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Steady-state and time-resolved fluorescence techniques were employed to study the excited-state proton transfer (ESPT) from a reversibly dissociating photoacid, 2-naphthol-6,8-disulfonate (2N68DS). The reaction was carried out in water and in acetonitrile-water solutions. We find by carefully analyzing the geminate recombination dynamics of the photobase-proton pair that follows the ESPT reaction that there are two targets for the proton back-recombination reaction: the original O - dissociation site and the SO 3 - side group at the 8 position which is closest to the proton OH dissociation site. This observation is corroborated in acetonitrile-water mixtures of χ water < 0.14, where a slow intramolecular ESPT occurs on a time scale of about 1 ns between the OH group and the SO 3 - group via H-bonding water. The proton-transferred R * O - fluorescence band in mixtures of χ water < 0.14 where only intramolecular ESPT occurs is red shifted by about 2000 cm -1 from the free R * O - band in neat water. As the water content in the mixture increases above χ water = 0.14, the R * O - fluorescence band shifts noticeably to the blue region. For χ water > 0.23 the band resembles the free anion band observed in pure water. Concomitantly, the ESPT rate increases when χ water increases because the intermolecular ESPT to the solvent (bulk water) gradually prevails over the much slower intramolecular via the water-bridges ESPT process.

Steady-state and time-resolved fluorescence techniques were used to study the excited-state proton transfer (ESPT) from an irreversible photoacid, 1-naphthol-3,6-disulfonate (1NP36DS), to methanol-water mixtures. We found that at χ water = 0.3 the ESPT rate constant is higher by a factor of 10 that in neat methanol. TD-DFT calculations show that a mixed molecular bridge of two methanol molecules and one water molecule enables the ESPT from the 1-OH to the 3-sulfonate. The RO - (S 1 ) state is stable by -2.5 kcal/mol in comparison to the ROH(S 1 ) state. We compare the ESPT rate constants of a reversible photoacid, 8-hydroxy-1,3,6-pyrenetrisulfonate (HPTS), in the same methanol-water mixtures. At χ water ≈ 0.3 the ESPT rate constant of HPTS increased by only 15%. We explain the large difference of the ESPT rate of 1NP36DS by the formation of a water bridge or a mixed methanol-water bridge from 1-OH to one of the sulfonates and the absence of such a bridge in HPTS. The water or mixed methanol-water bridge of 1NP36DS enhances the ESPT rate in methanol-water mixtures of low water mole ratio.

Steady-state and time-resolved fluorescence techniques were employed to study a superphotoacid with a p K a * of ∼-7, the chlorobenzoate phenol cyanine picolinium salt (CBCyP) in acetonitrile-water mixtures. We found that the time-resolved fluorescence is bimodal. The amplitude of the short-time component depends on χ water ; the larger χ water , the greater the amplitude. We found that the excited-state proton-transfer (ESPT) rate constant, k PT , is ≥5 × 10 12 s -1 in mixtures of χ water ≥ 0.08, whereas in neat water, k PT = 6 × 10 12 s -1 . The long-time component has a lifetime of 50 ps at χ water = 0.75. We attribute this time component to the CBCyP molecules that are not hydrogen-bonded to H 2 O clusters. The results suggest that the ESPT rate constant to water in acetonitrile-water mixtures depends only slightly on the water cluster size and structure surrounding the CBCyP molecule. We attribute the independence of the ESPT rate on the average water-cluster size to the large photoacidity of CBCyP. QM TD-DFT calculations found that in the excited-state the RO - (S 1 ) species that is formed by the ESPT process is more stable than the ROH(S 1 ) species by -5 kcal/mol when four water molecules accept the proton, and when six water molecules accept the proton, the RO - (S 1 ) drops to -10 kcal/mol. The calculations show that energy stabilities are kept constant in implicit CH 3 CN-H 2 O solvent mixtures of dielectric constant of ε ≥ 45.

Steady-state and time-resolved fluorescence techniques were used to study excited-state proton transfer (ESPT) to water of the reversible photoacid 2-naphthol-8-sulfonate (2N8S) in acetonitrile/water mixtures. In acetonitrile-rich mixtures, up to χ water ≤ 0.12, we found a slow ESPT process on the order of nanoseconds. At χ water ≈ 0.15, the RO - fluorescence band intensity is at the minimum, whereas at χ water ≈ 0.030, it is at the maximum. The steady-state fluorescence spectra of these mixtures show that the intensity of the RO - fluorescence band at χ water ≈ 0.030 is about 0.24 of that of the ROH band. We explain this unusual phenomenon by the presence of water clusters that exist in the acetonitrile-rich CH 3 CN/H 2 O mixtures. We propose that a water bridge forms between the 2-OH and 8-sulfonate by preferential solvation of 2N8S, and this enables the ESPT process between the two sites of the molecular structure of 2N8S. In mixtures of χ water ≥ 0.25, the ESPT process takes place to water clusters in the bulk mixture. The higher the χ water in the mixture, the greater the ESPT rate constant. In neat water, the rate constant is rather small, 4.5 × 10 9 s -1 . TD-DFT calculations show that a single water molecule can bridge between 2-OH and 8-sulfonate in the excited state. The activation energy for the ESPT reaction is about 9 kcal/mol, and the RO - (S 1 ) species is energetically above the ROH(S 1 ) species by about 1.6 kcal/mol.

We used steady-state and time-resolved fluorescence techniques to study the excited-state proton transfer (ESPT) and the nonradiative properties of two irreversible photoacids, 1-naphthol-4-sulfonate (1N4S) and 1-naphthol-5-sulfonate (1N5S). We found that the ESPT rate constant of 1N4S in water is 2.2 × 10 10 s -1 , whereas in methanol, it is smaller by about 3 orders of magnitude and is not observed. The ESPT process of 1N5S competes with a major nonradiative process of equal rate and k PT of 2.2 × 10 10 s -1 . In methanol-water mixtures of χ H 2 O = 0.2, the fluorescence lifetime of the ROH form of 1N5S is lower by a factor of 10 than that in pure methanol. In the steady-state fluorescence spectra of 1N5S in methanol-water mixtures, there are two iso-emissive points, one for χ H 2 O < 0.2 and one for χ H 2 O > 0.3. This large reduction in fluorescence intensity and the two iso-emissive points are explained by the existence of a mixed water-methanol bridge of about three molecules that connects the proton donor 1-OH with the 5-sulfonate in mixtures of χ H 2 O < 0.2. The bridge enhances both the ESPT and the nonradiative processes. For 1N4S in methanol-water mixtures at χ H 2 O ≈0.2, the reduction in the fluorescence lifetime is only by ∼30%, and only one iso-emissive point exists in the steady-state fluorescence spectra for 0 <χ H 2 O < 1. TD-DFT computations show that a mixed bridge of one water molecule and two methanol molecules that connects the 1-OH with 5-sulfonate is more stable by 7.7 kcal/mol than the 1-OH reactant in the S 1 state, and the barrier is only 8.0 kcal/mol. The nonradiative channel is because the S 2 dark state is about 4.6 kcal/mol higher than the S 1 state.

Steady-state and time-resolved fluorescence techniques as well as quantum-mechanical calculations were used to study the photophysics and photochemistry of a newly synthesized photoacid-the phenol cyanine picolinium salt. We found that the nonradiative rate constant k nr of the excited protonated form of the photoacid is larger than that of the excited-state proton transfer (ESPT) to the solvent, k ESPT . We estimate that the quantum efficiency of the ESPT process is about 0.16. The nonradiative process is explained by a partial trans-cis isomerization reaction, which leads to the formation of a "dark" excited state that can cross to the ground state by nonadiabatic coupling. Moreover, the ESPT process is coupled to the photo-isomerization reaction, as this latter reaction enhances the photoacidity of the studied compound, as a result of photoinduced charge transfer. To prevent trans-cis isomerization of the cyanine bridge, we conducted experiments of PCyP adsorbed on cellulose in the presence of water. We found that the steady-state fluorescence intensity increased by about a factor of 50 and the lifetime of the ROH band increased by the same factor. The fluorescence intensity of the RO - band with respect to that of the ROH band was the same as in aqueous solution. This explains why inhibiting the photo-isomerization reaction by adsorbing the PCyP on cellulose does not lead to a higher ESPT rate., Competing Interests: The authors declare no competing financial interest.

We employed steady-state and time-resolved fluorescence techniques to study the rates of excited-state proton and deuteron transfer (ESPT) from an irreversible photoacid, 1-naphthol-4-sulfonate, to solvent mixtures of H 2 O and D 2 O. We found that the overall ESPT rate to the solvent mixture does not follow a linear relation with the H 2 O mole ratio. We used a chemical kinetic model to explain the deviation of the ESPT rate constant from linear behavior with H 2 O mole ratio. There are three water species in the H 2 O-D 2 O mixtures, H 2 O, D 2 O, and HOD. There are six rate constants of H + and D + transfers to the three species. When the H 2 O mole ratio before mixing is 0.5, HOD mole ratio in the mixture is 0.5. The ESPT rate to HOD is much smaller than that of H + transfer to neat H 2 O and hence the concave shape of the plot of ESPT rate constants versus the H 2 O molar ratio of the mixtures.

We used the time-resolved fluorescence technique to measure the excited-state proton-transfer (ESPT) rates from 8-hydroxy-1,3,6-pyrenetrisulfonate (HPTS) to solvent mixtures of H 2 O and D 2 O. We found an anomalous deviation from linear mole-fraction behavior of the ESPT rate in H 2 O/D 2 O mixtures. We provide a chemical model based on equilibrium constant of the reaction H 2 O + D 2 O ↔ 2HOD and rate constants of the ESPT process of H and D transfers from HPTS to the mixed solvent. Anomalous deviation from linear mole-fraction behavior was previously found for H + /D + conductance in these mixtures.

We used the photoacid 8-hydroxy-1,3,6-pyrenetrisulfonate (HPTS) that converts blue photons to acidic protons in water, with an efficiency of close to 100%, and determined that this treatment conferred changes to colony morphology of the plant pathogen Colletotrichum gloeosporioides. The time elapsed until hyphal collapse is noticed depends on both the laser intensity in mW/cm 2 , and the concentration of HPTS in the Agar hydrogel. The time elapsed until hyphal collapse is noticed varies by only ±8% at HPTS concentrations of 500μM and at lower concentrations of HPTS the variance increases as the inverse of the concentration. We found that the effect on C. gloeosporioides was photoacid concentration and irradiation dose dependent. In the presence of 500μM of HPTS within the agar hydrogel-based medium, hyphae collapsed after 37±3.5min of irradiation at 405nm at an intensity of 25mW/cm 2 . We propose two mechanisms for such photo-alteration of C. gloeosporioides. One is based on the pH drop in the extracellular environment by the photo-protolytic process that the photoacid molecule undergoes. The second mechanism is based on an intracellular mechanism in which there is an uptake of HPTS into the interior of the fungus. We suggest that both mechanisms for photo-alteration which we found in this study may occur in plants during fungal infection., (Copyright © 2017 Elsevier B.V. All rights reserved.)

Steady-state and time-resolved fluorescence techniques were employed to study the excited-state proton transfer (ESPT) to water and D 2 O of a new photoacid, phenol benzoate cyanine picolinium salt (BCyP). We found that the ground-state pK a is about 6.5, whereas the excited-state pK a * is about -4.5. The ESPT rate constant, k PT , to water is ∼0.5 × 10 12 s -1 (τ PT ≈ 2 ps) and in D 2 O the rate is 0.33 × 10 12 s -1 . We determined that the BCyP photoacid belongs to the third regime of photoacids, the solvent-controlled regime.

Steady-state and time-resolved UV-vis spectroscopies were used to study the photoprotolytic properties of lumazine, which belongs to a class of biologically important compounds-the petridines. We found that in water an excited-state proton transfer occurs with a time constant of ∼70 ps and competes with a nonradiative rate of about the same value. The nonradiative rate of the protonated form of lumazine in polar and nonpolar solvents is large k nr ≥ 1.5 × 10 10 s -1 . The fluorescence properties indicate that in water, the ground-state neutral form of lumazine is already stable in two tautomeric forms. The fluorescence of the deprotonated form is quenched by protons in acidic solutions with a diffusion-controlled reaction rate. We conclude that the neutral form of lumazine is an irreversible mild photoacid.

About three decades ago, Pines and Huppert found that the excited-state proton transfer to water from a photoacid (8-hydroxy-1,3,6-pyrene trisulfonate (HPTS)) is followed by an efficient diffusion-assisted reversible geminate-recombination of the proton. To model the reaction, Pines, Huppert, and Agmon used the Debye-Smoluchowski equation with boundary conditions appropriate for reversible contact reaction kinetics. This reaction model has been used successfully to quantitatively fit the experimental data of the time-resolved fluorescence of HPTS and several commonly used photoacids. A consequence of the reversibility of this reaction is an apparent long-time tail of the photoacid fluorescence signal, obeying (after lifetime correction) a t -3/2 power law asymptotics. Recently, Lawler and Fayer reported that in bulk water the observed power-law decay of the long-time fluorescence tail of HPTS is -1.1 rather than -1.5, as expected from the spherically symmetric diffusion model. In the current study, we reaffirm our previous reports of the power-law behavior of HPTS fluorescence. We also demonstrate that molecular-level complications such as the deviation from spherical symmetry, rotational dynamics, competitive proton binding to the sulfonate moieties of HPTS, distance-dependent diffusion coefficient, and the initial starting point of the proton can affect the observed kinetics only at intermediate times, but not at asymptotically long times. Theoretically, we analyze the rebinding kinetics in terms of the number of extrema of the logarithmic derivative, showing subtle effects on the direction of approach to the asymptotic line (whether from above or below), which also appears to be corroborated experimentally.

Steady-state and time-resolved fluorescence techniques, in addition to quantum mechanical calculations, were employed to study the excited-state proton transfer (ESPT) to solvent of three 7-hydroxycoumarin dyes. We found that for 7-hydroxycoumarins in water, the ESPT rate is high, about 2 × 10 10 s -1 , whereas in methanol the ESPT rate is much lower than that over the nonradiative lifetime of the excited singlet state; thus, the ESPT efficiency is very low.

Replacement of the hydroxyl group of a hydrophilic sidechain by an H atom in the proton wire of GFP induces formation of a water-chain proton wire. Surprisingly, this "non-native" water chain functions as a proton wire with response times within 10 ps of the wild type protein. This remarkable rate retention is understood as a natural consequence of the well-known Grotthuss mechanism of proton transfer in water.

Steady-state and time-resolved fluorescence techniques and theoretical calculations were employed to study the photoprotolytic properties of a newly synthesized photoacid 3-hydroxypyridine-dipicolinium cyanine (HPPC) dye. This dye is similar to quinone cyanine 9, which we have previously studied and is the strongest photoacid currently synthesized. In this compound, we found that several proton transfer phenomena occur after excitation. We found that the excited-state proton transfer (ESPT) rate in water is ultrafast with kPT ≈ 1.5 × 10(12) s(-1). In methanol and ethanol the rate is slower by about 5 and 6 times, respectively. The fluorescence spectrum of HPPC in water consists of three bands with maxima at 520, 600, and 665 nm, whereas in monols and other protic solvents the fluorescence spectrum consists only of two emission bands at 530 and ∼700 nm. We assign the emission bands of HPPC at 520 nm to the protonated form and the 700 nm band in monols and 665 nm in water to the deprotonated form. The 600 nm band that is the most intense band in the fluorescence spectrum of HPPC in water we assign to the tautomeric form in which the proton is attached to the pyridine's nitrogen atom. On the basis of density functional calculations, we suggest that in water the proton transfer process to the pyridine's nitrogen atom occurs in a stepwise manner via a two water molecule bridge.

It is reported that spiropyran-a widely investigated molecular photoswitch-can be stabilized in aqueous environments in the presence of a variety of proteins, including human serum albumin, insulin fibrils, lysozyme, and glucose oxidase. The optical properties of the complexed photoswitch are protein dependent, with human serum albumin providing the spiropyran with emission features previously observed for a photoswitch confined in media of high viscosity. Despite being bound to the protein molecules, spiropyran can undergo a ring-opening reaction upon exposure to UV light. This photoisomerization process can affect the properties of the proteins: here, it is shown that the electrical conduction through human serum albumin to which the spiropyran is bound increases following the ring-opening reaction., (© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

The photoprotolytic processes of 7-hydroxy-coumarin (Umb) were investigated by steady-state and time-resolved-fluorescence techniques. We found that the Umb compound is a photoacid with pK(a)* ≈ 0.4 and a rate constant of the excited-state proton transfer (ESPT) to water of 2 × 10(10) s(-1). Umb is also a photobase and accepts an excess proton in solution and also directly from weak acids like acetic acid. When Umb is adsorbed on cellulose it also functions as a photoacid and a photobase. Hydroxycoumarins are known to accumulate next to fungal-, bacterial-, and viral-infected regions in the leaves and stems of plants in general and also in trees. We propose that these compounds when irradiated by sunlight UV, combat the fungi or bacteria by excited-state proton-transfer reactions. These photoprotolytic reactions provide a universal resistance mechanism to infections in plants.

Steady-state and time-resolved fluorescence techniques were employed to study the photophysics and photochemistry of trans-resveratrol. trans-Resveratrol is found in large quantities in fungi-infected grapevine-leaf tissue and plays a direct role in the resistance to plant disease. We found that trans-resveratrol in liquid solution undergoes a trans-cis isomerization process in the excited state at a rate that depends partially on the solvent viscosity, as was found in previous studies on trans-stilbene. The hydroxyl groups of the phenol moieties in resveratrol are weak photoacids. In water and methanol solutions containing weak bases such as acetate, a proton is transferred to the base within the lifetime of the excited state. When resveratrol is adsorbed on cellulose (also a component of the plant's cell wall), the cis-trans process is slow and the lifetime of the excited state increases from several tens of picoseconds in ethanol to about 1.5 ns. Excited-state proton transfer occurs when resveratrol is adsorbed on cellulose and acetate ions are in close proximity to the phenol moieties. We propose that proton transfer from excited resveratrol to the fungus acid-sensing chemoreceptor is one of the plant's resistance mechanisms to fungal infection.

Intramolecular proton-transfer dynamics in the lowest excited state (ESIHT) were studied in the natural product quercetin. We found that in all seven solvents used in this study, the ESIHT rate is ultrafast. We estimate that the ESIHT rate is about 70 fs or less. We found that in deuterated protic solvents, such as methanol-d or ethanol-d, the ESIHT rate is slower and the proton-transfer time constant is about 110 fs. The tautomeric form fluorescence quantum yield of quercetin is very low, of the order of the normal form.

Steady-state and time-resolved fluorescence techniques were employed to study the excited-state proton transfer (ESPT) from a photoacid adsorbed on starch to a nearby water molecule. Starch is composed of ∼30% amylose and ∼70% amylopectin. We found that the ESPT rate of adsorbed 8-hydroxy-1,3,6-pyrenetrisulfonate (HPTS) on starch arises from two time constants of 300 ps and ∼3 ns. We explain these results by assigning the two different ESPT rates to HPTS adsorbed on amylose and on amylopectin. When adsorbed on amylose, the ESPT rate is ∼3 × 10(9 )s(-1), whereas on amylopectin, it is only ∼3 × 10(8) s(-1).

Significant research efforts have been dedicated to the integration of biological species with electronic elements to yield smart bioelectronic devices. The integration of DNA, proteins, and whole living cells and tissues with electronic devices has been developed into numerous intriguing applications. In particular, the quantitative detection of biological species and monitoring of biological processes are both critical to numerous areas of medical and life sciences. Nevertheless, most current approaches merely focus on the "monitoring" of chemical processes taking place on the sensing surfaces, and little efforts have been invested in the conception of sensitive devices that can simultaneously "control" and "monitor" chemical and biological reactions by the application of on-surface reversible stimuli. Here, we demonstrate the light-controlled fine modulation of surface pH by the use of photoactive molecularly modified nanomaterials. Through the use of nanowire-based FET devices, we showed the capability of modulating the on-surface pH, by intensity-controlled light stimulus. This allowed us simultaneously and locally to control and monitor pH-sensitive biological reactions on the nanodevices surfaces, such as the local activation and inhibition of proteolytic enzymatic processes, as well as dissociation of antigen-antibody binding interactions. The demonstrated capability of locally modulating the on-surface effective pH, by a light stimuli, may be further applied in the local control of on-surface DNA hybridization/dehybridization processes, activation or inhibition of living cells processes, local switching of cellular function, local photoactivation of neuronal networks with single cell resolution and so forth.

Time-resolved measurements of photoinduced reactions reveal that many ultrafast reactions in the femto- to picosecond time scale are nonexponential. In this article we provide several examples of reactions that exhibit a nonexponential rate. We explain the wide range of the nonexponential reaction by the lack of time separation between τ(s), the characteristic fast equilibration time of the population in the reactant potential well, and the longer time τ(e), the characteristic time to cross the energy barrier between the reactant and the product.

Time-resolved and steady-state florescence measurements were used to study the photoprotolytic process of an adsorbed photoacid on cellulose and chitin. For that purpose we used the 8-hydroxy-1,3,6-pyrenetrisulfonate (HPTS) photoacid which transfers a proton to water with a time constant of 100 ps, but is incapable of doing so in methanol or ethanol. We found that both biopolymers accept a proton from the electronically excited acidic ROH form of HPTS. The excited-state proton-transfer (ESPT) rate of HPTS adsorbed on chitin is greater than that on cellulose by a factor of 5. The ESPT on chitin also occurs in the presence of methanol or ethanol, but at a slower rate. The transferred protons can recombine efficiently with the conjugate excited base, the RO(-) form of HPTS.

In this article, we review the field of photoacids. The rate of excited-state proton transfer (ESPT) to solvent spans a wide range of time scales, from tens of nanoseconds for the weakest photoacids to short time scales of about 100 fs for the strongest photoacids synthesized so far. We divide the photoacid strength into four regimes. Regime I includes the weak photoacids 0 < pKa* < 3. These photoacids can transfer a proton only to water or directly to a mild-base molecule in solution. The ESPT rate to other protic solvents, like methanol or ethanol, is too small in comparison with the radiative rate. The second regime includes stronger photoacids whose pKa*'s range from -4 to 0. They are capable of transferring a proton to other protic solvents and not only to water. The third regime includes even stronger photoacids. Their pKa* is ∼ -6, and the ESPT rate constant, kPT, is limited by the orientational time of the solvent which is characterized by the average solvation correlation function ⟨S(t)⟩. The fourth regime sets a new time limit for the ESPT rate of the strongest photoacids synthesized so far. The kPT value of such photoacids is 10(13) s(-1), and τPT = 100 fs. We attribute this new time limit (beyond the solvent control) to intermolecular vibration between the two heavy atoms of the proton donor and the proton acceptor, which assist the ESPT by lowering the height and width of the potential barrier, thus enhancing the ESPT rate.

The main features of the photoinduced kinetics of both ultrafast excited-state proton and electron transfer reactions that occur in the picosecond (ps) and femtosecond (fs) time domains are compared. Proton transfer (PT) reaction kinetics can be described in terms of several discrete values of rate coefficients in the form of polyexponential functions where each value of the rate coefficient can be attributed to a definite physical behavior of the reaction mechanism. In contrast, electron transfer (ET) reaction kinetics requires a consideration of a continuous distribution of rate coefficients. This difference can be related to structure of the ground-state reactant pairs for each reaction. Excited-state ET can occur at various configurations of reactant molecules and its rate reflects the fluctuations of the distances and orientations of these molecules. In contrast, excited-state PT requires preliminary formation of a ground-state H-bonded complex with definite structure where the reaction occurs after photoexcitation.

Reversible protonation (deprotonation) of a side-group is a useful and convenient way to affect the reactivity of large organic and biological molecules. We use bifunctional photoacids to demonstrate how the protonation state of a basic side-group (COO(-)) controls the reactivity of the main acidic group of the photoacid (OH), both in the ground and the electronic excited state of 6-carboxy derivatives of 2-naphthol.

UV-vis steady-state and time-resolved techniques were employed to study the excited-state proton-transfer process from two weak photoacids positioned next to the surface of chitosan and cellulose. Both chitosan and cellulose are linear polysaccharides; chitosan is composed mainly of d-glucosamine units. In order to overcome the problem of the high basicity of the glucosamine, we chose 2-naphthol (pKa* ≈ 2.7) and 2-naphthol-6-sulfonate (pKa* ≈ 1.7) as the proton emitters because of their ground state pKa (≈9). Next to the 1:1 cellulose:water weight ratio, the ESPT rate of these photoacids is comparable to that of bulk water. We found that the ESPT rate of 2-naphthol (2NP) and 2-naphthol-6-sulfonate (2N6S) next to chitosan in water (1:1) weight ratio samples is higher than in bulk water by a factor of about 5 and 2, respectively. We also found an efficient ESPT process that takes place from these photoacids in the methanol environment next to the chitosan scaffold, whereas ESPT is not observed in methanolic bulk solutions of these photoacids. We therefore conclude that ESPT occurs from these photoacids to the d-glucosamine units that make up chitosan.

The interaction between a photoacid (8-hydroxy-1,3,6-pyrenetrisulfonate, HPTS) and the surfaces of biomaterials and the diffusion of protons along the biomaterial surfaces were examined by following the excited-state proton transfer (ESPT) from the photoacid, adsorbed on the surfaces, to water molecules next to it. We chose two different types of biomaterial surfaces, hydrophobic insulin amyloid fibrils and hydrophilic cellulose surfaces. With the help of steady-state and time-resolved fluorescence techniques, we found that the rate of ESPT from HPTS on insulin fibrils to adjacent water molecules is about 1/10 that in bulk water. However, the proton geminate recombination takes place with an efficiency similar to that in bulk water. ESPT from HPTS in wet cellulose to water depends on the weight percentage of water adsorbed by the cellulose. In a semidry sample (<100% weight percentage of water), the ESPT rate is rather low and thus the quantum efficiency of the ESPT is also low within the excited-state lifetime. When the water content is higher, the ESPT rate is almost that of bulk water. We explain these results by the existence of pools of water in cellulose of high water content, in which the triple-negatively charged HPTS molecules desorb from the cellulose surface to these pools. The use of HPTS has allowed us to examine the biological surface and its interaction with water molecules, while obtaining important information regarding the hydration state of the surface that otherwise could not have been obtained. The model that we propose here for the use of photoacids to follow the hydrated state of a given surface is a promising new method of examining the interaction of water molecules with biological surfaces.

Steady-state and time-resolved emission techniques were used to study the fluorescence properties of two molecular rotors, thioflavin-T and auramine-O adsorbed on cellulose powder. Molecular rotors are known for their weak fluorescence intensity and short fluorescence lifetime when dissolved in liquids of low viscosity. We found that these molecular-rotor molecules when adsorbed on cellulose exhibit a rather strong steady-state fluorescence spectrum as well as long emission lifetime. We explain these results by the inhibition of segmental intramolecular rotation when these molecules are adsorbed on cellulose.

Steady-state and time-resolved optical techniques were employed to study the photoprotolytic mechanism of a general photoacid. Previously, a general scheme was suggested that includes an intermediate product that, up until now, had not been clearly observed experimentally. For our study, we used quinone cyanine 7 (QCy7) and QCy9, the strongest photoacids synthesized so far, to look for the missing intermediate product of an excited-state proton transfer to the solvent. Low-temperature steady-state emission spectra of both QCy7 and QCy9 clearly show an emission band at T < 165 K in H2O ice that could be assigned to ion-pair RO(-)*···H3O(+), the missing intermediate. Room-temperature femtosecond pump-probe spectroscopy transient spectra at short times (t < 4 ps) also shows the existence of transient absorption and emission bands that we assigned to the RO(-)*···H3O(+) ion pair. The intermediate dissociates on a time scale of 1 ps and about 1.5 ps in H2O and D2O samples, respectively.

Mutations near the fluorescing chromophore of the green fluorescent protein (GFP) have direct effects on the absorption and emission spectra. Some mutants have significant band shifts and most of the mutants exhibit a loss of fluorescence intensity. In this study we continue our investigation of the factors controlling the excited state proton transfer (PT) process of GFP, in particular to study the effects of modifications to the key side chain Ser205 in wt-GFP, proposed to participate in the proton wire. To this aim we combined mutagenesis, X-ray crystallography, steady-state spectroscopy, time-resolved emission spectroscopy and all-atom explicit molecular dynamics (MD) simulations to study the double mutant T203V/S205A. Our results show that while in the previously described GFP double mutant T203V/S205V the PT process does not occur, in the T203V/S205A mutant the PT process does occur, but with a 350 times slower rate than in wild-type GFP (wt-GFP). Furthermore, the kinetic isotope effect in the GFP double mutant T203V/S205A is twice smaller than in the wt-GFP and in the GFP single mutant S205V, which forms a novel PT pathway. On the other hand, the crystal structure of GFP T203V/S205A does not reveal a viable proton transfer pathway. To explain PT in GFP T203V/S205A, we argue on the basis of the MD simulations for an alternative, novel proton-wire pathway which involves the phenol group of the chromophore and water molecules infrequently entering from the bulk. This alternative pathway may explain the dramatically slow PT in the GFP double mutant T203V/S205A compared to wt-GFP.

Steady-state and time-resolved techniques were employed to study the excited-state proton-transfer (ESPT) rate of two newly synthesized 8-hydroxy-1,3,6-pyrenetrisulfonate (pyranine, HPTS) derived photoacids in three protic solvents, water, methanol and ethanol. The ESPT rate constant k(PT) of tris(1,1,1,3,3,3-hexafluoropropan-2-yl)-8-hydroxypyrene-1,3,6-trisulfonate, 1a, whose pK(a)* ~ -4, in water, methanol and ethanol is 3 × 10(11) s(-1), 8 × 10(9) s(-1) and 5 × 10(9) s(-1) respectively. (8-Hydroxy-N1,N3,N6-tris(2-hydroxyethyl)-N1,N3,N6-trimethylpyrene-1,3,6 trisulfonamide, 1b) is a weaker acid than 1a but still a strong photoacid with pK(a)* ~ -1 and the ESPT rate in water, methanol and ethanol is 7 × 10(10) s(-1), 4 × 10(8) s(-1) and 2 × 10(8) s(-1). We qualitatively explain our kinetic results by a Marcus-like free-energy correlation which was found to have a general form suitable for describing proton transfer reactions in both the proton-adiabatic and the proton-non-adiabatic limits.

Femtosecond UV-vis pump-probe spectroscopy was employed to study the acid effect on curcumin in the excited state. Curcumin in solutions of weak acids was found to be a photobase forming a protonated curcumin within a few tens of picoseconds from the time of excitation. The excited-state protonation reaction is also observed in the steady-state emission spectrum as a new red emission band with a maximum at 620 nm in the presence of weak acids. The transient pump-probe spectrum consists of four spectral bands, two emission bands, and two absorption bands. We assign a transient absorption band at ∼600 nm and an emission band at ∼540 nm to the neutral ROH form of curcumin. An absorption band at ∼500 nm and an emission band at 620 nm are assigned to the protonated ROH2(+) form of curcumin.

Steady-state and time-resolved emission techniques were used to study the excited-state proton-transfer (ESPT) process of quinone cyanine 9 (QCy9) in solvent mixtures. We found that the ESPT rate from QCy9 in water/methanol mixtures is independent of the mixture composition and the rate constant is k(PT) ∼ 10(13) s(-1). In ethanol/trifluoroethanol (TFE) mixtures the ESPT rate strongly depends on the solvent-mixture composition. We observe two ESPT rates rather than one over a wide range of solvent-mixture compositions. The average ESPT rate decreases as the mole fraction of TFE increases.

Steady-state and time-resolved emission techniques were employed to study the acid-base effects on the UV-vis spectrum of curcumin in several organic solvents. The fluorescence-decay rate of curcumin increases with increasing acid concentration in all of the solvents studied. In methanol and ethanol solutions containing about 1 M HCl, the short-wavelength fluorescence (λ < 560 nm) decreases by more than an order of magnitude. (The peak fluorescence intensity of curcumin in these solvents is at 540 nm.) At longer wavelengths (λ ≥ 560 nm) the fluorescence quenching is smaller by a factor of ∼3. A new fluorescence band with a peak at about 620 nm appears at an acid concentration of about 0.2 M in both methanol and ethanol. The 620 nm/530 nm band intensity ratio increases with an increase in the acid concentration. In trifluoroethanol and also in acetic acid in the presence of formic acid, the steady-state emission of curcumin shows an emission band at 620 nm. We attribute this new emission band in hydrogen-bond-donating solvents to a protonated curcumin ROH2(+) form. At high acid concentrations in acetic acid and in trifluoroethanol, the ground state of curcumin is also transformed to ROH2(+) which absorbs at longer wavelengths with a band peak at ∼530 nm compared to 420 nm in neutral-pH samples or 480 nm in basic solutions. In hydrogen-bond-accepting solvents such as dimethyl sulfoxide and also in methanol and ethanol, curcumin does not accept a proton to form the ground-state ROH2(+)

The oxyluciferin family of fluorophores has been receiving much attention from the research community and several systematic studies have been performed in order to gain more insight regarding their photophysical properties and photoprotolytic cycles. In this minireview, we summarize the knowledge obtained so far and define several possible lines for future research. More importantly, we analyze the impact of the discoveries on the firefly bioluminescence phenomenon made so far and explain how they re-open again the discussion regarding the identity (keto or enol species) of the bioluminophore., (Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

To study the dynamics and mechanisms of the proton wire of wild type green fluorescence protein (wt-GFP) and its S205V mutant, we applied molecular dynamics (MD) simulations and compared the results with the X-ray structures of both proteins and with the proton transfer kinetics of these proteins studied by the time-resolved emission technique. The MD simulations for the wt-GFP show that, in the proton wire, the Ser205 exists in two conformations with similar probabilities. One conformation supports the proton transfer, and the other does not. The fluctuation between the two conformers is relatively slow. This result may explain the time-resolved emission spectrum's long-time fluorescence tail of the wt-GFP chromophore's protonated form. The MD simulations of the S205V mutant show that the water molecule in the proton wire is replaced by other bulk water molecules along the simulations of 60 ns. Furthermore, as in the wt-GFP, the Thr203 also exists in two conformations in which only one conformation supports the proton transfer. These two findings give an insight into the relatively slow proton transfer rate in the S205V mutant in comparison to the wt-GFP.

Firefly oxyluciferin presents a pH-sensitive fluorescence in aqueous solutions. Its fluorescence spectra are composed of two green peaks at different pH values, despite the enolate anion being the only emitter. A computational approach was used to further elucidate the photoprotolytic cycle of oxyluciferin and investigate its pH sensitivity. It was found that oxyluciferin forms π-π stacking complexes both in the ground and excited states, at basic and acidic/neutral pH. However, at different pH values, these complexes adopt a different conformation, which explains the lower energy of the emission at acidic/neutral pH, in comparison with the emission at basic pH., (Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

The results of the steady-state and time-resolved fluorescence-spectroscopy measurements and DFT calculations for trans-[4-(4'-dimethylaminostyryl)] pyridine N-oxide (trans-DPO) in various solvents are presented. These results are similar to those reported in the literature for trans-4-(dimethylamino)-4'-cyanostilbene (DCS) where the S1 emissive state shows the charge-transfer (CT) nature. Alcohol solvents, however, have aroused our particular interest because hydrogen-bonded complexes are formed between them and the trans-DPO molecule. They demonstrate a stronger CT character of the lower lying excited state and a larger separation between the first and the second absorption band than in the free trans-DPO molecule. The different effects found in time-dependent femtosecond up-conversion (performed for several emission wavelengths in dioxane and methanol solution over the time range 0-40 ps) were assigned to the hydrogen bond assisted charge transfer process in trans-DPO in methanol, to the excited-state solvation dynamics and mainly to solvent relaxation of trans-DPO dissolved in dioxane and methanol.

Steady-state and time-resolved fluorescence techniques were used to study the temperature dependence of the photoprotolytic process of quinone-cyanine-7 (QCy7), a very strong photoacid, in H2O and D2O ice, over a wide temperature range, 85-270 K. We found that the excited-state proton-transfer (ESPT) rate to the solvent decreases as the temperature is lowered with a very low activation energy of 10.5 ± 1 kJ/mol. The low activation energy is in accord with free-energy-correlation theories that predict correlation between ΔG of reaction and the activation energy. At very low temperatures (T < 150 K), we find that the emission band of the RO(-)*, the deprotonated form of QCy7, is blue-shifted by ~1000 cm(-1). We attributed this band to the RO(-)*···H3O(+) ion pair that was suggested to be an intermediate in the photoprotolytic process but has not yet been identified spectroscopically.

Time-resolved emission of aloesaponarin I was studied with the fluorescence up-conversion and time-correlated single-photon-counting techniques. The rates of the excited-state intramolecular proton transfer, of the solvent and molecular rearrangements, and of the decay from the excited proton-transferred species were determined and interpreted in the light of time-dependent density functional calculations. These results were discussed in conjunction with UV protection and singlet-oxygen quenching activity of aloe.

Steady-state and ultrafast time-resolved techniques were used to study a newly synthesized photoacid, phenol-carboxyether dipicolinium cyanine dye, QCy9. We found that the excited-state proton transfer (ESPT) to water occurs at the remarkably short time of about 100 fs, k(PT) ≈ 1 × 10(13) s(-1), the fastest rate reported up to now. On the basis of the Förster-cycle, the pK(a)* value is estimated to be -8.5 ± 0.4. In previous studies, we reported the photoacidity of another superphotoacid, the QCy7 for which we found an ESPT rate constant of ~1.25 × 10(12) s(-1), one-eighth that of the QCy9 compound. We found a kinetic isotope effect of the ESPT of about two.

Both auramine-O (AuO) and thioflavin-T (ThT) behave as fluorescent molecular rotors, meaning that their (non)radiative properties are markedly affected by the intramolecular rotation of the molecule. In this article, steady-state and time-resolved fluorescence of AuO and ThT were measured in three alcohols, 1-propanol, 1-butanol, and 1-pentanol, over a wide range of temperatures (86-260 K). These solvents are glass-forming liquids, and their viscosity and dielectric relaxation time increase by more than 10 orders of magnitude as the temperature is lowered from room temperature to ~100 K. Accordingly, the fluorescence nonradiative rates constants of AuO and ThT in these solvents decrease by about 3 orders of magnitude at the latter temperature range. We found very good correspondence between the temperature dependence of the nonradiative rate constant, k(nr), of both molecules and the dielectric relaxation rate of the solvents. The k(nr) values of AuO are twice those of ThT along the whole temperature range. The temperature dependence of k(nr) is consistent with the nonradiative model suggested by Glasbeek and co-workers.

There is an indispensable need for a fluorescence marker for the detection of amyloid fibrils, where, at present, the most used marker is thioflavin-T (ThT). Here, we present the use of auramine-O (AuO) as a possible alternative to ThT. As with ThT, the increase in the emission of AuO upon binding to amyloid fibrils is the result of inhibition of the free rotation of the two dimethylamino arms of the molecule. This inhibition prevents the excited-state electronic wave function from moving from the emissive locally excited state to the dark charge-transfer state. We further show that not only AuO is comparable to ThT as a fluorescent marker for amyloid fibrils but also it has a unique spectroscopic signature. AuO has distinct two modes that are characterized by a large shift in the absorption and emission peak positions between its unbound and bound states (before and after the fibrils formation, respectively). In this context, we show that, whereas the emission band position is red-shifting, the absorption peak shifts to the blue and the spectrum exhibits an isosbestic point. The large shifts in emission and absorption peak positions can be explained by the photoacid activity of AuO exhibiting an excited-state proton-transfer process.

Steady-state and time-resolved emission techniques were used to study the protolytic processes in the excited state of dehydroluciferin, a nonbioluminescent product of the firefly enzyme luciferase. We found that the ESPT rate coefficient is only 1.1 × 10(10) s(-1), whereas those of d-luciferin and oxyluciferin are 3.7 × 10(10) and 2.1 × 10(10) s(-1), respectively. We measured the ESPT rate in water-methanol mixtures, and we found that the rate decreases nonlinearly as the methanol content in the mixture increases. The deprotonated form of dehydroluciferin has a bimodal decay with short- and long-time decay components, as was previously found for both D-luciferin and oxyluciferin. In weakly acidic aqueous solutions, the deprotonated form's emission is efficiently quenched. We attribute this observation to the ground-state protonation of the thiazole nitrogen, whose pK(a) value is ~3.

Thioflavin-T (ThT) can bind to amyloid fibrils and is frequently used as a fluorescent marker for in vitro biomedical assays of the potency of inhibitors for amyloid-related diseases, such as Alzheimer's disease, Parkinson's disease, and amyloidosis. Upon binding to amyloid fibrils, the steady-state (time-integrated) emission intensity of ThT increases by orders of magnitude. The simplicity of this type of measurement has made ThT a common fluorescent marker in biomedical research over the last 50 years. As a result of the remarkable development in ultrafast spectroscopy measurements, researchers have made substantial progress in understanding the photophysical nature of ThT. Both ab initio quantum-mechanical calculations and experimental evidence have shown that the electronically excited-state surface potential of ThT is composed of two regimes: a locally excited (LE) state and a charge-transfer (CT) state. The electronic wave function of the excited state changes from the initial LE state to the CT state as a result of the rotation around a single C-C bond in the middle of the molecule, which connects the benzothiazole moiety to the dimethylanilino ring. This twisted-internal-CT (TICT) is responsible for the molecular rotor behavior of ThT. This Account discusses several factors that can influence the LE-TICT dynamics of the excited state. Solvent, temperature, and hydrostatic pressure play roles in this process. In the context of biomedical assays, the binding to amyloid fibrils inhibits the internal rotation of the molecular segments and as a result, the electron cannot cross into the nonradiative "dark" CT state. The LE state has high oscillator strength that enables radiative excited-state relaxation to the ground state. This process makes the ThT molecule light up in the presence of amyloid fibrils. In the literature, researchers have suggested several models to explain nonradiative processes. We discuss the advantages and disadvantages of the various nonradiative models while focusing on the model that was initially proposed by Glasbeek and co-workers for auramine-O to be the best suited for ThT. We further discuss the computational fitting of the model for the nonradiative process of ThT.

Optical steady-state and time-resolved spectroscopic methods were used to study the photoprotolytic reaction of oxyluciferin, the active bioluminescence chromophore of the firefly's luciferase-catalyzed reaction. We found that like D-luciferin, the substrate of the firefly bioluminescence reaction, oxyluciferin is a photoacid with pK(a)* value of ∼0.5, whereas the excited-state proton transfer (ESPT) rate coefficient is 2.2 × 10(10) s(-1), which is somewhat slower than that of D-luciferin. The kinetic isotope effect (KIE) on the fluorescence decay of oxyluciferin is 2.5 ± 0.1, the same value as that of D-luciferin. Both chromophores undergo fluorescence quenching in solutions with a pH value below 3.

Steady-state and time-resolved emission techniques were used to study the photoprotolytic properties of three recently synthesized strong quinone cyanine photoacids (QCy7 and its sulfonated derivatives). The rate coefficient of the excited-state proton transfer (ESPT), k(PT), of the three dyes is roughly 1.5 × 10(12) s(-1), a high value that is comparable to the solvation dynamics rate of large polar organic molecules in H(2)O and D(2)O. It is twice as fast as the proton transfer rate between two adjacent water molecules in liquid water. We found that, as expected, two of the sulfonated photoacids geminately recombines with the proton at an elevated rate. The accelerated geminate recombination process of the sulfonated derivatives is different from a simple diffusion process of protons. The ESPT rate coefficient of these molecules is the highest recorded thus far.

The excited-state proton transfer (ESPT) reaction of the "super"photoacid N-methyl-6-hydroxyquinolinium (MHQ) was studied using both fluorescence upconversion and time-correlated single photon counting (TCSPC) techniques. The ultrafast ESPT kinetics were investigated in various alcohols and water and determined to be solvent-controlled. The ESPT temperature dependence of MHQ was also studied in various alcohols and compared to that observed for another "super"photoacid, 5,8-dicyano-2-naphthol (DCN2). A full set of kinetic and thermodynamic parameters describing the ESPT was obtained. The protolytic photodissociation rate constant for MHQ was higher than that for DCN2, while the ESPT activation energies of MHQ were smaller. These findings are attributed to the approximately 3 orders of magnitude differences in excited-state acidities of MHQ and DCN2.

The crystal structure of 2-butylamino-4-nitro-5-methyl pyridine N-oxide (2B5M) and solution studies of both 2B5M and 2-methylamino-4-nitro-5-methyl pyridine (2M5M) N-oxide are presented. Steady-state absorption and emission measurements were employed for both molecules while a picosecond fluorescence up-conversion technique was used to follow the dynamic behavior of the 2M5M system. The experimental methods were complemented by DFT and TD DFT B3LYP/6-31G(d,p) calculations involving ground and excited-state optimization which in the case of the smaller 2M5M molecule were extended to the CAM-B3LYP/6-31G(d,p) method. The solvent effect is incorporated by applying the polarizable continuum (PCM) model. The data reveal that the 2B5M molecule crystallizes in the monoclinic space group P2(1)/c and its crystal lattice is composed of monomers with intramolecular N-H···O [2.572(3) Å] hydrogen bonds, connected into a polymer network by weak intermolecular C-H…O [3.2-3.4 Å]-type interactions. Quantum-chemical calculations show that the aminoalkyl substitutent in aminoalkyl-pyridine N-oxides is a specific determinant of the CT nature of the lowest-lying excited electronic ππ* state, distinguishing them from other nitroaromatic compounds. The results of both picosecond fluorescence up-conversion experiments in different solvents and quantum-chemical calculations suggest that in nonpolar media the ESIPT process in 2M5M is favored, while in polar acetonitrile, the N* → PT* transition demands barrier-crossing and thus unfavorable thermodynamic conditions do not allow the ESIPT to occur. The signals of picosecond fluorescence up-conversion of 2M5M are solvent- and emission-wavelength dependent. The three time components found in a weakly polar isooctane-dioxane mixture have been attributed to solvation dynamics (∼500 fs), and to relaxation of N* and PT* forms while in acetonitrile, a very rapid fluorescence decay with a time constant (2.3-4.0 ps) indicative of the presence of the normal (N*) form was observed. Much shorter fluorescence lifetimes in alcohols (a few picoseconds) and in D(2)O (less than 200 fs) than in aprotic solvents suggest that in protic media, the solvent molecules participate in the ESIPT, bridging between the methylamine group and the N-oxide group of 2M5M.