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We present a multiscale modelling framework that integrates density functional theory (DFT) with a phase-field model (PFM) to explore the intricate dynamics of grain growth in nanocrystalline {\alpha}-Fe single-phase alloy in the presence of chromium (Cr) segregation. We begin our study by validating our simulation results for equilibrium segregation in stationary GB with Mclean isotherm. Polycrystal simulations featuring nanocrystalline grains at different temperatures reveal that the grain growth kinetics depends on the ratio of Cr diffusivity to intrinsic GB mobility. In the absence of segregation, the relationship between the square of average grain size (d 2 ) and time (t) demonstrates a linear correlation. We observe that the d 2 vs. t plot exhibits a consistent linear trend up to a threshold grain size, independent of Cr segregation at GB. However, when Cr is segregated at GB, a deviation from this linear trend with a decreasing slope is evident within the temperature range of 700K to 900K beyond the threshold size. This threshold grain size decreases with increasing temperature. Notably, at 1000K, the deviation from the linear trend is observed from the initial stages of grain growth with segregation, albeit with a linear trend exhibiting a smaller slope. We also present an analytical formulation based on Cahn solute drag theory to predict grain growth behaviour in the presence of solute segregation and our simulation results well aligned this analytical formulation.

The patch dynamics scheme in equation-free multiscale modelling can efficiently predict the macroscopic behaviours by simulating the microscale problem in a fraction of the space-time domain. The patch dynamics schemes developed so far, are mainly on rectangular domains with uniform grids and uniform rectangular patches. In real-life problems where the geometry of the domain is not regular or simple, rectangular and uniform grids or patches may not be useful. To address this kind of complexity, the concept of a generalized curvilinear coordinate system is used. An explicit representation of a patch dynamics scheme on a generalized curvilinear coordinate system in a two-dimensional domain is proposed for evolution equations. It has been applied to unsteady convection-diffusion-reaction (CDR) problems. The robustness of the scheme on the generalized curvilinear coordinate system is assessed through numerical test cases. Firstly, a convection-dominated CDR equation is considered, featuring high gradient regions in some part of the domain, for which stretched grids with non-uniform patch sizes are employed. Secondly, a non-axisymmetric diffusion equation is examined in an annulus region, where the patches have non-rectangular shapes. The results obtained demonstrate excellent agreement with the analytical solution or existing numerical solutions., Comment: 21 pages, 8 figures, 4 tables

Wild animals are commonly fitted with trackers that record their position through time, to learn about their behaviour. Broadly, statistical models for tracking data often fall into two categories: local models focus on describing small-scale movement decisions, and global models capture large-scale spatial distributions. Due to this dichotomy, it is challenging to describe mathematically how animals' distributions arise from their short-term movement patterns, and to combine data sets collected at different scales. We propose a multiscale model of animal movement and space use based on the underdamped Langevin process, widely used in statistical physics. The model is convenient to describe animal movement for three reasons: it is specified in continuous time (such that its parameters are not dependent on an arbitrary time scale), its speed and direction are autocorrelated (similarly to real animal trajectories), and it has a closed form stationary distribution that we can view as a model of long-term space use. We use the common form of a resource selection function for the stationary distribution, to model the environmental drivers behind the animal's movement decisions. We further increase flexibility by allowing movement parameters to be time-varying, e.g., to account for daily cycles in an animal's activity. We formulate the model as a state-space model and present a method of inference based on the Kalman filter. The approach requires discretising the continuous-time process, and we use simulations to investigate performance for various time resolutions of observation. The approach works well at fine resolutions, though the estimated stationary distribution tends to be too flat when time intervals between observations are very long.

The presented multi-scale, closed-loop blood circulation model includes arterial, venous, and portal venous systems, heart-pulmonary circulation, and micro-circulation in capillaries. One-dimensional models simulate large blood vessel flow, whereas zerodimensional models are used for simulating blood flow in vascular subsystems corresponding to peripheral arteries and organs. Transmission conditions at bifurcation and confluence are solved using Riemann invariants. Blood circulation simulation in the portal venous system and related organs (liver, stomach, spleen, pancreas, intestine) is particularly targeted. Those organs play important roles in metabolic system dynamics. The proposed efficient parallel algorithms for multicore environments solve these equations much faster than serial computations., Comment: 32 pages, 15 figures

The resulting microstructure after the sintering process determines many materials properties of interest. In order to understand the microstructural evolution, simulations are often employed. One such simulation method is the phase-field method, which has garnered much interest in recent decades. However, the method lacks a complete model for sintering, as previous works could show unphysical effects and the inability to reach representative volume elements. Thus the present paper aims to close this gap by employing molecular dynamics and determining rules of motion which can be translated to a phase-field model. The key realization is that vacancy absorption induced motion of grains travels through a grain structure without resistance. Hence the total displacement field of a green body is simply the superposition of all grains reacting in isolation to local vacancy absorption events. The resulting phase-field model is shown to be representative starting from particle counts between 97 and 262 and contains the qualitative correct dependence of sintering rate on particle size., Comment: 28 pages, 16 figures; with comments from reviewers incorporated

The local geometrical randomness of metal foams brings complexities to the performance prediction of porous structures. Although the relative density is commonly deemed as the key factor, the stochasticity of internal cell sizes and shapes has an apparent effect on the porous structural behaviour but the corresponding measurement is challenging. To address this issue, we are aimed to develop an assessment strategy for efficiently examining the foam properties by combining multiscale modelling and deep learning. The multiscale modelling is based on the finite element (FE) simulation employing representative volume elements (RVEs) with random cellular morphologies, mimicking the typical features of closed-cell Aluminium foams. A deep learning database is constructed for training the designed convolutional neural networks (CNNs) to establish a direct link between the mesoscopic porosity characteristics and the effective Youngs modulus of foams. The error range of CNN models leads to an uncertain mechanical performance, which is further evaluated in a structural uncertainty analysis on the FG porous three-layer beam consisting of two thin high-density layers and a thick low-density one, where the imprecise CNN predicted moduli are represented as triangular fuzzy numbers in double parametric form. The uncertain beam bending deflections under a mid-span point load are calculated with the aid of Timoshenko beam theory and the Ritz method. Our findings suggest the success in training CNN models to estimate RVE modulus using images with an average error of 5.92%. The evaluation of FG porous structures can be significantly simplified with the proposed method and connects to the mesoscopic cellular morphologies without establishing the mechanics model for local foams., Comment: Book chapter in MACHINE LEARNING AIDED ANALYSIS, DESIGN, AND ADDITIVE MANUFACTURING OF FUNCTIONALLY GRADED POROUS COMPOSITE STRUCTURES, 20 pages, 10 figures

How morphogenesis depends on cell properties is an active direction of research. Here, we focus on mechanical models of growing plant tissues, where microscopic (sub)cellular structure is taken into account. In order to establish links between microscopic and macroscopic tissue properties, we perform a multiscale analysis of a model of growing plant tissue with subcellular resolution. We use homogenization to rigorously derive the corresponding macroscopic tissue scale model. Tissue scale mechanical properties are computed from microscopic structural and material properties, taking into account deformation by the growth field. We then consider case studies and numerically compare the detailed microscopic model and the tissue-scale model, both implemented using finite element method. We find that the macroscopic model can be used to efficiently make predictions about several configurations of interest. Our work will help making links between microscopic measurements and macroscopic observations in growing tissues.

A multiscale mathematical model describing the genesis and ecology of algal-bacterial photogranules and the metals biosorption on their solid matrix within a sequencing batch reactor (SBR) is presented. The granular biofilm is modelled as a spherical free boundary domain with radial symmetry and a vanishing initial value. The free boundary evolution is governed by an ODE accounting for microbial growth, attachment and detachment phenomena. The model is based on systems of PDEs derived from mass conservation principles. Specifically, two systems of nonlinear hyperbolic PDEs model the growth of attached species and the dynamics of free adsorption sites; and two systems of quasi-linear parabolic PDEs govern the diffusive transport and conversion of nutrients and metals. The model is completed with systems of impulsive ordinary differential equations (IDEs) describing the evolution of dissolved substrates, metals, and planktonic and detached biomasses within the granular-based SBR. All main phenomena involved in the process are considered in the mathematical model. Moreover, the dual effect of metal presence on the formation process of photogranules is accounted: metal stimulates the production of EPS by sessile species and negatively affects the metabolic activities of microbial species. To describe the effects related to metal presence, a stimulation term for EPS production and an inhibition term for metal are included in all microbial kinetics. The model is used to examine the role of the microbial species and EPS in the adsorption process, and the effect of metal concentration and adsorption proprieties of biofilm components on the metal removal. Numerical results show that the model accurately describes the photogranules evolution and ecology and confirm the applicability of algal-bacterial photogranules systems for metal-rich wastewater treatment., Comment: 43 pages, 18 figures, preprint version

Numerical schemes for wave-like systems with small dissipation are often inaccurate and unstable due to truncation errors and numerical roundoff errors. Hence, numerical simulations of wave-like systems lacking proper handling of these numerical issues often fail to represent the physical characteristics of wave phenomena. This challenge gets even more intricate for multiscale modelling, especially in multiple dimensions. When using the usual collocated grid, about two-thirds of the resolved wave modes are incorrect with significant dispersion. But, numerical schemes on staggered grids (with alternating variable arrangement) are significantly less dispersive and preserve much of the wave characteristics. Also, the group velocity of the energy propagation in the numerical waves on a staggered grid is in the correct direction, in contrast to the collocated grid. For high accuracy and to preserve much of the wave characteristics, this article extends the concept of staggered grids in full-domain modelling to multidimensional multiscale modelling. Specifically, this article develops 120 multiscale staggered grids and demonstrates their stability, accuracy, and wave-preserving characteristic for equation-free multiscale modelling of weakly damped linear waves. But most characteristics of the developed multiscale staggered grids must also hold in general for multiscale modelling of many complex spatio-temporal physical phenomena such as the general computational fluid dynamics., Comment: 42 pages, 13 figures, and 1 table