25 results on '"Luana da Silva"'
Search Results
2. Epidemiology and molecular detection of human adenovirus and non-polio enterovirus in fecal samples of children with acute gastroenteritis: A five-year surveillance in northern Brazil.
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Alves JCDS, Teixeira DM, Siqueira JAM, Deus DR, Oliveira DS, Ferreira JL, Lobo PDS, Soares LDS, Tavares FN, and Gabbay YB
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- Humans, Brazil epidemiology, Child, Preschool, Infant, Male, Female, Child, Enterovirus Infections epidemiology, Enterovirus Infections virology, Enterovirus Infections diagnosis, Acute Disease, Adenovirus Infections, Human epidemiology, Adenovirus Infections, Human virology, Phylogeny, Gastroenteritis virology, Gastroenteritis epidemiology, Feces virology, Adenoviruses, Human genetics, Adenoviruses, Human isolation & purification, Adenoviruses, Human classification, Enterovirus genetics, Enterovirus isolation & purification
- Abstract
Acute gastroenteritis (AGE) is a common pediatric infection that remains a significant cause of childhood morbidity and mortality worldwide, especially in low-income regions. Thus, the objective of this study was to detect human adenovirus (HAdV) and non-polio enterovirus (NPEV) in fecal samples from the Gastroenteritis Surveillance Network, and to identify circulating strains by nucleotide sequencing. A total of 801 fecal samples were tested using qPCR/RT-qPCR, and 657 (82.0%) were inoculated into HEp-2C and RD cell lines. The HAdV and NPEV positivity rates obtained using qPCR/RT-qPCR were 31.7% (254/801) and 10.5% (84/801), respectively, with 5.4% (43/801) co-detection. Cytopathic effect was observed in 9.6% (63/657) of patients, 2.7% (18/657) associated with HAdV, and 6.2% (41/657) associated with NPEV after testing by ICC-PCR. A comparison of the two methodologies demonstrated an agreement of 93.5% for EVNP and 64.4% for HAdV. These two viruses were detected throughout the study period, with HAdV positivity rates ranging from 41% in Amapá to 18% in Pará. The NEPV varied from 18% in Pará/Rondônia to 3% in Acre. The most affected age group was over 60 months for both HAdV and NPEV. Samples previously positive for rotavirus and norovirus, which did not show a major difference in the presence or absence of diarrhea, fever, and vomiting, were excluded from the clinical analyses of these two viruses. These viruses circulated over five years, with a few months of absence, mainly during the months corresponding to the waves of SARS-CoV-2 infection in Brazil. Five HAdV species were identified (A, B, C, D, and F), with a greater predominance of HAdV-F41 (56.5%) followed by HAdV-C (15.2%). Three NPEV species (A, B, and C) were detected, with serotypes E14 (19.3%) and CVA-24 (16.1%) being the most prevalent. The present study revealed a high diversity of NPEV and HAdV types circulating in children with AGE symptoms in the northern region of Brazil., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Alves et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2024
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3. Clinical and anthropometric evolution of individuals with cystic fibrosis during COVID-19 pandemic: A 24-month cohort study.
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de Oliveira TJ, Altoé ID, Arpini LDSB, Liberato FMG, Melotti RCNC, Wittmer VL, Duarte H, Barbalho-Moulim MC, and Paro FM
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- Humans, Male, Female, Child, Adolescent, Longitudinal Studies, SARS-CoV-2, Child, Preschool, Anthropometry, Body Weight, Body Height, Exocrine Pancreatic Insufficiency epidemiology, Exocrine Pancreatic Insufficiency etiology, Cohort Studies, Infant, Cystic Fibrosis epidemiology, Cystic Fibrosis complications, Cystic Fibrosis physiopathology, COVID-19 epidemiology, Body Mass Index
- Abstract
Objectives: To analyze the evolution of clinical and anthropometric characteristics of children and adolescents with cystic fibrosis (CF) over 24 months, including the period of the COVID-19 pandemic., Methods: A longitudinal study with data collection from May 2018 to November 2020 in physical and electronic records from a pediatric reference center, including individuals with CF aged up to 18 years., Results: The sample encompassed 72 individuals. Weight (p < 0.01), height (p < 0.01), and body mass index (BMI) (p = 0.043) were higher in 2020 than in 2018. There were no significant changes in BMI-Z (p = 0.977) and in percentiles of weight (p = 0.540), height (p = 0.458), and BMI percentile (p = 0.454) between both periods. Pancreatic insufficiency was observed in 91.7% of patients in 2020, and there were twice as many confirmed cases of diabetes compared to 2018. There was a 9.7% increase in individuals colonized by the oxacillin-sensitive Staphylococcus aureus (OSSA) (p = 0.039) and an 11.1% reduction in non-colonized individuals (p = 0.008)., Conclusion: Although there was an increase in weight, height, and BMI from 2018 to 2020, there were no significant changes in BMI-Z and in percentiles of weight, height, and BMI percentile, suggesting that the anthropometric aspects of nutritional status did not change in this period of 2 years. Moreover, there was an increase in the prevalence of individuals colonized by OSSA and a reduction in the prevalence of individuals non-colonized with any bacteria., (© 2024 Wiley Periodicals LLC.)
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- 2024
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4. New Chalcogen-Functionalized Naphthoquinones: Design, Synthesis, and Evaluation, In Vitro and In Silico , against Squamous Cell Carcinoma.
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Gomes LDS, Costa ÉO, Duarte TG, Charret TS, Castiglione RC, Simões RL, Pascoal VDB, Döring TH, da Silva FC, Ferreira VF, S de Oliveira A, Pascoal ACRF, Cruz ALS, and Nascimento V
- Abstract
Due to the growth in the number of patients and the complexity involved in anticancer therapies, new therapeutic approaches are urgent and necessary. In this context, compounds containing the selenium atom can be employed in developing new medicines due to their potential therapeutic efficacy and unique modes of action. Furthermore, tellurium, a previously unknown element, has emerged as a promising possibility in chalcogen-containing compounds. In this study, 13 target compounds ( 9a - i , 10a-c , and 11 ) were effectively synthesized as potential anticancer agents, employing a CuI-catalyzed Csp-chalcogen bond formation procedure. The developed methodology yielded excellent results, ranging from 30 to 85%, and the compounds were carefully characterized. Eight of these compounds showed promise as potential therapeutic drugs due to their high yields and remarkable selectivity against SCC-9 cells (squamous cell carcinoma). Compound 10a , in particular, demonstrated exceptional selectivity, making it an excellent choice for cancer cell targeting while sparing healthy cells. Furthermore, complementing in silico and molecular docking studies shed light on their physical features and putative modes of action. This research highlights the potential of these compounds in anticancer treatments and lays the way for future drug development efforts., Competing Interests: The authors declare no competing financial interest., (© 2024 The Authors. Published by American Chemical Society.)
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- 2024
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5. The Influence of Microglia on Neuroplasticity and Long-Term Cognitive Sequelae in Long COVID: Impacts on Brain Development and Beyond.
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Chagas LDS and Serfaty CA
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- Adult, Child, Humans, Post-Acute COVID-19 Syndrome, Neuronal Plasticity, Brain, Disease Progression, Cognition, Microglia, COVID-19 complications
- Abstract
Microglial cells, the immune cells of the central nervous system, are key elements regulating brain development and brain health. These cells are fully responsive to stressors, microenvironmental alterations and are actively involved in the construction of neural circuits in children and the ability to undergo full experience-dependent plasticity in adults. Since neuroinflammation is a known key element in the pathogenesis of COVID-19, one might expect the dysregulation of microglial function to severely impact both functional and structural plasticity, leading to the cognitive sequelae that appear in the pathogenesis of Long COVID. Therefore, understanding this complex scenario is mandatory for establishing the possible molecular mechanisms related to these symptoms. In the present review, we will discuss Long COVID and its association with reduced levels of BDNF, altered crosstalk between circulating immune cells and microglia, increased levels of inflammasomes, cytokines and chemokines, as well as the alterations in signaling pathways that impact neural synaptic remodeling and plasticity, such as fractalkines, the complement system, the expression of SIRPα and CD47 molecules and altered matrix remodeling. Together, these complex mechanisms may help us understand consequences of Long COVID for brain development and its association with altered brain plasticity, impacting learning disabilities, neurodevelopmental disorders, as well as cognitive decline in adults.
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- 2024
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6. Oral microbiota, co-evolution, and implications for health and disease: The case of indigenous peoples.
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Marcano-Ruiz M, Lima T, Tavares GM, Mesquita MTS, Kaingang LDS, Schüler-Faccini L, and Bortolini MC
- Abstract
Evidence indicates that oral microbiota plays a crucial role in human health and disease. For instance, diseases with multifactorial etiology, such as periodontitis and caries, which cause a detrimental impact on human well-being and health, can be caused by alterations in the host-microbiota interactions, where non-pathogenic bacteria give way to pathogenic orange/red-complex bacterial species (a change from a eubiotic to dysbiotic state). In this scenario, where thousands of oral microorganisms, including fungi, archaea, and phage species, and their host are co-evolving, a set of phenomena, such as the arms race and Red or Black Queen dynamics, are expected to operate. We review concepts on the subject and revisit the nature of bacterial complexes linked to oral health and diseases, as well as the problem of the bacterial resistome in the face of the use of antibiotics and what is the impact of this on the evolutionary trajectory of the members of this symbiotic ecosystem. We constructed a 16SrRNA tree to show that adaptive consortia of oral bacterial complexes do not necessarily rescue phylogenetic relationships. Finally, we remember that oral health is not exempt from health disparity trends in some populations, such as Native Americans, when compared with non-Indigenous people.
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- 2024
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7. Heritability estimates and genome-wide association study of methane emission traits in Nellore cattle.
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Souza LL, Dominguez-Castaño P, Gianvecchio SB, Sakamoto LS, Rodrigues GRD, Soares TLDS, Bonilha SFM, Marcatto JOS, Galvão Albuquerque L, Vasconcelos Silva JAI, and Zerlotti Mercadante ME
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- Animals, Cattle genetics, Quantitative Trait Loci, Male, Female, Genotype, Breeding, Phenotype, Methane metabolism, Genome-Wide Association Study veterinary, Polymorphism, Single Nucleotide
- Abstract
The objectives of the present study were to estimate the heritability for daily methane emission (CH4) and residual daily methane emission (CH4res) in Nellore cattle, as well as to perform genome-wide association studies (GWAS) to identify genomic regions and candidate genes influencing the genetic variation of CH4 and CH4res. Methane emission phenotypes of 743 Nellore animals belonging to 3 breeding programs were evaluated. CH4 was measured using the sulfur hexafluoride (SF6) tracer technique (which involves an SF6 permeation tube introduced into the rumen, and an appropriate apparatus on each animal), and CH4res was obtained as the difference between observed CH4 and CH4 adjusted for dry matter intake. A total of 6,252 genotyped individuals were used for genomic analyses. Data were analyzed with a univariate animal model by the single-step GBLUP method using the average information restricted maximum likelihood (AIREML) algorithm. The effects of single nucleotide polymorphisms (SNPs) were obtained using a single-step GWAS approach. Candidate genes were identified based on genomic windows associated with quantitative trait loci (QTLs) related to the 2 traits. Annotation of QTLs and identification of candidate genes were based on the initial and final coordinates of each genomic window considering the bovine genome ARS-UCD1.2 assembly. Heritability estimates were of moderate to high magnitude, being 0.42 ± 0.09 for CH4 and 0.21 ± 0.09 for CH4res, indicating that these traits will respond rapidly to genetic selection. GWAS revealed 11 and 15 SNPs that were significantly associated (P < 10-6) with genetic variation of CH4 and CH4res, respectively. QTLs associated with feed efficiency, residual feed intake, body weight, and height overlapped with significant markers for the traits evaluated. Ten candidate genes were present in the regions of significant SNPs; 3 were associated with CH4 and 7 with CH4res. The identified genes are related to different functions such as modulation of the rumen microbiota, fatty acid production, and lipid metabolism. CH4 and CH4res presented sufficient genetic variation and may respond rapidly to selection. Therefore, these traits can be included in animal breeding programs aimed at reducing enteric methane emissions across generations., (© The Author(s) 2024. Published by Oxford University Press on behalf of the American Society of Animal Science. All rights reserved. For commercial re-use, please contact reprints@oup.com for reprints and translation rights for reprints. All other permissions can be obtained through our RightsLink service via the Permissions link on the article page on our site—for further information please contact journals.permissions@oup.com.)
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- 2024
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8. Nearly Complete Genome Sequences of Two Canine Mamastrovirus 5 Strains from Latin America.
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de Deus DR, Siqueira JAM, Teixeira DM, Maués MAC, de Figueiredo MJFM, Sousa EC Jr, Portal TM, Soares LDS, Resque HR, da Silva LD, and Gabbay YB
- Abstract
We report the nearly complete genome sequences of CAstV-PK01 and CAstV-PK03, two canine astrovirus strains belonging to the species Mamastrovirus 5 , which were detected in fecal swab samples collected from puppies with diarrhea from two different kennels in the Brazilian Amazon.
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- 2023
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9. Pro-Apoptotic Antitumoral Effect of Novel Acridine-Core Naphthoquinone Compounds against Oral Squamous Cell Carcinoma.
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Zorzanelli BC, Ouverney G, Pauli FP, da Fonseca ACC, de Almeida ECP, de Carvalho DG, Possik PA, Rabelo VW, Abreu PA, Pontes B, Ferreira VF, Forezi LDSM, da Silva FC, and Robbs BK
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- Acridines pharmacology, Animals, Apoptosis, Cell Line, Tumor, Cell Proliferation, Molecular Docking Simulation, Squamous Cell Carcinoma of Head and Neck drug therapy, Antineoplastic Agents pharmacology, Antineoplastic Agents therapeutic use, Carcinoma, Squamous Cell drug therapy, Carcinoma, Squamous Cell pathology, Head and Neck Neoplasms drug therapy, Mouth Neoplasms drug therapy, Mouth Neoplasms pathology, Naphthoquinones pharmacology, Naphthoquinones therapeutic use
- Abstract
Oral squamous cell carcinoma (OSCC) is a global public health problem with high incidence and mortality. The chemotherapeutic agents used in the clinic, alone or in combination, usually lead to important side effects. Thus, the discovery and development of new antineoplastic drugs are essential to improve disease prognosis and reduce toxicity. In the present study, acridine-core naphthoquinone compounds were synthesized and evaluated for their antitumor activity in OSCC cells. The mechanism of action, pharmacokinetics, and toxicity parameters of the most promising compound was further analyzed using in silico, in vitro, and in vivo methods. Among the derivatives, compound 4e was highly cytotoxic (29.99 µM) and selective (SI 2.9) at levels comparable and generally superior to chemotherapeutic controls. Besides, compound 4e proved to be non-hemolytic, stable, and well tolerated in animals at all doses tested. Mechanistically, compound 4e promoted cell death by apoptosis in the OSCC cell, and molecular docking studies suggested this compound possibly targets enzymes important for tumor progression, such as RSK2, PKM2, and topoisomerase IIα. Importantly, compound 4e presented a pharmacological profile within desirable parameters for drug development, showing promise for future preclinical trials.
- Published
- 2022
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10. Beloved Whiskers: Management Type, Care Practices and Connections to Welfare in Domestic Cats.
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Machado DS, Gonçalves LDS, Vicentini RR, Ceballos MC, and Sant'Anna AC
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The quality of cat care practices depends in part on the type of management applied, which either positively or negatively impacts cat welfare. This study investigated whether the type of cat management (indoor vs. outdoor) was related to other cat care practices adopted by cat owners, associated with the quality of human-cat relationships and cat welfare. An online survey was distributed via social networks. Descriptive statistics, categorical Principal Component Analysis, Fisher's Exact test and Chi-square test in contingency table were applied. A total of 16,302 cat owners returned the survey. Most Brazilian owners reported indoor management of their cats; this was related to owners living in apartments, more frequent use of cat care practices, and more interactions with their pets. Outdoor management was related to cats living in houses or farms, sleeping outdoors or around the neighborhood, and owners had fewer interaction with their pets. In conclusion, owners practicing indoor management seemed to be closer to their cats than owners reporting outdoor management. However, obesity and owner-reported behavioral problems were associated with indoor management.
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- 2020
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11. Temperament in Domestic Cats: A Review of Proximate Mechanisms, Methods of Assessment, Its Effects on Human-Cat Relationships, and One Welfare.
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Travnik IC, Machado DS, Gonçalves LDS, Ceballos MC, and Sant'Anna AC
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Temperament can be defined as interindividual differences in behavior that are stable over time and in different contexts. The terms 'personality', 'coping styles', and 'behavioral syndromes' have also been used to describe these interindividual differences. In this review, the main aspects of cat temperament research are summarized and discussed, based on 43 original research papers published between 1986 and 2020. We aimed to present current advances in cat temperament research and identify potential gaps in knowledge, as well as opportunities for future research. Proximate mechanisms, such as genetic bases of temperament, ontogenesis and developmental factors, physiological mechanisms, and relationships with morphology, were reviewed. Methods traditionally used to assess the temperament of cats might be classified based on the duration of procedures (short- vs. long-term measures) and the nature of data recordings (coding vs. rating methods). The structure of cat temperament is frequently described using a set of behavioral dimensions, primarily based on interindividual variations in cats' responses toward humans and conspecifics (e.g., friendliness, sociability, boldness, and aggressiveness). Finally, cats' temperaments have implications for human-animal interactions and the one welfare concept. Temperament assessment can also contribute to practical aspects, for example, the adoption of shelter cats.
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- 2020
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12. Environmental Signals on Microglial Function during Brain Development, Neuroplasticity, and Disease.
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Chagas LDS, Sandre PC, Ribeiro E Ribeiro NCA, Marcondes H, Oliveira Silva P, Savino W, and Serfaty CA
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- Animals, Brain growth & development, Homeostasis immunology, Homeostasis physiology, Humans, Immune System growth & development, Immune System physiology, Inflammation physiopathology, Brain physiology, Microglia physiology, Neurodegenerative Diseases physiopathology, Neuronal Plasticity physiology, Stress, Physiological physiology
- Abstract
Recent discoveries on the neurobiology of the immunocompetent cells of the central nervous system (CNS), microglia, have been recognized as a growing field of investigation on the interactions between the brain and the immune system. Several environmental contexts such as stress, lesions, infectious diseases, and nutritional and hormonal disorders can interfere with CNS homeostasis, directly impacting microglial physiology. Despite many encouraging discoveries in this field, there are still some controversies that raise issues to be discussed, especially regarding the relationship between the microglial phenotype assumed in distinct contexts and respective consequences in different neurobiological processes, such as disorders of brain development and neuroplasticity. Also, there is an increasing interest in discussing microglial-immune system cross-talk in health and in pathological conditions. In this review, we discuss recent literature concerning microglial function during development and homeostasis. In addition, we explore the contribution of microglia to synaptic disorders mediated by different neuroinflammatory outcomes during pre- and postnatal development, with long-term consequences impacting on the risk and vulnerability to the emergence of neurodevelopmental, neurodegenerative, and neuropsychiatric disorders.
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- 2020
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13. New Perspectives on Antifungal Therapy.
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da Silva FC, Futuro DO, and Magalhães Forezi LDS
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- Humans, Antifungal Agents therapeutic use, Mycoses drug therapy
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- 2020
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14. Rapid plasticity of intact axons following a lesion to the visual pathways during early brain development is triggered by microglial activation.
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Chagas LDS, Trindade P, Gomes ALT, Mendonça HR, Campello-Costa P, Faria Melibeu ADC, Linden R, and Serfaty CA
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- Animals, Animals, Newborn, Axons chemistry, Brain Chemistry physiology, Eye Enucleation adverse effects, Eye Enucleation trends, Microglia chemistry, Rats, Time Factors, Visual Pathways chemistry, Visual Pathways pathology, Axons metabolism, Brain growth & development, Brain metabolism, Microglia metabolism, Neuronal Plasticity physiology, Visual Pathways metabolism
- Abstract
Lesions in the central nervous system (CNS) can often induce structural reorganization within intact circuits of the brain. Several studies show advances in the understanding of mechanisms of brain plasticity and the role of the immune system activation. Microglia, a myeloid derived cell population colonizes the CNS during early phases of embryonic development. In the present study, we evaluated the role of microglial activation in the sprouting of intact axons following lesions of the visual pathways. We evaluated the temporal course of microglial activation in the superior colliculus following a contralateral monocular enucleation (ME) and the possible involvement of microglial cells in the plastic reorganization of the intact, uncrossed, retinotectal pathway from the remaining eye. Lister Hooded rats were enucleated at PND 10 and submitted to systemic treatment with inhibitors of microglial activation: cyclosporine A and minocycline. The use of neuroanatomical tracers allowed us to evaluate the time course of structural axonal plasticity. Immunofluorescence and western blot techniques were used to observe the expression of microglial marker, Iba-1 and the morphology of microglial cells. Following a ME, Iba-1 immunoreactivity showed a progressive increase of microglial activation in the contralateral SC at 24 h, peaking at 72 h after the lesion. Treatment with inhibitors of microglial activation blocked both the structural plasticity of intact uncrossed retinotectal axons and microglial activation as seen by the decrease of Iba-1 immunoreactivity. The local blockade of TNF-α with a neutralizing antibody was also able to block axonal plasticity of the intact eye following a ME. The data support the hypothesis that microglial activation is a necessary step for the regulation of neuroplasticity induced by lesions during early brain development., (Copyright © 2018 Elsevier Inc. All rights reserved.)
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- 2019
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15. High prevalence of norovirus in children with sporadic acute gastroenteritis in Manaus, Amazon Region, northern Brazil.
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Costa STPD, Fumian TM, Lima ICG, Siqueira JAM, Silva LDD, Hernández JDM, Lucena MSS, Reymão TKA, Soares LDS, Mascarenhas JDP, and Gabbay YB
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- Acute Disease, Adolescent, Brazil epidemiology, Caliciviridae Infections epidemiology, Child, Child, Preschool, Feces virology, Female, Gastroenteritis epidemiology, Genetic Variation, Genotype, Humans, Infant, Infant, Newborn, Male, Prevalence, RNA, Viral genetics, Reverse Transcriptase Polymerase Chain Reaction, Caliciviridae Infections virology, Gastroenteritis virology, Norovirus genetics, Norovirus isolation & purification
- Abstract
Background: Norovirus (NoV) is a major cause of acute gastroenteritis (AGE) worldwide, especially in children under five years. Studies involving the detection and molecular characterisation of NoV have been performed in Brazil, demonstrating its importance as an etiological agent of AGE., Objectives: The objectives of this study were to investigate the frequency of human NoV and to genotype the strains isolated from 0-14-year-old patients of AGE in Manaus, Brazil, over a period of two years., Methods: A total of 426 faecal samples were collected between January 2010 and December 2011. All samples were tested for the presence of NoV antigens using a commercial enzyme immunoassay kit. RNA was extracted from all faecal suspensions and reverse transcription-polymerase chain reaction (RT-PCR) for the NoV-polymerase partial region was performed as a trial test. Positive samples were then subjected to PCR with specific primers for partial capsid genes, which were then sequenced., Findings: NoV was detected in 150 (35.2%) faecal samples, for at least one of the two techniques used. NoV was detected in children from all age groups, with the highest positivity observed among the group of 1-2 years old. Clinically, fever was verified in 43% of the positive cases and 46.3% of the negative cases, and vomiting was observed in 75.8% and 70.8% cases in these groups, respectively. Monthly distribution showed that the highest positivity was observed in January 2010 (81.2%), followed by February and April 2010 and March 2011, when the positivity rate reached almost 50%. Phylogenetic analyses performed with 65 positive strains demonstrated that 58 (89.2%) cases of NoV belonged to genotype GII.4, five (7.7%) to GII.6, and one (1.5%) each to GII.7 and GII.3., Main Conclusions: This research revealed a high circulation of NoV GII.4 in Manaus and contributed to the understanding of the importance of this virus in the aetiology of AGE cases, especially in a region with such few studies available.
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- 2017
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16. Plant Growth Promoting Bacteria Associated with Langsdorffia hypogaea -Rhizosphere-Host Biological Interface: A Neglected Model of Bacterial Prospection.
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Felestrino ÉB, Santiago IF, Freitas LD, Rosa LH, Ribeiro SP, and Moreira LM
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Soil is a habitat where plant roots and microorganisms interact. In the region of the Brazilian Iron Quadrangle (IQ), studies involving the interaction between microbiota and plants have been neglected. Even more neglected are the studies involving the holoparasite plant Langsdorffia hypogaea Mart. (Balanophoraceae). The geomorphological peculiarities of IQ soil, rich in iron ore, as well as the model of interaction between L. hypogaea , its hosts and the soil provide a unique niche that acts as selective pressure to the evolution of plant growth-promoting bacteria (PGPB). The aim of this study was to prospect the bacterial microbiota of holoparasitic plant L. hypogaea , its plant host and corresponding rhizosphere of IQ soil, and to analyze the potential of these isolates as PGPB. We obtained samples of 11 individuals of L. hypogaea containing fragments of host and rhizosphere remnants, resulting in 81 isolates associated with Firmicutes and Proteobacteria phyla. The ability to produce siderophores, hydrocyanic acid (HCN), indole-3-acetic acid (IAA), nitrogen (N
2 ) fixation, hydrolytic enzymes secretion and inhibition of enteropathogens, and phytopathogens were evaluated. Of the total isolates, 62, 86, and 93% produced, respectively, siderophores, IAA, and were able to fix N2 . In addition, 27 and 20% of isolates inhibited the growth of enteropathogens and phytopathogens, respectively, and 58% were able to produce at least one hydrolytic activity investigated. The high number of isolates that produce siderophores and indole-3-acetic acid suggests that this microbiota may be important for adaptation of plants to IQ. The results demonstrate for the first time the biological importance of Brazilian IQ species as reservoirs of specific microbiotas that might be used as PGPB on agricultural land or antropized soils that needs to be reforested.- Published
- 2017
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17. SAPOVIRUSES IN CHILDREN WITH ACUTE GASTROENTERITIS FROM MANAUS , AMAZON REGION, BRAZIL, 2010-2011.
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Reymão TK, Hernandez JD, Costa ST, Sousa MS, Oliveira DS, Silva LD, Bandeira RD, Lima IC, Soares LD, Mascarenhas JD, and Gabbay YB
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- Acute Disease, Brazil epidemiology, Caliciviridae Infections diagnosis, Child, Child, Preschool, Feces virology, Gastroenteritis diagnosis, Gastroenteritis virology, Genotype, Humans, Phylogeny, Reverse Transcriptase Polymerase Chain Reaction, Sapovirus isolation & purification, Caliciviridae Infections epidemiology, Gastroenteritis epidemiology, Sapovirus genetics
- Abstract
Sapoviruses (SaVs) are responsible for acute gastroenteritis in humans, especially children and the elderly. In Brazil, data on SaVs infections are very limited, especially in Northern Brazil. Here, we investigated the occurrence of SaVs in samples from hospitalized children under ten years old that presented acute gastroenteritis. Positive samples were genotyped and phylogenetic analysis was performed using prototype strains sequences obtained from GenBank database. In total, 156 fecal samples were screened by RT-PCR for SaVs. A positivity rate of 3.8% (6/156) was found in children under three years of age. Four genotypes were detected: GI.I, GI.2 and GII.2?-GII.4?/GII.4, suggesting a possible inter-genotypes recombination. Most infections (83.3%) occurred between August and September. The positivity was similar to that found in other countries and genotyping demonstrated the presence of distinct genotypes. To our knowledge, this is the first study reporting the circulation of SaVs in Manaus, state of Amazonas, Amazon region, Brazil.
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- 2016
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18. Analysis of uncommon norovirus recombinants from Manaus, Amazon region, Brazil: GII.P22/GII.5, GII.P7/GII.6 and GII.Pg/GII.1.
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Hernandez JDM, Silva LDD, Sousa EC Junior, Lucena MSS, Soares LDS, Mascarenhas JDP, and Gabbay YB
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- Brazil epidemiology, Computational Biology methods, Genotype, Humans, Open Reading Frames, Phylogeny, Caliciviridae Infections epidemiology, Caliciviridae Infections virology, Gastroenteritis epidemiology, Gastroenteritis virology, Norovirus classification, Norovirus genetics, Recombination, Genetic
- Abstract
Norovirus (NoV) is responsible for outbreaks and sporadic cases of nonbacterial acute gastroenteritis in humans worldwide. The virus consists of small round particles containing a single-stranded RNA genome that is divided into three Open Reading Frames. NoV evolves via mechanisms of antigenic drift and recombination, which lead to the emergence of new strains that are capable of causing global epidemics. Recombination usually occurs in the ORF1/ORF2 overlapping region and generates strains with different genotypes in the polymerase and capsid region. The primary objective of this study was to analyze recombination in positive-NoV samples. Specimens were collected during 2011, 2012 and 2014, from children under two years of age presenting gastrointestinal symptoms such as vomiting and diarrhea. The partial polymerase (B region), capsid (D region) genes and the ORF1-ORF2 overlap regions were sequenced in each sample. The recombinant analyses were performed in the Simplot software v.3.5.1 and RDP4 Beta v. 4.6 program. These analyses showed that GII.Pg/GII.1, GII.P7/GII.6, and GII.P22/GII.5 were recombinant strains. To our knowledge, this is the first time that the GII.P22/GII.5 and GII.Pg/GII.1 strains were described in South America and the GII.P7/GII.6 was detected in Northern of Brazil., (Copyright © 2016 Elsevier B.V. All rights reserved.)
- Published
- 2016
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19. Phylogenetic analysis of human group C rotavirus in hospitalized children with gastroenteritis in Belém, Brazil.
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Lobo Pdos S, Guerra Sde F, Siqueira JA, Soares Lda S, Gabbay YB, Linhares AC, and Mascarenhas JD
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- Brazil epidemiology, Child, Hospitalized, Child, Preschool, Feces virology, Female, Gastroenteritis epidemiology, Humans, Infant, Male, Molecular Epidemiology, Reverse Transcriptase Polymerase Chain Reaction, Rotavirus isolation & purification, Rotavirus Infections epidemiology, Viral Nonstructural Proteins genetics, Viral Structural Proteins genetics, Gastroenteritis virology, Genetic Variation, Genotype, Phylogeny, Rotavirus classification, Rotavirus genetics, Rotavirus Infections virology
- Abstract
Group C rotavirus (RVC) is potentially an important pathogen associated with acute gastroenteritis (AG), especially in outbreaks. This study aims to detect and molecularly characterize RVC in hospitalized children with AG in Belém, Brazil. From May 2008 to April 2011, 279 stools were subjected to reverse-transcription polymerase chain reaction targeting VP7, VP6, VP4, and NSP4 genes. RVC positivity rate was 2.1% (6/279) and phylogenetic analysis of positive samples yields genotype G4-P[2]-I2-E2. No evidence of zoonotic transmission and VP7 gene demonstrated close relationship with Asian strains. RVC surveillance is worth to expand information on evolutionary and epidemiological features of this virus., (© 2015 Wiley Periodicals, Inc.)
- Published
- 2016
- Full Text
- View/download PDF
20. 1,2:5,6-Di-O-iso-propyl-idene-3-C-methyl-α-d-allo-furan-ose.
- Author
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Forezi Lda S, Silva MM, Santos Fda C, Ferreira VF, and de Souza MC
- Abstract
The title carbohydrate, C13H22O6, is a derivative of d-glycose, in which the furan-osidic and iso-propyl-idene rings are in twisted conformations. The mean plane of the furan-osidic ring makes a dihedral angle of 70.32 (18)° with the mean plane of the fused iso-propyl-idene ring. The methyl groups in the other iso-propyl-idene ring are disordered over two sets of sites, with an occupancy ratio of 0.74 (6):0.26 (6). In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds into chains with graph-set notation C(5) along [100]. Weak C-H⋯O interactions also occur.
- Published
- 2013
- Full Text
- View/download PDF
21. Norovirus diversity in diarrheic children from an African-descendant settlement in Belém, Northern Brazil.
- Author
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Aragão GC, Mascarenhas JD, Kaiano JH, de Lucena MS, Siqueira JA, Fumian TM, Hernandez Jd, de Oliveira CS, Oliveira Dde S, Araújo Eda C, Soares Lda S, Linhares AC, and Gabbay YB
- Subjects
- Animals, Brazil ethnology, Child, Diarrhea complications, Dogs, Feces virology, Gastroenteritis complications, Gastroenteritis ethnology, Gastroenteritis virology, Humans, Mamastrovirus genetics, Mamastrovirus isolation & purification, Mamastrovirus physiology, Norovirus physiology, Sapovirus genetics, Sapovirus isolation & purification, Sapovirus physiology, Black People statistics & numerical data, Diarrhea ethnology, Diarrhea virology, Genetic Variation, Norovirus genetics, Norovirus isolation & purification
- Abstract
Norovirus (NoV), sapovirus (SaV) and human astrovirus (HAstV) are viral pathogens that are associated with outbreaks and sporadic cases of gastroenteritis. However, little is known about the occurrence of these pathogens in relatively isolated communities, such as the remnants of African-descendant villages ("Quilombola"). The objective of this study was the frequency determination of these viruses in children under 10 years, with and without gastroenteritis, from a "Quilombola" Community, Northern Brazil. A total of 159 stool samples were obtained from April/2008 to July/2010 and tested by an enzyme immunoassay (EIA) and reverse transcription-polymerase chain reaction (RT-PCR) to detect NoV, SaV and HAstV, and further molecular characterization was performed. These viruses were detected only in the diarrheic group. NoV was the most frequent viral agent detected (19.7%-16/81), followed by SaV (2.5%-2/81) and HAstV (1.2%-1/81). Of the 16 NoV-positive samples, 14 were sequenced with primers targeting the B region of the polymerase (ORF1) and the D region of the capsid (ORF2). The results showed a broad genetic diversity of NoV, with 12 strains being classified as GII-4 (5-41.7%), GII-6 (3-25%), GII-7 (2-16.7%), GII-17 (1-8.3%) and GI-2 (1-8.3%), as based on the polymerase region; 12 samples were classified, based on the capsid region, as GII-4 (6-50%, being 3-2006b variant and 3-2010 variant), GII-6 (3-25%), GII-17 (2-16.7%) and GII-20 (1-8.3%). One NoV-strain showed dual genotype specificity, based on the polymerase and capsid region (GII-7/GII-20). This study provides, for the first time, epidemiological and molecular information on the circulation of NoV, SaV and HAstV in African-descendant communities in Northern Brazil and identifies NoV genotypes that were different from those detected previously in studies conducted in the urban area of Belém. It remains to be determined why a broader NoV diversity was observed in such a semi-isolated community.
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- 2013
- Full Text
- View/download PDF
22. Phylogenetic analysis of probable non-human genes of group A rotaviruses isolated from children with acute gastroenteritis in Belém, Brazil.
- Author
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Maestri RP, Kaiano JH, Neri DL, Soares Lda S, Guerra Sde F, Oliveira Dde S, Farias YN, Gabbay YB, Leite JP, Linhares Ada C, and Mascarenhas JD
- Subjects
- Acute Disease, Animals, Base Sequence, Brazil, Capsid Proteins genetics, Child, Preschool, Evolution, Molecular, Feces virology, Genetic Variation, Genotype, Humans, Infant, Infant, Newborn, RNA, Viral genetics, Reassortant Viruses genetics, Reassortant Viruses isolation & purification, Reverse Transcriptase Polymerase Chain Reaction, Rotavirus classification, Rotavirus genetics, Rotavirus Infections transmission, Rotavirus Infections veterinary, Rotavirus Infections virology, Viral Core Proteins genetics, Viral Nonstructural Proteins genetics, Gastroenteritis virology, Genes, Viral, Phylogeny, Rotavirus isolation & purification
- Abstract
Rotaviruses (RVs) are the main cause of acute viral gastroenteritis in both humans and young animals of various species such as calves, horses, pigs, dogs, cats, and birds. The genetic diversity of RVs is related to a variety of evolutionary mechanisms, including point mutation, and genome reassortment. The objective of this study was to characterize molecularly genes that encode structural and nonstructural proteins in unusual RV strains. The clinical specimens selected for this study were obtained from children and newborn with RV gastroenteritis, who participated in research projects on viral gastroenteritis conducted at the Evandro Chagas Institute. Structural (VP1-VP4, VP6, and VP7) and nonstructural (NSP1-NSP6) genes were amplified from stool samples by the polymerase chain reaction and subsequently sequenced. Eight unusual RV strains isolated from children and newborn with gastroenteritis were studied. Reassortment between genes of animal origin were observed in 5/8 (62.5%) strains analyzed. These results demonstrate that, although rare, interspecies (animal-human) transmission of RVs occurs in nature, as observed in the present study in strains NB150, HSP034, HSP180, HST327, and RV10109. This study is the first to be conducted in the Amazon region and supports previous data showing a close relationship between genes of human and animal origin, representing a challenge to the large-scale introduction of RV vaccines in national immunization programs., (Copyright © 2012 Wiley Periodicals, Inc.)
- Published
- 2012
- Full Text
- View/download PDF
23. Identification of lineage III of G12 rotavirus strains in diarrheic children in the Northern Region of Brazil between 2008 and 2010.
- Author
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Soares Lda S, Lobo Pdos S, Mascarenhas JD, Neri DL, Guerra Sde F, de Oliveira Ado S, Maestri RP, Oliveira Dde S, de Menezes EM, and Linhares Ada C
- Subjects
- Brazil epidemiology, Child, Preschool, Diarrhea epidemiology, Female, Genotype, Humans, Infant, Male, Molecular Sequence Data, Phylogeny, Rotavirus genetics, Rotavirus Infections epidemiology, Diarrhea virology, Rotavirus classification, Rotavirus isolation & purification, Rotavirus Infections virology
- Abstract
This study reports on the surveillance for rotavirus genotypes and the identification of G12 human rotavirus in the Northern Region of Brazil. Rotavirus-positive samples were collected from children <5 years of age with acute diarrhea from January 2008 to October 2010. G2P[4] was the most prevalent genotype, accounting for 45.6% (126/303) of cases. Five rotavirus strains bearing G12P[6] genotype specificity were detected. Phylogenetic analysis of the VP7 gene showed that G12 strains clustered into lineage III. This is the first detection of G12 strains from lineage III in Latin America, broadening the current evidence for the worldwide emergence of this genotype.
- Published
- 2012
- Full Text
- View/download PDF
24. Evaluation of third-generation RIDASCREEN enzyme immunoassay for the detection of norovirus antigens in stool samples of hospitalized children in Belém, Pará, Brazil.
- Author
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Siqueira JA, Linhares Ada C, Oliveira Dde S, Soares Lda S, Lucena MS, Wanzeller AL, Mascarenhas JD, and Gabbay YB
- Subjects
- Brazil, Caliciviridae Infections virology, Child, Hospitalized, Child, Preschool, Genotype, Humans, Immunoenzyme Techniques, Infant, Microscopy, Electron, Transmission, Norovirus chemistry, Norovirus genetics, Norovirus ultrastructure, RNA, Viral genetics, Reverse Transcriptase Polymerase Chain Reaction, Sensitivity and Specificity, Sequence Analysis, DNA, Virion ultrastructure, Antigens, Viral analysis, Caliciviridae Infections diagnosis, Feces virology, Gastroenteritis virology, Norovirus isolation & purification
- Abstract
Noroviruses (NoVs) are major agents of gastroenteritis outbreaks and hospitalization worldwide. This study evaluated the sensitivity and specificity of the commercially available third-generation RIDASCREEN® Norovirus Enzyme Immunoassay (EIA) kit in comparison to the reverse transcription-polymerase chain reaction (RT-PCR) to detect NoVs in hospitalized children with gastroenteritis. An agreement of 88% (81/92) was observed when comparing EIA with RT-PCR. A sensitivity of 92% and a specificity of 83.3% were demonstrated. Eleven samples were positive by 1 method only (4 RT-PCR/7 EIA). Fourteen samples were sequenced and all classified as NoV genogroup GII-4. The 7 positive only by EIA were also evaluated by electron microscopy, and in 3 (42.9%) samples viral particles with a suggestive morphology of NoVs were visualized. These same samples were tested by seminested-RT-PCR with a positivity of 85.7%. The results obtained in this study demonstrated a significant improvement in the sensitivity and specificity of this updated assay., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2011
- Full Text
- View/download PDF
25. Newborn hearing screening in the Limiar Clinic in Porto Velho - Rondônia.
- Author
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Botelho MS, Silva VB, Arruda Lda S, Kuniyoshi IC, Oliveira LL, and Oliveira AS
- Subjects
- Brazil epidemiology, Female, Hearing Loss etiology, Hearing Tests methods, Hearing Tests statistics & numerical data, Humans, Hyperbilirubinemia, Neonatal complications, Infant, Newborn, Male, Otoacoustic Emissions, Spontaneous, Prevalence, Retrospective Studies, Risk Factors, Hearing Loss epidemiology, Hyperbilirubinemia, Neonatal epidemiology, Neonatal Screening
- Abstract
Unlabelled: With the universal hearing screening we can prevent auditory disorders in children., Aim: To characterize the program of neonatal auditory screening into a population of neonates., Materials and Methods: longitudinal cohort study. We surveyed the clinic's database on neonatal auditory screening in the city of Porto Velho, Rondônia., Results: Among the 6,889 newborns in the database, 5,700 (82.7%) passed and 1,189 (17.3%) failed the first screening. Of the group which failed 900 (75.7 %) returned for retesting. Among these, 15 (0.22 %) newborns had hearing loss confirmed. The most prevalent was neural hearing loss with 46.7% confirmed cases; they had hyperbilirubinemia as the most prevalent risk factor., Conclusion: hyperbilirubinemia was the most prevalent risk factor found in the group of hearing impaired children. The prevalence of hearing loss was of 2 in 1,000 newborns. It is important to highlight the relevant association between neural hearing loss caused by hyperbilirubinemia and sensorineural hearing loss of unknown causes.
- Published
- 2010
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