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Copper (Cu) toxicity is a pressing concern for several soils, especially in organic viticulture. The objective of this work was to assess Cu toxicity on the non-target organism Eisenia fetida, employing both traditional and novel tools for early identification of Cu-induced damages. In addition to traditional tests like avoidance and reproductive toxicity experiments, other tests such as the single cell gel electrophoresis (SCGE) and gut microbiome analysis were evaluated to identify early and more sensitive pollution biomarkers. Four sub-lethal Cu concentrations were studied, and the results showed strong dose-dependent responses by the earthworm avoidance test and the exceeding of habitat threshold limit at the higher Cu doses. An inverse proportionality was observed between reproductive output and soil Cu concentration. Bioaccumulation was not detected in earthworms; soil concentrations of potentially bioavailable Cu were not affected by E. fetida presence or by time. On the contrary, the SCGE test revealed dose-dependent genotoxicity for the 'tail length' parameter already at the second day of Cu exposition. Gut microbiome analysis a modulation of microbial composition, with the most aboundant families being Pectobateriaceae, Comamonadaceae and Microscillaceae. Bacillaceae increased over time and showed adaptability to copper up to 165 mg/kg, while at the highest dose even the sensitive Acetobacteriaceae family was affected. The research provided new insights into the ecotoxicity of Cu sub-lethal doses highlighting both alterations at earthworms' cellular level and changes in their gut microbiota., (© 2024. The Author(s).)

The present study aimed to i) assess the disintegration of a novel bio-packaging during aerobic composting (2 and 6 % tested concentrations) and evaluate the resulting compost ii) analyse the ecotoxicity of bioplastics residues on earthworms; iii) study the microbial communities during composting and in 'earthworms' gut after their exposure to bioplastic residues; iv) correlate gut microbiota with ecotoxicity analyses; v) evaluate the chemico-physical characterisation of bio-packaging after composting and earthworms' exposure. Both tested concentrations showed disintegration of bio-packaging close to 90 % from the first sampling time, and compost chemical analyses identified its maturity and stability at the end of the process. Ecotoxicological assessments were then conducted on Eisenia fetida regarding fertility, growth, genotoxic damage, and impacts on the gut microbiome. The bioplastic residues did not influence the earthworms' fertility, but DNA damages were measured at the highest bioplastic dose tested. Furthermore bioplastic residues did not significantly affect the bacterial community during composting, but compost treated with 2 % bio-packaging exhibited greater variability in the fungal communities, including Mortierella, Mucor, and Alternaria genera, which can use bioplastics as a carbon source. Moreover, bioplastic residues influenced gut bacterial communities, with Paenibacillus, Bacillus, Rhizobium, Legionella, and Saccharimonadales genera being particularly abundant at 2 % bioplastic concentration. Higher concentrations affected microbial composition by favouring different genera such as Pseudomonas, Ureibacillus, and Streptococcus. For fungal communities, Pestalotiopsis sp. was found predominantly in earthworms exposed to 2 % bioplastic residues and is potentially linked to its role as a microplastics degrader. After composting, Attenuated Total Reflection analysis on bioplastic residues displayed evidence of ageing with the formation of hydroxyl groups and amidic groups after earthworm exposure., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)

The extensive employment of copper-based fungicides has increased copper concentration in vineyard soils. The present study's objectives were to monitor copper concentration in two vineyard soils during two cropping seasons and study the ecotoxicological effects on the earthworm Eisenia fetida . Total, soluble, and bioavailable copper fractions were measured at the end of two cropping seasons and different depths in two vineyards of central Italy, characterised by three anticryptogamic control methods: copper compounds, chitosan, and combined treatments of them. A laboratory experiment to assess the effects on Eisenia fetida was conducted with soil samples collected in the vineyards with a mean copper concentration of 60 mg/kg and two higher concentrations of 90 and 150 mg/kg. Results showed low levels of total copper concentration in the first 20 cm of soils, regardless of antifungal treatment, highlighting prudent management of the vineyards under study, but the soluble fractions showed a significant increase in all samples during the two cropping seasons. At the dose of 150 mg/kg, earthworms suffer during the first two days, showing weight loss and DNA damage, but they are able to recover until day 28, showing no permanent harm at this copper concentration in soil.

This review describes the researches performed in the last years to assess the impact of pesticide sub-lethal doses on soil microorganisms and non-target organisms in agricultural soil ecosystems. The overview was developed through the careful description and a critical analysis of three methodologies based on culture-independent approaches involving DNA extraction and sequencing (denaturing gradient gel electrophoresis, DGGE; next-generation sequencing, NGS) to characterize the microbial population and DNA damage assessment (comet assay) to determine the effect on soil invertebrates. The examination of the related published articles showed a continuous improvement of the possibility to detect the detrimental effect of the pesticides on soil microorganisms and non-target organisms at sub-lethal doses, i.e., doses which have no lethal effect on the organisms. Considering the overall critical discussion on microbial soil monitoring in the function of pesticide treatments, we can confirm the usefulness of PCR-DGGE as a screening technique to assess the genetic diversity of microbial communities. Nowadays, DGGE remains a preliminary technique to highlight rapidly the main differences in microbial community composition, which is able to give further information if coupled with culture-dependent microbiological approaches, while thorough assessments must be gained by high-throughput techniques such as NGS. The comet assay represents an elective technique for assessing genotoxicity in environmental biomonitoring, being mature after decades of implementation and widely used worldwide for its direct, simple, and affordable implementation. Nonetheless, in order to promote the consistency and reliability of results, regulatory bodies should provide guidelines on the optimal use of this tool, strongly indicating the most reliable indicators of DNA damage. This review may help the European Regulation Authority in deriving new ecotoxicological endpoints to be included in the Registration Procedure of new pesticides., (Copyright © 2020 Vischetti, Casucci, De Bernardi, Monaci, Tiano, Marcheggiani, Ciani, Comitini, Marini, Taskin and Puglisi.)

The phytoremediation potential of four crop species cultivated on carbonation lime coming from the sugar industry with water-soluble nickel (Ni) exceeding the Italian legal limit of 10 µg L -1 was assessed. Two autumn-winter species (spinach and canola) were tested with and without the addition of bentonite in a greenhouse experiment in order to overcome prolonged unfavourable weather conditions. Two spring-summer species (sunflower and sorghum) were grown in outdoor boxes. Plant species were selected among crops of interest for phytoremediation and their rotation throughout the year enable to maintain a permanent vegetation cover. Nickel concentration in different plant tissues and the concentrations of soluble and bioavailable Ni in lime were measured. In the greenhouse study, soluble Ni decreased below the legal limit in all the tests, and the combined effect of bentonite and plants reduced Ni in lime mainly in the bioavailable fraction. Spinach and sunflower emerged to be more suitable for phytoextraction than canola and sorghum, because of the higher concentration of the metal in the epigeal portions. The results from the outdoor experiment highlighted that sorghum has a good phytostabilisation potential since its ability to accumulate Ni mainly at the root level and to attract a significant amount of bioavailable Ni in the rhizosphere. This study arose from a real scenario of environmental contamination and investigated the potential of different approaches on the bioremediation of a specific industrial waste product.

A laboratory trial was performed to test the sequestration capacity of two minerals (bentonite and zeolite) at three initial concentrations (2.5, 5 and 10%) in order to counter water-soluble nickel (Ni) exceeding the Italian legal limit (10 μg L -1 ) in carbonation lime disposed of in a field and sampled for an 85-day lab study. The results show a noticeable reduction in water-soluble and bioavailable Ni in lime after the addition of sequestrants, especially at the dose of 5% bentonite or zeolite, thereby indicating a "ceiling effect" of the sequestrant, i.e., an increasing dose could reduce the adsorption capacity and be less effective. The alkaline pH and the presence of organic matter could be the main factors affecting the good performance of sequestrant addition, causing an increase in the negative charge of the organic and mineral colloids and the formation of unavailable Ni precipitates. The 85-day experiment seems to be sufficient to reach an adsorption equilibrium for water-soluble nickel, while for the bioavailable form a longer period appears to be necessary.

The role and distribution of iron (Fe) species in physical soil fractions have received remarkably little attention in field-scale systems. Here, we identify and quantify the Fe phases into two fractions (fine sand, FSa, and fine silt and clay, FSi + Cl), isolated from an agricultural soil unamended and amended with different organic materials, by Fe K-edge extended X-ray absorption fine structure (EXAFS) spectroscopy. The linear combination fitting and wavelet transform of EXAFS data revealed noticeable differences between unamended FSa and FSi + Cl fractions. Specifically, the FSi + Cl fraction was mainly characterized by ferrihydrite (48%) and Fe(III)-soil organic matter (SOM) complexes (37%), whereas in the FSa fraction, ferrihydrite still represented a major phase (44%), with a lower contribution from Fe(III)-SOM (18%). In the FSa fraction, the addition of the organic amendments resulted in an increase of Fe-SOM complexes (31-35%) and a decrease of ferrihydrite (28-29%). By contrast, in the amended FSi + Cl fractions, the added organic matter led to negligible changes in percent ferrihydrite. Therefore, regardless of the amendment type, the addition of organic matter to soil increased the capability of the coarse fraction (FSa) to stabilize organic carbon, thus pointing out that the role of FSa in carbon sequestration in agricultural soils at a global scale may be overlooked.

The paper reports the results of a laboratory test on the bioaccumulation and toxicological effects of sub-lethal soil concentration of copper, a widely used fungicide in organic farming, on DNA damage, a critical marker increasingly used in ecotoxicology in the earthworm Eisenia andrei. In the same experimental setting we evaluated gene expression of classical biomarker of stress induced by xenobiotic. [Heat Shock Protein 70 (HSP70) and Metallothionein (MET)], as well as genes coding for enzymes involved in detoxification of reactive oxygen species [Superoxide dismutase (SOD) and catalase (CAT)]. Additionally, expression of genes involved in the immune response were investigated: a Toll-like receptor (TLR), a receptor with cytolytic activity named Cytolytic Factor (CCF) and two antimicrobial peptides, fetidin (FET) and lysenin (LYS). Results showed significant time-dependent bioaccumulation of Cu and DNA damage at concentrations remarkably lower than those found in most agricultural soils worldwide. MET was increased as was FET and TLR. The present work gives new insights into the mechanisms of sub-lethal toxicity of copper as an environmental pollutant and in the identification of novel sub-lethal biomarkers of cellular response to the stressor such as immune response genes.

Physical fractionation methods used in soil organic matter (SOM) research commonly include density-based procedures with heavy liquids to separate SOM pools with varying turnover rates and functions. Once separated, the heavy SOM pools are often thoroughly rinsed with water to wash off any residues of the heavy liquids. Using four soils with contrasting properties, we investigated the effects of using either sodium polytungstate (SPT) or sodium iodide (NaI), two of the most commonly used heavy liquids, on the distribution of organic carbon (C) and total nitrogen (N) in free light, intra-aggregate light, and mineral-associated heavy SOM pools isolated by a common fractionation scheme. We also determined the effects of washing the mineral-associated heavy SOM fractions on the recovery of organic C and total N after separation. Because of its smaller viscosity compared to that of NaI, SPT consistently yielded greater intra-aggregate and smaller mineral-associated soil organic C contents. We also confirm that some commercial SPT products, such as the one used here, can contaminate organo-mineral heavy pools with N during density-based fractionation procedures. We do not recommend the repeated washing of heavy fractions separated with Na-based heavy liquids, as this can mobilize SOM.

Soil organic matter (SOM) protection, stability and long-term accumulation are controlled by several factors, including sorption onto mineral surfaces. Iron (Fe) has been suggested as a key regulator of SOM stability, both in acidic conditions, where Fe(III) is soluble, and in near-neutral pH environments, where it precipitates as Fe(III) (hydr)oxides. The present study aimed to probe, by sorption/desorption experiments in which Fe was added to the system, the mechanisms controlling Fe(III)-mediated organic carbon (C) stabilization; fine silt and clay (FSi + Cl) and fine sand (FSa) SOM fractions of three soils under different land uses were tested. Fe(III) addition caused a decrease in the organic C remaining in solution after reaction, indicating an Fe-mediated organic C stabilization effect. This effect was two times larger for FSa than for FSi + Cl, the former fraction being characterized by both low specific surface area and high organic C content. The organic C retained in the solid phase after Fe-mediated stabilization has relatively low sensitivity to desorption. Moreover, attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy indicated that Fe-mediated organic C stabilization can be mainly ascribed to the formation of complexes between carbohydrate OH functional groups and Fe oxides. These results demonstrate that the binding of labile SOM compounds to Fe(III) contributes to its preservation, and that the mechanisms involved (flocculation vs. coating) depend on the size fractions., (Copyright © 2018 Elsevier B.V. All rights reserved.)