96 results on '"P M Kooiman"'
Search Results
2. Ancient Pottery, Cuisine, and Society at the Northern Great Lakes by Susan M. Kooiman (review)
- Author
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Styles, Bonnie W.
- Published
- 2022
3. Testing and evaluation of lower limb prosthesis prototypes in people with a transfemoral amputation: a scoping review on research protocols
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Vera G. M. Kooiman, Eline S. van Staveren, Ruud A. Leijendekkers, Jaap H. Buurke, Nico Verdonschot, Erik C. Prinsen, and Vivian Weerdesteyn
- Subjects
Prosthetics ,Development ,Prototype ,Testing ,Protocol ,Transfemoral ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Abstract Background When developing new lower limb prostheses, prototypes are tested to obtain insights into the performance. However, large variations between research protocols may complicate establishing the potential added value of newly developed prototypes over other prostheses. Objective This review aims at identifying participant characteristics, research protocols, reference values, aims, and corresponding outcome measures used during prosthesis prototype testing on people with a transfemoral amputation. Methods A systematic search was done on PubMed and Scopus from 2000 to December 2020. Articles were included if testing was done on adults with transfemoral or knee disarticulation amputation; testing involved walking with a non-commercially available prototype leg prosthesis consisting of at least a knee component; and included evaluations of the participants’ functioning with the prosthesis prototype. Results From the initial search of 2027 articles, 48 articles were included in this review. 20 studies were single-subject studies and 4 studies included a cohort of 10 or more persons with a transfemoral amputation. Only 5 articles reported all the pre-defined participant characteristics that were deemed relevant. The familiarization time with the prosthesis prototype prior to testing ranged from 5 to 10 min to 3 months; in 25% of the articles did not mention the extent of the familiarization period. Mobility was most often mentioned as the development or testing aim. A total of 270 outcome measures were identified, kinetic/kinematic gait parameters were most often reported. The majority of outcome measures corresponded to the mobility aim. For 48% of the stated development aims and 4% of the testing aims, no corresponding outcome measure could be assigned. Results indicated large inconsistencies in research protocols and outcome measures used to validate pre-determined aims. Conclusions The large variation in prosthesis prototype testing and reporting calls for the development of a core set of reported participant characteristics, testing protocols, and specific and well-founded outcome measures, tailored to the various aims and development phases. The use of such a core set can give greater insights into progress of developments and determine which developments have additional benefits over the state-of-the-art. This review may contribute as initial input towards the development of such a core set.
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- 2023
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4. Congruency of multimodal data-driven personalization with shared decision-making for StayFine: individualized app-based relapse prevention for anxiety and depression in young people
- Author
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Bas E. A. M. Kooiman, Suzanne J. Robberegt, Casper J. Albers, Claudi L. H. Bockting, Yvonne A. J. Stikkelbroek, and Maaike H. Nauta
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personalization ,relapse prevention ,network analysis ,expert by experience ,depression and mood disorders ,anxiety disorders ,Psychiatry ,RC435-571 - Abstract
Tailoring interventions to the individual has been hypothesized to improve treatment efficacy. Personalization of target-specific underlying mechanisms might improve treatment effects as well as adherence. Data-driven personalization of treatment, however, is still in its infancy, especially concerning the integration of multiple sources of data-driven advice with shared decision-making. This study describes an innovative type of data-driven personalization in the context of StayFine, a guided app-based relapse prevention intervention for 13- to 21-year-olds in remission of anxiety or depressive disorders (n = 74). Participants receive six modules, of which three are chosen from five optional modules. Optional modules are Enhancing Positive Affect, Behavioral Activation, Exposure, Sleep, and Wellness. All participants receive Psycho-Education, Cognitive Restructuring, and a Relapse Prevention Plan. The personalization approach is based on four sources: (1) prior diagnoses (diagnostic interview), (2) transdiagnostic psychological factors (online self-report questionnaires), (3) individual symptom networks (ecological momentary assessment, based on a two-week diary with six time points per day), and subsequently, (4) patient preference based on shared decision-making with a trained expert by experience. This study details and evaluates this innovative type of personalization approach, comparing the congruency of advised modules between the data-driven sources (1–3) with one another and with the chosen modules during the shared decision-making process (4). The results show that sources of data-driven personalization provide complementary advice rather than a confirmatory one. The indications of the modules Exposure and Behavioral Activation were mostly based on the diagnostic interview, Sleep on the questionnaires, and Enhancing Positive Affect on the network model. Shared decision-making showed a preference for modules improving positive concepts rather than combating negative ones, as an addition to the data-driven advice. Future studies need to test whether treatment outcomes and dropout rates are improved through personalization.
- Published
- 2023
- Full Text
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5. Musculoskeletal model of osseointegrated transfemoral amputees in OpenSim.
- Author
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Vishal Raveendranathan, Vera G M Kooiman, and Raffaella Carloni
- Subjects
Medicine ,Science - Abstract
This study presents a generic OpenSim musculoskeletal model of people with an osseointegrated unilateral transfemoral amputation wearing a generic prosthesis. The model, which consists of seventy-six musculotendon units and two ideal actuators at the knee and ankle joints of the prosthesis, is tested by designing an optimal control strategy that guarantees the tracking of experimental amputee data during level-ground walking while finding the actuators' torques and minimizing the muscle forces. The model can be made subject-specific and, as such, is able to reproduce the kinematics and dynamics of both healthy and amputee subjects. The model provides a tool to analyze the biomechanics of level-ground walking and to understand the contribution of the muscles and of the prosthesis' actuators. The proposed OpenSim musculoskeletal model is released as support material to this study.
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- 2023
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6. An implantable loop recorder or smartphone based single-lead electrocardiogram to detect arrhythmia in adults with congenital heart disease?
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Maarten A. Koole, Dirkjan Kauw, Kirsten M. Kooiman, Joris R. de Groot, Danielle Robbers-Visser, Igor I. Tulevski, Barbara J. Mulder, Berto J. Bouma, and Mark J. Schuuring
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arrhythmias ,congenital heart disease ,electrocardiography ,telemedicine ,implantable loop recorder ,cardiology ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
BackgroundThe European Society of Cardiology (ESC) guidelines for the management of adult congenital heart disease (ACHD) recommend screening in patients at risk for arrhythmic events. However, the optimal mode of detection is unknown.MethodsBaseline and follow-up data of symptomatic ACHD patients who received an implantable loop recorder (ILR) or who participated in a smartphone based single-lead electrocardiogram study were collected. The primary endpoint was time to first detected arrhythmia.ResultsIn total 116 ACHD patients (mean age 42 years, 44% male) were studied. The ILR group (n = 23) differed from the smartphone based single-lead electrocardiogram group (n = 93) in having a greater part of males and had more severe CHD and (near) syncope as qualifying diagnosis. In the smartphone based single-lead electrocardiogram group history of arrhythmia and palpitations were more frequent (all p < 0.05). Monitoring was performed for 40 and 79 patient-years for the ILR- and smartphone based single-lead electrocardiogram group, respectively. Arrhythmias occurred in 33 patients with an equal median time for both groups to first arrhythmia of 3 months (HR of 0.7, p = 0.81). Furthermore, atrial fibrillation occurred most often (n = 16) and common therapy changes included medication changes (n = 7) and implantation of pacemaker or Implantable Cardioverter Defibrillator (ICD) (N = 4). Symptoms or mode of detection were not a determinant of the first event.ConclusionNon-invasive smartphone based single-lead electrocardiogram monitoring could be an acceptable alternative for ILR implantation in detecting arrhythmia in symptomatic ACHD patients in respect to diagnostic yield, safety and management decisions, especially in those without syncope.
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- 2023
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7. Personalised app-based relapse prevention of depressive and anxiety disorders in remitted adolescents and young adults: a protocol of the StayFine RCT
- Author
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Claudi Bockting, Suzanne J Robberegt, Bas E A M Kooiman, Casper J Albers, Maaike H Nauta, and Yvonne Stikkelbroek
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Medicine - Abstract
Introduction Youth in remission of depression or anxiety have high risks of relapse. Relapse prevention interventions may prevent chronicity. Aim of the study is therefore to (1) examine efficacy of the personalised StayFine app for remitted youth and (2) identify high-risk groups for relapse and resilience.Method and analysis In this Dutch single-blind parallel-group randomised controlled trial, efficacy of app-based monitoring combined with guided app-based personalised StayFine intervention modules is assessed compared with monitoring only. In both conditions, care as usual is allowed. StayFine modules plus monitoring is hypothesised to be superior to monitoring only in preventing relapse over 36 months. Participants (N=254) are 13–21 years and in remission of depression or anxiety for >2 months. Randomisation (1:1) is stratified by previous treatment (no treatment vs treatment) and previous episodes (1, 2 or >3 episodes). Assessments include diagnostic interviews, online questionnaires and monitoring (ecological momentary assessment with optional wearable) after 0, 4, 12, 24 and 36 months. The StayFine modules are guided by certified experts by experience and based on preventive cognitive therapy and ingredients of cognitive behavioural therapy. Personalisation is based on shared decision-making informed by baseline assessments and individual symptom networks. Time to relapse (primary outcome) is assessed by the Kiddie Schedule for Affective Disorders and Schizophrenia-lifetime version diagnostic interview. Intention-to-treat survival analyses will be used to examine the data. Secondary outcomes are symptoms of depression and anxiety, number and duration of relapses, global functioning, and quality of life. Mediators and moderators will be explored. Exploratory endpoints are monitoring and wearable outcomes.Ethics, funding and dissemination The study was approved by METC Utrecht and is funded by the Netherlands Organisation for Health Research and Development (636310007). Results will be submitted to peer-reviewed scientific journals and presented at (inter)national conferences.Trial registration number NCT05551468; NL8237.
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- 2022
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8. Rhythmic neural activity is comodulated with short-term gait modifications during first-time use of a dummy prosthesis: a pilot study
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Vera G. M. Kooiman, Helco G. van Keeken, Natasha M. Maurits, Vivian Weerdesteyn, and Teodoro Solis-Escalante
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Gait ,Prosthesis ,EEG ,Gait modifications ,Mobile brain/body imaging ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Abstract Background After transfemoral amputation, many hours of practice are needed to re-learn walking with a prosthesis. The long adaptation process that consolidates a novel gait pattern seems to depend on cerebellar function for reinforcement of specific gait modifications, but the precise, step-by-step gait modifications (e.g., foot placement) most likely rely on top-down commands from the brainstem and cerebral cortex. The aim of this study was to identify, in able-bodied individuals, the specific modulations of cortical rhythms that accompany short-term gait modifications during first-time use of a dummy prosthesis. Methods Fourteen naïve participants walked on a treadmill without (one block, 4 min) and with a dummy prosthesis (three blocks, 3 × 4 min), while ground reaction forces and 32-channel EEG were recorded. Gait cycle duration, stance phase duration, step width, maximal ground reaction force and, ground reaction force trace over time were measured to identify gait modifications. Independent component analysis of EEG data isolated brain-related activity from distinct anatomical sources. The source-level data were segmented into gait cycles and analyzed in the time–frequency domain to reveal relative enhancement or suppression of intrinsic cortical oscillations. Differences between walking conditions were evaluated with one-way ANOVA and post-hoc testing (α = 0.05). Results Immediate modifications occurred in the gait parameters when participants were introduced to the dummy prosthesis. Except for gait cycle duration, these modifications remained throughout the duration of the experimental session. Power modulations of the theta, mu, beta, and gamma rhythms, of sources presumably from the fronto-central and the parietal cortices, were found across the experimental session. Significant power modulations of the theta, beta, and gamma rhythms within the gait cycle were predominately found around the heel strike of both feet and the swing phase of the right (prosthetic) leg. Conclusions The modulations of cortical activity could be related to whole-body coordination, including the swing phase and placing of the prosthesis, and the bodyweight transfer between legs and arms. Reduced power modulation of the gamma rhythm within the experimental session may indicate initial motor memories being formed. Better understanding of the sensorimotor processes behind gait modifications may inform the development of neurofeedback strategies to assist gait rehabilitation.
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- 2020
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9. Noise caused by involuntary muscle response may inhibit detection of ventricular fibrillation during defibrillation testing
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Sarah W.E. Baalman, MD, Kirsten M. Kooiman, PA, Anne-Floor B.E. Quast, MD, Pieter G. Postema, MD, PhD, Steven Donnelley, MSS, and Reinoud E. Knops, MD, PhD
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Case report ,Defibrillation testing ,Muscle spasm ,Noise ,Subcutaneous implantable cardioverter-defibrillator ,Undersensing ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Published
- 2020
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10. [Untitled]
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Monique Rijnkels, Jan H. Nuijens, P M Kooiman, de Boer Ha, van Dixhoorn M, Frank Pieper, and Gerard Platenburg
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Genetically modified mouse ,Ratón ,Transgene ,Biology ,Molecular biology ,law.invention ,law ,Casein ,Gene expression ,Genetics ,Recombinant DNA ,Cosmid ,Animal Science and Zoology ,Agronomy and Crop Science ,Gene ,Biotechnology - Abstract
The bovine αs1-casein gene, isolated from a cosmid library, was introduced into the murine germline. Transgene expression occurred in all transgenic mice, and was confined to the lactating mammary gland. Half of the mouse lines (five out of ten) expressed at relatively high expression levels (>1 mg ml−1). The highest levels of expression were obtained with a transgene containing 14.2 kb of 5′ flanking sequence, in two cases expression levels comparable to (10 mg ml−1) or well above (20 mg ml−1) αs1-casein levels in bovine milk were obtained. Transcription initiation occurred at the same site in the bovine αs1-casein gene in transgenic mouse as in the cow. A marked induction of expression occurred at parturition rather than at mid-pregnancy, and thus resembled the bovine rather than the murine developmental expression pattern. Bovine αs1-casein specific immunoblotting and RIA were developed for characterization and quantificatio n of the recombinant protein. Using these assays, the properties of the recombinant protein could not be distinguished from those of the natural bovine protein. In spite of the high-level tissue-specific and correctly regulated developmental expression of the transgene, expression levels were integration-site dependent. This may indicate that not all cis-acting regulatory elements involved in bovine αs1-casein expression were included in the transgene
- Published
- 1997
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11. Expression analysis of the individual bovine β-,αs2- and κ-casein genes in transgenic mice
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P M Kooiman, F R Pieper, Monique Rijnkels, Paul J.A. Krimpenfort, and H. A. De Boer
- Subjects
Genetically modified mouse ,Casein ,Transgene ,Clone (cell biology) ,Cosmid ,RNA ,Cell Biology ,Transfection ,Biology ,Molecular Biology ,Biochemistry ,Gene ,Molecular biology - Abstract
To identify cis-acting regulatory elements involved in the regulation of expression of the casein genes, the bovine beta-, alpha s2- and kappa-casein genes were isolated from cosmid libraries and introduced into the murine germline. Bovine casein expression was analysed at the RNA and protein level. The bovine beta-casein gene, including 16 kb of 5′- and 8 kb of 3′-flanking region, appeared to be expressed in all 12 transgenic mouse lines analysed. In 50% of these lines expression levels in milk exceeded 1 mg/ml. Three lines displayed expression levels comparable with or well above (20 mg/ml) the beta-casein levels in bovine milk. Transgene expression was restricted to the mammary gland. Strong induction of expression occurred at parturition and thus resembled the bovine rather than the murine pattern. In spite of this high-level tissue-specific and developmentally regulated expression, beta-casein expression levels were integration-site-dependent, suggesting that not all elements involved in regulation of expression were included in this beta-casein clone. Neither the bovine alpha s2- nor the kappa-casein gene, including 8 kb and 5 kb of 5′- and 1.5 kb and 19 kb of 3′-flanking sequences respectively, were properly expressed in transgenic mice. However, they were transcribed in stably transfected mouse mammary epithelial cells. This indicates that regulatory elements required for high-level, mammary gland-specific expression are not present in the alpha s2- and kappa-casein clones used in this study and are probably located elsewhere in the casein gene locus.
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- 1995
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12. Efficient generation of functional transgenes by homologous recombination in murine zygotes
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Arjan C.J. Pronk, Rein Strijker, Frank Pieper, Jan H. Nuyens, Herman A. de Boer, De Wit Ineke, P M Kooiman, and Paul J.A. Krimpenfort
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Zygote ,Transgene ,Blotting, Western ,Molecular Sequence Data ,DNA, Recombinant ,Radioimmunoassay ,Gene Expression ,Mice, Transgenic ,Biology ,Polymerase Chain Reaction ,law.invention ,Mice ,chemistry.chemical_compound ,law ,Gene expression ,Genetics ,Animals ,Humans ,Gene ,Serum Albumin ,Recombination, Genetic ,Base Sequence ,DNA ,Blotting, Northern ,Molecular biology ,body regions ,Blot ,Blotting, Southern ,genomic DNA ,Genetic Techniques ,chemistry ,embryonic structures ,Recombinant DNA ,Homologous recombination - Abstract
To assess the feasibility of generating functional transgenes directly via homologous recombination between microinjected DNA fragments, three overlapping genomic DNA fragments, together constituting the human serum albumin (hSA) gene, were coinjected into murine zygotes. The resulting transgenic mice were analyzed for structure and expression of the transgene. All transgenic mice carried recombined hSA DNA fragments and 74% contained a reconstituted hSA gene. HSA expression could be detected in liver and serum in most (72%) of these animals. Only correctly sized hSA transcripts were observed. Transgenic hSA could not be distinguished from the human serum-derived protein by radioimmunoassay or Western blotting. The high frequency and accuracy of homologous recombination in murine zygotes reported here allows the efficient generation of relatively large transgenes.
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- 1992
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13. High-level expression of bovine alpha s1-casein in milk of transgenic mice
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M, Rijnkels, P M, Kooiman, G J, Platenburg, M, van Dixhoorn, J H, Nuijens, H A, de Boer, and F R, Pieper
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Transcription, Genetic ,Blotting, Western ,Immunoblotting ,Radioimmunoassay ,Caseins ,Gene Expression ,Mice, Transgenic ,Blotting, Northern ,Cosmids ,Blotting, Southern ,Mice ,Mammary Glands, Animal ,Milk ,Pregnancy ,Animals ,Cattle ,Female ,Transgenes - Abstract
The bovine alpha s1-casein gene, isolated from a cosmid library, was introduced into the murine germline. Transgene expression occurred in all transgenic mice, and was confined to the lactating mammary gland. Half of the mouse lines (five out of ten) expressed at relatively high expression levels (1 mg ml-1). The highest levels of expression were obtained with a transgene containing 14.2 kb of 5' flanking sequence, in two cases expression levels comparable to (10 mg ml-1) or well above (20 mg ml-1) alpha s1-casein levels in bovine milk were obtained. Transcription initiation occurred at the same site in the bovine alpha s1-casein gene in transgenic mouse as in the cow. A marked induction of expression occurred at parturition rather than at mid-pregnancy, and thus resembled the bovine rather than the murine developmental expression pattern. Bovine alpha s1-casein specific immunoblotting and RIA were developed for characterization and quantification of the recombinant protein. Using these assays, the properties of the recombinant protein could not be distinguished from those of the natural bovine protein. In spite of the high-level tissue-specific and correctly regulated developmental expression of the transgene, expression levels were integration-site dependent. This may indicate that not all cis-acting regulatory elements involved in bovine alpha s1-casein expression were included in the transgene.
- Published
- 1998
14. Organization of the bovine casein gene locus
- Author
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Frank Pieper, Monique Rijnkels, P M Kooiman, and H. A. De Boer
- Subjects
Genetics ,Cell culture ,Bovine casein ,Animals ,Caseins ,Chromosome Mapping ,Cattle ,Biology ,Human genetics ,Cell Line ,Electrophoresis, Gel, Pulsed-Field - Published
- 1997
15. Glycosylated and unglycosylated human lactoferrins both bind iron and show identical affinities towards human lysozyme and bacterial lipopolysaccharide, but differ in their susceptibilities towards tryptic proteolysis
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H. A. Van Veen, H. A. De Boer, Johannes Henricus Nuijens, Frank Pieper, P. H. C. Van Berkel, P M Kooiman, and Marlieke E.J Geerts
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Lipopolysaccharides ,Glycosylation ,Proteolysis ,Iron ,Molecular Sequence Data ,Anti-Inflammatory Agents ,Radioimmunoassay ,Biology ,Kidney ,Biochemistry ,law.invention ,Cell Line ,chemistry.chemical_compound ,law ,medicine ,Humans ,Trypsin ,Amino Acid Sequence ,Molecular Biology ,medicine.diagnostic_test ,Lactoferrin ,Tunicamycin ,Kidney metabolism ,Cell Biology ,Chromatography, Agarose ,Recombinant Proteins ,carbohydrates (lipids) ,chemistry ,Recombinant DNA ,biology.protein ,Muramidase ,Lysozyme ,medicine.drug ,Protein Binding ,Research Article - Abstract
We studied the role of N-glycosylation of human lactoferrin (hLF) with respect to properties that are relevant to its antibacterial and anti-inflammatory activities. A human kidney-derived 293(S) cell line that constitutively expresses recombinant hLF (rhLF) was produced. The reactivity towards various antibodies of rhLF that had been expressed in the absence or presence of tunicamycin (which blocks N-linked glycosylation) did not differ from that of natural (human milk-derived) hLF. Cation-exchange chromatography and N-terminal protein sequencing showed identical cationic properties and an intact N-terminal sequence for rhLF and natural hLF. SDS/PAGE of rhLF expressed in the presence of tunicamycin revealed a protein with the same M(r) as that of enzymically deglycosylated natural hLF. Both glycosylated and unglycosylated rhLF appeared to be completely saturated with iron. The affinity of natural hLF, glycosylated and non-glycosylated rhLF for both human lysozyme (Kd 4.5 x 10(-8) M) and bacterial lipopolysaccharide did not differ. SDS/PAGE of hLF species subjected to trypsin indicated that unglycosylated rhLF was much more susceptible to degradation. Furthermore, this analysis suggests that N-glycosylation heterogeneity in natural hLF and rhLF resides in the C-lobe. Thus our results provide no argument for differential antibacterial and/or anti-inflammatory activity of natural and (glycosylated) rhLF and suggest that a major function of glycosylation in hLF is to protect it against proteolysis.
- Published
- 1995
16. Expression analysis of the individual bovine beta-, alpha s2- and kappa-casein genes in transgenic mice
- Author
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M, Rijnkels, P M, Kooiman, P J, Krimpenfort, H A, de Boer, and F R, Pieper
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Male ,Caseins ,Gene Expression ,Mice, Transgenic ,Mice ,Mammary Glands, Animal ,Milk ,Gene Expression Regulation ,Genes, Regulator ,Animals ,Lactation ,RNA ,Cattle ,Female ,Research Article - Abstract
To identify cis-acting regulatory elements involved in the regulation of expression of the casein genes, the bovine beta-, alpha s2- and kappa-casein genes were isolated from cosmid libraries and introduced into the murine germline. Bovine casein expression was analysed at the RNA and protein level. The bovine beta-casein gene, including 16 kb of 5'- and 8 kb of 3'-flanking region, appeared to be expressed in all 12 transgenic mouse lines analysed. In 50% of these lines expression levels in milk exceeded 1 mg/ml. Three lines displayed expression levels comparable with or well above (20 mg/ml) the beta-casein levels in bovine milk. Transgene expression was restricted to the mammary gland. Strong induction of expression occurred at parturition and thus resembled the bovine rather than the murine pattern. In spite of this high-level tissue-specific and developmentally regulated expression, beta-casein expression levels were integration-site-dependent, suggesting that not all elements involved in regulation of expression were included in this beta-casein clone. Neither the bovine alpha s2- nor the kappa-casein gene, including 8 kb and 5 kb of 5'- and 1.5 kb and 19 kb of 3'-flanking sequences respectively, were properly expressed in transgenic mice. However, they were transcribed in stably transfected mouse mammary epithelial cells. This indicates that regulatory elements required for high-level, mammary gland-specific expression are not present in the alpha s2- and kappa-casein clones used in this study and are probably located elsewhere in the casein gene locus.
- Published
- 1995
17. Expression of human lactoferrin in milk of transgenic mice
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P M Kooiman, Shelley L. Woloshuk, Rein Strijker, Erika P. A. Kootwijk, Herman A. de Boer, Frank Pieper, Jan H. Nuijens, Paul Krimpenfort, and Gerard Platenburg
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Male ,Recombinant Fusion Proteins ,Genetic Vectors ,Molecular Sequence Data ,Mice, Transgenic ,Regulatory Sequences, Nucleic Acid ,Mice ,Mammary Glands, Animal ,Lactation ,Gene expression ,Genetics ,medicine ,Animals ,Humans ,Northern blot ,RNA, Messenger ,Gene ,biology ,Base Sequence ,Lactoferrin ,RNA ,Caseins ,Molecular biology ,medicine.anatomical_structure ,Milk ,Gene Expression Regulation ,Regulatory sequence ,Polyclonal antibodies ,Organ Specificity ,biology.protein ,Animal Science and Zoology ,Cattle ,Female ,Agronomy and Crop Science ,Biotechnology - Abstract
The expression of human lactoferrin (hLF) in the milk of transgenic mice is described. Regulatory sequences derived from the bovine alpha S1-casein gene were fused to the coding sequence of the hLF cDNA and several lines of transgenic mice were generated. Human LF RNA was detected exclusively in the mammary gland of lactating females and only after the onset of lactation. No aberrant RNA products could be detected using northern blotting and primer extension analysis. The hLF concentrations in the milk ranged from less than 0.1 to 36 micrograms ml-1. Human LF thus expressed did not differ from human milk derived LF, with respect to molecular mass and immunoreactivity with monoclonal and polyclonal antibodies.
- Published
- 1994
18. Key interactions with deazariboflavin cofactor for light-driven energy transfer in Xenopus (6–4) photolyase.
- Author
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Morimoto, Ayaka, Hosokawa, Yuhei, Miyamoto, Hiromu, Verma, Rajiv Kumar, Iwai, Shigenori, Sato, Ryuma, and Yamamoto, Junpei
- Subjects
ENERGY transfer ,FLAVIN adenine dinucleotide ,XENOPUS ,AMINO acid residues ,TIME-resolved spectroscopy - Abstract
Photolyases are flavoenzymes responsible for light-driven repair of carcinogenic crosslinks formed in DNA by UV exposure. They possess two non-covalently bound chromophores: flavin adenine dinucleotide (FAD) as a catalytic center and an auxiliary antenna chromophore that harvests photons and transfers solar energy to the catalytic center. Although the energy transfer reaction has been characterized by time-resolved spectroscopy, it is strikingly important to understand how well natural biological systems organize the chromophores for the efficient energy transfer. Here, we comprehensively characterized the binding of 8-hydroxy-7,8-didemethyl-5-deazariboflavin (8-HDF) to Xenopus (6–4) photolyase. In silico simulations indicated that a hydrophobic amino acid residue located at the entrance of the binding site dominates translocation of a loop upon binding of 8-HDF, and a mutation of this residue caused dysfunction of the efficient energy transfer in the DNA repair reaction. Mutational analyses of the protein combined with modification of the chromophore suggested that Coulombic interactions between positively charged residues in the protein and the phenoxide moiety in 8-HDF play a key role in accommodation of 8-HDF in the proper direction. This study provides a clear evidence that Xenopus (6–4) photolyase can utilize 8-HDF as the light-harvesting chromophore. The obtained new insights into binding of the natural antenna molecule will be helpful for the development of artificial light-harvesting chromophores and future characterization of the energy transfer in (6–4) photolyase by spectroscopic studies. [ABSTRACT FROM AUTHOR]
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- 2021
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19. Development and application of a low-cost vaporizer for rapid, quantitative, in situ addition of organic gases and particles to an environmental chamber.
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Finewax, Zachary, Jimenez, Jose L., and Ziemann, Paul J.
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NEBULIZERS & vaporizers ,ATMOSPHERIC aerosols ,CARBONACEOUS aerosols ,ATMOSPHERIC chemistry ,HOMOGENEOUS nucleation ,ENVIRONMENTAL sciences - Abstract
Environmental chamber studies are widely employed to investigate atmospheric chemistry and aerosol formation. However, the large surface area-to-volume ratio of a chamber leads to effects that need to be accounted for in order to apply the results of chamber studies to the ambient atmosphere. These include, but are not limited to, gas-wall partitioning and particle deposition to walls, both of which can impact quantification of reaction products. Here, a low-cost vaporizer was developed to provide a means to rapidly create well-characterized organic vapors and aerosol particles inside the chamber. This in situ approach eliminates the losses to surfaces that can occur when organic gases or particles are created in a device outside the chamber and then transported inside through tubing, thus providing a simple means for achieving quantitative addition. Thermally stable volatile organic compounds can be added to the chamber within ∼1 min, which allows for accurate measurements of gas-wall partitioning timescales and equilibrium using gas chromatography. The vaporizer can also be used to create low-volatility organic aerosol particles with a mean diameter of ∼150 nm and selectable mass concentration as low as 5 µg m
−3 via homogeneous nucleation within a few minutes. Such an aerosol can be used to calibrate or evaluate the performance of instruments such as the scanning mobility particle sizer in laboratory and field studies. Copyright © 2020 American Association for Aerosol Research [ABSTRACT FROM AUTHOR]- Published
- 2020
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20. Effect of the nitrate group on yields and composition of secondary organic aerosol formed from reactions of alkyl nitrates with OH radicals in the presence of NOx.
- Author
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Algrim, Lucas B. and Ziemann, Paul J.
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NITRATES ,NITRATE reductase ,AEROSOLS ,VAPOR pressure ,BRANCHING ratios ,FUNCTIONAL groups ,GROUP products (Mathematics) - Abstract
A systematic study was conducted on the effect of a nitrate functional group on secondary organic aerosol (SOA) products and yields from reactions of C
10 alkyl nitrate isomers with OH radicals in the presence of NOx . The 1- through 5-decyl nitrate isomers were synthesized from their corresponding alcohols, reacted in an environmental chamber, and the precursors and SOA were analyzed using online and offline techniques. SOA products were analogous to those formed from similar reactions of the C10 n-alkane (decane), but with an additional nitrate group. The SOA yield was highest when the nitrate group was on the terminal carbon and decreased monotonically from 0.51 to 0.50, 0.44, 0.28, and 0.15 as it moved toward the center of the molecule, at which point it was similar to that from decane. The explanation for this trend, which is supported by results of calculations performed using a kinetics model, involves a combination of the effects of the nitrate group on product vapor pressures and reaction branching ratios. In general, although the nitrate group lowers the vapor pressures of products relative to the corresponding products of the decane reaction, thus enhancing gas-to-particle partitioning and SOA formation, as it moves toward the center of the molecule it also alters the branching ratios for reaction pathways so as to enhance the formation of more volatile products. The results are compared with those from similar studies on ketone and alcohol isomers to gain a more comprehensive understanding of the effects of functional groups on SOA composition and yields. Copyright © 2020 American Association for Aerosol Research [ABSTRACT FROM AUTHOR]- Published
- 2020
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21. Thermal desorption behavior of hemiacetal, acetal, ether, and ester oligomers.
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Claflin, Megan S. and Ziemann, Paul J.
- Subjects
THERMAL desorption ,OLIGOMERS ,ESTERS ,PARTICLE beams ,ETHERS ,MASS spectrometers - Abstract
Thermal desorption methods are widely used in the aerosol community to obtain information on particle volatility, and are often coupled with mass spectrometry to separate chemical components prior to analysis. One of the challenges of using these methods is that it is not yet clear how different components respond to temperature, in particular whether they desorb intact or decompose by reversible or irreversible reactions prior to desorption. In this study, we analyzed the thermal desorption behavior of four major classes of oligomers: hemiacetals, acetals, ethers, and esters, which are potentially present in secondary organic aerosol (SOA) and are primarily formed through particle-phase accretion reactions. The results show that when all four of these oligomers are desorbed in our thermal desorption particle beam mass spectrometer at ∼160 °C on millisecond timescales (real-time analysis) they reach the ionization region as the intact oligomer. This is also true for acetal, ether, and ester oligomers desorbed at much lower temperatures on timescales of tens of minutes, whereas hemiacetal oligomers decompose reversibly to the original alcohol and aldehyde monomers. A key factor that influences the desorption behavior of oligomers appears to be whether reversible decomposition occurs by unimolecular rearrangement or whether it involves hydrolysis, and thus requires water that may be lost from particles during heating and thus not available for reversible decomposition prior to desorption. The results should aid others in interpreting thermal desorption analyses, and in extracting information about the linkages that bind oligomers and the types of accretion reactions by which they were formed. Copyright © 2019 American Association for Aerosol Research [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
22. Ionization efficiency of evolved gas molecules from aerosol particles in a thermal desorption aerosol mass spectrometer: Laboratory experiments.
- Author
-
Uchida, Kento, Ide, Yu, and Takegawa, Nobuyuki
- Subjects
ELECTRON impact ionization ,AEROSOLS ,THERMAL desorption ,MASS spectrometers ,AMMONIUM chloride ,VAPORIZATION - Abstract
Thermal desorption aerosol mass spectrometers (TDAMSs) with electron ionization are widely used for quantitative analysis of aerosol chemical composition, and the ionization efficiency of evolved gas molecules from aerosol particles is an important parameter for such analysis. We performed laboratory experiments using a custom-made TDAMS to investigate the key factors affecting ionization efficiency. Ammonium chloride (NH
4 Cl) and ammonium iodide (NH4 I) were used as test compounds because their thermal decomposition products are expected to be simple (dominated by ammonia (NH3 ) and hydrogen halide (HX)). The ion signals originating from NH3 and HX were measured by altering the position of the ionizer relative to the vaporization point. The ratio of ion signal from NH3 to that from HX increased with increasing divergence angle of evolved gas plumes, which suggests that the angular distribution of gas molecules could be an important factor affecting the ionization efficiency. Copyright © 2018 American Association for Aerosol Research [ABSTRACT FROM AUTHOR]- Published
- 2019
- Full Text
- View/download PDF
23. An inter-comparison of black-carbon-related instruments in a laboratory study of biomass burning aerosol.
- Author
-
Tasoglou, Antonios, Subramanian, R., and Pandis, Spyros N.
- Subjects
BIOMASS burning ,AEROSOLS ,SOOT ,CROSS-sectional method ,MASS spectrometers - Abstract
Black carbon (BC)-containing particles are the most strongly light absorbing aerosols in the atmosphere. Measurements of BC are challenging because of its semi-empirical definition based on physical properties and not chemical structure, the complex and continuously changing morphology of the corresponding particles, and the effects of other particulate components on its absorption. In this study, we compare six available commercial continuous instruments measuring BC using biomass burning aerosol. The comparison involves a Soot Particle Aerosol Mass Spectrometer (SP-AMS), a Single-Particle Soot Photometer (SP2), an aethalometer, a Multiangle Absorption Photometer (MAAP), and a blue and a green photoacoustic extinctiometer (PAX). An SP-AMS collection efficiency equal to 0.35 was measured for this aerosol system. The corrected SP-AMS BC mass measurements agreed within 6% with the SP2 refractory BC mass values. Two regimes of behavior were identified for the optical instruments corresponding to high and low organic/BC ratio. The mass absorption cross-sections (MAC) measured varied from 26% to two times the instrument default values depending on the instrument and the regime. The presence of high organic aerosol concentration in this system can lead to overestimation of the BC mass by the optical instruments by as much as a factor of 2.7. In general, the discrepancy among the BC measurements increased as the organic carbon content of the BC-containing particles increased. © 2018 American Association for Aerosol Research [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
24. Chemistry of hydroperoxycarbonyls in secondary organic aerosol.
- Author
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Pagonis, Demetrios and Ziemann, Paul J.
- Subjects
ATMOSPHERIC aerosols ,NITRIC oxide ,ORGANIC compounds ,EQUILIBRIUM constant (Thermodynamics) ,PEROXIDES - Abstract
Highly oxidized multifunctional compounds (HOMs) formed through gas-phase reactions are thought to account for a significant fraction of the secondary organic aerosol (SOA) formed in low-nitric oxide (NO) environments. HOMs are known to be peroxide-rich and unstable in SOA, however, and their fate once they partition into particles is not well understood. In the study reported here, we identified particle-phase reactions and decomposition products for an α-alkoxy hydroperoxyaldehyde that served as a convenient model for HOMs, and also quantified rate and equilibrium constants for cyclic peroxyhemiacetal formation and the effects of particle acidity and relative humidity on reaction products and timescales for decomposition of peroxide-containing compounds. Sulfuric acid increased the rate of acetal formation and subsequent peroxide decomposition, but the effect was eliminated when aqueous seed particles were used in humid air, indicating that organic/aqueous phase separation can affect the ability of strong acids to catalyze these and other reactions in SOA. The results will be useful for understanding and predicting the atmospheric fate of organic peroxides and the effects of their particle-phase reactions on SOA composition. Copyright © 2018 American Association for Aerosol Research [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
25. Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii.
- Author
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Franz, Sophie, Ignatz, Elisabeth, Wenzel, Sandra, Zielosko, Hannah, Putu, Eka Putra Gusti Ngurah, Maestre-Reyna, Manuel, Tsai, Ming-Daw, Yamamoto, Junpei, Mittag, Maria, and Essen, Lars-Oliver
- Published
- 2018
- Full Text
- View/download PDF
26. Dietary N‐Glycans from Bovine Lactoferrin and TLR Modulation.
- Author
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Figueroa‐Lozano, Susana, Valk‐Weeber, Rivca L., van Leeuwen, Sander S., Dijkhuizen, Lubbert, and de Vos, Paul
- Published
- 2018
- Full Text
- View/download PDF
27. Effects of the multidrug resistance-1 gene on drug resistance in primary immune thrombocytopenia.
- Author
-
Liu, Wenjie, Li, Huiyuan, Zhang, Donglei, Lv, Mingen, Li, Yang, Hao, Yating, Chen, Yunfei, Liu, Xiaofan, Xue, Feng, Zhang, Lei, and Yang, Renchi
- Subjects
THROMBOCYTOPENIA ,GENE expression ,MULTIDRUG resistance ,LYMPHOCYTES ,MESSENGER RNA ,GENETICS - Abstract
Primary immune thrombocytopenia (ITP) is an autoimmune disorder that is characterized by low platelet count. Glucocorticoids (GCs) resistance is a great challenge in the treatment of ITP. P-glycoprotein (P-gp) is a widely studied protein, which is associated with drug resistance. However, in ITP, the functional activity and immune regulation mechanism of P-gp remain uncertain. In this study, we evaluated the expression and functional activity of P-gp in different lymphocyte subsets, explored the correlation between P-gp function and GCs resistance and investigated the role of P-gp in ITP pathogenesis. Results indicated that the functional activity and mRNA level of P-gp were significantly higher in GCs-nonresponsive patients than in GCs-responsive patients with ITP. However, these differences in P-gp were only significant in CD8
+ T cells. P-gp function was related to disease activity rather than GCs therapy. P-gp was involved in secreting granzyme B and perforin, maintaining autoreactive lymphocytes survival and enhancing autologous platelets lysis in ITP. In conclusion, over-functional P-gp might play an important role in the pathogenesis of ITP and induce GCs resistance in nonresponsive ITP patients. The blockage of P-gp could be a promising therapeutic approach for GCs-resistant patients with ITP. [ABSTRACT FROM AUTHOR]- Published
- 2016
- Full Text
- View/download PDF
28. Multiscale modeling of microstructure–property relations
- Author
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Geers, M. G. D. and Yvonnet, J.
- Published
- 2016
- Full Text
- View/download PDF
29. Atmospheric Nanoparticles.
- Author
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Lead, Jamie R. and Smith, Emma
- Published
- 2009
- Full Text
- View/download PDF
30. Perspectives for feed-efficient animal production.
- Author
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Niemann, H., Kuhla, B., and Flachowsky, G.
- Subjects
ANIMAL breeding research ,DOMESTIC animals ,ANIMAL feeds ,ARTIFICIAL insemination of domestic animals ,EMBRYO transfer ,TRANSPLANTATION of cell nuclei ,SOMATIC cells - Abstract
Modern animal breeding programs are largely based on biotechnological procedures, including AI and embryo transfer technology. Recent breakthroughs in reproductive technologies, such as somatic cell nuclear transfer and in vitro embryo production, and their combination with the emerging molecular genetic tools, will further advance progress and provide new opportunities for livestock breeding. This is urgently needed in light of the global challenges such as the ever-increasing human population, the limited resources of arable land, and the urgent environmental problems associated with farm animal production. Here, we focus on genomic breeding strategies and transgenic approaches for making farm animals more feed efficient. Based on studies in the mouse and rat model, we have identified a panel of genes that are critically involved in the regulation of feed uptake and that could contribute toward future breeding of farm animals with reduced environmental impact. We anticipate that genetically modified animals will play a significant role in shaping the future of feed-efficient and thus sustainable animal production, but will develop more slowly than the biomedical applications because of the complexity of the regulation of feed intake and metabolism. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
31. Effects of molecular structure on the chemistry of aerosol formation from the OH-radical-initiated oxidation of alkanes and alkenes.
- Author
-
Ziemann, P. J.
- Subjects
OXIDATION ,ATMOSPHERIC aerosols ,MOLECULAR structure ,ALKANES ,ALKENES ,RADICALS (Chemistry) ,HYDROXYL group ,ATMOSPHERIC chemistry ,PARTICULATE matter - Abstract
Aerosol particles have significant effects on a number of important atmospheric processes and phenomena including atmospheric chemistry, visibility, cloud formation, precipitation, climate and human health. A large fraction of this particulate matter is secondary organic aerosol (SOA), which is formed by gas-to-particle conversion of volatile organic compounds (VOC) emitted to the atmosphere from biogenic and anthropogenic sources. The physical and chemical processes by which SOA is formed are complex and are not sufficiently well-understood to provide adequate understanding and predictions regarding the role of this material in the atmospheric system. This review describes and illustrates the fundamental components of the SOA formation process using results from systematic experimental and modelling studies of the reactions of two major classes of VOC emissions, alkanes and alkenes, with the dominant atmospheric oxidant, OH radicals, under conditions representative of a polluted atmosphere. In particular, the presentation draws from studies aimed at elucidating the effects of molecular structure including carbon number, chain branching and C=C double bonds on the reaction kinetics, products and mechanisms and their subsequent impact on SOA formation. The simple concepts drawn from the presented results provide a useful framework for understanding the chemistry of SOA formation from more complex reactions and for identifying critical areas for future research. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
32. Kinetics of the heterogeneous conversion of 1,4-hydroxycarbonyls to cyclic hemiacetals and dihydrofurans on organic aerosol particles.
- Author
-
Lim, Yong Bin and Ziemann, Paul J.
- Abstract
There is growing awareness that heterogeneous reactions may be important in the atmospheric formation of secondary organic aerosols (SOA). Here, we report on the investigation of a series of recently identified heterogeneous reactions that convert 1,4-hydroxycarbonyls, a major product of alkane oxidation, to cyclic hemiacetals and then dihydrofurans in the particle-phase. Through these reactions, saturated 1,4-hydroxycarbonyls are converted to more reactive, unsaturated dihydrofurans, which can evaporate and react rapidly with atmospheric oxidants such as OH radicals, NO3radicals, or O3. In order to investigate the conversion process quantitatively, a model was developed based on a proposed mechanism that includes gas-phase and heterogeneous reactions, as well as gas–particle partitioning. This model was used to simulate the time profiles of products formed from OH radical-initiated reactions of C11–C17n-alkanes in the presence of NOx, for comparison with profiles of particle-phase cyclic hemiacetals measured during environmental chamber reactions of the same alkanes using a thermal desorption particle beam mass spectrometer. Results showed that the particle-phase isomerization of 1,4-hydroxycarbonyls to cyclic hemiacetals was fast in dry air, with a reactive uptake coefficient of at least 0.5. The lifetime for the subsequent particle-phase dehydration of cyclic hemiacetals to dihydrofurans was ∼15 min. The addition of water vapor (relative humidity ∼50%) slowed the conversion process, apparently by neutralizing adsorbed HNO3that is thought to catalyze the reactions. Simulations performed with model parameters obtained from the experiments indicate that for typical atmospheric aerosol mass and oxidant concentrations and sufficiently acidic particles, 1,4-hydroxycarbonyls will be almost entirely converted to dihydrofurans in less than a day in both clean and polluted areas, whereas in the presence of neutralized particles the conversion may be minor. The outcome that occurs could have a significant impact on reaction products and SOA formation. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
33. Chemical composition of atmospheric nanoparticles formed from nucleation in Tecamac, Mexico: Evidence for an important role for organic species in nanoparticle growth.
- Author
-
Smith, J. N., Dunn, M. J., VanReken, T. M., Iida, K., Stolzenburg, M. R., McMurry, P. H., and Huey, L. G.
- Published
- 2008
- Full Text
- View/download PDF
34. The uptake of O3 by myristic acid–oleic acid mixed particles: evidence for solid surface layers.
- Author
-
David G. Nash, Michael P. Tolocka, and Tomas Baer
- Published
- 2006
35. Aerosol products, mechanisms, and kinetics of heterogeneous reactions of ozone with oleic acid in pure and mixed particles.
- Author
-
Paul J. Ziemann
- Published
- 2005
36. Mammary expression of new genes to combat mastitis.
- Author
-
Kerr, D.E. and Wellnitz, O.
- Subjects
TRANSGENIC animals ,AGRICULTURE ,MASTITIS ,STAPHYLOCOCCUS aureus ,MILK ,MAMMARY glands - Abstract
Continual advances in the ability to produce transgenic animals make it likely that such animals will become important components of animal agriculture. The full benefit of the technology, and justification of its initial cost outlay, will be dependent on the establishment within these animals of new traits not easily achievable by other means. Potential applications include enhanced nutrient digestibility with reduced fecal losses, significantly altered milk composition with superior nutritional properties, and enhanced disease resistance. Our goal is to enhance mastitis resistance of dairy cows by enabling the cells of the mammary gland to secrete additional antibacterial proteins. Proof of concept has been obtained through experimentation with a transgenic mouse model. Three lines of mice were developed that produce varying levels of lysostaphin in their milk. This protein has potent antistaphylococcal activity and its secretion into milk confers substantial resistance to infection caused by intramammary challenge with Staphylococcus aureus, a major mastitis pathogen. Additional antibacterial proteins are being sought that will complement lysostaphin. A potential benefit of transgenic application of antibacterial proteins is the concomitant sparing in the agricultural use of antibiotics currently used as human therapeutics. Antibacterial proteins, such as lysostaphin, are not typically used as injectable or oral therapeutics because of immune-mediated or digestive destruction of their activity. In contrast, the immune system of transgenic animals will not consider the transgenic protein as being foreign. In addition we are exploring the potential of involution or mastitis responsive promoter elements for use in subsequent transgenic experiments designed to restrict lysostaphin production to these important time points. It is anticipated that genomics will play a role in unveiling candidate genes whose promoter elements will enable desired temporal expression patterns. The transgenic approach to insertion of new genetic material into agriculturally important animals is feasible but requires extensive prior evaluation of the transgene and transgene product in model systems. [ABSTRACT FROM AUTHOR]
- Published
- 2003
- Full Text
- View/download PDF
37. Ambient aerosol sampling using the Aerodyne Aerosol Mass Spectrometer.
- Author
-
Jimenez, Jose L., Jayne, John T., Shi, Quan, Kolb, Charles E., Worsnop, Douglas R., Yourshaw, Ivan, Seinfeld, John H., Flagan, Richard C., Zhang, Xuefeng, Smith, Kenneth A., Morris, James W., and Davidovits, Paul
- Published
- 2003
- Full Text
- View/download PDF
38. Multispecies Comparison of the Casein Gene Loci and Evolution of Casein Gene Family.
- Author
-
Monique Rijnkels
- Published
- 2002
39. Use of somatic cells from goat milk for dynamic studies of gene expression in the mammary gland.
- Author
-
Boutinaud, M., Rulquin, H., Keisler, D. H., Djiane, J., and Jammes, H.
- Subjects
SOMATIC cells ,GOAT milk ,MAMMARY glands - Abstract
Presents information on a study which examined the efficacy of using somatic cells from goat milk for dynamic studies of gene expression in the mammary gland. Materials and methods used in the study; Results and discussion.
- Published
- 2002
- Full Text
- View/download PDF
40. Effect of an evening dose of regular and effervescent formulations of ranitidine or cimetidine on intragastric pH in healthy volunteers.
- Author
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SMOUT, A. J. P. M., JONKMAN, J. H. G., PEETERS, P. A. M., and BRUIN†, H. DE
- Published
- 1995
- Full Text
- View/download PDF
41. Molecular aspects of hepatobiliary transport.
- Author
-
Muller, Michael and Jansen, Peter L.M.
- Subjects
BILE acids ,PHYSIOLOGY - Abstract
Investigates the molecular aspects of hepatobiliary transport. Generation of bile flow; Basolateral transport systems; Canalicular transport systems; Mechanisms of regulation.
- Published
- 1997
- Full Text
- View/download PDF
42. Identification of the synthetic surfactant nonylphenol ethoxylate: A P-glycoprotein substrate in...
- Author
-
Charuk, Jeffrey H. M., Grey, Arthur A., and Reithmeier, Reinhart A. F.
- Subjects
NONYLPHENOL ,ETHOXYLATES ,GLYCOPROTEINS ,XENOBIOTICS - Abstract
Presents information on a study which identified nonylphenol ethoxylate (NPE) as a major urinary multidrug resistant substrate that indicates renal P-glycoprotein may be responsible for eliminating a variety of xenobiotics. Experimental procedures of the study; Purification of urinary NPE; Chemical identification of urinary NPE.
- Published
- 1998
- Full Text
- View/download PDF
43. Roles of FAD and 8-hydroxy-5-deazaflavin chromophores in photoreactivation by Anacystis nidulans DNA photolyase
- Author
-
Sang Tae Kim, Christopher E. Walsh, Aziz Sancar, and Khushbeer Malhotra
- Subjects
Flavin adenine dinucleotide ,integumentary system ,Pyrimidine dimer ,Cell Biology ,Flavin group ,DNA photolyase ,Chromophore ,Photochemistry ,Biochemistry ,Electron transfer ,chemistry.chemical_compound ,chemistry ,Photolyase ,Molecular Biology ,DNA - Abstract
DNA photolyase from the cyanobacterium Anacystis nidulans contains two chromophores, flavin adenine dinucleotide (FADH2) and 8-hydroxy-5-deazaflavin (8-HDF) (Eker, A. P. M., Kooiman, P., Hessels, J. K. C., and Yasui, A. (1990) J. Biol. Chem. 265, 8009-8015). While evidence exists that the flavin chromophore (in FADH2 form) can catalyze photorepair directly and that the 8-HDF chromophore is the major photosensitizer in photoreactivation it was not known whether 8-HDF splits pyrimidine dimer directly or indirectly through energy transfer to FADH2 at the catalytic center. We constructed a plasmid which over-produces the A. nidulans photolyase in Escherichia coli and purified the enzyme from this organism. Apoenzyme was prepared and enzyme containing stoichiometric amounts of either or both chromophores was reconstituted. The substrate binding and catalytic activities of the apoenzyme (apoE), E-FADH2, E-8-HDF, E-FAD(ox)-8-HDF, and E-FADH2-8-HDF were investigated. We found that FAD is required for substrate binding and catalysis and that 8-HDF is not essential for binding DNA, and participates in catalysis only through energy transfer to FADH2. The quantum yields of energy transfer from 8-HDF to FADH2 and of electron transfer from FADH2 to thymine dimer are near unity.
- Published
- 1992
- Full Text
- View/download PDF
44. Roles of FAD and 8-hydroxy-5-deazaflavin chromophores in photoreactivation by Anacystis nidulans DNA photolyase
- Author
-
K, Malhotra, S T, Kim, C, Walsh, and A, Sancar
- Subjects
Base Sequence ,Light ,Riboflavin ,Restriction Mapping ,Coenzymes ,Chromatography, Ion Exchange ,Cyanobacteria ,Recombinant Proteins ,Apoenzymes ,Spectrometry, Fluorescence ,Spectrophotometry ,Escherichia coli ,Flavin-Adenine Dinucleotide ,Mutagenesis, Site-Directed ,Electrophoresis, Polyacrylamide Gel ,Cloning, Molecular ,Codon ,Deoxyribodipyrimidine Photo-Lyase ,Plasmids - Abstract
DNA photolyase from the cyanobacterium Anacystis nidulans contains two chromophores, flavin adenine dinucleotide (FADH2) and 8-hydroxy-5-deazaflavin (8-HDF) (Eker, A. P. M., Kooiman, P., Hessels, J. K. C., and Yasui, A. (1990) J. Biol. Chem. 265, 8009-8015). While evidence exists that the flavin chromophore (in FADH2 form) can catalyze photorepair directly and that the 8-HDF chromophore is the major photosensitizer in photoreactivation it was not known whether 8-HDF splits pyrimidine dimer directly or indirectly through energy transfer to FADH2 at the catalytic center. We constructed a plasmid which over-produces the A. nidulans photolyase in Escherichia coli and purified the enzyme from this organism. Apoenzyme was prepared and enzyme containing stoichiometric amounts of either or both chromophores was reconstituted. The substrate binding and catalytic activities of the apoenzyme (apoE), E-FADH2, E-8-HDF, E-FAD(ox)-8-HDF, and E-FADH2-8-HDF were investigated. We found that FAD is required for substrate binding and catalysis and that 8-HDF is not essential for binding DNA, and participates in catalysis only through energy transfer to FADH2. The quantum yields of energy transfer from 8-HDF to FADH2 and of electron transfer from FADH2 to thymine dimer are near unity.
- Published
- 1992
45. Predictive performance of machine learning models for kidney complications following coronary interventions: a systematic review and meta-analysis
- Author
-
Najdaghi, Soroush, Davani, Delaram Narimani, Shafie, Davood, and Alizadehasl, Azin
- Published
- 2024
- Full Text
- View/download PDF
46. Female fertility preservation for family planning: a position statement of the Italian Society of Fertility and Sterility and Reproductive Medicine (SIFES-MR)
- Author
-
Massarotti, Claudia, Cimadomo, Danilo, Spadoni, Valentina, Conforti, Alessandro, Zacà, Carlotta, Carosso, Andrea Roberto, Vaiarelli, Alberto, Venturella, Roberta, Vitagliano, Amerigo, Busnelli, Andrea, Cozzolino, Mauro, and Borini, Andrea
- Published
- 2024
- Full Text
- View/download PDF
47. Vidarabine as a novel antifungal agent against Candida albicans: insights on mechanism of action
- Author
-
Gavandi, Tanjila C., Basrani, Sargun T., Chougule, Sayali A., Patil, Shivani B., Nille, Omkar S., Kolekar, Govind B., Yankanchi, Shivanand R., Karuppayil, S. Mohan, and Jadhav, Ashwini K.
- Published
- 2024
- Full Text
- View/download PDF
48. Designing a Measurement Feedback System for Personality Disorders: Should Outcome Monitoring be Based on Symptom Severity or Personality Functioning?
- Author
-
van Geffen, Marieke, Eeren, Hester V., Hutsebaut, Joost, and Wilde, Odette Brand-de
- Published
- 2024
- Full Text
- View/download PDF
49. Maternal α-casein deficiency extends the lifespan of offspring and programmes their body composition
- Author
-
Kolb, Andreas F., Mayer, Claus, Zitskaja, Alina, Petrie, Linda, Hasaballah, Khulod, Warren, Claire, Carlisle, Ailsa, Lillico, Simon, and Whitelaw, Bruce
- Published
- 2024
- Full Text
- View/download PDF
50. Successful pregnancies in a patient with Takayasu arteritis and antiphospholipid syndrome, maintained on infliximab corticosteroid-free regimen: case-based review
- Author
-
Jovicic, Zikica, Dragasevic, Sanja, Petkovic, Ana, Plesinac, Snezana, Sokic Milutinovic, Aleksandra, and Stojanovic, Maja
- Published
- 2024
- Full Text
- View/download PDF
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