992 results on '"Kendall N. Houk"'
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2. Enantioselective Intramolecular Iridium-Catalyzed Cyclopropanation of α-Carbonyl Sulfoxonium Ylides
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Lucas Vidal, Pan-Pan Chen, Eva Nicolas, Andrew Hackett, Craig M. Robertson, Kendall N. Houk, and Christophe Aïssa
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Chemical Sciences ,Organic Chemistry ,Stereoisomerism ,Alkenes ,Physical and Theoretical Chemistry ,Iridium ,Biochemistry ,Catalysis - Abstract
Enantioselective cyclopropanation of α-carbonyl sulfoxonium ylides (SY) has so far been limited to addition/ring closure reactions on electron-poor olefins. Herein, we report the iridium-catalyzed intramolecular cyclopropanation of SY in the presence of a chiral diene in up to 96% yield and 98% enantioselectivity. Moreover, density functional theory calculations suggest that the re face of the olefin preferably attacks an iridium carbene intermediate in an asynchronous concerted step that is independent of the geometry of the olefin.
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- 2022
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3. A Pyridine Dearomatization Approach to the Matrine-Type Lupin Alkaloids
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Jeff K. Kerkovius, Andrea Stegner, Aneta Turlik, Pik Hoi Lam, Kendall N. Houk, and Sarah E. Reisman
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Alkaloids ,Colloid and Surface Chemistry ,Piperidines ,Pyridines ,General Chemistry ,Matrines ,Sophora ,Biochemistry ,Quinolizines ,Catalysis - Abstract
(+)-Matrine and (+)-isomatrine are tetracyclic alkaloids isolated from the plant
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- 2022
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4. ortho-Selective Dearomative [2π + 2σ] Photocycloadditions of Bicyclic Aza-Arenes
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Roman Kleinmans, Subhabrata Dutta, Kristers Ozols, Huiling Shao, Felix Schäfer, Rebecca E. Thielemann, Hok Tsun Chan, Constantin G. Daniliuc, Kendall N. Houk, and Frank Glorius
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Colloid and Surface Chemistry ,General Chemistry ,Biochemistry ,Catalysis - Published
- 2023
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5. Real-time monitoring of reaction stereochemistry through single-molecule observations of chirality-induced spin selectivity
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Chen Yang, Yanwei Li, Shuyao Zhou, Yilin Guo, Chuancheng Jia, Zhirong Liu, Kendall N. Houk, Yonatan Dubi, and Xuefeng Guo
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General Chemical Engineering ,General Chemistry - Published
- 2023
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6. Computationally designed ligands enable tunable borylation of remote C–H bonds in arenes
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Wenju Chang, Yu Chen, Shuo Lu, Hongyun Jiao, Yajun Wang, Tianyu Zheng, Zhuangzhi Shi, Yingbin Han, Yi Lu, Yi Wang, Yi Pan, Jin-Quan Yu, Kendall N. Houk, Fang Liu, and Yong Liang
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General Chemical Engineering ,Biochemistry (medical) ,Materials Chemistry ,Environmental Chemistry ,General Chemistry ,Biochemistry - Published
- 2022
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7. Facile access to fused 2D/3D rings via intermolecular cascade dearomative [2 + 2] cycloaddition/rearrangement reactions of quinolines with alkenes
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Jiajia Ma, Shuming Chen, Peter Bellotti, Tobias Wagener, Constantin Daniliuc, Kendall N. Houk, and Frank Glorius
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Process Chemistry and Technology ,Bioengineering ,Biochemistry ,Catalysis - Abstract
Hybrid fused two-dimensional/three-dimensional (2D/3D) rings are important pharmacophores in drugs owing to their unique structural and physicochemical properties. Preparation of these strained ring systems often requires elaborate synthetic effort and exhibits low efficiency, thus representing a limiting factor in drug discovery. Here, we report two types of energy-transfer-mediated cascade dearomative [2 + 2] cycloaddition/rearrangement reactions of quinoline derivatives with alkenes, which provide a straightforward avenue to 2D/3D pyridine-fused 6−5−4−3- and 6−4−6-membered ring systems. Notably, this energy-transfer-mediated strategy features excellent diastereoselectivity that bypasses the general reactivity and selectivity issues of photochemical [2 + 2] cycloaddition of various other aromatics. Tuning the aza-arene substitutions enabled selective diversion of the iridium photocatalysed energy transfer manifold towards either cyclopropanation or cyclobutane-rearrangement products. Density functional theory calculations revealed a cascade energy transfer scenario to be operative.
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- 2022
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8. Palladium-catalyzed stereospecific C–P coupling toward diverse PN-heterocycles
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Hong Deng, Minyan Wang, Yong Liang, Xiangyang Chen, Tianhang Wang, Jonathan J. Wong, Yue Zhao, Kendall N. Houk, and Zhuangzhi Shi
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General Chemical Engineering ,Biochemistry (medical) ,Materials Chemistry ,Environmental Chemistry ,General Chemistry ,Biochemistry - Published
- 2022
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9. The Aldol‐Tishchenko Reaction of Butanone, Cyclobutanone and a 3‐Pentanone Derived Sulfinylimine and DFT Calculations of the Stereo‐determining Step
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Emma Alcock, Pamela Mackey, Aneta Turlik, Khushi Bhatt, Mark E. Light, Kendall N. Houk, and Gerard P. McGlacken
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Organic Chemistry ,General Chemistry ,Catalysis - Abstract
p class="Abstract"span lang="EN-GB"Herein, we present a highly diastereoselective method to furnish acyclic 3-amino-1,5-diol derivatives using a tandem double-aldol-Tishchenko protocol (italicdr/italicup togt;99:1) using a butanone derived sulfinylimine. In most cases only 1 diastereomer predominates, from a possible 16. The reaction is also regioselective. In addition, the highly challenging cyclobutanone and 3-pentanone derivatives are also amenable to a double-aldol-Tishchenko reaction, although theitalicdr/italicvalues are modest. Despite that, clean single diastereoisomers can be isolated, which should prove very useful in medicinal chemistry and other areas. Detailed DFT calculations support the observed stereoselectivities in all cases, providing a rationale for the excellentitalicdr/italicvalues in the butanone series and the moderate values for the 3-pentanone class.o:p/o:p/span/p.
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- 2023
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10. An Exception to the Carothers Equation Caused by the Accelerated Chain Extension in a Pd/Ag Cocatalyzed Cross Dehydrogenative Coupling Polymerization
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Liwen Xing, Ji-Ren Liu, Xin Hong, Kendall N. Houk, and Christine K. Luscombe
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Colloid and Surface Chemistry ,General Chemistry ,Biochemistry ,Catalysis - Abstract
The Carothers equation is often used to predict the utility of a small molecule reaction in a polymerization. In this study, we present the mechanistic study of Pd/Ag cocatalyzed cross dehydrogenative coupling (CDC) polymerization to synthesize a donor-acceptor (D-A) polymer of 3,3'-dihexyl-2,2'-bithiophene and 2,2',3,3',5,5',6,6'-octafluorobiphenyl, which go counter to the Carothers equation. It is uncovered that the second chain extension cross-coupling proceeds much more efficiently than the first cross-coupling and the homocoupling side reaction (at least 1 order of magnitude faster) leading to unexpectedly low homocoupling defects and high molecular weight polymers. Kinetic analyses show that C-H bond activation is rate-determining in the first cross-coupling but not in the second cross-coupling. Based on DFT calculations, the high cross-coupling rate in the second cross-coupling was ascribed to the strong Pd-thiophene interaction in the Pd-mediated C-H bond activation transition state, which decreases the energy barrier of the Pd-mediated C-H bond activation. These results have implications beyond polymerizations and can be used to ease the synthesis of a wide range of molecules where C-H bond activation may be the limiting factor.
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- 2022
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11. Allylic C(sp3)–H arylation of olefins via ternary catalysis
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Huan-Ming Huang, Peter Bellotti, Pan-Pan Chen, Kendall N. Houk, and Frank Glorius
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- 2022
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12. Pd(II)-Catalyzed Synthesis of Benzocyclobutenes by β-Methylene-Selective C(sp3)–H Arylation with a Transient Directing Group
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Xiangyang Chen, Jonathan L. Wong, Philip A. Provencher, John F. Hoskin, Erik J. Sorensen, Jin-Quan Yu, and Kendall N. Houk
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Ligand ,Chemistry ,Substrate (chemistry) ,General Chemistry ,Biochemistry ,Medicinal chemistry ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Intramolecular force ,Glycine ,Surface modification ,Methylene ,Selectivity - Abstract
Methylene-selective C-H functionalization is a significant hurdle that remains to be addressed in the field of Pd(II) catalysis. We report a Pd(II)-catalyzed synthesis of benzocyclobutenes by methylene-selective C(sp3)-H arylation of ketones. The reaction utilizes glycine as a transient directing group and a 2-pyridone ligand, which may govern the methylene selectivity by making intimate molecular associations with the substrate during concerted metalation-deprotonation. This reaction is shown to be highly selective for intramolecular methylene C(sp3)-H arylation, thus enabling sequential C(sp3)-H functionalization.
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- 2021
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13. Molecular Dynamics Simulations Guide Chimeragenesis and Engineered Control of Chemoselectivity in Diketopiperazine Dimerases
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Vikram V. Shende, Natalia R. Harris, Jacob N. Sanders, Sean A. Newmister, Yogan Khatri, Mohammad Movassaghi, Kendall N. Houk, and David H. Sherman
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General Chemistry ,General Medicine ,Catalysis - Abstract
In the biosynthesis of the tryptophan-linked dimeric diketopiperazines (DKPs), cytochromes P450 selectively couple DKP monomers to generate a variety of intricate and isomeric frameworks. To determine the molecular basis for selectivity of these biocatalysts we obtained a high-resolution crystal structure of selective Csp2-N bond forming dimerase, AspB. Overlay of the AspB structure onto C-C and C-N bond forming homolog NzeB revealed no significant structural variance to explain their divergent chemoselectivities. Molecular dynamics (MD) simulations identified a region of NzeB with increased conformational flexibility relative to AspB, and interchange of this region along with a single active site mutation led to a variant that catalyzes exclusive C-N bond formation. MD simulations also suggest that intermolecular C-C or C-N bond formation results from a change in mechanism, supported experimentally through use of a substrate mimic.
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- 2022
14. Diastereoselective Radical Aminoacylation of Olefins through N-Heterocyclic Carbene Catalysis
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Wen-Deng Liu, Woojin Lee, Hanyu Shu, Chuyu Xiao, Huiwei Xu, Xiangyang Chen, Kendall N. Houk, and Jiannan Zhao
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Colloid and Surface Chemistry ,Aminoacylation ,General Chemistry ,Alkenes ,Biochemistry ,Catalysis - Abstract
There have been significant advancements in radical-mediated reactions through covalent-based organocatalysis. Here, we present the generation of iminyl and amidyl radicals via N-heterocyclic carbene (NHC) catalysis, enabling diastereoselective aminoacylation of trisubstituted alkenes. Different from photoredox catalysis, single electron transfer from the deprotonated Breslow intermediate to
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- 2022
15. Nickel‐Catalyzed Cross‐Redistribution between Hydrosilanes and Silacyclobutanes
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Shaowei Chen, Xiaoqian He, Chenyu Jin, Weilu Zhang, Yuxi Yang, Shanshan Liu, Yu Lan, Kendall N. Houk, and Xiao Shen
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General Chemistry ,General Medicine ,Catalysis - Abstract
Silanes are important in chemistry and material science. The self-redistribution of HSiCl
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- 2022
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16. An enantioselective ambimodal cross-Diels–Alder reaction and applications in synthesis
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Quan Cai, Limin Yang, Meng-Meng Xu, Qi-Tao Lu, Kendall N. Houk, Kui Tan, and Xiangyang Chen
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Process Chemistry and Technology ,Cyclohexadienes ,Enantioselective synthesis ,Bioengineering ,Oxazoline ,Conjugated system ,Biochemistry ,Combinatorial chemistry ,Catalysis ,chemistry.chemical_compound ,chemistry ,Selectivity ,Diels–Alder reaction ,Cope rearrangement - Abstract
Compared with the conventional Diels–Alder reaction, the development of selective cross-Diels–Alder reactions between two different conjugated dienes, especially in a catalytic asymmetric manner, has been neglected. We now report a peri- and enantioselective cross-Diels–Alder reaction of 3-alkoxycarbonyl-2-pyrones with unactivated conjugated dienes catalysed by a copper(II)–bis(oxazoline) complex, leading to formal inverse-electron-demand adducts with high enantioselectivity under mild reaction conditions. Computational studies showed that this reaction proceeds through an ambimodal transition state: post-transition-state bifurcation leads to [2+4] and [4+2] adducts with the same enantioselectivity, followed by a facile Cope rearrangement to provide a single observed thermodynamic [2+4] product. This reaction occurs with a wide variety of cyclopentadienes, fulvenes and cyclohexadienes, providing a highly efficient and enantioselective approach to densely functionalized cis-bicyclic scaffolds. The synthetic value of this reaction is demonstrated by the asymmetric synthesis of two biologically important natural products, artemisinic acid and coronafacic acid. Periselective catalytic asymmetric cross-Diels–Alder reactions between two different conjugated dienes remain underdeveloped. Now, the selectivity challenges are overcome in such a reaction of electron-poor 2-pyrones and unactivated conjugated dienes, and an ambimodal transition state is identified.
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- 2021
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17. Rational design and atroposelective synthesis of N–N axially chiral compounds
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Yixin Lu, Wenrui Zheng, Guang-Jian Mei, Jonathan J. Wong, Anjanay A. Nangia, and Kendall N. Houk
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Atropisomer ,General Chemical Engineering ,Biochemistry (medical) ,Heteroatom ,Rational design ,Enantioselective synthesis ,General Chemistry ,Alkylation ,Biochemistry ,Combinatorial chemistry ,Catalysis ,chemistry.chemical_compound ,chemistry ,Functional group ,Materials Chemistry ,Environmental Chemistry ,Molecule - Abstract
Summary The first catalytic asymmetric synthesis of N–N axially chiral compounds has been accomplished via a quinidine catalyzed N-allylic alkylation reaction. These N–N axially chiral frameworks are a new addition to the families of axially chiral molecules and to the atropisomerism involving heteroatom(s), e.g., N, O, and S. The reaction takes place smoothly under mild conditions and displays excellent functional group tolerance, allowing facile access to a variety of N–N axially chiral 1-aminopyrroles and 3-aminoquinazolinones in high yields and excellent enantioselectivities. DFT calculations have been applied to understand the origin of enantioselectivity and provide guidance for the design of additional molecules of this type. The investigation of N–N axis atropisomerism holds promise for new discoveries in medicinal chemistry and asymmetric catalysis.
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- 2021
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18. Bis(η5-cyclopentadienyl)[μ-(4b,5,5a-η3:9b,10,10a-η3)-2,3,7,8-tetrakis(trimethylsilyl)benzo[3,4]cyclobuta[1,2-b]biphenylene]-syn-dicobalt (Co–Co), a Dinuclear π-Complex of the Linear [3]Phenylene Framework
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Robin Padilla, K. Peter C. Vollhardt, Jonathan J. Wong, and Kendall N. Houk
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Trimethylsilyl ,Organic Chemistry ,chemistry.chemical_element ,Aromaticity ,Biphenylene ,Medicinal chemistry ,Metal ,chemistry.chemical_compound ,chemistry ,Cyclopentadienyl complex ,Phenylene ,visual_art ,visual_art.visual_art_medium ,Cyclobutadiene ,Cobalt - Abstract
The title compound was made by the reaction of the CpCo-complex of 2,3,7,8-tetrakis(trimethylsilyl) linear [3]phenylene, in which the metal coordinates one of the cyclobutadiene rings, with CpCo(C2H4)2. Because of its relative stability, a syn-dicobalt-bound configuration is indicated rather than its anti alternative.
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- 2021
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19. Constructing Saturated Guanidinum Heterocycles by Cycloaddition of N-Amidinyliminium Ions with Indoles
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Kendall N. Houk, Quan Tran, Larry E. Overman, Michael B. Shaghafi, Pan-Pan Chen, and Tyler K. Allred
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chemistry.chemical_compound ,Chemistry ,Organic Chemistry ,Benzothiophene ,Stereoselectivity ,Density functional theory ,Physical and Theoretical Chemistry ,Biochemistry ,Medicinal chemistry ,Cycloaddition ,Ion - Abstract
We report that structurally complex guanidinium heterocycles can be prepared in one step by regio- and stereoselective [4 + 2]-cycloadditions of N-amidinyliminium ions with indoles or benzothiophene. In contrast to reactions of these heterodienes with alkenes, density functional theory (DFT) calculations show that these cycloadditions take place in a concerted asynchronous fashion. The [4 + 2]-cycloaddition of N-amidinyliminium ions (1,3-diaza-1,3-dienes) with indoles and benzothiophene are distinctive, as related [4 + 2]-cycloadditions of N-acyliminium ions (1-oxa-3-aza-1,3-dienes) are apparently unknown.
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- 2021
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20. The Trajectory of the (η 5-Cyclopentadienyl)cobalt-Mediated Cycloisomerization of Ene-Yne-Ene-Type Allyl Propargylic Ethers to Furans: A DFT Appraisal
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Xiangyang Chen, K. Peter C. Vollhardt, Kendall N. Houk, and Jonathan J. Wong
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chemistry.chemical_classification ,Allylic rearrangement ,Double bond ,Chemistry ,Alkene ,Stereochemistry ,Organic Chemistry ,Ether ,Triple bond ,Catalysis ,chemistry.chemical_compound ,Cycloisomerization ,Chemoselectivity ,Ene reaction - Abstract
The mechanisms by which the complexes CpCoL2 (Cp = C5H5; L = CO or CH2=CH2) mediate the cycloisomerizations of α,δ,ω-enynenes containing allylic ether linkages are probed by DFT methods. The outcomes corroborate experimental results and provide energetic and structural details of the trajectories leading to 3-(oxacyclopentyl or cycloalkyl)furans via the intermediacy of isolable CpCo-η 4-dienes. They comprise initial stereoselective complexation of one of the double bonds and the triple bond, rate-determining oxidative coupling to a triplet 16e cobalta-2-cyclopentene, and terminal double bond docking, followed by stereocontrolled insertion to assemble intermediate cis- and trans-fused triplet cobalta-4-cycloheptenes. A common indicator of the energetic facility of the latter is the extent of parallel alignment of the alkene moiety and its target Co–Cα bond. The cobalta-4-cycloheptenes transform further by β-hydride elimination–reductive elimination to furnish CpCo-η 4-dienes, which are sufficiently kinetically protected to allow for their experimental observation. The cascade continues through cobalt-mediated hydride shifts and dissociation of the aromatic furan ring. The findings in silico with respect to the stereo-, regio-, and chemoselectivity are in consonance with those obtained in vitro.
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- 2021
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21. Ambiphilic Reactivity of Vinyl Pd-Oxyallyl for Expeditious Construction of Highly Functionalized Cyclooctanoids
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Kendall N. Houk, Weipeng Chen, Xiangyang Chen, Wusheng Guo, Teng Liu, Pengchen Ma, Robert H Lavroff, and Linhong Zuo
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Nucleophile ,Chemistry ,Organic Chemistry ,Electrophile ,Reactivity (chemistry) ,Physical and Theoretical Chemistry ,Biochemistry ,Combinatorial chemistry ,Catalysis - Abstract
We report the catalytic generation of a vinyl Pd-oxyallyl that dimerizes regiospecifically to form highly functionalized nonbridged cyclooctanoids. Such compounds are otherwise synthetically challenging, but highly useful in synthesis. This vinyl Pd-oxyallyl species demonstrates both electrophilic and nucleophilic properties. DFT calculations elucidate the mechanism and the origins of the chemoselective cyclooctanoid formation.
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- 2021
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22. Unveiling the full reaction path of the Suzuki–Miyaura cross-coupling in a single-molecule junction
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Zhirong Liu, Chenxi Lu, Yu Li, Shuyao Zhou, Kendall N. Houk, Chen Yang, Fanyang Mo, Yanwei Li, Lei Zhang, Jinlong Yang, Xingxing Li, Xuefeng Guo, and Yang Yang
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Reaction mechanism ,Materials science ,Biomedical Engineering ,Bioengineering ,Condensed Matter Physics ,Oxidative addition ,Atomic and Molecular Physics, and Optics ,Reductive elimination ,Catalysis ,Molecular engineering ,Transmetalation ,Catalytic cycle ,Chemical physics ,Molecule ,General Materials Science ,Electrical and Electronic Engineering - Abstract
Conventional analytic techniques that measure ensemble averages and static disorder provide essential knowledge of the reaction mechanisms of organic and organometallic reactions. However, single-molecule junctions enable the in situ, label-free and non-destructive sensing of molecular reaction processes at the single-event level with an excellent temporal resolution. Here we deciphered the mechanism of Pd-catalysed Suzuki-Miyaura coupling by means of a high-resolution single-molecule platform. Through molecular engineering, we covalently integrated a single molecule Pd catalyst into nanogapped graphene point electrodes. We detected sequential electrical signals that originated from oxidative addition/ligand exchange, pretransmetallation, transmetallation and reductive elimination in a periodic pattern. Our analysis shows that the transmetallation is the rate-determining step of the catalytic cycle and clarifies the controversial transmetallation mechanism. Furthermore, we determined the kinetic and thermodynamic constants of each elementary step and the overall catalytic timescale of this Suzuki-Miyaura coupling. Our work establishes the single-molecule platform as a detection technology for catalytic organochemistry that can monitor transition-metal-catalysed reactions in real time.
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- 2021
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23. High Site Selectivity in Electrophilic Aromatic Substitutions: Mechanism of C–H Thianthrenation
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Tobias Ritter, Fabio Juliá, Xiao-Song Xue, Qianzhen Shao, Javier Mateos, Kendall N. Houk, Meng Duan, Chenxi Lu, Matthew B. Plutschack, and Florian Berger
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Aryl ,Halogenation ,Regioselectivity ,General Chemistry ,Biochemistry ,Borylation ,Combinatorial chemistry ,Catalysis ,Article ,Dication ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,chemistry ,Electrophile ,Selectivity ,Thianthrene - Abstract
The introduction of thianthrene as a linchpin has proven to be a versatile strategy for the C-H functionalization of aromatic compounds, featuring a broad scope and fast diversification. The synthesis of aryl thianthrenium salts has displayed an unusually high para regioselectivity, notably superior to those observed in halogenation or borylation reactions for various substrates. We report an experimental and computational study on the mechanism of aromatic C-H thianthrenation reactions, with an emphasis on the elucidation of the reactive species and the nature of the exquisite site selectivity. Mechanisms involving a direct attack of arene to the isolated O-trifluoracetylthianthrene S-oxide (TT+-TFA) or to the thianthrene dication (TT2+) via electron transfer under acidic conditions are identified. A reversible interconversion of the different Wheland-type intermediates before a subsequent, irreversible deprotonation is proposed to be responsible for the exceptional para selectivity of the reaction.
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- 2021
24. Probing Catalyst Speciation in Pd-MPAAM-Catalyzed Enantioselective C(sp3)–H Arylation: Catalyst Improvement via Destabilization of Off-Cycle Species
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Katherine L. Bay, Wei Hao, Jin-Quan Yu, Zhe Zhuang, Ilia A. Guzei, David E. Hill, Michael M. Aristov, Daniel S. King, Kendall N. Houk, R. Erik Plata, Donna G. Blackmond, John F. Berry, and Caleb F. Harris
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Chemistry ,Genetic algorithm ,Enantioselective synthesis ,General Chemistry ,Combinatorial chemistry ,Catalysis - Published
- 2021
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25. Unusual Enantiodivergence in Chiral Brønsted Acid‐Catalyzed Asymmetric Allylation with β‐Alkenyl Allylic Boronates
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Shang Gao, Meng Duan, Laura R. Andreola, Peiyuan Yu, Steven E. Wheeler, Kendall N. Houk, and Ming Chen
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Aldehydes ,Alcohols ,Stereoisomerism ,General Chemistry ,General Medicine ,Article ,Catalysis - Abstract
We report herein a rare example of enantiodivergent aldehyde addition with β-alkenyl allylic boronates via chiral Brønsted acid catalysis. 2,6-Di-9-anthracenyl-substituted chiral phosphoric acid-catalyzed asymmetric allylation using β-vinyl substituted allylic boronate gave alcohols with R absolute configuration. The sense of asymmetric induction of the catalyst in these reactions is opposite to those in prior reports. Moreover, in the presence of the same acid catalyst, the reactions with β-2-propenyl substituted allylic boronate generated homoallylic alcohol products with S absolute configuration. Unusual substrate-catalyst C-H⋅⋅⋅π interactions in the favoured reaction transition state were identified as the origins of observed enantiodivergence through DFT computational studies.
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- 2022
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26. Nonenzymatic Stereoselective S-Glycosylation of Polypeptides and Proteins
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Xia Zhang, Kendall N. Houk, Rong Shi, Shiqian Qi, Dawen Niu, Jin-Ge Cao, Li Zhou, Xiaoling Shu, Ga Young Lee, Li-Fan Deng, Shi-Yang Xu, Haiyan Ren, Yike Zou, Lunzhi Dai, Li-Qiang Wan, and Yanqiu Gong
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Reaction mechanism ,animal structures ,Glycosylation ,Chemistry ,Stereochemistry ,Radical ,macromolecular substances ,General Chemistry ,Biochemistry ,Catalysis ,carbohydrates (lipids) ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Glycation ,Functional group ,lipids (amino acids, peptides, and proteins) ,Stereoselectivity ,Glycosyl ,Cysteine - Abstract
Here we report a nonenzymatic glycosylation reaction that builds axial S-glycosidic bonds under biorelevant conditions. This strategy is enabled by the design and use of allyl glycosyl sulfones as precursors to glycosyl radicals and exploits the exceptional functional group tolerance of radical processes. Our method introduces a variety of unprotected glycosyl units to the cysteine residues of peptides in a highly selective fashion. Through developing the second-generation protocol, we applied our method in the direct glycosylation of complex polypeptides and proteins. Computational studies were performed to elucidate the reaction mechanism.
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- 2021
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27. Cleaving arene rings for acyclic alkenylnitrile synthesis
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Xiao-Song Xue, Yachong Wang, Hao Wu, Hui Tan, Guisheng Zhang, Song Song, Xu Qiu, Yueqian Sang, Xiaohui Zhang, Xiaoyang Wang, Zixi Yan, Zengrui Cheng, Ning Jiao, and Kendall N. Houk
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chemistry.chemical_compound ,Multidisciplinary ,Chemistry ,Aryl ,Molecule ,Aromaticity ,Homogeneous catalysis ,Ring (chemistry) ,Combinatorial chemistry ,Chemical synthesis ,Bond cleavage ,Catalysis - Abstract
Synthetic chemistry is built around the formation of carbon–carbon bonds. However, the development of methods for selective carbon–carbon bond cleavage is a largely unmet challenge1–6. Such methods will have promising applications in synthesis, coal liquefaction, petroleum cracking, polymer degradation and biomass conversion. For example, aromatic rings are ubiquitous skeletal features in inert chemical feedstocks, but are inert to many reaction conditions owing to their aromaticity and low polarity. Over the past century, only a few methods under harsh conditions have achieved direct arene-ring modifications involving the cleavage of inert aromatic carbon–carbon bonds7,8, and arene-ring-cleavage reactions using stoichiometric transition-metal complexes or enzymes in bacteria are still limited9–11. Here we report a copper-catalysed selective arene-ring-opening reaction strategy. Our aerobic oxidative copper catalyst converts anilines, arylboronic acids, aryl azides, aryl halides, aryl triflates, aryl trimethylsiloxanes, aryl hydroxamic acids and aryl diazonium salts into alkenyl nitriles through selective carbon–carbon bond cleavage of arene rings. This chemistry was applied to the modification of polycyclic aromatics and the preparation of industrially important hexamethylenediamine and adipic acid derivatives. Several examples of the late-stage modification of complex molecules and fused ring compounds further support the potential broad utility of this methodology. Common aromatic rings, such as anilines, arylboronic acids and aryl halides, can be opened up and converted to alkenyl nitriles through carbon–carbon bond cleavage using a copper catalyst.
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- 2021
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28. Cycloaddition Cascades of Strained Alkynes and Oxadiazinones
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Kendall N. Houk, Evan R. Darzi, Melissa Ramirez, Neil K. Garg, and Joyann S Donaldson
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arynes ,Pericyclic reaction ,polycyclic aromatic hydrocarbons ,Organic Chemistry ,New materials ,General Medicine ,General Chemistry ,Aryne ,Article ,Catalysis ,Cycloaddition ,cycloadditions ,Pentacene ,chemistry.chemical_compound ,Tetracene ,chemistry ,Cascade ,Computational chemistry ,cyclic alkynes ,Chemical Sciences ,Density functional theory ,density functional theory - Abstract
We report a computational and experimental study of the reaction of oxadiazinones and strained alkynes to give polycyclic aromatic hydrocarbons (PAHs). The reaction proceeds by way of a pericyclic reaction cascade and leads to the formation of four new carbon-carbon bonds. Using M06-2X DFT calculations, we interrogate several mechanistic aspects of the reaction, such as why the use of non-aromatic strained alkynes can be used to access unsymmetrical PAHs, whereas the use of arynes in the methodology leads to symmetrical PAHs. In addition, experimental studies enable the rapid synthesis of new PAHs, including tetracene and pentacene scaffolds. These studies not only provide fundamental insight regarding the aforementioned cycloaddition cascades and synthetic access to PAH scaffolds, but are also expected to enable the synthesis of new materials.
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- 2021
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29. Computational Exploration of How Enzyme XimE Converts Natural S-Epoxide to Pyran and R-Epoxide to Furan
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Bei-Bei He, Yi-Lei Zhao, Chu-Chu Jiang, Min-Juan Xu, Rosalinda L. Zhao, and Kendall N. Houk
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Physics ,chemistry.chemical_classification ,chemistry.chemical_compound ,Enzyme ,chemistry ,Pyran ,Furan ,Epoxide ,Organic chemistry ,General Chemistry ,Catalysis - Published
- 2021
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30. Deciphering Reactivity and Selectivity Patterns in Aliphatic C–H Bond Oxygenation of Cyclopentane and Cyclohexane Derivatives
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Yanmin Yu, Massimo Bietti, Fengjiao Liu, Teo Martin, Meng Duan, Kendall N. Houk, Michela Salamone, and Marco Galeotti
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Steric effects ,Trifluoromethyl ,Molecular Structure ,010405 organic chemistry ,Bond strength ,Organic Chemistry ,Substituent ,Hydrogen Bonding ,Cyclopentanes ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,Settore CHIM/06 ,0104 chemical sciences ,Kinetics ,chemistry.chemical_compound ,Dioxirane ,chemistry ,Cyclohexanes ,Cyclopentane ,Isopropyl - Abstract
A kinetic, product, and computational study on the reactions of the cumyloxyl radical with monosubstituted cyclopentanes and cyclohexanes has been carried out. HAT rates, site-selectivities for C-H bond oxidation, and DFT computations provide quantitative information and theoretical models to explain the observed patterns. Cyclopentanes functionalize predominantly at C-1, and tertiary C-H bond activation barriers decrease on going from methyl- and tert-butylcyclopentane to phenylcyclopentane, in line with the computed C-H BDEs. With cyclohexanes, the relative importance of HAT from C-1 decreases on going from methyl- and phenylcyclohexane to ethyl-, isopropyl-, and tert-butylcyclohexane. Deactivation is also observed at C-2 with site-selectivity that progressively shifts to C-3 and C-4 with increasing substituent steric bulk. The site-selectivities observed in the corresponding oxidations promoted by ethyl(trifluoromethyl)dioxirane support this mechanistic picture. Comparison of these results with those obtained previously for C-H bond azidation and functionalizations promoted by the PINO radical of phenyl and tert-butylcyclohexane, together with new calculations, provides a mechanistic framework for understanding C-H bond functionalization of cycloalkanes. The nature of the HAT reagent, C-H bond strengths, and torsional effects are important determinants of site-selectivity, with the latter effects that play a major role in the reactions of oxygen-centered HAT reagents with monosubstituted cyclohexanes.
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- 2021
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31. Origins of Endo Selectivity in Diels–Alder Reactions of Cyclic Allene Dienophiles
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Neil K. Garg, Kendall N. Houk, Dennis Svatunek, Fang Liu, and Melissa Ramirez
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Allylic rearrangement ,Diene ,Cycloaddition Reaction ,Molecular Structure ,010405 organic chemistry ,Stereochemistry ,Allene ,Stereoisomerism ,General Chemistry ,General Medicine ,010402 general chemistry ,01 natural sciences ,Catalysis ,Article ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Furan ,Wittig reaction ,Cyclohexenes ,Molecular orbital ,Selectivity ,HOMO/LUMO - Abstract
Strained cyclic allenes, first discovered in 1966 by Wittig and coworkers, have recently emerged as valuable synthetic building blocks. Previous experimental investigations, and computations reported here, demonstrate that the Diels–Alder reactions of furans and pyrroles to 1,2-cyclohexadiene and oxa and aza heterocyclic analogs proceed with endo selectivity. This unprecedented endo selectivity gives the adduct with the allylic saturated carbon of the cyclic allene endo to the diene carbons. The selectivity is very general and useful in synthetic applications. Our computational study establishes the origins of this endo selectivity. We analyze the helical frontier molecular orbitals of strained cyclic allenes and show how secondary orbital and electrostatic effects influence stereoselectivity. The LUMO of carbon-3 of the allene (C-3 is not involved in primary orbital interactions) interacts in a stabilizing fashion with the HOMO of the diene in such a way that the carbon of the cyclic allene attached to C-1 favors the endo position in the transition state. The furan LUMO, allene HOMO interaction reinforces this preference. These mechanistic studies are expected to prompt the further use of long-avoided strained cyclic allenes in chemical synthesis.
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- 2021
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32. Post-Transition State Bifurcation in Iron-Catalyzed Arene Aminations
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Bo Li, Yanfeng Dang, Yuli Li, and Kendall N. Houk
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Crystallography ,Chemistry ,Iron catalyzed ,General Chemistry ,State (functional analysis) ,Catalysis ,Bifurcation - Published
- 2021
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33. An Asymmetric SN2 Dynamic Kinetic Resolution
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Nomaan M. Rezayee, Gabriel J. Reyes-Rodríguez, Johannes N. Lamhauge, Kendall N. Houk, Chenxi Lu, Sif T. Linde, Karl Anker Jørgensen, and Valdemar J. Enemærke
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Substitution reaction ,Chemistry ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,law.invention ,Kinetic resolution ,Stereocenter ,Colloid and Surface Chemistry ,Nucleophile ,law ,Computational chemistry ,SN2 reaction ,Racemic mixture ,Stereoselectivity ,Walden inversion - Abstract
The SN2 reaction exhibits the classic Walden inversion, indicative of the stereospecific backside attack of the nucleophile on the stereogenic center. Observation of the inversion of the stereocenter provides evidence for an SN2-type displacement. However, this maxim is contingent on substitution proceeding on a discrete stereocenter. Here we report an SN2 reaction that leads to enantioenrichment of product despite starting from a racemic mixture of starting material. The enantioconvergent reaction proceeds through a dynamic Walden cycle, involving an equilibrating mixture of enantiomers, initiated by a chiral aminocatalyst and terminated by a stereoselective SN2 reaction at a tertiary carbon to provide a quaternary carbon stereocenter. A combination of computational, kinetic, and empirical studies elucidates the multifaceted role of the chiral organocatalyst to provide a model example of the Curtin-Hammett principle. These examples challenge the notion of enantioenriched products exclusively arising from predefined stereocenters when operating through an SN2 mechanism. Based on these principles, examples are included to highlight the generality of the mechanism. We anticipate the asymmetric SN2 dynamic kinetic resolution to be used for a variety of future reactions.
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- 2021
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34. Computational Exploration of the Mechanism of Critical Steps in the Biomimetic Synthesis of Preuisolactone A, and Discovery of New Ambimodal (5 + 2)/(4 + 2) Cycloadditions
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Xiao-Song Xue, Kendall N. Houk, Alexander J. E. Novak, Shuming Chen, Cooper S. Jamieson, Dirk Trauner, and Hong Zhang
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Cycloaddition Reaction ,Chemistry ,Quinones ,General Chemistry ,Ring (chemistry) ,Biochemistry ,Catalysis ,Cycloaddition ,Hydroquinones ,Adduct ,Benzilic acid rearrangement ,Bicarbonates ,Lactones ,Molecular dynamics ,Colloid and Surface Chemistry ,Deprotonation ,Biomimetics ,Computational chemistry ,Biomimetic synthesis ,Density functional theory ,Sesquiterpenes - Abstract
Computational studies with ωB97X-D density functional theory of the mechanisms of the steps in Trauner's biomimetic synthesis of preuisolactone A have elaborated and refined mechanisms of several unique processes. An ambimodal transition state has been identified for the cycloaddition between an o-quinone and a hydroxy-o-quinone; this leads to both (5 + 2) (with H shift) and (4 + 2) cycloaddition products, which can in principle interconvert via α-ketol rearrangements. The origins of periselectivity of this ambimodal cycloaddition have been investigated computationally with molecular dynamics simulations and tested further by an experimental study. In the presence of bicarbonate ions, the deprotonated hydroxy-o-quinone leads to only the (5 + 2) cycloaddition adduct. A new mechanism for a benzilic acid rearrangement resulting in ring contraction is proposed.
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- 2021
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35. Dramatic Effect of γ-Heteroatom Dienolate Substituents on Counterion Assisted Asymmetric Anionic Amino-Cope Reaction Cascades
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Jason S. Fell, Jianhua Bao, Kendall N. Houk, Pradipta Das, Munaum H. Qureshi, Jon T. Njardarson, and Michael D. Delost
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chemistry.chemical_classification ,Heteroatom ,chemistry.chemical_element ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Ion ,Colloid and Surface Chemistry ,chemistry ,Computational chemistry ,Lithium ,Counterion ,Cope reaction - Abstract
We report a dramatic effect on product outcomes of the lithium ion enabled amino-Cope-like anionic asymmetric cascade when different γ-dienolate heteroatom substituents are employed. For dienolates with azide, thiomethyl, and trifluoromethylthiol substituents, a Mannich/amino-Cope/cyclization cascade ensues to form chiral cyclohexenone products with two new stereocenters in an
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- 2021
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36. Computational Exploration of Ambiphilic Reactivity of Azides and Sustmann’s Paradigmatic Parabola
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Pengchen Ma, Xue He, Kendall N. Houk, Fang Liu, Dennis Svatunek, and Pan-Pan Chen
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Azides ,Cycloaddition Reaction ,010405 organic chemistry ,Chemistry ,Static Electricity ,Organic Chemistry ,Parabola ,010402 general chemistry ,01 natural sciences ,Article ,Cycloaddition ,0104 chemical sciences ,Physical Phenomena ,Specific orbital energy ,chemistry.chemical_compound ,Chemical physics ,Distortion ,Phenyl azide ,Reactivity (chemistry) ,Bioorthogonal chemistry ,Ionization energy - Abstract
We examine the theoretical underpinnings of the seminal discoveries by Reiner Sustmann about the ambiphilic nature of Huisgen's phenyl azide cycloadditions. Density functional calculations with ωB97X-D and B2PLYP-D3 reproduce the experimental data and provide insights into ambiphilic control of reactivity. Distortion/interaction-activation strain and energy decomposition analyses show why Sustmann's use of dipolarophile ionization potential is such a powerful predictor of reactivity. We add to Sustmann's data set several modern distortion-accelerated dipolarophiles used in bioorthogonal chemistry to show how these fit into the orbital energy criteria that are often used to understand cycloaddition reactivity. We show why such a simple indicator of reactivity is a powerful predictor of reaction rates that are actually controlled by a combination of distortion energies, charge transfer, closed-shell repulsion, polarization, and electrostatic effects.
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- 2021
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37. Sequential C–F bond functionalizations of trifluoroacetamides and acetates via spin-center shifts
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Chang-Ling Wang, You-Jie Yu, Chen Chen, Yi-Feng Wang, Feng-Lian Zhang, Tian-Yu Peng, Kendall N. Houk, and Jie Cheng
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Reaction mechanism ,chemistry.chemical_compound ,Multidisciplinary ,Trifluoromethyl ,chemistry ,Radical ,Fluorine ,Molecule ,Surface modification ,chemistry.chemical_element ,Chemoselectivity ,Combinatorial chemistry ,Bond cleavage - Abstract
Sequentially snipping off fluorines It is often useful in pharmaceutical or agrochemical research to modify the properties of carbon compounds by appending one or more fluorine atoms. However, the methods used to prepare mono-, di-, or trifluorocarbon centers tend to differ from each other in inconvenient ways. Yu et al. developed a radical reaction that can successively remove one or two fluorine atoms from trifluoromethyl groups adjacent to amides or esters. The mechanism relies on a spin-center shift after attack at the carbonyl oxygen by a boryl radical. Science , this issue p. 1232
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- 2021
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38. Taming Radical Pairs in the Crystalline Solid State: Discovery and Total Synthesis of Psychotriadine
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Neil K. Garg, Ieva Liepuoniute, Miguel A. Garcia-Garibay, Vince M. Hipwell, Saeed I. Khan, Kendall N. Houk, J. Logan Bachman, and Jordan J. Dotson
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Indoles ,Free Radicals ,Light ,Chemistry ,Stereochemistry ,Molecular Conformation ,Total synthesis ,Stereoisomerism ,General Chemistry ,010402 general chemistry ,Crystal engineering ,01 natural sciences ,Biochemistry ,Carbon ,Article ,Catalysis ,0104 chemical sciences ,Stereocenter ,Alkaloids ,Colloid and Surface Chemistry ,Piperidines ,Molecule - Abstract
Solid-state photodecarbonylation is an attractive but underutilized methodology to forge hindered C−C bonds in complex molecules. This study discloses the use of this reaction to assemble the vicinal quaternary stereocenter motif present in bis(cyclotryptamine) alkaloids. Our strategy was enabled by experimental and computational investigations of the role of substrate conformation on the success or failure of the solid-state photodecarbonylation reaction. This informed a crystal engineering strategy to optimize the key step of the total synthesis. Ultimately, this endeavor culminated in the successful synthesis of the bis(cyclotryptamine) alkaloid “psychotriadine,” which features the elusive piperidinoindoline framework. Psychotriadine, a previously unknown compound, was identified in the extracts of the flower Psychotria colorata, suggesting it is a naturally occurring metabolite.
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- 2021
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39. How the Lewis Base F-Catalyzes the 1,3-Dipolar Cycloaddition between Carbon Dioxide and Nitrilimines
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Kendall N. Houk, Dennis Svatunek, Thomas Hansen, Trevor A. Hamlin, Theoretical Chemistry, Chemistry and Pharmaceutical Sciences, and AIMMS
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010405 organic chemistry ,Nitrilimine ,Organic Chemistry ,Note ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,Cycloaddition ,0104 chemical sciences ,Catalysis ,chemistry.chemical_compound ,Medicinal and Biomolecular Chemistry ,chemistry ,Nucleophile ,1,3-Dipolar cycloaddition ,Carbon dioxide ,SDG 13 - Climate Action ,Lewis acids and bases ,SDG 6 - Clean Water and Sanitation - Abstract
The mechanism of the Lewis base F- catalyzed 1,3-dipolar cycloaddition between CO2 and nitrilimines is interrogated using DFT calculations. F- activates the nitrilimine, not CO2 as proposed in the literature, and imparts a significant rate enhancement for the cycloaddition. The origin of this catalysis is in the strength of the primary orbital interactions between the reactants. The Lewis base activated nitrilimine-F- has high-lying filled FMOs. The smaller FMO-LUMO gap promotes a rapid nucleophilic attack and overall cycloaddition with CO2.
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- 2021
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40. Metal‐Free Directed C−H Borylation of Pyrroles
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Xiangyang Chen, Lei Wu, Yue Zhao, Yong Liang, Zhuangzhi Shi, Kendall N. Houk, Zheng-Jun Wang, and Jonathan J. Wong
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Steric effects ,010405 organic chemistry ,Chemistry ,Site selectivity ,General Chemistry ,General Medicine ,010402 general chemistry ,01 natural sciences ,Environmentally friendly ,Combinatorial chemistry ,Borylation ,Catalysis ,0104 chemical sciences ,Metal free ,Electronic effect ,Selectivity - Abstract
Robust strategies to enable the rapid construction of complex organoboronates in selective, practical, low-cost, and environmentally friendly modes remain conspicuously underdeveloped. Here, we develop a general strategy for the site-selective C-H borylation of pyrroles by using only BBr 3 directed by pivaloyl groups, avoiding the use of any metal. The site-selectivity is generally dominated by chelation and electronic effects, thus forming diverse C2-borylated pyrroles against the steric effect. The formed products can readily engage in downstream transformations, enabling a step-economic process to access drugs such as Lipitor. DFT calculations (𝑤B97X-D) demonstrate the preferred positional selectivity of this reaction.
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- 2021
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41. Cyclization by C(sp3)–H Arylation with a Transient Directing Group for the Diastereoselective Preparation of Indanes
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Erik J. Sorensen, Philip A. Provencher, John F. Hoskin, Katherine L. Bay, Kendall N. Houk, and Jin-Quan Yu
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010405 organic chemistry ,Indane ,chemistry.chemical_element ,General Chemistry ,Trigonal crystal system ,010402 general chemistry ,01 natural sciences ,Oxidative addition ,Medicinal chemistry ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Group (periodic table) ,Transient (oscillation) ,Palladium - Abstract
We report Pd(II)-catalyzed cyclative C(sp3)–H arylation of ketones with a transient directing group (TDG). Based on calculations, the oxidative addition step implicates a highly strained trigonal b...
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- 2021
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42. Palladium‐Catalyzed Silacyclization of (Hetero)Arenes with a Tetrasilane Reagent through Twofold C−H Activation
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Yue Zhao, Dingyi Wang, Mingjie Li, Xiangyang Chen, Kendall N. Houk, Yong Liang, Zhuangzhi Shi, and Minyan Wang
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Silylation ,Silicon ,010405 organic chemistry ,Aryl ,chemistry.chemical_element ,Halide ,General Medicine ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Combinatorial chemistry ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Reagent ,Density functional theory ,Palladium - Abstract
The use of an operationally convenient and stable silicon reagent (octamethyl-1,4-dioxacyclohexasilane, ODCS) for the selective silacyclization of (hetero)arenes via twofold C-H activation is reported. This method is compatible with N-containing heteroarenes such as indoles and carbazoles of varying complexity. The ODCS reagent can also be utilized for silacyclization of other types of substrates including tertiary phosphines and aryl halides, rendering a diverse transformation. A series of mechanistic experiments and density functional theory (DFT) calculations were used to investigate the preferred pathway for this twofold C-H activation process.
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- 2021
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43. Anthracene–Triphenylamine-Based Platinum(II) Metallacages as Synthetic Light-Harvesting Assembly
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Peter J. Stang, Pravas Deria, Guigen Li, Jian-Hong Tang, Jierui Yu, Yanrong Li, Ruidong Ni, Kendall N. Houk, Ga Young Lee, and Sreehari Surendran Rajasree
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Anthracene ,Quenching (fluorescence) ,Quantum yield ,General Chemistry ,Chromophore ,010402 general chemistry ,Triphenylamine ,Photochemistry ,Trigonal prismatic molecular geometry ,01 natural sciences ,Biochemistry ,Fluorescence ,Acceptor ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,chemistry - Abstract
Two trigonal prismatic metallacages 1 and 2 bearing triphenylamine and anthracene moieties are designed and synthesized to fabricate artificial light-harvesting systems (LHSs). These two cages are prepared via the coordination-driven self-assembly of two anthracene-triphenylamine-based tripyridyl ligand 3, three dicarboxylates, and six 90° Pt(II) acceptors. The design of the anthracene-triphenylamine chromophore makes possible the tunable excited-state property (like the emissive transition energy and lifetime) as a function of the solvent polarity, temperature, and concentration. The synergistic photophysical footprint of these metallacages, defined by their high absorptivity and emission quantum yield (QY) relative to the free ligand 3, signifies them as a superior light sensitizer component in an LHS. In the presence of the fluorescent dye Nile Red (NR) as an energy acceptor, the metallacages display efficient (>93%) excited energy transfer to NR through an apparent static quenching mechanism in viscous dimethyl sulfoxide solvent.
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- 2021
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44. Fungal Dioxygenase AsqJ Is Promiscuous and Bimodal: Substrate‐Directed Formation of Quinolones versus Quinazolinones
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Manuel Einsiedler, Cooper S. Jamieson, Mark A. Maskeri, Kendall N. Houk, and Tobias A. M. Gulder
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FeII/α-ketoglutarate dependent dioxygenases ,biocatalysis ,Stereochemistry ,natural products ,Substituent ,Quinolones ,010402 general chemistry ,01 natural sciences ,Catalysis ,Aspergillus nidulans ,Dioxygenases ,chemistry.chemical_compound ,Biosynthesis ,Dioxygenase ,Reactivity (chemistry) ,enzyme mechanism ,Research Articles ,Quinazolinones ,biology ,Molecular Structure ,010405 organic chemistry ,Organic Chemistry ,Substrate (chemistry) ,General Medicine ,General Chemistry ,biology.organism_classification ,0104 chemical sciences ,Biosynthesis | Hot Paper ,chemistry ,Biocatalysis ,Chemical Sciences ,Fe-II/alpha-ketoglutarate dependent dioxygenases ,biosynthesis ,Research Article - Abstract
Previous studies showed that the FeII/α‐ketoglutarate dependent dioxygenase AsqJ induces a skeletal rearrangement in viridicatin biosynthesis in Aspergillus nidulans, generating a quinolone scaffold from benzo[1,4]diazepine‐2,5‐dione substrates. We report that AsqJ catalyzes an additional, entirely different reaction, simply by a change in substituent in the benzodiazepinedione substrate. This new mechanism is established by substrate screening, application of functional probes, and computational analysis. AsqJ excises H2CO from the heterocyclic ring structure of suitable benzo[1,4]diazepine‐2,5‐dione substrates to generate quinazolinones. This novel AsqJ catalysis pathway is governed by a single substituent within the complex substrate. This unique substrate‐directed reactivity of AsqJ enables the targeted biocatalytic generation of either quinolones or quinazolinones, two alkaloid frameworks of exceptional biomedical relevance., AsqJ catalyzes a complex rearrangement sequence in quinolone biosynthesis. We show the AsqJ biocatalytic potential to significantly exceed this natural function. An unprecedented reaction pathway leading to quinazolinones is uncovered, functionally and mechanistically characterized in detail, revealing a unique substrate‐dependent product selectivity in enzyme catalysis.
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- 2021
45. Catalytic mechanism and
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Michio, Sato, Shinji, Kishimoto, Mamoru, Yokoyama, Cooper S, Jamieson, Kazuto, Narita, Naoya, Maeda, Kodai, Hara, Hiroshi, Hashimoto, Yuta, Tsunematsu, Kendall N, Houk, Yi, Tang, and Kenji, Watanabe
- Subjects
Article - Abstract
We have previously reported the identification of CghA, a proposed Diels–Alderase responsible for the formation of the bicyclic octalin core of the fungal secondary metabolite Sch210972. Here we show the crystal structure of the CghA–product complex at a resolution of 2.0 Å. Our result provides the second structural determination of eukaryotic Diels–Alderases and adds yet another fold to the family of proteins reported to catalyse [4 + 2] cycloaddition reactions. Site-directed mutagenesis-coupled kinetic characterization and computational analyses allowed us to identify key catalytic residues and propose a possible catalytic mechanism. Most interestingly, we were able to rationally engineer CghA such that the mutant was able to catalyse preferentially the formation of the energetically disfavoured exo adduct. This work expands our knowledge and understanding of the emerging and potentially widespread class of natural enzymes capable of catalysing stereoselective Diels–Alder reactions and paves the way towards developing enzymes potentially useful in various bio/synthetic applications.
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- 2022
46. A concise synthesis of tetrodotoxin
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David B. Konrad, Klaus-Peter Rühmann, Hiroyasu Ando, Belinda E. Hetzler, Nina Strassner, Kendall N. Houk, Bryan S. Matsuura, and Dirk Trauner
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Voltage-Gated Sodium Channel Blockers ,Multidisciplinary ,Cycloaddition Reaction ,Stereoisomerism ,Tetrodotoxin ,Catalysis ,Guanidine ,Ruthenium - Abstract
Tetrodotoxin (TTX) is a neurotoxic natural product that is an indispensable probe in neuroscience, a biosynthetic and ecological enigma, and a celebrated target of synthetic chemistry. Here, we present a stereoselective synthesis of TTX that proceeds in 22 steps from a glucose derivative. The central cyclohexane ring of TTX and its α-tertiary amine moiety were established by the intramolecular 1,3-dipolar cycloaddition of a nitrile oxide, followed by alkynyl addition to the resultant isoxazoline. A ruthenium-catalyzed hydroxylactonization set the stage for the formation of the dioxa-adamantane core. Installation of the guanidine, oxidation of a primary alcohol, and a late-stage epimerization gave a mixture of TTX and anhydro-TTX. This synthetic approach could give ready access to biologically active derivatives.
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- 2022
47. Bioinspired Asymmetric Total Synthesis of Emeriones A–C**
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Sven Jänner, Daniel Isak, Yuli Li, Kendall N. Houk, and Aubry K. Miller
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Cyclization ,Stereoisomerism ,General Medicine ,General Chemistry ,Oxidation-Reduction ,Catalysis - Abstract
We report asymmetric bioinspired total syntheses of the fungal metabolites emeriones A-C via stereoselective oxidations of two bicyclo[4.2.0]octadiene diastereomers. The central bicyclic scaffolds are prepared in an 8π/6π electrocyclization cascade of a stereodefined pentaene, which contains the fully assembled side chains of the emeriones. The anti-aldol side chain is made using a Paterson-aldol addition, and the epoxide of the dioxabicyclo[3.1.0]hexane side chain via ring-closure onto an oxidized acetal. Our work has enabled the structural revision of emerione C, and resulted in the synthesis of a "missing" family member, which we call emerione D. DFT calculations identified two methyl groups that govern torquoselectivity in the 8π/6π cascade.
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- 2022
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48. Computational Chemistry
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Kendall N. Houk and Fang Liu
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- 2022
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49. Die Evolution des Diels‐Alder‐Reaktionsmechanismus seit den 1930er Jahren: Woodward, Houk zusammen mit Woodward und der Einfluss der Computerchemie auf das Verständnis von Cycloadditionen
- Author
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Fang Liu, Jeffrey I. Seeman, Zhongyue Yang, and Kendall N. Houk
- Subjects
Chemistry ,General Medicine - Published
- 2021
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50. Computational Redesign of a PETase for Plastic Biodegradation under Ambient Condition by the GRAPE Strategy
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Yong Liang, Wenbin Du, Shuangyan Tang, Hua Xiang, Xu Han, Kendall N. Houk, Jing Han, Yinglu Cui, Yu’e Tian, Saijun Dong, Yanchun Chen, Weidong Liu, Ruchira Mitra, Chunli Li, Yuxin Qiao, Wangqing Wei, Xin Wang, Quan Chen, Xinyue Liu, Bian Wu, and Haiyan Liu
- Subjects
010405 organic chemistry ,Chemistry ,General Chemistry ,Biochemical engineering ,Biodegradation ,010402 general chemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Thermostability - Abstract
Nature has provided a fantastic array of enzymes that are responsible for essential biochemical functions but not usually suitable for technological applications. Not content with the natural reper...
- Published
- 2021
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