intensive Care Medicine ,Surgery ,Medicine ,Professional association ,Oversight Committee ,Cardiology and Cardiovascular Medicine ,business ,Working group ,Disaster medicine - Abstract
BACKGROUND Natural disasters, industrial accidents, terrorism attacks, and pandemics all have the capacity to result in large numbers of critically ill or injured patients. This supplement provides suggestions for all those involved in a disaster or pandemic with multiple critically ill patients, including front-line clinicians, hospital administrators, professional societies, and public health or government officials. The field of disaster medicine does not have the required body of evidence needed to undergo a traditional guideline development process. In result, consensus statement-development methodology was used to capture the highest-caliber expert opinion in a structured, scientific approach. METHODS Task Force Executive Committee members identified core topic areas regarding the provision of care to critically ill or injured patients from pandemics or disasters and subsequently assembled an international panel for each identified area. International disaster medicine experts were brought together to identify key questions (in a population, intervention, comparator, outcome [PICO]-based format) within each of the core topic areas. Comprehensive literature searches were then conducted to identify studies upon which evidence-based recommendations could be made. No studies of sufficient quality were identified. Therefore, the panel developed expert opinion-based suggestions that are presented in this supplement using a modified Delphi process. RESULTS A total of 315 suggestions were drafted across all topic groups. After two rounds of a Delphi consensus-development process, 267 suggestions were chosen by the panel to include in the document and published in a total of 12 manuscripts composing the core chapters of this supplement. Draft manuscripts were prepared by the topic editor and members of the working groups for each of the topics, producing a total of 11 papers. Once the preliminary drafts were received, the Executive Committee (Writing Committee) then met to review, edit, and promote alignment of all of the primary drafts of the manuscripts prepared by the topic editors and their groups. The topic editors then revised their manuscripts based on the Executive Committee's edits and comments. The Writing Committee subsequently reviewed the updated drafts and prepared the final manuscripts for submission to the Guidelines Oversight Committee (GOC). The manuscripts subsequently underwent review by the GOC, including external review as well as peer review for the journal publication. The Writing Committee received the feedback from the reviewers and modified the manuscripts as required. CONCLUSIONS Based on a robust and transparent process, this project used rigorous methodology to produce clinically relevant, trustworthy consensus statements, with the aim to provide needed guidance on treatment and procedures for practitioners, hospital administrators, and public health and government officials when addressing the care of critically ill or injured patients in disasters or pandemics.
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- 2014
47. Rapid growth of biomedical research in Peru
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Christopher W. Belter, Fabiola Leon-Velarde, Roger I. Glass, Alicia A. Livinski, and Patricia J. Garcia
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medicine.medical_specialty ,Biomedical Research ,030231 tropical medicine ,MEDLINE ,General Medicine ,purl.org/pe-repo/ocde/ford#3.02.00 [https] ,03 medical and health sciences ,0302 clinical medicine ,biomedical research ,Political science ,Peru ,medicine ,Humans ,030212 general & internal medicine ,Rapid growth ,Intensive care medicine - Abstract
Over the past 20 years, Peru has experienced tremendous growth in biomedical research, evidenced by the number of publications cited in the medical literature. From an in-depth analysis of these publications, we have gained insight into policies and practices that might encourage other countries to reconsider their own investments in research. For the period 1997–2016, we selected all publications from the Web of Science Core Collection Database with at least one Peruvian author or institution, and examined the funding agencies, coauthorship linkages, research topics, and networks of training...
- Published
- 2018
48. The catalytic role of a research university and international partnerships in building research capacity in Peru: A bibliometric analysis
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Alicia A. Livinski, Christopher W. Belter, Patricia J. Garcia, Kristen H. Weymouth, Fabiola León-Velarde, and Roger I. Glass
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0301 basic medicine ,Research design ,Economic growth ,Biomedical Research ,International Cooperation ,RC955-962 ,Awards and Prizes ,Geographical locations ,medical research ,0302 clinical medicine ,Mentorship ,Arctic medicine. Tropical medicine ,Peru ,Medicine and Health Sciences ,media_common ,capacity building ,4. Education ,Publications ,Academies and Institutes ,Capacity building ,Research Assessment ,organization ,Medical research ,writing ,Research Personnel ,publication ,Infectious Diseases ,tuberculosis ,Research Design ,child health ,Science policy ,Public aspects of medicine ,RA1-1270 ,Network Analysis ,purl.org/pe-repo/ocde/ford#3.03.06 [https] ,Research Article ,altitude ,Computer and Information Sciences ,Capacity Building ,Universities ,Science Policy ,media_common.quotation_subject ,030231 tropical medicine ,Research Grants ,Bibliometrics ,Research and Analysis Methods ,malignant neoplasm ,History, 21st Century ,Research Funding ,Article ,mentor ,03 medical and health sciences ,Political science ,Institution ,Humans ,leishmaniasis ,Publishing ,Government ,Health Care Policy ,research ,catalysis ,cysticercosis ,funding ,Public Health, Environmental and Occupational Health ,History, 20th Century ,South America ,Databases, Bibliographic ,Authorship ,infection ,Health Care ,030104 developmental biology ,occupational health ,People and places - Abstract
Objective In Peru, the past three decades have witnessed impressive growth in biomedical research catalyzed from a single research university and its investigators who secured international partnerships and funding. We conducted a bibliometric analysis of publications by Peruvian authors to understand the roots of this growth and the spread of research networks within the country. Methods For 1997–2016, publications from Web of Science with at least one author affiliated with a Peruvian institution were examined by year, author affiliations, funding agencies, co-authorship linkages, and research topics. Results From 1997–2016, the annual number of publications from Peru increased 9-fold from 75 to 672 totaling 6032. Of these, 56% of the articles had co-authors from the US, 13% from the UK, 12% from Brazil, and 10% from Spain. Universidad Peruana Cayetano Heredia (UPCH) was clearly the lead research institution noted on one-third of publications. Of the 20 most published authors, 15 were Peruvians, 14 trained at some point at UPCH, and 13 received advanced training abroad. Plotting co-authorships documented the growth of institutional collaborations, the robust links between investigators and some lineages of mentorship. Conclusions This analysis suggests that international training of Peruvian physician-scientists who built and sustained longstanding international partnerships with funding accelerated quality research on diseases of local importance. The role of a single research university, UPCH, was critical to advance a culture of biomedical research. Increased funding from the Peruvian Government and its Council for Science, Technology and Innovation will be needed to sustain this growth in the future. Middle-income countries might consider the Peruvian experience where long-term research and training partnerships yielded impressive advances to address key health priorities of the country., Author summary One measure of a country’s productivity in biomedical research is through an analysis of the publications in the peer reviewed literature. We have searched the Web of Science database of English language biomedical publications with a Peruvian author to examine the growth in the number of publications over the period 1997–2016, the most productive research institutions in the country, the distribution of foreign coauthors, and the diversity of topics of research. In the past 2 decades, the number of publications has increased 9-fold with the extensive engagement with foreign co-authors and funding, a growing diversity of topics expanding from infectious diseases to the NCDs, and with one third of all publications coming from a single research university. The early overseas training of a group of young Peruvian physician-scientists in the 1960s led them to establish a unique research university, Universidad Peruano Cayetano Heredia that seeded this new direction and engagement in research, and the seeding of researchers to other institutions in the country working on specific research challenges. The Peruvian experience provides a model for other countries seeking to expand their footprint in research while laying out the need for greater investment by the government to secure and expand these gains while retaining outstanding scientists who have been able to identify through research new ways to address the nation’s priority problems in health. The use of bibliometric analyses can provide important insights in the growth of biomedical research in a country providing policy makers with evidence for making decisions on the future funding of research.
- Published
- 2019
49. Infectious diseases citation patterns: mapping the literature 2008–2010
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Alicia A. Livinski and Melissa L. Rethlefsen
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medicine.medical_specialty ,business.industry ,Health Informatics ,Bibliometrics ,Library and Information Sciences ,Communicable Diseases ,Uniform resource locator ,Family medicine ,Papers ,Humans ,Medicine ,Periodicals as Topic ,Citation ,business ,Publication types - Abstract
OBJECTIVES The research identified the publication types and ages most frequently cited in the infectious diseases literature and the most commonly cited journals. METHODS From 2008-2010, 5,056 articles in 5 infectious diseases journals cited 166,650 items. Two random samples were drawn: one (n = 1,060) from the total set of citations and one (n = 1,060) from the citations to journal articles. For each sample citation, publication type and date, age of cited item, and inclusion of uniform resource locator (URL) were collected. For each item in the cited journal articles sample, journal title, publication date, and age of the cited article were collected. Bradford zones were used for further analysis. RESULTS Journal articles (91%, n = 963) made up the bulk of cited items, followed by miscellaneous items (4.6%, n = 49). Dates of publication for cited items ranged from 1933-2010 (mean = 2001, mode = 2007). Over half (50.2%, n = 483) of cited journal articles were published within the previous 5 years. The journal article citations included 358 unique journal titles. DISCUSSION The citations to current and older publications in a range of disciplines, heavy citation of journals, and citation of miscellaneous and government documents revealed the depth and breadth of resources needed for the study of infectious diseases.
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- 2013
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50. Medical Planning and Response for a Nuclear Detonation: A Practical Guide
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Cullen Case, David M. Weinstock, Richard Hatchett, Scott Deitchman, H. Florence Chang, Maria Julia Marinissen, Allen Dobbs, Elizabeth H. Donnelly, Kevin Caspary, Carl Adrianopoli, Robert Henry Jones, Irwin Redlener, Steven A. Adams, C. Norman Coleman, Jessica Wieder, Alison M. Laffan, Susan Gorman, Elleen Kane, Gretchen Michael, Jeffrey Nemhauser, Arthur S. Chang, Steven L. Simon, John F. Koerner, Chad Hrdina, Daniel Dodgen, Ann Norwood, Bert W. Maidment, Rocco Casagrande, John MacKinney, Kevin Yeskey, Eric Toner, Scott V. Nystrom, Alicia A. Livinski, Tammy P. Taylor, Robert C. Whitcomb, J. Jaime Caro, Nelson J. Chao, Kenneth D. Cliffer, John L. Hick, Ronald G. Manning, Murad Raheem, Ann R. Knebel, Marcy Beth Grace, Katherine S. Wallace, Judith L. Bader, Albert L. Wiley, Charles W. Miller, Colleen Martin, Evan G. DeRenzo, Dennis L. Confer, Leon Larson, Kevin Sheehan, Armin Ansari, Brooke Buddemeier, and Paula Murrain-Hill
- Subjects
Engineering ,Health (social science) ,Detonation ,Disaster Planning ,Management, Monitoring, Policy and Law ,Emergency Shelter ,Nuclear warfare ,Forensic engineering ,Humans ,Radiation Injuries ,Radiometry ,Nuclear Warfare ,business.industry ,Communication ,Public Health, Environmental and Occupational Health ,Civil Defense ,International Agencies ,General Medicine ,United States ,Engineering management ,Transportation of Patients ,Population Surveillance ,Preparedness ,Triage ,business ,Disaster planning - Abstract
This article summarizes major points from a newly released guide published online by the Office of the Assistant Secretary for Preparedness and Response (ASPR). The article reviews basic principles about radiation and its measurement, short-term and long-term effects of radiation, and medical countermeasures as well as essential information about how to prepare for and respond to a nuclear detonation. A link is provided to the manual itself, which in turn is heavily referenced for readers who wish to have more detail.
- Published
- 2012
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