168 results on '"Ruchi Rai"'
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2. Review of Ophthalmology, by Ruchi Rai, Softcover, 7.5' x 9.5'
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Bansal, Abhishek and Gupta, Jeevak
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Review of Ophthalmology (Nonfiction work) -- Book reviews ,Books -- Book reviews ,Literature/writing ,Publishing industry - Abstract
Review of Ophthalmology, by Ruchi Rai, Softcover, 7.5' x 9.5'. Peepee Publishers & Distributors (P) Ltd., 7/31, First Floor, Ansari Road, Daryaganj, New Delhi--110002, India. Ph: 9811156083, 011-55195868. Email:peepee160@yahoo.co.in: Publication [...]
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- 2009
3. Impact of Pre-pregnancy Body Mass Index on Neonatal Outcome
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Anchala Bhardwaj and Ruchi Rai
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bmi-body mass index ,neonatal outcome ,pre-pregnancy ,Pediatrics ,RJ1-570 - Abstract
Background: Pre-pregnancy body mass index (BMI) during the gestation period is a major factor that predicts fetal weight and development. It is also positively associated with an increase in fetal head circumference and femur length. To assess the impact of pre-pregnancy BMI on neonatal anthropometryMethods: This multicenter observational study was conducted from July 2010-July 2011. A total of 1,000 mothers were enrolled, and their antenatal records were screened for pre-pregnancy weight, height, and other details. They were assigned to four categories as per their BMI: underweight: BMI
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- 2021
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4. Hypothyroxinemia in sick term neonates and its risk factors in an extramural neonatal intensive care unit: a prospective cohort study
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Ruchi Rai, D. K. Singh, and Bhanu Kiran Bhakhri
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Euthyroid sick syndrome ,neonatal intensive care unit ,term newborns ,thyroid disturbances ,Medicine ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
ABSTRACT Objective: Thyroid functions in the sick newborns may be altered in the first week of life. Transient hypothyroxinemia has been reported in these babies, which could be due to the immaturity of the hypothalamic-pituitary-thyroid axis or to acute illness. We conducted this study to estimate the incidence of hypothyroxinemia and determine its risk factors in sick term newborns. Materials and methods: We analyzed free T4 (FT4) and thyroid-stimulating hormone (TSH) levels in sick term neonates (≤7 days of life) admitted to the neonatal intensive care unit. FT4 and TSH levels were estimated in the first week of life in all the enrolled neonates (N = 98) and then repeated at 14-21 days of life in 46 babies. Risk analysis was conducted using univariate and multivariate logistic regression, and numerical data was compared using the Mann-Whitney U test and t-test. Results: Hypothyroxinemia was seen in 10 (10.2%) of the admitted term babies. Male gender, vaginal delivery, presence of hypoxic ischemic encephalopathy, and need for mechanical ventilation (>24 hours) were identified as risk factors. There was a significant negative linear correlation between FT4 level in the first week of life and duration of hospital stay. Conclusion: Hypothyroxinemia is common in sick term neonates.
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- 2022
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5. Transient hypothyroxinemia of prematurity and its risk factors in an extramural neonatal intensive care unit
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Ruchi Rai, Dharmendra Kumar Singh, and Bhanu Kiran Bhakhri
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Congenital hypothyroidism ,delayed TSH elevation ,preterm infant ,transient hypothyroxinemia of prematurity ,Medicine ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
ABSTRACT Objective: Thyroid functions in preterm newborns may be altered in the first week of life. Hypothyroxinemia has been commonly reported in these babies, which could be due to the immaturity of the hypothalamic pituitary thyroid axis or acute illness. It could have a long-term impact on the developing brain of these babies. We conducted this study to estimate the incidence of transient hypothyroxinemia of prematurity (THOP) and to determine its risk factors. Materials and methods: We analyzed thyroid stimulating hormone (TSH) and free T4 levels of 64 preterm neonates admitted in the neonatal intensive care unit. TSH and free T4 levels were measured in the first week and then at 14-21 days of life to estimate the incidence of THOP and determine its risk factors. We also estimated the incidence of congenital hypothyroidism (CH) and delayed TSH elevation in CH. Risk analysis was conducted using simple and multiple logistic regression, and numerical data was compared using the Mann Whitney U test and t test. Results: THOP was seen in 25% of the preterm babies. Caesarean delivery, presence of one or more morbidities, mechanical ventilation, birth weight ≥ 1,500 g, and gestational age ≥ 32 weeks were identified as risk factors for THOP based on simple logistic regression. In multiple regression, mechanical ventilation and gestational age ≥ 32 weeks were significantly associated with THOP. CH was seen in 2 (3.1%) babies, and 1 of these cases had delayed TSH elevation. Conclusion: Thyroid abnormalities are common in preterm admitted neonates. Mechanical ventilation is an independent risk factor for development of THOP.
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- 2021
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6. Early hematological parameters as predictors for outcomes in children with dengue in northern India: A retrospective analysis
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Sumi Nandwani, Bhanu Kiran Bhakhri, Nupur Singh, Ruchi Rai, and Dharmender Kumar Singh
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Hemorrhagic fever ,Leucocyte count ,Mean platelet volume ,Platelet count ,Mortality predictors ,Arctic medicine. Tropical medicine ,RC955-962 - Abstract
Abstract INTRODUCTION: Dengue presents with a variable clinical course, ranging from mild illness to potentially fatal hemorrhage and shock. We aimed to evaluate the capabilities of various hematological parameters observed early in the course of illness for predicting the clinical outcomes of illness. METHODS: We retrospectively analyzed the records of children admitted in the pediatric inpatient services of the institute with dengue between 2017 and 2019. We determined the relationships between the hematological parameters observed during the first evaluation and the various clinical outcomes. RESULTS: We evaluated data from 613 patients (age range, 26 days to 17 years). Of these, 29.85% exhibited fever with warning signs, and 8.97% had severe dengue. Lower values of hemoglobin, platelet count, mean corpuscular volume, mean corpuscular hemoglobin concentration, and mean platelet volume, and higher values of total leukocyte count (TLC), hematocrit, and red cell distribution width variably correlated with numerous clinical outcomes-duration of hospital stay, development of complications, requirement of blood component transfusion, inotropic support, and mortality. Among the parameters, TLC ≥20,000/mL and initial platelet count ≤20,000/mL significantly associated with mortality, with odds ratios (95% confidence interval) of 11.81 (4.21-33.80) and 5.53 (1.90-16.09), respectively. CONCLUSIONS: Hematological parameters observed early during dengue infection may predict its clinical outcomes in infected children. Initial high TLC and low platelet count are potential predictors of fatal outcomes in the course of disease.
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- 2021
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7. VLSI Implementation of Error Correction Codes for Molecular Communication
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S. Pratap Singh, Ruchi Rai, Shashank Awasthi, Dinesh Kumar Singh, and M. Lakshmanan
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Electrical and Electronic Engineering ,Computer Science Applications - Published
- 2023
8. Cyanobacterial Diversity Assessment Under Diverse Environments: A Molecular Approach
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Krishna Kumar Rai, Ruchi Rai, Shilpi Singh, and LC Rai
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General Medicine - Published
- 2022
9. Regulation of antioxidant defense and glyoxalase systems in cyanobacteria
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Sonam Sriwastaw, Ruchi Rai, L.C. Rai, Shilpi Singh, Alka Raj, and Krishna Kumar Rai
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Cyanobacteria ,Antioxidant ,biology ,Physiology ,Abiotic stress ,Chemistry ,medicine.medical_treatment ,Methylglyoxal ,Plant Science ,Glutathione ,Plants ,Pyruvaldehyde ,biology.organism_classification ,medicine.disease_cause ,Photosynthesis ,Antioxidants ,chemistry.chemical_compound ,Biochemistry ,Genetics ,medicine ,Reactive Oxygen Species ,Oxidative stress ,Glyoxalase system - Abstract
Oxidative stress is common consequence of abiotic stress in plants as well as cyanobacteria caused by generation of reactive oxygen species (ROS), an inevitable product of respiration and photosynthetic electron transport. ROS act as signalling molecule at low concentration however, when its production exceeds the endurance capacity of antioxidative defence system, the organisms suffer oxidative stress. A highly toxic metabolite, methylglyoxal (MG) is also produced in cyanobacteria in response to various abiotic stresses which consequently augment the ensuing oxidative damage. Taking recourse to the common lineage of eukaryotic plants and cyanobacteria, it would be worthwhile to explore the regulatory role of glyoxalase system and antioxidative defense mechanism in combating abiotic stress in cyanobacteria. This review provides comprehensive information on the complete glyoxalase system (GlyI, GlyII and GlyIII) in cyanobacteria. Furthermore, it elucidates the recent understanding regarding the production of ROS and MG, noteworthy link between intracellular MG and ROS and its detoxification via synchronization of antioxidants (enzymatic and non-enzymatic) and glyoxalase systems using glutathione (GSH) as common co-factor.
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- 2021
10. Functional characterization of two WD40 family proteins, Alr0671 and All2352, from Anabaena PCC 7120 and deciphering their role in abiotic stress management
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Krishna Kumar Rai, Shilpi Singh, Ruchi Rai, and L. C. Rai
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Stress, Physiological ,Genetics ,Plant Science ,General Medicine ,Agronomy and Crop Science ,Anabaena ,Cadmium ,Droughts ,Transcription Factors ,Plant Proteins - Abstract
WD40 domain-containing proteins are one of the eukaryotes' most ancient and ubiquitous protein families. Little is known about the presence and function of these proteins in cyanobacteria in general and Anabaena in particular. In silico analysis confirmed the presence of WD40 repeats. Gene expression analysis indicated that the transcript levels of both the target proteins were up-regulated up to 4 fold in Cd and drought and 2-3 fold in heat, salt, and UV-B stress. Using a fluorescent oxidative stress indicator, we showed that the recombinant proteins were scavenging reactive oxygen species (ROS) (4-5 fold) more efficiently than empty vectors. Chromatin immunoprecipitation analysis (ChIP) and electrophoretic mobility shift assay (EMSA) revealed that the target proteins function as transcription factors after binding to the promoter sequences. The presence of kinase activity (2-4 fold) in the selected proteins indicated that these proteins could modulate the functions of other cellular proteins under stress conditions by inducing phosphorylation of specific amino acids. The chosen proteins also demonstrated interaction with Zn, Cd, and Cu (1.4-2.5 fold), which might stabilize the proteins' structure and biophysical functions under multiple abiotic stresses. The functionally characterized Alr0671 and All2352 proteins act as transcription factors and offer tolerance to agriculturally relevant abiotic stresses.Alr0671 and All2352 are novel WD40 proteins of Anabaena capable of regulating biochemical functions and abiotic stress tolerance by acting as a transcription factor and mediating DNA-protein interaction.
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- 2022
11. All3048, a DnaJ III homolog of Anabaena sp. PCC7120 mediates heat shock response in E. coli and its N-terminus J-domain stimulates DnaK ATPase activity
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Sonam Sriwastaw, Ruchi Rai, Alka Raj, Vigya Kesari, and L.C. Rai
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Structural Biology ,General Medicine ,Molecular Biology ,Biochemistry - Published
- 2023
12. Functional Characterization of Alr0765, A Hypothetical Protein from Anabaena PCC 7120 Involved in Cellular Energy Status Sensing, Iron Acquisition and Abiotic Stress Management in E. coli Using Molecular, Biochemical and Computational Approaches
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Shweta Rai, Antra Chatterjee, L.C. Rai, Shilpi Singh, and Ruchi Rai
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Anabaena PCC7120 ,adenosyl ligand binding ,0303 health sciences ,Abiotic stress ,Chemistry ,Ligand binding assay ,030302 biochemistry & molecular biology ,Protein domain ,Hypothetical protein ,hypothetical proteins ,Ligand (biochemistry) ,Article ,03 medical and health sciences ,abiotic stress management ,Biochemistry ,redox-active protein ,Protein purification ,Genetics ,iron homeostasis ,Heterologous expression ,Target protein ,Genetics (clinical) ,030304 developmental biology - Abstract
Background:Cyanobacteria are excellent model to understand the basic metabolic processes taking place in response to abiotic stress. The present study involves characterization of a hypothetical protein Alr0765 of Anabaena PCC7120 comprising CBS-CP12 domain and deciphering its role in abiotic stress tolerance.Methods:Molecular cloning, heterologous expression and protein purification using affinity chromatography was performed to obtain native purified protein Alr0765. Energy sensing property of Alr0765 was inferred from its binding affinity with different ligand molecules as analyzed by FTIR and TNP-ATP binding assay. AAS and real time-PCR were applied to evaluate the iron acquisition property and cyclic voltammetry was employed to check redox sensitivity of the target protein. Transcript level under different abiotic stresses as well as spot assay, CFU count, ROS level and cellular H2O2level were used to show potential role of Alr0765 in abiotic stress tolerance. In-silico analysis of Alr0765 included molecular function probability analysis, multiple sequence analysis, protein domain and motif finding, secondary structure analysis, protein ligand interaction, homologous modeling, model refinement and verification and molecular docking was performed with COFACTOR, PROMALS-3D, InterProScan, MEME, TheaDomEx, COACH, Swiss modeller, Modrefiner, PROCHECK, ERRAT, MolProbity, ProSA, TM-align, and Discovery studio respectively.Results:Transcript levels of alr0765 significantly increased by 20, 13, 15, 14.8, 12, 7, 6 and 2.5 fold when Anabaena PCC7120 treated with LC50 dose of heat, arsenic, cadmium, butachlor, salt, mannitol (drought), UV-B, and methyl viologen respectively, with respect to control (untreated). Heterologous expression resulted in 23KDa protein observed on the SDS-PAGE. Immunoblotting and MALDI-TOF-MS/MS followed by MASCOT search analysis confirmed the identity of the protein and ESI/MS revealed the purified protein was a dimer. Binding possibility of Alr0765 with ATP was observed with almost 6-fold increment in relative fluorescence during TNP-ATP binding assay with a ƛ max of 538 nm. FTIR spectra revealed modification in protein confirmation upon binding of Alr0765 with ATP, ADP, AMP and NADH. A 10-fold higher accumulation of iron was observed in digests of E. coli with recombinant vector after induction as compared to control affirms the iron acquisition property of protein. Moreover, generation of redox potential of 146 mV by Alr0765 suggested its probable role in maintaining redox status of the cell under environmental constraints. As per CFU count recombinant E. coli BL21 cells showed about 14.7, 7.3, 6.9, 1.9, 3, 4.9 fold higher number of colonies under heat, cadmium (CdCl2), arsenic (Na3AsO4), salt (NaCl), UV-B and drought (mannitol) respectively compared to pET21a harboring E. coli BL21 cells. Deterioration in cellular ROS level and total cellular H2O2concentration validated stress tolerance ability of Alr0765. In-silico analysis unraveled novel findings and attested experimental findings in determining the role of Alr0765.Conclusion:Alr0765 is a novel CBS-CP12 domain protein that maintains cellular energy level and iron homeostasis provide tolerance against multiple abiotic stresses.
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- 2020
13. Synthetic Biology Tools in Cyanobacterial Biotechnology: Recent Developments and Opportunities
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Krishna Kumar Rai, Ruchi Rai, Shilpi Singh, and L. C. Rai
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- 2022
14. Hits and misses in treatment of ESCPM gram negative infections
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Niharika Dwivedi, Sumit Rai, Pramod Kumar Sharma, and Ruchi Rai
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Microbiology (medical) ,Bacterial Proteins ,Enterobacteriaceae Infections ,Humans ,Microbial Sensitivity Tests ,beta-Lactamases ,Anti-Bacterial Agents - Abstract
Treatment of Enterobacter infections is complex and often associated with development of resistance when wrong antibiotics are chosen for treatment despite in vitro susceptibility. This infectious diseases grand round highlights two cases, how antimicrobial and diagnostic stewardship approach could detect and prevent development of such resistance in - vivo.
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- 2021
15. Molecular and biochemical characterization of All0580 as a methylglyoxal detoxifying glyoxalase II of Anabaena sp. PCC7120 that confers abiotic stress tolerance in E. coli
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Shivam Yadav, Antra Chatterjee, Shweta Rai, Ruchi Rai, Shilpi Singh, and L.C. Rai
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Cyanobacteria ,Hypothetical protein ,Mutant ,02 engineering and technology ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Bacterial Proteins ,Stress, Physiological ,Structural Biology ,Escherichia coli ,Molecular Biology ,030304 developmental biology ,chemistry.chemical_classification ,Abiotic component ,0303 health sciences ,Reactive oxygen species ,biology ,Abiotic stress ,Methylglyoxal ,General Medicine ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Anabaena ,Complementation ,chemistry ,Thiolester Hydrolases ,Reactive Oxygen Species ,0210 nano-technology - Abstract
Abiotic stresses enhance cellular reactive oxygen species (ROS) level which results in toxic methylglyoxal (MG) production. Glyoxalases catalyze the conversion of toxic MG into non-toxic lactic acid whose properties and function are still unknown in cyanobacteria. This is the first attempt to characterize All0580 from Anabaena sp. PCC7120 as GlyII using in silico and wet lab approaches. Data of functional complementation of E. coli GlyII mutant (ΔgloB), enzyme kinetics and ESI-MS analysis suggested that All0580 harbors distinctive GlyII activity. The catalytic efficiency of All0580 (3 × 106 M−1 s−1) is higher than Arabidopsis GlyII. AAS analysis revealed the presence of a binuclear Zn/Fe centre in All0580 active site. The qRT-PCR of the target gene revealed maximum up-regulation in salinity followed by drought, arsenic, heat, and UV-B stresses. BL21/pET-21a-all0580 showed 1.5 to 10 fold increased growth and up to 4 fold decreased intracellular MG level as compared to BL21/pET-21a cells under various abiotic stresses and MG. A 39% drop in ROS generation by BL21/pET-21a-all0580 under MG stress suggested its potential to manage MG toxicity. Above attributes suggest that the hypothetical protein All0580 is a novel GlyII of cyanobacteria which heterologously confers tolerance to multiple abiotic stresses in E. coli.
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- 2019
16. Molecular characterization of two novel proteins All1122 and Alr0750 of Anabaena PCC 7120 conferring tolerance to multiple abiotic stresses in Escherichia coli
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Ruchi Rai, Sonia Sen, Shweta Rai, Shivam Yadav, Lal Chand Rai, Antra Chatterjee, and Chhavi Agrawal
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Models, Molecular ,0301 basic medicine ,Protein Conformation ,Hypothetical protein ,Gene Expression ,Cyanobacteria ,Ligands ,medicine.disease_cause ,03 medical and health sciences ,0302 clinical medicine ,Bacterial Proteins ,Stress, Physiological ,Escherichia coli ,Genetics ,medicine ,Cloning, Molecular ,Heat-Shock Proteins ,Phylogeny ,Abiotic component ,biology ,Anabaena ,Abiotic stress ,General Medicine ,biology.organism_classification ,Complementation ,030104 developmental biology ,Biochemistry ,030220 oncology & carcinogenesis ,Heterologous expression ,Functional genomics - Abstract
In- silico and functional genomics approaches have been used to determine cellular functions of two hypothetical proteins All1122 and Alr0750 of Anabaena sp. PCC 7120. Motif analysis and multiple sequence alignment predicted them as typical α/β ATP binding universal stress family protein-A (UspA) with G-(2×)-G-(9×)-G(S/T) as conserved motif. qRT-PCR data under UV-B, NaCl, heat, As, CdCl2, mannitol and methyl viologen registered approximately 1.4 to 4.3 fold induction of all1122 and alr0750 thus confirming their multiple abiotic stress tolerance potential. The recombinant E. coli (BL21) cells harboring All1122 and Alr0750 showed 12-41% and 23-41% better growth respectively over wild type control under said abiotic stresses thus revalidating their stress coping ability. Functional complementation on heterologous expression in UspA mutant E. coli strain LN29MG1655 (ΔuspA::Kan) attested their UspA family membership. This study tempted us to suggest that recombinant Anabaena PCC 7120 over expressing all1122 and alr0750 might contribute to the nitrogen economy in paddy fields experiencing array of abiotic stresses including drought and nutrient limitation.
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- 2019
17. An Observational Study of Urinary Calcium Excretion in Nephrotic Children
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D. K. Singh, Manoj kumar Verma, Manisha, RK Yadav, Assistance, Resident, Ruchi Rai, and Anubha Shrivastava
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Excretion ,medicine.medical_specialty ,business.industry ,Urology ,medicine ,Observational study ,business ,Urinary calcium - Published
- 2019
18. Does Malaria Co-Infection Alter the Clinical Course in Children Infected with Dengue? Analysis from 623 Indian Children Admitted with Dengue Infection
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Nupur Singh, Ruchi Rai, Dharmendra K Singh, and Bhanu Kiran Bhakhri
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medicine.medical_specialty ,Blood transfusion ,Fever ,medicine.medical_treatment ,030231 tropical medicine ,Hepatosplenomegaly ,Serum albumin ,Dengue fever ,Dengue ,03 medical and health sciences ,0302 clinical medicine ,Antigen ,Internal medicine ,medicine ,Humans ,030212 general & internal medicine ,Child ,biology ,business.industry ,Coinfection ,medicine.disease ,Malaria ,Hospitalization ,Infectious Diseases ,Pediatrics, Perinatology and Child Health ,biology.protein ,Hemoglobin ,medicine.symptom ,business - Abstract
Background Dengue and malaria co-infection has been reported in several case reports. We aim to study effect of malaria co-infection on clinical outcomes of dengue infection. Methods Records of 623 children with dengue infection, based on NS-1 antigen and IgM ELISA testing, were collected. Malaria co-infection was identified in 20 cases, based on peripheral blood smear examination. Clinical and hematological parameters were compared in two groups (malaria co-infection vs. dengue mono-infection). Results Duration of hospitalization was significantly higher in co-infected group. Significantly higher proportion of malaria co-infection cases had hepatosplenomegaly, hemoglobin ≤8 g/dl, serum albumin ≤3 g/dl, serum bilirubin ≥1 mg/dl, serum aspartate aminotransferase ≥500 U/l and serum alanine aminotransferase ≥300 U/l. Number of transfusions (PRBC and platelets) required in malaria co-infection group was higher. Conclusion Malaria co-infection in dengue impacts clinical presentation, hematological parameters, requirement of blood transfusion and morbidity. High index of suspicion is warranted while evaluating febrile patients.
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- 2021
19. Stress Proteins and Signal Transduction in Cyanobacteria
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Ruchi Rai, Krishna Kumar Rai, Shilpi Singh, Alka Raj, and L. C. Rai
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- 2021
20. Early hematological parameters as predictors for outcomes in children with dengue in northern India: A retrospective analysis
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Nupur Singh, Ruchi Rai, Bhanu Kiran Bhakhri, Sumi Nandwani, and Dharmender Kumar Singh
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Adult ,0301 basic medicine ,Microbiology (medical) ,medicine.medical_specialty ,Platelet count ,Mean platelet volume ,RC955-962 ,030231 tropical medicine ,030106 microbiology ,India ,Hematocrit ,Dengue fever ,Dengue ,Leukocyte Count ,03 medical and health sciences ,0302 clinical medicine ,Arctic medicine. Tropical medicine ,Internal medicine ,Major Article ,medicine ,Humans ,Severe Dengue ,Hemorrhagic fever ,Child ,Mean corpuscular volume ,Retrospective Studies ,medicine.diagnostic_test ,Mean corpuscular hemoglobin concentration ,business.industry ,Leucocyte count ,Red blood cell distribution width ,Odds ratio ,Mortality predictors ,medicine.disease ,Confidence interval ,Infectious Diseases ,Parasitology ,business - Abstract
INTRODUCTION: Dengue presents with a variable clinical course, ranging from mild illness to potentially fatal hemorrhage and shock. We aimed to evaluate the capabilities of various hematological parameters observed early in the course of illness for predicting the clinical outcomes of illness. METHODS: We retrospectively analyzed the records of children admitted in the pediatric inpatient services of the institute with dengue between 2017 and 2019. We determined the relationships between the hematological parameters observed during the first evaluation and the various clinical outcomes. RESULTS: We evaluated data from 613 patients (age range, 26 days to 17 years). Of these, 29.85% exhibited fever with warning signs, and 8.97% had severe dengue. Lower values of hemoglobin, platelet count, mean corpuscular volume, mean corpuscular hemoglobin concentration, and mean platelet volume, and higher values of total leukocyte count (TLC), hematocrit, and red cell distribution width variably correlated with numerous clinical outcomes-duration of hospital stay, development of complications, requirement of blood component transfusion, inotropic support, and mortality. Among the parameters, TLC ≥20,000/mL and initial platelet count ≤20,000/mL significantly associated with mortality, with odds ratios (95% confidence interval) of 11.81 (4.21-33.80) and 5.53 (1.90-16.09), respectively. CONCLUSIONS: Hematological parameters observed early during dengue infection may predict its clinical outcomes in infected children. Initial high TLC and low platelet count are potential predictors of fatal outcomes in the course of disease.
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- 2021
21. Fluid restriction in term neonates with moderate to severe perinatal asphyxia: A randomised controlled trial
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Ruchi Rai, Dr.Vasudha Tomar, and D. K. Singh
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Moderate to severe ,Pediatrics ,medicine.medical_specialty ,business.industry ,Term neonates ,medicine.disease ,Confidence interval ,law.invention ,Cerebral edema ,Perinatal asphyxia ,Randomized controlled trial ,law ,Relative risk ,Medicine ,Fluid restriction ,business - Abstract
Introduction: Management of newborns who suffer perinatal asphyxia is primarily based on supportive management, of which fluid and electrolyte management plays a very important role. We studied the role of restriction of fluids in the first 72 h in term neonates suffering from moderate to severe perinatal asphyxia. Methods: Term newborns with moderate to severe perinatal asphyxia were randomised to receive full or restricted fluids (25 newborns each) during the first 72 h of life. The primary outcome measures were mortality and neurological status at discharge. Results: Mortality among the full (FF) and restricted fluid (RF) groups was not significantly different, 4 in the FF group and 3 in the RF group with a relative risk (RR) of 1.52 [confidence interval (CI) 0.38-6.04]. The neurological status at discharge was also comparable in both the groups with RR (CI) 0.61 (0.22-1.7). Conclusion: Routine restriction of fluids in term neonates with moderate to severe perinatal asphyxia does not have any advantage.
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- 2018
22. Effect of vitamin D supplementation in children with severe acute malnutrition in a nutritional rehabilitation centre: a randomized controlled trial
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Priya Sharma, Anubha Srivastava, D. K. Singh, Ruchi Rai, and Manisha Maurya
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Pediatrics ,medicine.medical_specialty ,business.industry ,Mortality rate ,Severe Acute Malnutrition ,medicine.disease ,vitamin D deficiency ,law.invention ,Randomized controlled trial ,Informed consent ,law ,medicine ,Vitamin D and neurology ,medicine.symptom ,business ,Nutritional rehabilitation ,Wasting - Abstract
Background: According to World Health Organization (2013) approximately 35% of the under-fivemortalities are due to nutrition related factors & 4.4% of deaths are due to severe wasting. It has been found that Vitamin D levels are low in children with malnourished and very sick children. Even the prevalence of vitamin D deficiency is very high in Indian subcontinent. In WHO recommendations for the management of severe acute malnutrition there is no role of vitamin D supplementation. Objective: To study the effect of vitamin D supplementation on severe acute malnourished children admitted in nutritional rehabilitation Centre. Design: Single blinded Randomized controlled, parallel group trial. Setting: Nutritional Rehabilitation Centre (NRC) of a tertiary care hospital. Participants: 70 severe acute malnourished children aged 6 months to 59 months admitted in the NRC were randomized by computer generated random table. Intervention: 6 lakhs IU vitamin D was given intramuscularly on day one of therapy after an informed consent to the study group and other group was given only management of SAM. Main Outcome measure: outcome indicators of NRC i.e. cure rate, death rate, non-responders, relapse rate. Results: There was no significant difference in the outcome indicators of NRC i.e cured, death, non-response and relapse rate (p=0.32) and average weight gain (p= 0.38) and length of stay (p=0.42) between the two groups at discharge but wasting (p=0.02 on first, p=0.008 on third and p=0.04 on fourth follow ups respectively) improved significantly on follow ups. Conclusions: vitamin D supplementation does not have any significant improvement in the outcome indicators at discharge but significantly improves wasting on follow up.
- Published
- 2018
23. Neonatal Salmonella Paratyphi B Sepsis: A Case Report
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Sumit Rai, Ruchi Rai, Sumi Nandwani, and D. K. Singh
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medicine.diagnostic_test ,medicine.drug_class ,business.industry ,Antibiotics ,Salmonella paratyphi B ,medicine.disease ,complex mixtures ,Typhoid fever ,Microbiology ,Sepsis ,fluids and secretions ,Pediatrics, Perinatology and Child Health ,medicine ,bacteria ,Blood culture ,business - Abstract
Salmonella Paratyphi B infection is rare in newborns. We present the case of a 26 d old baby with Salmonella Paratyphi B sepsis. The baby responded well to 14 d of antibiotics. A prompt blood culture sample should always be taken before starting antibiotics.
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- 2020
24. Correspondence
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Vandana Jain, Madhulika Kabra, Pradyumna Pan, Rajnish Nema, Jogender Kumar, Amitabh Singh, Amit Upadhyay, Priya Tomar, Aakriti Gupta, Umesh Kapil, Nita Radhakrishnan, Ruchi Rai, Mahesh Kamate, Arti Maria, Ankit Verma, G. P. Prashanth, Uwe Werner Fass, Shahid Akhtar Siddiqui, and Anubha Shrivastava
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Pediatrics, Perinatology and Child Health - Published
- 2017
25. Identification and functional characterization of four novel aldo/keto reductases in Anabaena sp. PCC 7120 by integrating wet lab with in silico approaches
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Shweta Rai, Chhavi Agrawal, Antra Chatterjee, Shivam Yadav, Ruchi Rai, Sonia Sen, and L.C. Rai
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0301 basic medicine ,Cyanobacteria ,Aldo-keto reductase ,biology ,Protein family ,Anabaena ,In silico ,Aldo-Keto Reductases ,Sequence Homology ,General Medicine ,biology.organism_classification ,medicine.disease_cause ,Genome ,Substrate Specificity ,03 medical and health sciences ,030104 developmental biology ,Bacterial Proteins ,Biochemistry ,Genetics ,medicine ,Ectopic expression ,Escherichia coli - Abstract
Aldo/keto reductases (AKRs) constitute a multitasking protein family that catalyzes diverse metabolic transformations including detoxification of stress generated reactive aldehydes. Yet this important protein family is poorly understood particularly in cyanobacteria, the ecologically most diverse and significant group of micro-organisms. Present study is an attempt to characterize all putative AKRs of Anabaena sp. PCC 7120. In silico analysis, it revealed the presence of at least four putative AKRs in Anabaena PCC7120 genome. All four proteins share less than 40% sequence identity with each other and also with the identified members of AKR superfamily and hence deserve to be assigned in new families. Dissimilarity in sequences is also reflected through their substrate specificity. While reduction of trans-2-nonenal, a LPO-derived reactive aldehyde was common across the four proteins, these proteins were found to be activated during heat, salt, Cd, As, and butachlor treatments, and their ectopic expression in Escherichia coli conferred tolerance to the above abiotic stresses. These findings affirm the role of AKRs in providing a broad tolerance to environmental stresses conceivably by detoxifying the stress-generated reactive aldehydes.
- Published
- 2017
26. To study the incidence of anemia in HIV-infected children on zidovudine-based highly active antiretroviral therapy regimen
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Ruchi Rai, Dharmendra K Singh, Manisha Maurya, and Shruthi Badrinath
- Subjects
Pediatrics ,medicine.medical_specialty ,Anemia ,business.industry ,Incidence (epidemiology) ,Public Health, Environmental and Occupational Health ,Dermatology ,medicine.disease ,Antiretroviral therapy ,Regimen ,Zidovudine ,Infectious Diseases ,Hiv infected ,medicine ,business ,Letters to Editor ,medicine.drug - Published
- 2020
27. Linear Verrucous Epidermal Nevus
- Author
-
Ruchi Rai and Arpit Gupta
- Subjects
Male ,medicine.medical_specialty ,Maternal and child health ,business.industry ,Infant, Newborn ,Nevus, Sebaceous of Jadassohn ,medicine.disease ,Linear verrucous epidermal nevus ,Prognosis ,Dermatology ,Diagnosis, Differential ,Pediatrics, Perinatology and Child Health ,Pediatric surgery ,Medicine ,Nevus ,Humans ,business - Published
- 2019
28. Abiotic Stress-Mediated Oxidative Damage in Plants
- Author
-
Lal Chand Rai, Shilpi Singh, Ruchi Rai, Alka Shankar, Antra Chatterjee, and Shweta Rai
- Subjects
Oxidative damage ,Chemistry ,Abiotic stress ,Cell biology - Published
- 2019
29. Beneficial Microorganisms and Abiotic Stress Tolerance in Plants
- Author
-
Vigya Kesari, Ruchi Rai, L.C. Rai, Amit Kumar Patel, Shilpi Singh, Alka Shankar, and Antra Chatterjee
- Subjects
Abiotic stress ,Botany ,Beneficial organism ,Biology - Published
- 2019
30. Alr2954 of Anabaena sp. PCC 7120 with ADP-ribose pyrophosphatase activity bestows abiotic stress tolerance in Escherichia coli
- Author
-
Prashant Kumar Singh, Alok Kumar Shrivastava, Lal Chand Rai, Shilpi Singh, Antra Chatterjee, and Ruchi Rai
- Subjects
0301 basic medicine ,Phosphatase ,Hypothetical protein ,Nudix hydrolase ,Substrate Specificity ,03 medical and health sciences ,chemistry.chemical_compound ,Deoxyadenine Nucleotides ,Stress, Physiological ,Ribose ,Escherichia coli ,Genetics ,Computer Simulation ,Amino Acid Sequence ,Cloning, Molecular ,Pyrophosphatases ,Binding site ,Adenosine Diphosphate Ribose ,Pyrophosphatase ,Binding Sites ,Sequence Homology, Amino Acid ,biology ,Anabaena ,Abiotic stress ,Hydrolysis ,Deoxyguanine Nucleotides ,General Medicine ,biology.organism_classification ,Molecular Docking Simulation ,030104 developmental biology ,chemistry ,Biochemistry - Abstract
In silico derived properties on experimental validation revealed that hypothetical protein Alr2954 of Anabaena sp. PCC7120 is ADP-ribose pyrophosphatase, which belongs to nudix hydrolase superfamily. Presence of ADP-ribose binding site was attested by ADP-ribose pyrophosphatase activity (K m 44.71 ± 8.043 mM, V max 7.128 ± 0.417 μmol min−1 mg protein−1, and K cat/K m 9.438 × 104 μM−1 min−1). Besides ADP-ribose, the enzyme efficiently hydrolyzed various nucleoside phosphatases such as 8-oxo-dGDP, 8-oxo-dADP, 8-oxo-dGTP, 8-oxo-dATP, GDP-mannose, ADP-glucose, and NADH. qRT-PCR analysis of alr2954 showed significant expression under different abiotic stresses reconfirming its role in stress tolerance. Thus, Alr2954 qualifies to be a member of nudix hydrolase superfamily, which serves as ADP-ribose pyrophosphatase and assists in multiple abiotic stress tolerance.
- Published
- 2016
31. Does routine antibiotic therapy benefit children with severe acute malnutrition?
- Author
-
Ruchi Rai and Joseph L. Mathew
- Subjects
medicine.medical_specialty ,business.industry ,Maternal and child health ,030231 tropical medicine ,Severe Acute Malnutrition ,03 medical and health sciences ,0302 clinical medicine ,Antibiotic therapy ,Pediatrics, Perinatology and Child Health ,Pediatric surgery ,medicine ,030212 general & internal medicine ,Intensive care medicine ,business - Published
- 2016
32. All4894 encoding a novel fasciclin (FAS-1 domain) protein of Anabaena sp. PCC7120 revealed the presence of a thermostable β-glucosidase
- Author
-
Ruchi Rai, Antra Chatterjee, L.C. Rai, Shilpi Singh, Krishna Kumar Rai, and Shweta Rai
- Subjects
0106 biological sciences ,0301 basic medicine ,Protein moonlighting ,chemistry.chemical_classification ,biology ,Molecular mass ,Anabaena ,Hypothetical protein ,Protein domain ,Cellobiose ,biology.organism_classification ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Enzyme ,chemistry ,Biochemistry ,Heterologous expression ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
In an attempt to mine cyanobacterial genes of potential biotechnological applications, the hypothetical protein All4894 of Anabaena PCC7120, following cloning, heterologous expression, purification and biochemical analysis, revealed the presence of a thermostable β-glucosidase. The glycosylated protein showed apparent molecular mass of ~18.0 kDa, while the purified enzyme depicted activity over wide pH (2.0–9.0) range and 85% stability up to 100 °C. All4894 encoding fascilin-1 domain showed higher specific activity to natural substrate cellobiose (Km = 0.75 mM and Vmax = 0.416 mMmin−1 mg−1) as compared to p-nitrophenyl-β-D-glucopyranoside. Quantitative reverse transcription polymerase chain reaction analysis (qRT-PCR) of all4894 revealed 4.0 to 16.0 fold elevated transcript under salinity, heat, arsenic, cadmium, UV-B and butachlor. The ectopic expression of All4894 in E. coli BL21 (DE3) reaffirmed its stress management capability. In view of the multiple functional attributes i.e. cell adhesion and abiotic stress tolerance All4894 may be regarded as “moonlighting protein” having a novel biomolecule for biotechnological applications including bioethanol production.
- Published
- 2020
33. Contributors
- Author
-
Chetana Aggarwal, Ruchi Agrawal, Mohammad W. Ansari, Mehmet C. Baloglu, Chittranjan Bhatia, Pankaj Bhatt, Deepesh Bhatt, Megha D. Bhatt, Subrata N. Bhowmik, Yue Cao, Govindan Chandrasehar, Antra Chatterjee, Navneet S. Chaudhary, Meenakshi Dangwal, Baliah V. David, Harcharan S. Dhaliwal, Kashyap K. Dubey, Sarvajeet S. Gill, Songül Gürel, Ekrem Gürel, null Hemansi, Baskaran Kannan, Rekha Kansal, Ratna Karan, Musa Kavas, Mujeebur R. Khan, Krishan Kumar, Vinod Kumar, Ajay Kumar, Satendra Kumar, Govind Kumar, Punit Kumar, Xue Liu, Lena Q. Ma, Shivaraj M. Mathad, Fayaz A. Mohiddin, Prasun K. Mukherjee, Tapan K. Nailwal, Manoj Nath, Kathirvel Nithya, Keishi Osakabe, Yuriko Osakabe, Balasubramanian Parameswari, Hemant J. Patil, Ramabhau T. Patil, Basavaprabhu L. Patil, Ratna Prabha, Siddegowda R. Prasad, Ram Prasad, Ruchi Rai, Shweta Rai, Lal C. Rai, Sridhar Ranganathan, Vavilala R. Rao, Bala Rathinasabapathi, Jitendra K. Saini, null Sapna, Alok Satlewal, Anil K. Saxena, Pamila N. Selvam, Sonia Sen, Manju Sharma, Krishna K. Sharma, Alok K. Shrivastava, Bhuvnesh Shrivastava, Dhananjaya P. Singh, Ishwar Singh, Prashant K. Singh, Shilpi Singh, Vipin K. Singh, Prem P. Singh, Amit K. Singh, Chandra P. Singh, Dinesh Singh, Deepti Singh, Bijender Singh, Amarjeet Singh, Shigeo S. Sugano, Vijay Tripathi, Narendra Tuteja, Amit Verma, Rasappa Viswanathan, Shivam Yadav, Ajar N. Yadav, Pranjal Yadava, and Mahesh S. Yandigeri
- Published
- 2018
34. Cyanobacterial Biodiversity and Biotechnology: A Promising Approach for Crop Improvement
- Author
-
Shilpi Singh, Sonia Sen, Antra Chatterjee, Shivam Yadav, Ruchi Rai, Shweta Rai, Prashant Kumar Singh, Alok Kumar Shrivastava, and Lal Chand Rai
- Subjects
Cyanobacteria ,biology ,business.industry ,media_common.quotation_subject ,Nitrogen assimilation ,Biodiversity ,Genetically modified crops ,biology.organism_classification ,Photosynthesis ,Adaptability ,Biotechnology ,Crop ,Nitrogen fixation ,business ,media_common - Abstract
Cyanobacteria due to their remarkable evolutionary advances such as the presence of oxygenic photosynthesis have been considered as an ideal system for plant-based studies in order to assess fundamental biochemical processes like carbon and nitrogen assimilation and photosynthesis processes. Moreover, the exclusive ability of both photosynthesis and nitrogen fixation together with adaptability to various environmental fluctuations of few genera makes them ubiquitous. Cyanobacterial genes involved in carbon metabolism, fatty acid biosynthesis, and pigment biosynthesis have been exploited as substitute for homologous gene sources, targeting enhanced plant productivity and nutritional values. Present chapter sheds light on key contributions of cyanobacterial biodiversity and biotechnology along with the future prospects for developing transgenic crops of high yield and nutritive value utilizing cyanobacterial genes.
- Published
- 2018
35. Application of Allele-Specific (AS-PCR) Marker for Identification of High-Molecular-Weight Glutenin Subunits (HMW-GS) at the GluB-1 Locus in Bread Wheat (Triticum aestivum L.)
- Author
-
Bhagwat Sg, B. K. Das, Shilpi Singh, and Ruchi Rai
- Subjects
Genetics ,Glutenin ,biology.protein ,Pharmacology (medical) ,Locus (genetics) ,Biology ,Allele specific - Published
- 2018
36. Abacavir-based Regimen for HIV-infected Children and Adolescents
- Author
-
Anubha Srivastava, Ruchi Rai, Manisha Maurya, D. K. Singh, and Prince Pareek
- Subjects
Male ,Pediatrics ,medicine.medical_specialty ,Adolescent ,Anti-HIV Agents ,Treatment outcome ,HIV Infections ,Pharmacotherapy ,immune system diseases ,Abacavir ,Antiretroviral Therapy, Highly Active ,Hiv infected ,Pediatric surgery ,Humans ,Medicine ,Child ,business.industry ,Infant ,virus diseases ,Antiretroviral therapy ,Dideoxynucleosides ,Hypersensitivity reaction ,Regimen ,Treatment Outcome ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Drug Therapy, Combination ,Female ,business ,medicine.drug - Abstract
We studied 48 children receiving abacavir-based HAART regimen, over a period of one-year for side effects and failure rates. None of the children developed hypersensitivity reaction. The CD4 count significantly improved from the time of enrolment till 12 months of therapy while the failure rate was 14.5%.
- Published
- 2019
37. Correspondence
- Author
-
Prasad Krishnan, Birendra Rai, Farhana Sharif, Ruchi Rai, D. K. Singh, Shambhawi Roy, Aashima Dabas, Sonali Mitra, Rakesh Mondal, Abdul Razak, N. Karthik Nagesh, Wei Zhang, Zonghong Shao, Tanigasalam Vasanthan, C. Venkatesh, Ahmar Shamim, Kamran Afzal, T. Jacob John, and C. E. Eapen
- Subjects
Lucid interval ,medicine.medical_specialty ,Hematoma ,business.industry ,Pediatrics, Perinatology and Child Health ,medicine ,Posterior fossa ,Decompensation ,medicine.symptom ,medicine.disease ,business ,Surgery - Published
- 2015
38. Double Dose Versus Standard Dose Hepatitis B Vaccine in HIV-infected Children: A Randomized Controlled Trial
- Author
-
Anubha Srivastava, D. K. Singh, Manisha Maurya, Ruchi Rai, and Shahid Akhtar Siddiqui
- Subjects
Male ,medicine.medical_specialty ,Hepatitis B vaccine ,Adolescent ,HIV Infections ,Gastroenterology ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Randomized controlled trial ,law ,030225 pediatrics ,Internal medicine ,medicine ,Humans ,Hepatitis B Vaccines ,030212 general & internal medicine ,Hepatitis B Antibodies ,Child ,Immunodeficiency ,biology ,Double dose ,business.industry ,Infant ,medicine.disease ,Hepatitis B ,Vaccination ,Titer ,Immunization ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,biology.protein ,Female ,Antibody ,business - Abstract
To compare the efficacy of double dose (20 μg) with standard dose (10 μg) of hepatitis B vaccine in HIV-infected children. Unvaccinated HIV-infected children were randomized to receive 3 doses of double dose (N=27) or standard dose (N=28) of recombinant Hepatitis B vaccine. Anti-HBs antibody titres were measured 3 mo after the last dose. An antibody titre ≥10 mIU/mL 12 weaks after the third dose was considered as serporotection. Seroprotection was achieved by 17 (60.7%) children in standard dose group against 20 (74%) in the double dose group [RR (95%CI) 0.8 (0.17-1.7); P=0.29]. CD4 count < 500 cells/mm3 was significantly associated with lower rates of seroprotection. Double dose of hepatitis B vaccine does not seem to provide any advantage when compared to standard dose in HIV-infected children.
- Published
- 2017
39. UVR8 Signalling, Mechanism and Integration with other Pathways
- Author
-
Shweta Rai, Sonia Sen, Shilpi Singh, Alok Kumar Shrivastava, Ruchi Rai, Antra Chatterjee, Shivam Yadav, and L.C. Rai
- Subjects
UVR8 ,Signalling ,Cytoplasm ,Biology ,Mechanism (sociology) ,Cell biology - Published
- 2017
40. Impact of UV-B Exposure on Phytochrome and Photosynthetic Machinery
- Author
-
Shweta Rai, Antra Chatterjee, Shilpi Singh, Shivam Yadav, Ruchi Rai, Chhavi Agrawal, Sonia Sen, Alok Kumar Shrivastava, and Lal Chand Rai
- Subjects
0106 biological sciences ,0301 basic medicine ,03 medical and health sciences ,030104 developmental biology ,Phytochrome ,Photosystem II ,Chemistry ,Botany ,Biophysics ,Uv b irradiation ,Photosynthesis ,01 natural sciences ,010606 plant biology & botany - Published
- 2017
41. Cyanobacteria: Role in Agriculture, Environmental Sustainability, Biotechnological Potential and Agroecological Impact
- Author
-
Alka Shankar, Shweta Rai, L.C. Rai, Ruchi Rai, Shivam Yadav, and Shilpi Singh
- Subjects
Sustainable development ,Agroforestry ,business.industry ,media_common.quotation_subject ,Biology ,Photosynthesis ,Adaptability ,Agriculture ,Sustainability ,Nitrogen fixation ,Ecosystem ,business ,Agroecology ,media_common - Abstract
Cyanobacteria, a group of photosynthetic prokaryotes, have drawn the attention of agricultural scientists due to their notable key features such as the presence of oxygenic photosynthesis along with nitrogen fixation, ease in genetic manipulation and excellent adaptability to various environmental vagaries. Moreover, they have been recognized as an opulent source of various bioactive compounds possessing antibacterial, antiviral, antifungal and anticancer activities. They are also contributing positively in bioremediation and sustainable development of ecosystem. Furthermore, the presence of novel genes opens new ways for generation of transgenic crops with improved productivity and nutritional values. In view of the above, the present chapter is an attempt to cast light on cyanobacterial assistance and their potential role in sustainable development of agriculture and ecosystem.
- Published
- 2017
42. Development and Validation of Scar Marker for Stem Rust Resistance Gene Sr26 in Wheat (Triticum aestivum L.)
- Author
-
Ruchi Rai, B. K. Das, and Bhagwat Sg
- Subjects
Puccinia ,Genetics ,History ,education.field_of_study ,biology ,Population ,food and beverages ,biology.organism_classification ,Stem rust ,Rust ,Computer Science Applications ,Education ,RAPD ,Genotype ,education ,Gene ,Ug99 - Abstract
The stem rust resistance gene Sr26 imparts resistance to all the virulent pathotypes of stem rust (Puccinia graminis f. sp. tritici) including a new race of pathogen named TTKSK (syn.Ug99). Wheat genotypes including non-carrier Kalyan Sona (-Sr26) and carrier Kite (+Sr26) of the Sr26 gene were analysed using polymerase chain reactions and a RAPD marker OPAE07620 was found to link with the desired trait. Linkage between the marker OPAE07620 and rust resistance phenotype was confirmed by analyzing F2 population obtained from a cross between a resistant and susceptible genotype. The Random Amplified Polymorphic DNA (RAPD) marker was converted into sequence characterized amplified region (SCAR) marker SCOPAE07620. The marker was validated in another segregating population and 45 wheat genotypes including carrier and non-carriers of Sr26 gene. The marker developed in this study can be used for pyramiding of the Sr26 gene with other major resistance genes that are effective against the TTKSK lineage (Ug99) which will help in attaining durable resistance against a disease that poses a serious threat to global wheat production.
- Published
- 2017
43. Alr2321, a multiple stress inducible glyoxalase I of Anabaena sp. PCC7120 detoxifies methylglyoxal and reactive species oxygen
- Author
-
Ruchi Rai, L.C. Rai, Prashant Kumar Singh, and Shweta Rai
- Subjects
inorganic chemicals ,Cyanobacteria ,Health, Toxicology and Mutagenesis ,Amino Acid Motifs ,010501 environmental sciences ,Aquatic Science ,01 natural sciences ,Substrate Specificity ,03 medical and health sciences ,chemistry.chemical_compound ,Lactoylglutathione lyase ,Stress, Physiological ,Amino Acid Sequence ,RNA, Messenger ,Phylogeny ,030304 developmental biology ,0105 earth and related environmental sciences ,Abiotic component ,chemistry.chemical_classification ,0303 health sciences ,Reactive oxygen species ,biology ,Abiotic stress ,Methylglyoxal ,Lactoylglutathione Lyase ,Pyruvaldehyde ,biology.organism_classification ,Anabaena ,Lactic acid ,Kinetics ,chemistry ,Biochemistry ,Metals ,Structural Homology, Protein ,Inactivation, Metabolic ,biology.protein ,Reactive Oxygen Species ,Intracellular - Abstract
Abiotic stresses enhance the cellular level of reactive oxygen species (ROS) which consequently leads to toxic methylglyoxal (MG) production. Glyoxalases (GlyI & GlyII) catalyze the conversion of toxic MG into non-toxic lactic acid but their properties and functions have been overlooked in cyanobacteria. This is the first attempt to conduct a genome-wide analysis of GlyI protein (PF00903) from Anabaena sp. PCC7120. Out of total nine GlyI domain possessing proteins, only three (Alr2321, Alr4469, All1022) harbour conserve His/Glu/His/Glu metal binding site at their homologous position and are deficient in conserved region specific for Zn2+ dependent members. Their biochemical, structural and functional characterization revealed that only Alr2321 is a homodimeric Ni2+ dependent active GlyI with catalytic efficiency 11.7 × 106 M−1 s−1. It has also been found that Alr2321 is activated by various divalent metal ions and has maximum GlyI activity with Ni2+ followed by Co2+ > Mn2+ > Cu2+ and no activity with Zn2+. Moreover, the expression of alr2321 was found to be maximally up-regulated under heat (19 fold) followed by cadmium, desiccation, arsenic, salinity and UV-B stresses. BL21/pGEX-5X2-alr2321 showed improved growth under various abiotic stresses as compared to BL21/pGEX-5X2 by increased scavenging of intracellular MG and ROS levels. Taken together, these results suggest noteworthy links between intracellular MG and ROS, its detoxification by Alr2321, a member of GlyI family of Anabaena sp. PCC7120, in relation to abiotic stress.
- Published
- 2019
44. Immunogenicity of Hepatitis B Vaccine in HIV Exposed Uninfected Infants
- Author
-
Rajnish Kumar, Anudita Bhargava, Ruchi Rai, Manisha Maurya, and Dharmendra K Singh
- Subjects
0301 basic medicine ,Hepatitis B vaccine ,Statistics as Topic ,Human immunodeficiency virus (HIV) ,India ,HIV Infections ,Adaptive Immunity ,medicine.disease_cause ,03 medical and health sciences ,Pregnancy ,HIV Seronegativity ,medicine ,Humans ,Hepatitis B Vaccines ,Prospective Studies ,Pregnancy Complications, Infectious ,Prospective cohort study ,business.industry ,Immunogenicity ,Infant ,Hepatitis B ,medicine.disease ,Acquired immune system ,Virology ,030104 developmental biology ,Pediatrics, Perinatology and Child Health ,Immunology ,Female ,business - Abstract
There is paucity of knowledge about the immunogenicity of vaccines in infants who have been exposed to HIV in-utero but have remained uninfected. The authors studied the immunogenicity of 3 doses of recombinant hepatitis B vaccine at 6,10,14 wk of age in HIV exposed but uninfected (HEU) infants. After 3 mo of last dose of the vaccine, out of 26 infants, 23 (89.5 %) infants were found to be responders (Anti HBs IgG titres ≥ 10 mIU/ml) and 3 (11.5 %) babies remained non responders (Anti HBs IgG titres < 10 mIU/ml). The proportion of babies who were non responders were higher when compared to similar studies done on unexposed and uninfected infants, suggesting a poorer immunogenicity of hepatitis B vaccine in these infants.
- Published
- 2015
45. PREVALENCE OF THROMBOCYTOPENIA AND ITS RELATION WITH WHO CLINICAL AND IMMUNOLOGICAL STAGING AMONG HUMAN IMMUNODEFICIENCY VIRUS-INFECTED CHILDREN
- Author
-
Durgesh Kumar, Dharmendra Kumar Singh, Dinesh Kumar, and Ruchi Rai
- Subjects
Pediatrics ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Human immunodeficiency virus (HIV) ,Complete blood count ,Physical examination ,Disease ,medicine.disease ,medicine.disease_cause ,Tertiary care ,Acquired immunodeficiency syndrome (AIDS) ,Immunology ,Ambulatory ,medicine ,Observational study ,business - Abstract
Objective: The aim was to study the thrombocytopenia in human immunodeficiency virus (HIV) infected children and its relation with WHO clinical and immunological HIV/AIDS staging. Study Design: Observational analytic cross-sectional study. Materials and Methods: 47 ambulatory and clinically stable HIV-infected children (confirmed by enzyme-linked immunosorbent assay for HIV-1 and HIV-2) aged 18 months-18 years attending the out-patient Department of anti-retroviral therapy center at tertiary care setting, were included in this study. Detailed history was taken, and thorough clinical examination was done in all cases. Blood sample for complete blood count and CD4 count was taken. Primary Outcome: Thrombocytopenia in HIV-infected children. Secondary Outcome: WHO clinical and immunological HIV/AIDS staging in HIV-infected children and its relation to thrombocytopenia. Results: Of 47 studied children, thrombocytopenia was found in 14 (29.78%) cases. Patients with thrombocytopenia were found in all stages of the disease; however, it was strongly associated with increasing immunological stages (correlation coefficient, r = 0.948). Conclusion: Thrombocytopenia commonly occurs in children with HIV and its occurrence increases with an increase in WHO clinical and immunological HIV/AIDS staging. Key words: Human immunodeficiency virus, Immunological human immunodeficiency virus/AIDS staging, Thrombocytopenia, WHO clinical human immunodeficiency virus/AIDS staging
- Published
- 2014
46. Overexpression of phytochelatin synthase (pcs) enhances abiotic stress tolerance by altering the proteome of transformed Anabaena sp. PCC 7120
- Author
-
Neha Chaurasia, Lal Chand Rai, Ruchi Rai, Shivam Yadav, Yogesh Mishra, and Antra Chatterjee
- Subjects
0106 biological sciences ,0301 basic medicine ,Proteome ,Gene Expression ,Plant Science ,Biology ,01 natural sciences ,law.invention ,03 medical and health sciences ,Bacterial Proteins ,law ,Stress, Physiological ,Phytochelatins ,Amino acid synthesis ,chemistry.chemical_classification ,Coproporphyrinogen III oxidase ,Anabaena ,Wild type ,Cell Biology ,General Medicine ,biology.organism_classification ,Aminoacyltransferases ,Molecular biology ,030104 developmental biology ,Dihydroorotase ,chemistry ,Biochemistry ,Enzyme Induction ,Recombinant DNA ,Protein folding ,Phytochelatin ,010606 plant biology & botany - Abstract
The present study provides data on the insertion of an extra copy of phytochelatin synthase (alr0975) in Anabaena sp. PCC 7120. The recombinant strain (AnFPN-pcs) compared to wild type showed approximately 22.3% increase in growth rate under UV-B, NaCl, heat, CuCl2, carbofuran, and CdCl2. It also registered 2.25-fold enhanced nitrogenase activity and 5-fold higher phytochelatin production. A comparison of the protein profile of wild type with the recombinant strain revealed that recombinant strain accumulated proteins belonging to the following categories: (i) detoxification (nutrient stress induced DNA binding protein, Mn-SOD, Alr0946 (CalA)), (ii) protein folding and modification (molecular chaperone DnaK, FKBP-type peptidyl-prolyl cis-trans isomerase), (iii) nucleotide and amino acid biosynthesis (dihydroorotase and Ketol-acid reductoisomerase), (iv) photosynthesis and respiration (coproporphyrinogen III oxidase, phycocyanin alpha chain, ferredoxin-NADP+ reductase), and (v) transport (sugar transport ATP-binding protein). Thus, it can be concluded that, above category proteins with their respective role in scavenging reactive oxygen species, proper folding of unfolded proteins, and protection of protein from degradation, sustained carbon fixation and energy pool and active transport of sugar together conceivably help the recombinant cyanobacterium (AnFPN-pcs) to cope with abiotic stress employed in the present study. Such recombinant strains have potential for future use as biofertilizer.
- Published
- 2016
47. Overexpression of AhpC enhances stress tolerance and N2-fixation in Anabaena by upregulating stress responsive genes
- Author
-
Karl-Josef Dietz, Prashant Kumar Singh, Shilpi Singh, Alok Kumar Shrivastava, Sarita Pandey, Ruchi Rai, and Lal Chand Rai
- Subjects
0301 basic medicine ,Transcriptional Activation ,Mutant ,Biophysics ,Biochemistry ,Transformation ,Superoxide dismutase ,03 medical and health sciences ,chemistry.chemical_compound ,AhpC ,Gene cloning ,Bacterial Proteins ,Nitrogen Fixation ,Transcript regulation ,Molecular Biology ,Heterocyst ,biology ,Superoxide ,Anabaena ,Wild type ,Gene Expression Regulation, Bacterial ,Peroxiredoxins ,APX ,biology.organism_classification ,Molecular biology ,Up-Regulation ,Oxidative Stress ,030104 developmental biology ,chemistry ,Catalase ,biology.protein - Abstract
The study explores the significance of peroxides in regulating the CO2- and N2-fixation capacities in Anabaena sp. PCC7120. To this end Anabaena strains were generated carrying an extra copy of ahpC (An+ahpC) or by deleting from their endogenous functional ahpC (AnΔahpC). AhpC levels were 2.2- to 6.0-fold higher in An+ahpC than in wild type. An+ahpC revealed 1.4- to 2-fold upregulation of photosystems I and II, nitrogenase, superoxide dismutase and catalase activities while same activities were 1.3- to 2.5-fold downregulated in the insertional mutant (AnΔahpC) compared to the wild type. Peroxide, superoxide and malondialdehyde contents were low in An+ahpC and high in AnΔahpC. Growth was inhibited in AnΔahpC by approximately 40-60% compared to a 33-40% enhanced growth in An+ahpC under selected stresses. Most interestingly, heterocyst frequency was increased in An+ahpC. In order to address transcriptional and posttranscriptional effects, transcripts of genes including groEL, fld, kat, gor, gst, dps, bfr, tf, sodA, dnaK, prx, uspA, pcs and apx were quantified and found to be increased 1.33- to 7.70-fold in unstressed and 1.76- to 13.80-fold in stressed An+ahpC. In a converse manner, they were downregulated by 1.20- to 7.50-fold in unstressed and 1.23 to 10.20-fold in stressed AnΔahpC. It is concluded that the level of AhpC controls a major set of metabolic and developmental genes in normal and stress conditions and thus likely is in the core of the redox regulatory system of Anabaena.
- Published
- 2016
48. Comparative proteomics of wild type, An+ahpC and An∆ahpC strains of Anabaena sp. PCC7120 demonstrates AhpC mediated augmentation of photosynthesis, N2-fixation and modulation of regulatory network of antioxidative proteins
- Author
-
Shivam Yadav, Snigdha Rai, Alok Kumar Shrivastava, Yogesh Mishra, Ruchi Rai, Shilpi Singh, Sarita Pandey, Lal Chand Rai, and Prashant Kumar Singh
- Subjects
0301 basic medicine ,Proteomics ,Anabaena ,Thioredoxin reductase ,030106 microbiology ,Biophysics ,Wild type ,Nitrogenase ,Cellular homeostasis ,Peroxiredoxins ,Biology ,biology.organism_classification ,Biochemistry ,03 medical and health sciences ,030104 developmental biology ,Stress, Physiological ,Nitrogen Fixation ,Proteome ,Thioredoxin ,Photosynthesis ,Peroxiredoxin ,Oxidoreductases - Abstract
Alkylhydroperoxide reductase (AhpC), a 1-Cys peroxiredoxin is well known for maintaining the cellular homeostasis. Present study employs proteome approach to analyze and compare alterations in proteome of Anabaena PCC7120 in overexpressing (An + ahpC), deletion (An ∆ ahpC) and its wild type. 2-DE based analysis revealed that the major portion of identified protein belongs to energy metabolism, protein folding, modification and stress related proteins and carbohydrate metabolism. The two major traits discernible from An + ahpC were (i) augmentation of photosynthesis and nitrogen fixation (ii) modulation of regulatory network of antioxidative proteins. Increased accumulation of proteins of light reaction, dark reaction, pentose phosphate pathway and electron transfer agent FDX for nitrogenase in An + ahpC and their simultaneous downregulation in AnΔahpC demonstrates its role in augmenting photosynthesis and nitrogen fixation. Proteomic data was nicely corroborated with physiological, biochemical parameters displaying upregulation of nitrogenase (1.6 fold) PSI (1.08) and PSII (2.137) in An + ahpC. Furthermore, in silico analysis not only attested association of AhpC with peroxiredoxins but also with other players of antioxidative defense system viz. thioredoxin and thioredoxin reductase. Above mentioned findings are in agreement with 33–40% and 40–60% better growth performance of An + ahpC over wild type and An ∆ ahpC respectively under abiotic stresses, suggesting its role in maintenance of metabolic machinery under stress. Significance Present work explores key role of AhpC in mitigating stress in Anabaena PCC7120 through combined proteomic, biochemical and in silico investigations. This study is the first attempt to analyze and compare alterations in proteome of Anabaena PCC7120 following addition (overexpressing strain An + ahpC) and deletion (mutant An ∆ ahpC) of AhpC against its wild type. The effort resulted in two major traits in An + ahpC as (i) augmentation of photosynthesis and nitrogen fixation (ii) modulation of regulatory network of antioxidative proteins.
- Published
- 2016
49. Maternal profile of children with severe acute malnutrition
- Author
-
Ruchi, Rai and D K, Singh
- Subjects
Adult ,Young Adult ,Thinness ,Malnutrition ,Humans ,India ,Mothers ,Female ,Child ,Child Nutrition Disorders - Published
- 2015
50. Tapeworm Diseases
- Author
-
Ruchi Rai
- Published
- 2015
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