890 results on '"Soukup K"'
Search Results
2. Interrogation of endothelial and mural cells in brain metastasis reveals key immune-regulatory mechanisms.
- Author
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Bejarano L, Kauzlaric A, Lamprou E, Lourenco J, Fournier N, Ballabio M, Colotti R, Maas R, Galland S, Massara M, Soukup K, Lilja J, Brouland JP, Hottinger AF, Daniel RT, Hegi ME, and Joyce JA
- Subjects
- Mice, Animals, Humans, Female, Brain metabolism, Transcription Factors metabolism, Tumor Microenvironment, B7 Antigens, Brain Neoplasms pathology, Melanoma, Breast Neoplasms pathology
- Abstract
Brain metastasis (BrM) is a common malignancy, predominantly originating from lung, melanoma, and breast cancers. The vasculature is a key component of the BrM tumor microenvironment with critical roles in regulating metastatic seeding and progression. However, the heterogeneity of the major BrM vascular components, namely endothelial and mural cells, is still poorly understood. We perform single-cell and bulk RNA-sequencing of sorted vascular cell types and detect multiple subtypes enriched specifically in BrM compared to non-tumor brain, including previously unrecognized immune regulatory subtypes. We integrate the human data with mouse models, creating a platform to interrogate vascular targets for the treatment of BrM. We find that the CD276 immune checkpoint molecule is significantly upregulated in the BrM vasculature, and anti-CD276 blocking antibodies prolonged survival in preclinical trials. This study provides important insights into the complex interactions between the vasculature, immune cells, and cancer cells, with translational relevance for designing therapeutic interventions., Competing Interests: Declaration of interests M.E.H. has an advisory role at TME Pharma., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
3. Immunogenomic analysis of human brain metastases reveals diverse immune landscapes across genetically distinct tumors
- Author
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Álvarez-Prado, Á.F., Maas, R.R., Soukup, K., Klemm, F., Kornete, M., Krebs, F.S., Zoete, V., Berezowska, S., Brouland, J.P., Hottinger, A.F., Daniel, R.T., Hegi, M.E., and Joyce, J.A.
- Subjects
T cells ,brain metastasis ,cancer immunology ,genomics ,immunogenomics ,microglia ,monocyte-derived macrophages ,neutrophils ,transcriptomics ,tumor microenvironment - Abstract
Brain metastases (BrMs) are the most common form of brain tumors in adults and frequently originate from lung and breast primary cancers. BrMs are associated with high mortality, emphasizing the need for more effective therapies. Genetic profiling of primary tumors is increasingly used as part of the effort to guide targeted therapies against BrMs, and immune-based strategies for the treatment of metastatic cancer are gaining momentum. However, the tumor immune microenvironment (TIME) of BrM is extremely heterogeneous, and whether specific genetic profiles are associated with distinct immune states remains unknown. Here, we perform an extensive characterization of the immunogenomic landscape of human BrMs by combining whole-exome/whole-genome sequencing, RNA sequencing of immune cell populations, flow cytometry, immunofluorescence staining, and tissue imaging analyses. This revealed unique TIME phenotypes in genetically distinct lung- and breast-BrMs, thereby enabling the development of personalized immunotherapies tailored by the genetic makeup of the tumors.
- Published
- 2023
4. CN66 Evolution of quality of life and symptoms in patients with lung cancer or melanoma during the first months of immune checkpoint blockade treatment
- Author
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Colomer-Lahiguera, S., primary, Guerra da Souza, A.C., additional, Darnac, C., additional, Soukup, K., additional, Marcone, R., additional, and Eicher, M., additional
- Published
- 2022
- Full Text
- View/download PDF
5. CN39 Development of a reference model for patient and public involvement in oncology research in French-speaking Switzerland
- Author
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Colomer-Lahiguera, S., primary, Corbière, T., additional, Soukup, K., additional, Reeb-Landry, F., additional, Addeo, A., additional, and Eicher, M., additional
- Published
- 2022
- Full Text
- View/download PDF
6. Noble metal catalysts supported on nanofibrous polymeric membranes for environmental applications
- Author
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Soukup, K., Topka, P., Hejtmánek, V., Petráš, D., Valeš, V., and Šolcová, O.
- Published
- 2014
- Full Text
- View/download PDF
7. Binderless zeolite coatings on macroporous α-SiC foams
- Author
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Losch, P., Boltz, M., Soukup, K., Song, I.-H., Yun, H.S., and Louis, B.
- Published
- 2014
- Full Text
- View/download PDF
8. Compromised Blood-Brain Barrier Junctions Enhance Melanoma Cell Intercalation and Extravasation.
- Author
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Saltarin F, Wegmüller A, Bejarano L, Ildiz ES, Zwicky P, Vianin A, Spadin F, Soukup K, Wischnewski V, Engelhardt B, Deutsch U, J Marques I, Frenz M, Joyce JA, and Lyck R
- Abstract
Melanoma frequently metastasises to the brain, and a detailed understanding of the molecular and cellular mechanisms underlying melanoma cell extravasation across the blood-brain barrier (BBB) is important for preventing brain metastasis formation. Making use of primary mouse brain microvascular endothelial cells (pMBMECs) as an in vitro BBB model, we imaged the interaction of melanoma cells into pMBMEC monolayers. We observed exclusive junctional intercalation of melanoma cells and confirmed that melanoma-induced pMBMEC barrier disruption can be rescued by protease inhibition. Interleukin (IL)-1β stimulated pMBMECs or PECAM-1-knockout (-ko) pMBMECs were employed to model compromised BBB barrier properties in vitro and to determine increased melanoma cell intercalation compared to pMBMECs with intact junctions. The newly generated brain-homing melanoma cell line YUMM1.1-BrM4 was used to reveal increased in vivo extravasation of melanoma cells across the BBB of barrier-compromised PECAM-1-deficient mice compared to controls. Taken together, our data indicate that preserving BBB integrity is an important measure to limit the formation of melanoma-brain metastasis.
- Published
- 2023
- Full Text
- View/download PDF
9. The local microenvironment drives activation of neutrophils in human brain tumors.
- Author
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Maas RR, Soukup K, Fournier N, Massara M, Galland S, Kornete M, Wischnewski V, Lourenco J, Croci D, Álvarez-Prado ÁF, Marie DN, Lilja J, Marcone R, Calvo GF, Santalla Mendez R, Aubel P, Bejarano L, Wirapati P, Ballesteros I, Hidalgo A, Hottinger AF, Brouland JP, Daniel RT, Hegi ME, and Joyce JA
- Abstract
Neutrophils are abundant immune cells in the circulation and frequently infiltrate tumors in substantial numbers. However, their precise functions in different cancer types remain incompletely understood, including in the brain microenvironment. We therefore investigated neutrophils in tumor tissue of glioma and brain metastasis patients, with matched peripheral blood, and herein describe the first in-depth analysis of neutrophil phenotypes and functions in these tissues. Orthogonal profiling strategies in humans and mice revealed that brain tumor-associated neutrophils (TANs) differ significantly from blood neutrophils and have a prolonged lifespan and immune-suppressive and pro-angiogenic capacity. TANs exhibit a distinct inflammatory signature, driven by a combination of soluble inflammatory mediators including tumor necrosis factor alpha (TNF-ɑ) and Ceruloplasmin, which is more pronounced in TANs from brain metastasis versus glioma. Myeloid cells, including tumor-associated macrophages, emerge at the core of this network of pro-inflammatory mediators, supporting the concept of a critical myeloid niche regulating overall immune suppression in human brain tumors., Competing Interests: Declaration of interests D.C. has received consulting fees from Seed Biosciences S.A.; P.W. has provided consulting for Almax, Bayer, Sanofi, and Genentech. A.H. is a paid consultor for Flagship Pioneering, Inc. for matters unrelated to this study; M.E.H. has an advisory role at TME Pharma; J.A.J. received an honorarium for speaking at a Bristol Meyers Squibb research symposium and previously served on the scientific advisory board of Pionyr Immunotherapeutics., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
- Full Text
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10. Engineering Application of Transport Characteristics
- Author
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Šolcová, O., Rogut, J., and Soukup, K.
- Subjects
porous solids ,Chemistry ,QD1-999 - Published
- 2013
11. Preparation and characterization of electrospun poly(p-phenylene oxide) membranes
- Author
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Soukup, K., Petráš, D., Topka, P., Slobodian, P., and Šolcová, O.
- Published
- 2012
- Full Text
- View/download PDF
12. Phenotypic diversity of T cells in human primary and metastatic brain tumors revealed by multiomic interrogation.
- Author
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Wischnewski V, Maas RR, Aruffo PG, Soukup K, Galletti G, Kornete M, Galland S, Fournier N, Lilja J, Wirapati P, Lourenco J, Scarpa A, Daniel RT, Hottinger AF, Brouland JP, Losurdo A, Voulaz E, Alloisio M, Hegi ME, Lugli E, and Joyce JA
- Subjects
- Humans, Multiomics, Brain, Immunotherapy, T-Lymphocytes, Brain Neoplasms secondary
- Abstract
The immune-specialized environment of the healthy brain is tightly regulated to prevent excessive neuroinflammation. However, after cancer development, a tissue-specific conflict between brain-preserving immune suppression and tumor-directed immune activation may ensue. To interrogate potential roles of T cells in this process, we profiled these cells from individuals with primary or metastatic brain cancers via integrated analyses on the single-cell and bulk population levels. Our analysis revealed similarities and differences in T cell biology between individuals, with the most pronounced differences observed in a subgroup of individuals with brain metastasis, characterized by accumulation of CXCL13-expressing CD39
+ potentially tumor-reactive T (pTRT) cells. In this subgroup, high pTRT cell abundance was comparable to that in primary lung cancer, whereas all other brain tumors had low levels, similar to primary breast cancer. These findings indicate that T cell-mediated tumor reactivity can occur in certain brain metastases and may inform stratification for treatment with immunotherapy., (© 2023. The Author(s).)- Published
- 2023
- Full Text
- View/download PDF
13. Remediation of brownfields contaminated by organic compounds and heavy metals: a bench-scale test of a sulfur/vermiculite sorbent for mercury vapor removal.
- Author
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Topka P, Soukup K, Hejtmánek V, Hlásenský I, Kaštánek F, and Šolcová O
- Subjects
- Adsorption, Aluminum Silicates, Gases, Mercury, Sulfur
- Abstract
In this study, we report for the first time a novel type of sorbent that can be used for mercury adsorption from the air-based off-gasses-vermiculite impregnated with alkali polysulfides and thiosulfates. In contrast to other sorbents, vermiculite exhibits superior thermal stability in air and low adsorption capacity for organic vapors. This allows for a more favorable design of the soil remediation unit-direct coupling of thermal desorber with catalytic oxidizer using air as a carrier gas. In the bench-scale test at 180 °C, the sulfur/vermiculite sorbent exhibited significantly higher efficiency for the adsorption of mercury vapor from the off-gasses than the commercial sulfur/activated carbon sorbent at its highest operating temperature (120 °C). The average mercury concentration in the adsorber off-gas decreased from 1.634 mg/m
3 for the sulfur/activated carbon to 0.008 mg/m3 achieved with impregnated vermiculite. The total concentration of organic compounds in the soil after thermal desorption was below the detection limit of the employed analytical method.- Published
- 2020
- Full Text
- View/download PDF
14. Immunogenomic analysis of human brain metastases reveals diverse immune landscapes across genetically distinct tumors.
- Author
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Álvarez-Prado ÁF, Maas RR, Soukup K, Klemm F, Kornete M, Krebs FS, Zoete V, Berezowska S, Brouland JP, Hottinger AF, Daniel RT, Hegi ME, and Joyce JA
- Subjects
- Adult, Humans, Female, Immunotherapy, Tumor Microenvironment genetics, Brain Neoplasms genetics, Breast Neoplasms genetics, Breast Neoplasms pathology, Melanoma, Skin Neoplasms
- Abstract
Brain metastases (BrMs) are the most common form of brain tumors in adults and frequently originate from lung and breast primary cancers. BrMs are associated with high mortality, emphasizing the need for more effective therapies. Genetic profiling of primary tumors is increasingly used as part of the effort to guide targeted therapies against BrMs, and immune-based strategies for the treatment of metastatic cancer are gaining momentum. However, the tumor immune microenvironment (TIME) of BrM is extremely heterogeneous, and whether specific genetic profiles are associated with distinct immune states remains unknown. Here, we perform an extensive characterization of the immunogenomic landscape of human BrMs by combining whole-exome/whole-genome sequencing, RNA sequencing of immune cell populations, flow cytometry, immunofluorescence staining, and tissue imaging analyses. This revealed unique TIME phenotypes in genetically distinct lung- and breast-BrMs, thereby enabling the development of personalized immunotherapies tailored by the genetic makeup of the tumors., Competing Interests: Declaration of interests F.K. is currently an employee at Sophia Genetics; V.Z. is a consultant for Cellestia Biotech; S.B. has received honoraria from Eli Lilly (Advisory Board) and research funding to the institution from Roche and Basilea (last 3 years); M.E.H. has an advisory role at TME Pharma; J.A.J. has received honoraria for speaking at research symposia organized by Bristol Meyers Squibb and Glenmark Pharmaceuticals (last 3 years) and currently serves on the scientific advisory board of Pionyr Immunotherapeutics., (Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
15. Platinum Nanoparticles Immobilized on Electrospun Membranes for Catalytic Oxidation of Volatile Organic Compounds.
- Author
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Soukup K, Topka P, Kupčík J, and Solcova O
- Abstract
Structured catalytic membranes with high porosity and a low pressure drop are particularly suitable for industrial processes carried out at high space velocities. One of these processes is the catalytic total oxidation of volatile organic compounds, which is an economically feasible and environmentally friendly way of emission abatement. Noble metal catalysts are typically preferred due to high activity and stability. In this paper, the preparation of a thermally stable polybenzimidazole electrospun membrane, which can be used as a support for a platinum catalyst applicable in the total oxidation of volatile organic compounds, is reported for the first time. In contrast to commercial pelletized catalysts, high porosity of the membrane allowed for easy accessibility of the platinum active sites to the reactants and the catalytic bed exhibited a low pressure drop. We have shown that the preparation conditions can be tuned in order to obtain catalysts with a desired platinum particle size. In the gas-phase oxidation of ethanol, acetone, and toluene, the catalysts with Pt particle sizes 2.1 nm and 26 nm exhibited a lower catalytic activity than that with a Pt particle size of 12 nm. Catalysts with a Pt particle size of 2.1 nm and 12 nm were prepared by equilibrium adsorption, and the higher catalytic activity of the latter catalyst was ascribed to more reactive adsorbed oxygen species on larger Pt nanoparticles. On the other hand, the catalyst with a Pt particle size of 26 nm was prepared by a solvent evaporation method and contained less active polycrystalline platinum. Last but not least, the catalyst containing only 0.08 wt.% of platinum achieved high conversion (90%) of all the model volatile organic compounds at moderate temperatures (lower than 335 °C), which is important for reducing the costs of the abatement technology.
- Published
- 2023
- Full Text
- View/download PDF
16. Synthesis, Characterization, and Gas Adsorption Performance of Amine-Functionalized Styrene-Based Porous Polymers.
- Author
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Setnickova K, Jerabek K, Strasak T, Mullerova M, Jandova V, Soukup K, Petrickovic R, Tseng HH, and Uchytil P
- Abstract
In recent years, porous materials have been extensively studied by the scientific community owing to their excellent properties and potential use in many different areas, such as gas separation and adsorption. Hyper-crosslinked porous polymers (HCLPs) have gained attention because of their high surface area and porosity, low density, high chemical and thermal stability, and excellent adsorption capabilities in comparison to other porous materials. Herein, we report the synthesis, characterization, and gas (particularly CO
2 ) adsorption performance of a series of novel styrene-based HCLPs. The materials were prepared in two steps. The first step involved radical copolymerization of divinylbenzene (DVB) and 4-vinylbenzyl chloride (VBC), a non-porous gel-type polymer, which was then modified by hyper-crosslinking, generating micropores with a high surface area of more than 700 m2 g-1 . In the following step, the polymer was impregnated with various polyamines that reacted with residual alkyl chloride groups on the pore walls. This impregnation substantially improved the CO2 /N2 and CO2 /CH4 adsorption selectivity.- Published
- 2022
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17. Corrosion behavior of titanium silicide surface with hydrogen peroxide: Formation of sub-μm TiOx- based spheres, nanocomposite TiOx/SiOx phases, and mesoporous TiOx/SiOx network
- Author
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Jandová, V., primary, Fajgar, R., additional, Kupčík, J., additional, Pola, J., additional, Soukup, K., additional, Mikysek, P., additional, Křenek, T., additional, Kovářík, T., additional, Stich, T., additional, and Docheva, D., additional
- Published
- 2020
- Full Text
- View/download PDF
18. Multispectral fluorine-19 MRI enables longitudinal and noninvasive monitoring of tumor-associated macrophages.
- Author
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Croci D, Santalla Méndez R, Temme S, Soukup K, Fournier N, Zomer A, Colotti R, Wischnewski V, Flögel U, van Heeswijk RB, and Joyce JA
- Subjects
- Animals, Mice, Tumor-Associated Macrophages, Fluorine, Neoplasm Recurrence, Local, Tamoxifen, Tumor Microenvironment, Melanoma, Cutaneous Malignant, Fluorocarbons, Glioma diagnostic imaging, Myopathies, Structural, Congenital
- Abstract
High-grade gliomas, the most common and aggressive primary brain tumors, are characterized by a complex tumor microenvironment (TME). Among the immune cells infiltrating the glioma TME, tumor-associated microglia and macrophages (TAMs) constitute the major compartment. In patients with gliomas, increased TAM abundance is associated with more aggressive disease. Alterations in TAM phenotypes and functions have been reported in preclinical models of multiple cancers during tumor development and after therapeutic interventions, including radiotherapy and molecular targeted therapies. These findings indicate that it is crucial to evaluate TAM abundance and dynamics over time. Current techniques to quantify TAMs in patients rely mainly on histological staining of tumor biopsies. Although informative, these techniques require an invasive procedure to harvest the tissue sample and typically only result in a snapshot of a small region at a single point in time. Fluorine isotope 19 MRI (
19 F MRI) represents a powerful means to noninvasively and longitudinally monitor myeloid cells in pathological conditions by intravenously injecting perfluorocarbon-containing nanoparticles (PFC-NP). In this study, we demonstrated the feasibility and power of19 F MRI in preclinical models of gliomagenesis, breast-to-brain metastasis, and breast cancer and showed that the major cellular source of19 F signal consists of TAMs. Moreover, multispectral19 F MRI with two different PFC-NP allowed us to identify spatially and temporally distinct TAM niches in radiotherapy-recurrent murine gliomas. Together, we have imaged TAMs noninvasively and longitudinally with integrated cellular, spatial, and temporal resolution, thus revealing important biological insights into the critical functions of TAMs, including in disease recurrence.- Published
- 2022
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- View/download PDF
19. Agrowaste derived biochars impregnated with ZnO for removal of arsenic and lead in water
- Author
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Cruz, G.J.F., primary, Mondal, D., additional, Rimaycuna, J., additional, Soukup, K., additional, Gómez, M.M., additional, Solis, J.L., additional, and Lang, J., additional
- Published
- 2020
- Full Text
- View/download PDF
20. PI3K Signaling in Dendritic Cells Aggravates DSS-Induced Colitis.
- Author
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Kuttke M, Hromadová D, Yildirim C, Brunner JS, Vogel A, Paar H, Peters S, Weber M, Hofmann M, Kerndl M, Kieler M, Datler H, Musiejovsky L, Salzmann M, Lang M, Soukup K, Halfmann A, Sharif O, and Schabbauer G
- Subjects
- Animals, Dendritic Cells, Dextran Sulfate adverse effects, Disease Models, Animal, Interleukin-6 metabolism, Mice, Mice, Inbred C57BL, Phosphatidylinositol 3-Kinases metabolism, Signal Transduction, Colitis, Inflammatory Bowel Diseases
- Abstract
Aberrant innate immune responses to the gut microbiota are causally involved in the pathogenesis of inflammatory bowel diseases (IBD). The exact triggers and main signaling pathways activating innate immune cells and how they modulate adaptive immunity in IBD is still not completely understood. Here, we report that the PI3K/PTEN signaling pathway in dendritic cells enhances IL-6 production in a model of DSS-induced colitis. This results in exacerbated Th1 cell responses and increased mortality in DC-specific PTEN knockout (PTEN
ΔDC ) animals. Depletion of the gut microbiota using antibiotics as well as blocking IL-6R signaling rescued mortality in PTENΔDC mice, whereas adoptive transfer of Flt3L-derived PTEN-/- DCs into WT recipients exacerbated DSS-induced colitis and increased mortality. Taken together, we show that the PI3K signaling pathway in dendritic cells contributes to disease pathology by promoting IL-6 mediated Th1 responses., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Kuttke, Hromadová, Yildirim, Brunner, Vogel, Paar, Peters, Weber, Hofmann, Kerndl, Kieler, Datler, Musiejovsky, Salzmann, Lang, Soukup, Halfmann, Sharif and Schabbauer.)- Published
- 2022
- Full Text
- View/download PDF
21. Study of the adsorption of dyes employed in the food industry by activated carbon based on residual forestry
- Author
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Valladares, C, primary, Cruz, J F, additional, Matějová, L, additional, Herrera, E, additional, Gómez, M M, additional, Solís, J L, additional, Soukup, K, additional, Šolcová, O, additional, and Cruz, G J F, additional
- Published
- 2019
- Full Text
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22. Starch/chitosan/glycerol films produced from low-value biomass: effect of starch source and weight ratio on film properties
- Author
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Navarro, Y M, primary, Soukup, K, additional, Jandová, V, additional, Gómez, M M, additional, Solis, J L, additional, Cruz, J F, additional, Siche, R, additional, Šolcová, O, additional, and Cruz, G J F, additional
- Published
- 2019
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23. JAK1 signaling in dendritic cells promotes peripheral tolerance in autoimmunity through PD-L1-mediated regulatory T cell induction.
- Author
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Vogel A, Martin K, Soukup K, Halfmann A, Kerndl M, Brunner JS, Hofmann M, Oberbichler L, Korosec A, Kuttke M, Datler H, Kieler M, Musiejovsky L, Dohnal A, Sharif O, and Schabbauer G
- Subjects
- Animals, Autoimmunity, Dendritic Cells metabolism, Immune Tolerance, Mice, Peripheral Tolerance, B7-H1 Antigen immunology, B7-H1 Antigen metabolism, Encephalomyelitis, Autoimmune, Experimental, Janus Kinase 1 immunology, Janus Kinase 1 metabolism, T-Lymphocytes, Regulatory
- Abstract
Dendritic cells (DCs) induce peripheral T cell tolerance, but cell-intrinsic signaling cascades governing their stable tolerogenesis remain poorly defined. Janus Kinase 1 (JAK1) transduces cytokine-receptor signaling, and JAK inhibitors (Jakinibs), including JAK1-specific filgotinib, break inflammatory cycles in autoimmunity. Here, we report in heterogeneous DC populations of multiple secondary lymphoid organs that JAK1 promotes peripheral T cell tolerance during experimental autoimmune encephalomyelitis (EAE). Mice harboring DC-specific JAK1 deletion exhibit elevated peripheral CD4
+ T cell expansion, less regulatory T cells (Tregs), and worse EAE outcomes, whereas adoptive DC transfer ameliorates EAE pathogenesis by inducing peripheral Tregs, programmed cell death ligand 1 (PD-L1) dependently. This tolerogenic program is substantially reduced upon the transfer of JAK1-deficient DCs. DC-intrinsic IFN-γ-JAK1-STAT1 signaling induces PD-L1, which is required for DCs to convert CD4+ T cells into Tregs in vitro and attenuated upon JAK1 deficiency and filgotinib treatment. Thus, DC-intrinsic JAK1 promotes peripheral tolerance, suggesting potential unwarranted DC-mediated effects of Jakinibs in autoimmune diseases., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.)- Published
- 2022
- Full Text
- View/download PDF
24. An integrated pipeline for comprehensive analysis of immune cells in human brain tumor clinical samples.
- Author
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Maas RR, Soukup K, Klemm F, Kornete M, Bowman RL, Bedel R, Marie DN, Álvarez-Prado ÁF, Labes D, Wilson A, Brouland JP, Daniel RT, Hegi ME, and Joyce JA
- Subjects
- Humans, Brain Neoplasms pathology, Brain Neoplasms immunology, Tumor Microenvironment immunology
- Abstract
Human tissue samples represent an invaluable source of information for the analysis of disease-specific cellular alterations and their variation between different pathologies. In cancer research, advancing a comprehensive understanding of the unique characteristics of individual tumor types and their microenvironment is of considerable importance for clinical translation. However, investigating human brain tumor tissue is challenging due to the often-limited availability of surgical specimens. Here we describe a multimodule integrated pipeline for the processing of freshly resected human brain tumor tissue and matched blood that enables analysis of the tumor microenvironment, with a particular focus on the tumor immune microenvironment (TIME). The protocol maximizes the information yield from limited tissue and includes both the preservation of bulk tissue, which can be performed within 1 h following surgical resection, as well as tissue dissociation for an in-depth characterization of individual TIME cell populations, which typically takes several hours depending on tissue quantity and further downstream processing. We also describe integrated modules for immunofluorescent staining of sectioned tissue, bulk tissue genomic analysis and fluorescence- or magnetic-activated cell sorting of digested tissue for subsequent culture or transcriptomic analysis by RNA sequencing. Applying this pipeline, we have previously described the overall TIME landscape across different human brain malignancies, and were able to delineate disease-specific alterations of tissue-resident versus recruited macrophage populations. This protocol will enable researchers to use this pipeline to address further research questions regarding the tumor microenvironment., (© 2021. The Author(s), under exclusive licence to Springer Nature Limited.)
- Published
- 2021
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- View/download PDF
25. Glycidyl and Methyl Methacrylate UV-Grafted PDMS Membrane Modification toward Tramadol Membrane Selectivity.
- Author
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Bourassi M, Pasichnyk M, Oesch O, Sundararajan S, Trávničková T, Soukup K, Kasher R, and Gaálová J
- Abstract
Pharmaceutical wastewater pollution has reached an alarming stage, as many studies have reported. Membrane separation has shown great performance in wastewater treatment, but there are some drawbacks and undesired byproducts of this process. Selective membranes could be used for pollutant investigation sensors or even for pollutant recovery. The polydimethylsiloxane (PDMS) membrane was first tested on separated and mixed antibiotic (ATB) water solutions containing sulfamethoxazole (SM), trimethoprim (TMP), and tetracycline (TET). Then, the bare and ultra-violet grafted (UV-grafted) PDMS membranes (MMA-DMAEMA 10, GMA-DMAEMA 5, and GMA-DMAEMA 10) were tested in tramadol (TRA) separation, where the diffusion coefficient was evaluated. Finally, the membranes were tested in pertraction with a mixture of SM, TMP, TET, and TRA. The membranes were characterized using the following methods: contact angle measurement, FTIR, SEM/EDX, and surface and pore analysis. The main findings were that TET was co-eluted during mixed ATB pertraction, and GMA-DMAEMA 5 was found to selectively permeate TRA over the present ATBs.
- Published
- 2021
- Full Text
- View/download PDF
26. Modified Single-Walled Carbon Nanotube Membranes for the Elimination of Antibiotics from Water.
- Author
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Gaálová J, Bourassi M, Soukup K, Trávníčková T, Bouša D, Sundararajan S, Losada O, Kasher R, Friess K, and Sofer Z
- Abstract
The hydrophilic and hydrophobic single-walled carbon nanotube membranes were prepared and progressively applied in sorption, filtration, and pertraction experiments with the aim of eliminating three antibiotics-tetracycline, sulfamethoxazole, and trimethoprim-as a single pollutant or as a mixture. The addition of SiO
2 to the single-walled carbon nanotubes allowed a transparent study of the influence of porosity on the separation processes. The mild oxidation, increasing hydrophilicity, and reactivity of the single-walled carbon nanotube membranes with the pollutants were suitable for the filtration and sorption process, while non-oxidized materials with a hydrophobic layer were more appropriate for pertraction. The total pore volume increased with an increasing amount of SiO2 (from 743 to 1218 mm3 /g) in the hydrophilic membranes. The hydrophobic layer completely covered the carbon nanotubes and SiO2 nanoparticles and provided significantly different membrane surface interactions with the antibiotics. Single-walled carbon nanotubes adsorbed the initial amount of antibiotics in less than 5 h. A time of 2.3 s was sufficient for the filtration of 98.8% of sulfamethoxazole, 95.5% of trimethoprim, and 87.0% of tetracycline. The thicker membranes demonstrate a higher adsorption capacity. However, the pertraction was slower than filtration, leading to total elimination of antibiotics (e.g., 3 days for tetracycline). The diffusion coefficient of the antibiotics varies between 0.7-2.7 × 10-10 , depending on the addition of SiO2 in perfect agreement with the findings of the textural analysis and scanning electron microscopy observations. Similar to filtration, tetracycline is retained by the membranes more than sulfamethoxazole and trimethoprim.- Published
- 2021
- Full Text
- View/download PDF
27. Automation of the CAS Document Delivery Service.
- Author
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Steensland, M. C. and Soukup, K. M.
- Abstract
The automation of online order retrieval for Chemical Abstracts Service Document Delivery Service was accomplished by shifting to an order retrieval/dispatch process linked to a Unix network. The Unix-based environment, its terminal emulation, page-break, and user-friendly interface software, and later enhancements are reviewed. Resultant increase in processing productivity is discussed. (MBR)
- Published
- 1986
28. Myeloid PTEN deficiency impairs tumor-immune surveillance via immune-checkpoint inhibition
- Author
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Kuttke, M., Sahin, E., Pisoni, J., Percig, S., Vogel, A., Kraemmer, D., Hanzl, L., Brunner, J. S., Paar, H., Soukup, K., Halfmann, A., Dohnal, A. M., Steiner, C. W., Blüml, S., Basilio, J., Hochreiter, B., Salzmann, M., Hoesel, B., Lametschwandtner, G., Eferl, R., Schmid, J. A., and Schabbauer, G.
- Subjects
tumor immune-surveillance ,Colitis-associated colon cancer ,myeloid PI3K ,CD8α+DCs ,Original Research - Abstract
Tumor–host interaction is determined by constant immune surveillance, characterized by tumor infiltration of myeloid and lymphoid cells. A malfunctioning or diverted immune response promotes tumor growth and metastasis. Recent advances had been made, by treating of certain tumor types, such as melanoma, with T-cell checkpoint inhibitors. This highlights the importance of understanding the molecular mechanisms underlying the crosstalk between tumors and their environment, in particular myeloid and lymphoid cells. Our aim was to study the contribution of the myeloid PI3K/PTEN-signaling pathway in the regulation of tumor-immune surveillance in murine models of cancer. We made use of conditional PTEN-deficient mice, which exhibit sustained activation of the PI3K-signaling axis in a variety of myeloid cell subsets such as macrophages and dendritic cells (DCs). In colitis-associated colon cancer (CAC), mice deficient in myeloid PTEN showed a markedly higher tumor burden and decreased survival. We attributed this observation to the increased presence of immune-modulatory conventional CD8α+ DCs in the spleen, whereas other relevant myeloid cell subsets were largely unaffected. Notably, we detected enhanced surface expression of PD-L1 and PD-L2 on these DCs. As a consequence, tumoricidal T-cell responses were hampered or redirected. Taken together, our findings indicated an unanticipated role for the PI3K/PTEN-signaling axis in the functional regulation of splenic antigen-presenting cells (APCs). Our data pointed at potential, indirect, tumoricidal effects of subclass-specific PI3K inhibitors, which are currently under clinical investigation for treatment of tumors, via myeloid cell activation.
- Published
- 2016
29. Atom interferometry with quantized light pulses.
- Author
-
Soukup K, Di Pumpo F, Aßmann T, Schleich WP, and Giese E
- Abstract
The far-field patterns of atoms diffracted from a classical light field or from a quantum one in a photon-number state are identical. On the other hand, diffraction from a field in a coherent state, which shares many properties with classical light, displays a completely different behavior. We show that in contrast to the diffraction patterns, the interference signal of an atom interferometer with light-pulse beam splitters and mirrors in intense coherent states does approach the limit of classical fields. However, low photon numbers reveal the granular structure of light, leading to a reduced visibility since welcher-Weg (which-way) information is encoded into the field. We discuss this effect for a single photon-number state as well as a superposition of two such states.
- Published
- 2021
- Full Text
- View/download PDF
30. In situ sorption phenomena can mitigate potential negative environmental effects of underground coal gasification (UCG) - an experimental study of phenol removal on UCG-derived residues in the aspect of contaminant retardation.
- Author
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Strugała-Wilczek A, Basa W, Kapusta K, and Soukup K
- Subjects
- Adsorption, Hot Temperature, Mining, Models, Theoretical, Phenol chemistry, Pressure, Water Pollutants, Chemical chemistry, Coal, Environmental Restoration and Remediation methods, Phenol isolation & purification, Water Pollutants, Chemical isolation & purification
- Abstract
The aim of the study was to investigate the sorption interactions between phenol and materials obtained from four different underground coal gasification (UCG) ex-situ simulations. These interactions are significant in terms of the impact of the UCG on the groundwater environment. Sorption parameters were determined for two sample types: raw coal mined from the coal-bed and then subjected to the gasification process; and char residue acquired from the cavity formed as a result of the UCG processes. Laboratory-scale tests were carried out using deionized water and aqueous solutions with increasing concentrations of phenol (from 50 mg/dm
3 to 2000 mg/dm3 ) at 298 K. On the assumption of physical interactions (non-specific physisorption) and due to a nonlinear mass distribution of adsorbed substances as a function of equilibrium concentration, the Freundlich isotherm model was applied to describe adsorption phenomena. The isotherms have good fitting (R2 from 0.5716 to 0.9811). Relatively high percentage phenol removal efficiency was observed for all tested chars (from 17.0% to 99.8% for the 1.0-2.5 mm fraction and from 6.9% to 99.6% for the 10.0-12.5 mm fraction). Additionally, the sorption characteristics was used to evaluate the retardation coefficients. The largest delay in the organic pollutant migration in the environment around a UCG reactor occurs for phenol transport in the layer of the post-process char from 'Wesoła' after 40 bar pressure experiment., (Copyright © 2020 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2021
- Full Text
- View/download PDF
31. Interrogation of the Microenvironmental Landscape in Brain Tumors Reveals Disease-Specific Alterations of Immune Cells.
- Author
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Klemm F, Maas RR, Bowman RL, Kornete M, Soukup K, Nassiri S, Brouland JP, Iacobuzio-Donahue CA, Brennan C, Tabar V, Gutin PH, Daniel RT, Hegi ME, and Joyce JA
- Subjects
- Brain immunology, Brain metabolism, Brain Neoplasms pathology, Female, Glioma metabolism, Humans, Lymphocytes, Tumor-Infiltrating immunology, Macrophages immunology, Male, Microglia metabolism, Neutrophils metabolism, T-Lymphocytes metabolism, Brain Neoplasms immunology, Glioma pathology, Tumor Microenvironment immunology
- Abstract
Brain malignancies encompass a range of primary and metastatic cancers, including low-grade and high-grade gliomas and brain metastases (BrMs) originating from diverse extracranial tumors. Our understanding of the brain tumor microenvironment (TME) remains limited, and it is unknown whether it is sculpted differentially by primary versus metastatic disease. We therefore comprehensively analyzed the brain TME landscape via flow cytometry, RNA sequencing, protein arrays, culture assays, and spatial tissue characterization. This revealed disease-specific enrichment of immune cells with pronounced differences in proportional abundance of tissue-resident microglia, infiltrating monocyte-derived macrophages, neutrophils, and T cells. These integrated analyses also uncovered multifaceted immune cell activation within brain malignancies entailing converging transcriptional trajectories while maintaining disease- and cell-type-specific programs. Given the interest in developing TME-targeted therapies for brain malignancies, this comprehensive resource of the immune landscape offers insights into possible strategies to overcome tumor-supporting TME properties and instead harness the TME to fight cancer., Competing Interests: Declaration of Interests The authors declare no competing interests., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
32. Gliomasphere marker combinatorics: multidimensional flow cytometry detects CD44+/CD133+/ITGA6+/CD36+ signature.
- Author
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Erhart F, Blauensteiner B, Zirkovits G, Printz D, Soukup K, Klingenbrunner S, Fischhuber K, Reitermaier R, Halfmann A, Lötsch D, Spiegl-Kreinecker S, Berger W, Visus C, and Dohnal A
- Subjects
- AC133 Antigen analysis, Algorithms, Biomarkers, Tumor metabolism, Brain Neoplasms metabolism, Brain Neoplasms mortality, CD36 Antigens analysis, Cell Adhesion physiology, Cell Line, Tumor, Computer Simulation, Glioblastoma metabolism, Glioblastoma mortality, Humans, Hyaluronan Receptors analysis, Integrin alpha6 analysis, Kaplan-Meier Estimate, Neoplastic Stem Cells metabolism, Biomarkers, Tumor analysis, Brain Neoplasms pathology, Flow Cytometry methods, Glioblastoma pathology
- Abstract
Glioblastoma is the most dangerous brain cancer. One reason for glioblastoma's aggressiveness are glioblastoma stem-like cells. To target them, a number of markers have been proposed (CD133, CD44, CD15, A2B5, CD36, CXCR4, IL6R, L1CAM, and ITGA6). A comprehensive study of co-expression patterns of them has, however, not been performed so far. Here, we mapped the multidimensional co-expression profile of these stemness-associated molecules. Gliomaspheres - an established model of glioblastoma stem-like cells - were used. Seven different gliomasphere systems were subjected to multicolor flow cytometry measuring the nine markers CD133, CD44, CD15, A2B5, CD36, CXCR4, IL6R, L1CAM, and ITGA6 all simultaneously based on a novel 9-marker multicolor panel developed for this study. The viSNE dimensionality reduction algorithm was applied for analysis. All gliomaspheres were found to express at least five different glioblastoma stem-like cell markers. Multi-dimensional analysis showed that all studied gliomaspheres consistently harbored a cell population positive for the molecular signature CD44+/CD133+/ITGA6+/CD36+. Glioblastoma patients with an enrichment of this combination had a significantly worse survival outcome when analyzing the two largest available The Cancer Genome Atlas datasets (MIT/Harvard Affymetrix: P = 0.0015, University of North Carolina Agilent: P = 0.0322). In sum, we detected a previously unknown marker combination - demonstrating feasibility, usefulness, and importance of high-dimensional gliomasphere marker combinatorics., (© 2018 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine.)
- Published
- 2019
- Full Text
- View/download PDF
33. A Long-Distance Relay-tionship between Tumor and Bone.
- Author
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Soukup K and Joyce JA
- Subjects
- Humans, Lung Neoplasms, Myeloid Cells, Tumor Microenvironment, Bone and Bones, Neutrophils
- Abstract
Myeloid cells, including neutrophils, are important regulators of tumor growth and metastasis. In Science, Engblom et al. (2017) reveal how lung tumors remotely engage bone-resident cells through a relay mechanism that achieves a sustained supply of tumor-promoting neutrophils., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
34. Determination of texture and transport characteristics of electrospun nanofibrous mats
- Author
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Soukup, K., primary, Hejtmánek, V., additional, Petráš, D., additional, and Šolcová, O., additional
- Published
- 2013
- Full Text
- View/download PDF
35. [Maternal hyperphenylalaninemia in a population of healty Czech women. 18 years' experience with mass screening, diet therapy and metabolic monitoring]
- Author
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Hyánek J, Bendl J, Jiri Zeman, Soukup K, Dolezal A, Kozich V, St'astná S, Kubík M, and Viletová H
- Subjects
Adult ,Pregnancy Complications ,Phenylketonuria, Maternal ,Adolescent ,Pregnancy ,Incidence ,Phenylalanine ,Phenylketonurias ,Infant, Newborn ,Humans ,Mass Screening ,Female ,Czech Republic - Abstract
Elevated phenylalanine levels in maternal blood (hyperphenylalaninaemia) during pregnancy damages the developing foetal tissues. Early detection of pregnant women with hyperphenylalaninaemia and adherence to a low phenylalanine diet already before conception and throughout pregnancy can prevent this damage. The objective of the investigation are results achieved screening and strict monitoring of low phenylalanine dietetic treatment in detected pregnant women of the Prague population.186 350 healthy women of the Prague population were examined by the chromatographic screening test in a venous blood sample during their first visit in a maternity welfare centre and 22 positive cases were detected (incidence 1:8470). In 86% mild, persistent or benign forms of phenylketonuria were involved. Nineteen patients were treated by a low phenylalanine diet and the phenylalanine tolerance was monitored as well as the nitrogen balance, amino acids in serum and urine, protein markers, trace elements, vitamins, lipids, the body mass index-BMI, changes of body weight after introduction of the dietetic treatment and treatment during pregnancy. A significant increase of the phenylalanine tolerance by 20 to 200% was found, mostly in the second half of pregnancy and reduced values of serum and urinary selenium. The decrease of body weight when the diet was introduced and the increment during pregnancy correlated with the BMI value. In the other investigated parameters no significant deviations were found.Fifteen healthy children with normal psychomotor development delivered by 12 mothers with hyperphenylalaninaemia provide evidence of the effectiveness of prenatal screening for hyperphenylalaninaemia during pregnancy.
- Published
- 1996
36. A novel chemoradiation targeting stem and nonstem pancreatic cancer cells by repurposing disulfiram.
- Author
-
Cong J, Wang Y, Zhang X, Zhang N, Liu L, Soukup K, Michelakos T, Hong T, DeLeo A, Cai L, Sabbatino F, Ferrone S, Lee H, Levina V, Fuchs B, Tanabe K, Lillemoe K, Ferrone C, and Wang X
- Subjects
- Acetaldehyde Dehydrogenase Inhibitors pharmacology, Animals, Antineoplastic Combined Chemotherapy Protocols pharmacology, Carcinoma, Pancreatic Ductal genetics, Carcinoma, Pancreatic Ductal pathology, Cell Line, Tumor, Chemoradiotherapy, Copper pharmacology, Drug Repositioning, Female, Fluorouracil pharmacology, Humans, Mice, Mice, Inbred C57BL, Neoplastic Stem Cells pathology, Pancreatic Neoplasms genetics, Pancreatic Neoplasms pathology, Radiation-Sensitizing Agents pharmacology, Random Allocation, Carcinoma, Pancreatic Ductal drug therapy, Carcinoma, Pancreatic Ductal radiotherapy, Disulfiram pharmacology, Neoplastic Stem Cells drug effects, Neoplastic Stem Cells radiation effects, Pancreatic Neoplasms drug therapy, Pancreatic Neoplasms radiotherapy
- Abstract
Pancreatic ductal adenocarcinoma (PDAC) has a 5-year relative survival rate of 8% and is projected to be the second leading cause of cancer death by 2030, underscoring the urgency to develop new strategies to improve current therapeutic modalities for PDAC. Targeting pancreatic cancer stem cells (PCSCs), which are resistant to radiation and chemotherapy, is a promising strategy. A novel approach which can be readily clinically translated is to repurpose disulfiram (DSF), a drug for treating alcoholism, to target PCSCs. Chemoradiation or the combination of chemotherapy agents FOLFIRINOX, currently standard care for PDAC, can increase stemness in some established or primary PDAC cell lines. However, DSF in the presence of exogenously or endogenously supplied copper (Cu), when combined with chemotherapy or chemoradiation, targets both PCSCs and nonstem PDAC cells. Previously, we demonstrated that DSF/Cu effectively targets breast cancer stem cells in the context of fractionated radiation (FIR) by inhibiting the NF-κB-stemness gene pathway. Therefore, the hypothesis that PCSCs can be effectively targeted by incorporating DSF/Cu into the standard chemoradiation regimen consisting of 5-FU and FIR was investigated and found to be effective in vitro in targeting PCSCs, identified as either ALDH
bright or CD24+/CD44+/ESA+ or sphere-forming cells, as well as nonstem PDAC cells. In vivo, the combination of IR+5-FU+DSF/Cu was more effective (72.46%) than either IR+5-FU (30.32%) or IR+FOLFIRINOX therapy (43.04%) in inhibiting growth of the mouse Panc02 tumor. These encouraging results provide a solid foundation for clinical trials to improve the outcomes of the current standard chemoradiation therapy regimen for PDAC., (Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2017
- Full Text
- View/download PDF
37. CD28 Blockade Ex Vivo Induces Alloantigen-Specific Immune Tolerance but Preserves T-Cell Pathogen Reactivity.
- Author
-
Dillinger B, Ahmadi-Erber S, Soukup K, Halfmann A, Schrom S, Vanhove B, Steinberger P, Geyeregger R, Ladisch S, and Dohnal AM
- Abstract
Donor T-cells contribute to reconstitution of protective immunity after allogeneic hematopoietic stem cell transplantation (HSCT) but must acquire specific tolerance against recipient alloantigens to avoid life-threatening graft-versus-host disease (GvHD). Systemic immunosuppressive drugs may abrogate severe GvHD, but this also impedes memory responses to invading pathogens. Here, we tested whether ex vivo blockade of CD28 co-stimulation can enable selective T-cell tolerization to alloantigens by facilitating CD80/86-cytotoxic T-lymphocyte-associated protein 4 (CTLA-4) signaling. Treatment of human allogeneic dendritic cell/T-cell co-cultures with a human CD28 blocking antibody fragment (α-huCD28) significantly abrogated subsequent allospecific immune responses, seen by decreased T-cell proliferation and of type 1 cytokine (IFN-γ and IL-2) expression. Allo-tolerization persisted after discontinuation of CD28 blockade and secondary alloantigen stimulation, as confirmed by enhanced CTLA-4 and PD-1 immune checkpoint signaling. However, T-cells retained reactivity to pathogens, supported by clonotyping of neo-primed and cross-reactive T-cells specific for Candida albicans or third-party antigens using deep sequencing analysis. In an MHC-mismatched murine model, we tolerized C57BL/6 T-cells by ex vivo exposure to a murine single chain Fv specific for CD28 (α-muCD28). Infusion of these cells, after α-muCD28 washout, into bone marrow-transplanted BALB/c mice caused allo-tolerance and did not induce GvHD-associated hepatic pathology. We conclude that selective CD28 blockade ex vivo can allow the generation of stably allo-tolerized T-cells that in turn do not induce graft-versus-host reactions while maintaining pathogen reactivity. Hence, CD28 co-stimulation blockade of donor T-cells may be a useful therapeutic approach to support the immune system after HSCT.
- Published
- 2017
- Full Text
- View/download PDF
38. Loss of MAPK-activated protein kinase 2 enables potent dendritic cell-driven anti-tumour T cell response.
- Author
-
Soukup K, Halfmann A, Dillinger B, Poyer F, Martin K, Blauensteiner B, Kauer M, Kuttke M, Schabbauer G, and Dohnal AM
- Subjects
- Animals, CD8-Positive T-Lymphocytes enzymology, CD8-Positive T-Lymphocytes pathology, Cell Line, Tumor, Dendritic Cells enzymology, Dendritic Cells pathology, Intracellular Signaling Peptides and Proteins immunology, Melanoma, Experimental enzymology, Melanoma, Experimental genetics, Melanoma, Experimental pathology, Mice, Mice, Knockout, Protein Serine-Threonine Kinases immunology, CD8-Positive T-Lymphocytes immunology, Dendritic Cells immunology, Immunity, Cellular, Intracellular Signaling Peptides and Proteins deficiency, Melanoma, Experimental immunology, Protein Serine-Threonine Kinases deficiency, Tumor Microenvironment genetics, Tumor Microenvironment immunology
- Abstract
Maintaining dendritic cells (DC) in a state of dysfunction represents a key mechanism by which tumour cells evade recognition and elimination by the immune system. Limited knowledge about the intracellular mediators of DC dysfunction restricts success of therapies aimed at reactivating a DC-driven anti-tumour immune response. Using a cell type-specific murine knock-out model, we have identified MAPK-activated protein kinase 2 (MK2) as a major guardian of a suppressive DC phenotype in the melanoma tumour microenvironment. MK2 deletion in CD11c
+ cells led to an expansion of stimulatory CD103+ DCs, mounting a potent CD8+ T cell response that resulted in elimination of highly aggressive B16-F10 tumours upon toll-like receptor (TLR) activation in the presence of tumour antigen. Moreover, tumour infiltration by suppressive myeloid cells was strongly diminished. These insights into the regulation of DC functionality reveal MK2 as a targetable pathway for DC-centred immunomodulatory cancer therapies.- Published
- 2017
- Full Text
- View/download PDF
39. Optimising production technology for urea synthesis reactors to obtain the required properties of welded joints.
- Author
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Libra, O and Soukup, K
- Published
- 1991
- Full Text
- View/download PDF
40. Using an instrumented pendulum impact tester for evaluating welded joints in 11 503 steel.
- Author
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Man, J, Holzmann, M, and Soukup, K
- Published
- 1993
- Full Text
- View/download PDF
41. Loss of Phosphatase and Tensin Homolog in APCs Impedes Th17-Mediated Autoimmune Encephalomyelitis.
- Author
-
Sahin E, Brunner JS, Kral JB, Kuttke M, Hanzl L, Datler H, Paar H, Neuwinger N, Saferding V, Zinser E, Halfmann A, Soukup K, Hainzl E, Lohmeyer T, Niederreiter B, Haider T, Dohnal AM, Krönke G, Blüml S, and Schabbauer G
- Subjects
- Animals, Arginase biosynthesis, Autoimmunity immunology, CD11c Antigen biosynthesis, Cell Differentiation immunology, Encephalomyelitis, Autoimmune, Experimental prevention & control, Enzyme Activation genetics, Enzyme Activation immunology, Interleukin-17 biosynthesis, Interleukins biosynthesis, Lymphocyte Activation, Macrophage Activation immunology, Macrophages immunology, Mice, Mice, Inbred C57BL, Mice, Knockout, Myelin-Oligodendrocyte Glycoprotein immunology, Nitric Oxide Synthase Type II biosynthesis, Peptide Fragments immunology, Phosphatidylinositol 3-Kinases metabolism, Signal Transduction immunology, p38 Mitogen-Activated Protein Kinases immunology, Interleukin-22, Dendritic Cells immunology, Encephalomyelitis, Autoimmune, Experimental genetics, Encephalomyelitis, Autoimmune, Experimental immunology, PTEN Phosphohydrolase genetics, Th17 Cells immunology
- Abstract
The PI3K signaling cascade in APCs has been recognized as an essential pathway to initiate, maintain, and resolve immune responses. In this study, we demonstrate that a cell type-specific loss of the PI3K antagonist phosphatase and tensin homolog (PTEN) in myeloid cells renders APCs toward a regulatory phenotype. APCs deficient for PTEN exhibit reduced activation of p38 MAPK and reduced expression of T cell-polarizing cytokines. Furthermore, PTEN deficiency leads to upregulation of markers for alternative activation, such as Arginase 1, with concomitant downregulation of inducible NO synthase in APCs in vitro and in vivo. As a result, T cell polarization was dysfunctional in PTEN(-/-) APCs, in particular affecting the Th17 cell subset. Intriguingly, mice with cell type-specific deletions of PTEN-targeting APCs were protected from experimental autoimmune encephalomyelitis, which was accompanied by a pronounced reduction of IL-17- and IL-22-producing autoreactive T cells and reduced CNS influx of classically activated monocytes/macrophages. These observations support the notion that activation of the PI3K signaling cascade promotes regulatory APC properties and suppresses pathogenic T cell polarization, thereby reducing the clinical symptoms and pathology of experimental autoimmune encephalomyelitis., (Copyright © 2015 by The American Association of Immunologists, Inc.)
- Published
- 2015
- Full Text
- View/download PDF
42. The MAPK-Activated Kinase MK2 Attenuates Dendritic Cell-Mediated Th1 Differentiation and Autoimmune Encephalomyelitis.
- Author
-
Soukup K, Halfmann A, Le Bras M, Sahin E, Vittori S, Poyer F, Schuh C, Luger R, Niederreiter B, Haider T, Stoiber D, Blüml S, Schabbauer G, Kotlyarov A, Gaestel M, Felzmann T, and Dohnal AM
- Subjects
- Animals, Cell Differentiation, Dendritic Cells drug effects, Dendritic Cells pathology, Encephalomyelitis, Autoimmune, Experimental genetics, Encephalomyelitis, Autoimmune, Experimental pathology, Gene Expression Regulation, Humans, Immunization, Interleukin-10 genetics, Interleukin-10 immunology, Interleukin-12 genetics, Interleukin-12 immunology, Interleukin-1alpha genetics, Interleukin-1alpha immunology, Interleukin-1beta genetics, Interleukin-1beta immunology, Intracellular Signaling Peptides and Proteins antagonists & inhibitors, Intracellular Signaling Peptides and Proteins genetics, Lipopolysaccharides administration & dosage, Lipopolysaccharides immunology, Lymph Nodes drug effects, Lymph Nodes immunology, Lymph Nodes pathology, Male, Mice, Mice, Knockout, Mitogen-Activated Protein Kinase 1 genetics, Mitogen-Activated Protein Kinase 1 immunology, Mitogen-Activated Protein Kinase 3 genetics, Mitogen-Activated Protein Kinase 3 immunology, Protein Kinase Inhibitors pharmacology, Protein Serine-Threonine Kinases antagonists & inhibitors, Protein Serine-Threonine Kinases genetics, STAT3 Transcription Factor genetics, STAT3 Transcription Factor immunology, Signal Transduction, Th1 Cells drug effects, Th1 Cells pathology, p38 Mitogen-Activated Protein Kinases genetics, p38 Mitogen-Activated Protein Kinases immunology, Dendritic Cells immunology, Encephalomyelitis, Autoimmune, Experimental immunology, Intracellular Signaling Peptides and Proteins immunology, Protein Serine-Threonine Kinases immunology, Th1 Cells immunology
- Abstract
Dendritic cell (DC)-mediated inflammation induced via TLRs is promoted by MAPK-activated protein kinase (MK)-2, a substrate of p38 MAPK. In this study we show an opposing role of MK2, by which it consolidates immune regulatory functions in DCs through modulation of p38, ERK1/2-MAPK, and STAT3 signaling. During primary TLR/p38 signaling, MK2 mediates the inhibition of p38 activation and positively cross-regulates ERK1/2 activity, leading to a reduction of IL-12 and IL-1α/β secretion. Consequently, MK2 impairs secondary autocrine IL-1α signaling in DCs, which further decreases the IL-1α/p38 but increases the anti-inflammatory IL-10/STAT3 signaling route. Therefore, the blockade of MK2 activity enables human and murine DCs to strengthen proinflammatory effector mechanisms by promoting IL-1α-mediated Th1 effector functions in vitro. Furthermore, MK2-deficient DCs trigger Th1 differentiation and Ag-specific cytotoxicity in vivo. Finally, wild-type mice immunized with LPS in the presence of an MK2 inhibitor strongly accumulate Th1 cells in their lymph nodes. These observations correlate with a severe clinical course in DC-specific MK2 knockout mice compared with wild-type littermates upon induction of experimental autoimmune encephalitis. Our data suggest that MK2 exerts a profound anti-inflammatory effect that prevents DCs from prolonging excessive Th1 effector T cell functions and autoimmunity., (Copyright © 2015 by The American Association of Immunologists, Inc.)
- Published
- 2015
- Full Text
- View/download PDF
43. Radiation meets immunotherapy - a perfect match in the era of combination therapy?
- Author
-
Soukup K and Wang X
- Subjects
- Combined Modality Therapy, Humans, Neoplasms immunology, Neoplasms radiotherapy, Tumor Escape, Immunotherapy, Neoplasms therapy
- Abstract
Purpose: This review focuses on recent advances in the field of combining radiation with immunotherapy for the treatment of malignant diseases, since various combinatorial cancer therapy approaches have lately proven highly successful., Results: With initial case reports and anecdotes progressively converting into solid clinical data, interest in cancer immunotherapy (CIT) has risen steeply. Especially immune checkpoint blockade therapies have recently celebrated tremendous successes in the treatment of severe malignancies resistant to conventional treatment strategies. Nevertheless, the high variability of patient responses to CIT remains a major hurdle, clearly indicating an urgent need for improvement. It has been suggested that successful cancer therapy most probably involves combinatorial treatment approaches. Radiotherapy (RT) has been proposed as a powerful partner for CIT due to its broad spectrum of immune modulatory characteristics. Several preclinical studies, supported by an increasing number of clinical observations, have demonstrated synergistic interactions between RT and CIT resulting in significantly improved therapy outcomes., Conclusions: Numerous reports have shown that radiation is capable of tipping the scales from tumor immune evasion to elimination in different tumor types. The next puzzle to be solved is the question of logistics - including types, schedule and dosage of combinatorial RT and CIT strategies.
- Published
- 2015
- Full Text
- View/download PDF
44. The Series "Progress in the Chemistry of Organic Natural Products": 75 years of service in the development of natural product chemistry.
- Author
-
Soukup RW and Soukup K
- Subjects
- History, 20th Century, History, 21st Century, Biological Products chemistry, Organic Chemicals chemistry
- Published
- 2015
- Full Text
- View/download PDF
45. Un Bon Voyage Sonore: Avoiding Listener Discomfort in Immersive Audio Documentary.
- Author
-
Wincott, Abigail
- Subjects
DOCUMENTARY radio programs ,RADIO audiences ,AUDIO acoustics ,RADIO producers & directors ,SPATIAL arrangement - Abstract
This article interrogates claims made in the emerging discourse of immersive audio documentary that spatial sound is more real, allowing the listener to step into another space, and understand the world better. However, the analysis shows makers are failing to make good on these claims. Use of the technical affordances of spatial audio is limited and producers enroll concepts of the real and of transportation in a colonial discourse of exploration and adventure, reproducing a disengaged mode of listening, while avoiding discomfort at all costs. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
46. Supported g-C3N4/WO3 mixed layers for photocatalytic water remediation.
- Author
-
Brabec, Libor, Mikyskova, Eliska, Zin, Olha, Walderova, Barbora, Zouzelka, Radek, Rathousky, Jiri, Weers, Marco, Schechterle, Arne, and Wark, Michael
- Abstract
g-C
3 N4 layers with good mechanical properties, including their cohesion and adhesion to stainless-steel supports, were prepared by the quantitative electrophoretic co-deposition of g-C3 N4 and WO3 nanocrystals. It was carried out in a mixture of organic solvents by applying a voltage of 750 V. The typical layer area density was 0.64 mg cm–2 . The photocatalytic degradation of 4-chlorophenol under blue-light irradiation showed that the performance of stable composite layers containing 25–50 wt.% of WO3 was only slightly weaker than that of unstable pristine g-C3 N4 ones. The high photocatalytic performance was due to g-C3 N4 , while WO3 contributed to a good mechanical resistance of layers in stirred water. Finally, the composite layers exhibited a very high 4-chlorophenol mineralization of 75% in 24 h, even higher than the corresponding suspensions. Owing to their stability in water and performance, the developed layers are suitable for applications in environmental technologies. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
47. A critical re‐analysis of biochar properties prediction from production parameters and elemental analysis.
- Author
-
Lebrun Thauront, Johanne, Soja, Gerhard, Schmidt, Hans‐Peter, and Abiven, Samuel
- Subjects
CARBON cycle ,SOIL amendments ,SEWAGE sludge ,PLASTIC scrap ,CARBON emissions ,BIOCHAR - Abstract
Biochar is the product of intentional pyrolysis of organic feedstocks. It is made under controlled conditions in order to achieve desired physico‐chemical characteristics. These characteristics ultimately affect biochar properties as a soil amendment. When biochar is used for carbon storage, an important property is its persistence in soil, often described by the proportion of biochar carbon remaining in soil after a 100 years (Fperm$$ {\mathrm{F}}_{\mathrm{perm}} $$). We analyzed published data on 1230 biochars to re‐evaluate the effect of pyrolysis parameters on biochar characteristics and the possibility to predict Fperm$$ {\mathrm{F}}_{\mathrm{perm}} $$ from the maximum temperature reached during pyrolysis (HTT). We showed that biochar ash and nitrogen (N) contents were mostly affected by feedstock type. The oxygen to carbon (O:C) and hydrogen to carbon (H:C) ratios were mostly affected by the extent of pyrolysis (a combination of HTT and pyrolysis duration), except for non (ligno)cellulosic feedstocks (plastic waste, sewage sludge). The volatile matter (VM) content was affected by both feedstock type and the extent of pyrolysis. We demonstrated that HTT is the main driver of H:C ‐‐ an indicator of persistence ‐‐ but that it is not measured accurately enough to precisely predict H:C, let alone persistence. We examined the equations to estimate Fperm$$ {\mathrm{F}}_{\mathrm{perm}} $$ available in the literature and showed that Fperm$$ {\mathrm{F}}_{\mathrm{perm}} $$ calculated from HTT presented little agreement with Fperm$$ {\mathrm{F}}_{\mathrm{perm}} $$ calculated from H:C. The sign and magnitude of the bias depended on the equation used to calculate Fperm$$ {\mathrm{F}}_{\mathrm{perm}} $$ and the dispersion was usually large. This could lead to improper compensation of carbon emissions and wrong reporting of carbon sinks in national carbon accounting schemes. We recommend not to use HTT as a predictor for persistence and stress the importance to rapidly develop more accurate proxies of biochar C persistence in soil. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
48. The correlation between cancer stem cells and epithelial-mesenchymal transition: molecular mechanisms and significance in cancer theragnosis.
- Author
-
Zi-Ning Lei, Qiu-Xu Teng, Jagadish Koya, Yangruiyu Liu, Zizhou Chen, Leli Zeng, Zhe-Sheng Chen, Shuo Fang, Jinxiang Wang, Yuchen Liu, and Yihang Pan
- Subjects
CANCER stem cells ,EPITHELIAL-mesenchymal transition ,TUMOR markers ,TRANSCRIPTION factors ,CELLULAR signal transduction - Abstract
The connections between cancer stem cells (CSCs) and epithelial-mesenchymal transition (EMT) is critical in cancer initiation, progression, metastasis, and therapy resistance, making it a focal point in cancer theragnosis. This review provides a panorama of associations and regulation pathways between CSCs and EMT, highlighting their significance in cancer. The molecular mechanisms underlined EMT are thoroughly explored, including the involvement of key transcription factors and signaling pathways. In addition, the roles of CSCs and EMT in tumor biology and therapy resistance, is further examined in this review. The clinical implications of CSCs-EMT interplay are explored, including identifying mesenchymal-state CSC subpopulations using advanced research methods and developing targeted therapies such as inhibitors and combination treatments. Overall, understanding the reciprocal relationship between EMT and CSCs holds excellent potential for informing the development of personalized therapies and ultimately improving patient outcomes. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
49. Complex role of neutrophils in the tumor microenvironment: an avenue for novel immunotherapies.
- Author
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Mao Zhang, Haokai Qin, Yingcheng Wu, and Qiang Gao
- Subjects
BONE marrow ,TUMOR microenvironment ,CANCER invasiveness ,NEUTROPHILS ,IMMUNOTHERAPY - Abstract
Neutrophils, which originate from the bone marrow and are characterized by a segmented nucleus and a brief lifespan, have a crucial role in the body's defense against infections and acute inflammation. Recent research has uncovered the complex roles of neutrophils as regulators in tumorigenesis, during which neutrophils exhibit a dualistic nature that promotes or inhibits tumor progression. This adaptability is pivotal within the tumor microenvironment (TME). In this review, we provide a comprehensive characterization of neutrophil plasticity and heterogeneity, aiming to illuminate current research findings and discuss potential therapeutic avenues. By delineating the intricate interplay of neutrophils in the TME, this review further underscores the urgent need to understand the dual functions of neutrophils with particular emphasis on the anti-tumor effects to facilitate the development of effective therapeutic strategies against cancer. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
50. Fabrication of the TiO2/Ti3C2 loaded ceramic membrane targeting for photocatalytic degradation of PPCPs: ciprofloxacin, tetracycline, and ibuprofen.
- Author
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Zhao, Taisheng, Liu, Xiaoman, Huai, Lankun, Feng, Rui, Yan, Tao, Xu, Weiying, and Zhao, Yanxia
- Abstract
Photocatalytic membranes offer an effective strategy to overcome the difficulties of solid-liquid separation and secondary contamination of powdered photocatalysts. MXene is a 2D material of layered Ti
3 C2 , which is considered to limit electron-hole separation and contribute to photocatalysis. In this work, the etched Ti3 C2 MXene was loaded on the surface of ceramic membranes using polydopamine (PDA) as a binder, followed by one-step calcination to produce TiO2 nanoparticles (NPs) in situ. The characterizations supported that the TiO2 /Ti3 C2 ceramic membranes had high mechanical strength while retaining the layered structure of Ti3 C2 , which was conducive to the inhibition of electron and hole complexation, improving the photocatalytic performance. Degradation experiments revealed that the material showed enhanced degradation of pharmaceuticals and personal care products (PPCPs) such as ciprofloxacin (CIP), tetracycline (TCN) and ibuprofen (IBP). The LC-MS and toxicity prediction models indicated that the developmental toxicity of CIP degradation products decreased with prolonged photocatalytic reaction, exhibiting no acute toxicity to fish. The MT650 exhibited significantly enhanced water flux properties (320 L/(m2 ·h)). The TiO2 /Ti3 C2 ceramic membranes explored in this work are expected to target the treatment of PPCPs with excellent engineering promise. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
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