13,300 results on '"Mulder, H."'
Search Results
2. First release of Apertif imaging survey data
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Adams, Elizabeth A. K., Adebahr, B., de Blok, W. J. G., Denes, H., Hess, K. M., van der Hulst, J. M., Kutkin, A., Lucero, D. M., Morganti, R., Moss, V. A., Oosterloo, T. A., Orru, E., Schulz, R., van Amesfoort, A. S., Berger, A., Boersma, O. M., Bouwhuis, M., Brink, R. van den, van Cappellen, W. A., Connor, L., Coolen, A. H. W. M., Damstra, S., van Diepen, G. N. J., Dijkema, T. J., Ebbendorf, N., Grange, Y. G., de Goei, R., Gunst, A. W., Holties, H. A., Hut, B., Ivashina, M. V., Jozsa, G. I. G., Loose, G. M., van Leeuwen, J., Maan, Y., Mancini, M., Mika, A., Mulder, H., Norden, M. J., Offringa, A. R., Oostrum, L. C., Pastor-Marazuela, I., Pisano, D. J., Ponomareva, A. A., Romein, J. W., Ruiter, M, Schoenmakers, A. P., van der Schuur, D., Sluman, J. J., Smits, R., Stuurwold, K. J. C, Verstappen, J., Vilchez, N. P. E, Vohl, D., Wierenga, K. J., Wijnholds, S. J., Woestenburg, E. E. M., Zanting, A. W., and Ziemke, J.
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Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
(Abridged) Apertif is a phased-array feed system for WSRT, providing forty instantaneous beams over 300 MHz of bandwidth. A dedicated survey program started on 1 July 2019, with the last observations taken on 28 February 2022. We describe the release of data products from the first year of survey operations, through 30 June 2020. We focus on defining quality control metrics for the processed data products. The Apertif imaging pipeline, Apercal, automatically produces non-primary beam corrected continuum images, polarization images and cubes, and uncleaned spectral line and dirty beam cubes for each beam of an Apertif imaging observation. For this release, processed data products are considered on a beam-by-beam basis within an observation. We validate the continuum images by using metrics that identify deviations from Gaussian noise in the residual images. If the continuum image passes validation, we release all processed data products for a given beam. We apply further validation to the polarization and line data products. We release all raw observational data from the first year of survey observations, for a total of 221 observations of 160 independent target fields, covering approximately one thousand square degrees of sky. Images and cubes are released on a per beam basis, and 3374 beams are released. The median noise in the continuum images is 41.4 uJy/bm, with a slightly lower median noise of 36.9 uJy/bm in the Stokes V polarization image. The median angular resolution is 11.6"/sin(Dec). The median noise for all line cubes, with a spectral resolution of 36.6 kHz, is 1.6 mJy/bm, corresponding to a 3-sigma HI column density sensitivity of 1.8 x 10^20 atoms cm^-2 over 20 km/s (for a median angular resolution of 24" x 15"). We also provide primary beam images for each individual Apertif compound beam. The data are made accessible using a Virtual Observatory interface., Comment: Accepted for publication in A&A, updated Figure 1
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- 2022
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3. The Apertif science verification campaign - Characteristics of polarised radio sources
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Adebahr, B., Berger, A., Adams, E. A. K., Hess, K. M., de Blok, W. J. G., Dénes, H., Moss, V. A., Schulz, R., van der Hulst, J. M., Connor, L., Damstra, S., Hut, B., Ivashina, M. V., Loose, G. M., Maan, Y., Mika, A., Mulder, H., Norden, M. J., Oostrum, L. C., Orrú, E., Ruiter, M., Smits, R., van Cappellen, W. A., van Leeuwen, J., Vermaas, N. J., Vohl, D., and Ziemke, J.
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Cosmology and Nongalactic Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
We analyse five early science datasets from the APERture Tile in Focus (Apertif) phased array feed system to verify the polarisation capabilities of Apertif in view of future larger data releases. We aim to characterise the source population of the polarised sky in the L-Band using polarised source information in combination with IR and optical data. We use automatic routines to generate full field-of-view Q- and U-cubes and perform RM-Synthesis, source finding, and cross-matching with published radio, optical, and IR data to generate polarised source catalogues. SED-fitting routines were used to determine photometric redshifts, star-formation rates, and galaxy masses. IR colour information was used to classify sources as AGN or star-forming-dominated and early- or late-type. We surveyed an area of 56deg$^2$ and detected 1357 polarised source components in 1170 sources. The fraction of polarised sources is 10.57% with a median fractional polarisation of 4.70$\pm$0.14%. We confirmed the reliability of the Apertif measurements by comparing them with polarised cross-identified NVSS sources. Average RMs of the individual fields lie within the error of the best Milky Way foreground measurements. All of our polarised sources were found to be dominated by AGN activity in the radio regime with most of them being radio-loud (79%) and of the FRII class (87%). The host galaxies of our polarised source sample are dominated by intermediate disc and star-forming disc galaxies. The contribution of star formation to the radio emission is on the order of a few percent for $\approx$10% of the polarised sources while for $\approx$90% it is completely dominated by the AGN. We do not see any change in fractional polarisation for different star-formation rates of the AGN host galaxies., Comment: 24 pages, 21 figures
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- 2022
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4. A fast radio burst with sub-millisecond quasi-periodic structure
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Pastor-Marazuela, Inés, van Leeuwen, Joeri, Bilous, Anna, Connor, Liam, Maan, Yogesh, Oostrum, Leon, Petroff, Emily, Straal, Samayra, Vohl, Dany, Adams, E. A. K., Adebahr, B., Attema, Jisk, Boersma, Oliver M., Brink, R. van den, van Cappellen, W. A., Coolen, A. H. W. M., Damstra, S., Dénes, H., Hess, K. M., van der Hulst, J. M., Hut, B., Kutkin, A., Loose, G. Marcel, Lucero, D. M., Mika, Á., Moss, V. A., Mulder, H., Norden, M. J., Oosterloo, T. A., Rajwade, Kaustubh, van der Schuur, D., Sclocco, A., Smits, R., and Ziemke, J.
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
Fast radio bursts (FRBs) are extragalactic radio transients of extraordinary luminosity. Studying the diverse temporal and spectral behaviour recently observed in a number of FRBs may help determine the nature of the entire class. For example, a fast spinning or highly magnetised neutron star might generate the rotation-powered acceleration required to explain the bright emission. Periodic, sub-second components, suggesting such rotation, were recently reported in one FRB, and potentially in two more. Here we report the discovery of FRB 20201020A with Apertif, an FRB showing five components regularly spaced by 0.415 ms. This sub-millisecond structure in FRB 20201020A carries important clues about the progenitor of this FRB specifically, and potentially about that of FRBs in general. We thus contrast its features to the predictions of the main FRB source models. We perform a timing analysis of the FRB 20201020A components to determine the significance of the periodicity. We compare these against the timing properties of the previously reported CHIME FRBs with sub-second quasi-periodic components, and against two Apertif bursts from repeating FRB 20180916B that show complex time-frequency structure. We find the periodicity of FRB 20201020A to be marginally significant at 2.5$\sigma$. Its repeating subcomponents cannot be explained as a pulsar rotation since the required spin rate of over 2 kHz exceeds the limits set by typical neutron star equations of state and observations. The fast periodicity is also in conflict with a compact object merger scenario. These quasi-periodic components could, however, be caused by equidistant emitting regions in the magnetosphere of a magnetar. The sub-millisecond spacing of the components in FRB 20201020A, the smallest observed so far in a one-off FRB, may rule out both neutron-star rotation and binary mergers as the direct source of quasi-periodic FRBs., Comment: 13 pages, 6 figures, 3 tables, supplementary material. Submitted to A&A
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- 2022
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5. Apercal -- The Apertif Calibration Pipeline
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Adebahr, B., Schulz, R., Dijkema, T. J., Moss, V. A., Offringa, A. R., Kutkin, A., van der Hulst, J. M., Frank, B. S., Vilchez, N. P. E., Verstappen, J., Adams, E. K., de Blok, W. J. G., Denes, H., Hess, K. M., Lucero, D., Morganti, R., Oosterloo, T., Pisano, D. -J., Ivashina, M. V., van Cappellen, W. A., Connor, L. D., Coolen, A. H. W. M., Damstra, S., Loose, G. M., Maan, Y., Maccagni, F. M., Mika, A., Mulder, H., Oostrum, L. C., Orru, E., Smits, R., van der Schuur, D., van Leeuwen, J., Vohl, D., Wijnholds, S. J., and Ziemke, J.
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Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
Apertif (APERture Tile In Focus) is one of the Square Kilometre Array (SKA) pathfinder facilities. The Apertif project is an upgrade to the 50-year-old Westerbork Synthesis Radio Telescope (WSRT) using phased-array feed technology. The new receivers create 40 individual beams on the sky, achieving an instantaneous sky coverage of 6.5 square degrees. The primary goal of the Apertif Imaging Survey is to perform a wide survey of 3500 square degrees (AWES) and a medium deep survey of 350 square degrees (AMES) of neutral atomic hydrogen (up to a redshift of 0.26), radio continuum emission and polarisation. Each survey pointing yields 4.6 TB of correlated data. The goal of Apercal is to process this data and fully automatically generate science ready data products for the astronomical community while keeping up with the survey observations. We make use of common astronomical software packages in combination with Python based routines and parallelisation. We use an object oriented module-based approach to ensure easy adaptation of the pipeline. A Jupyter notebook based framework allows user interaction and execution of individual modules as well as a full automatic processing of a complete survey observation. If nothing interrupts processing, we are able to reduce a single pointing survey observation on our five node cluster with 24 physical cores and 256 GB of memory each within 24h keeping up with the speed of the surveys. The quality of the generated images is sufficient for scientific usage for 44 % of the recorded data products with single images reaching dynamic ranges of several thousands. Future improvements will increase this percentage to over 80 %. Our design allowed development of the pipeline in parallel to the commissioning of the Apertif system.
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- 2021
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6. Apertif, Phased Array Feeds for the Westerbork Synthesis Radio Telescope
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van Cappellen, W. A., Oosterloo, T. A., Verheijen, M. A. W., Adams, E. A. K., Adebahr, B., Braun, R., Hess, K. M., Holties, H., van der Hulst, J. M., Hut, B., Kooistra, E., van Leeuwen, J., Loose, G. M., Morganti, R., Moss, V. A., Orrú, E., Ruiter, M., Schoenmakers, A. P., Vermaas, N. J., Wijnholds, S. J., van Amesfoort, A. S., Arts, M. J., Attema, J. J., Bakker, L., Bassa, C. G., Bast, J. E., Benthem, P., Beukema, R., Blaauw, R., de Blok, W. J. G., Bouwhuis, M., Brink, R. H. van den, Connor, L., Coolen, A. H. W. M., Damstra, S., van Diepen, G. N. J., de Goei, R., Dénes, H., Drost, M., Ebbendorf, N., Frank, B. S., Gardenier, D. W., Gerbers, M., Grange, Y. G., Grit, T., Gunst, A. W., Gupta, N., Ivashina, M. V., Józsa, G. I. G., Janssen, G. H., Koster, A., Kruithof, G. H., Kuindersma, S. J., Kutkin, A., Lucero, D. M., Maan, Y., Maccagni, F. M., van der Marel, J., Mika, A., Morawietz, J., Mulder, H., Mulder, E., Norden, M. J., Offringa, A. R., Oostrum, L. C., Overeem, R. E., Paragi, Z., Pepping, H. J., Petroff, E., Pisano, D. J., Polatidis, A. G., Prasad, P., de Reijer, J. P. R., Romein, J. W., Schaap, J., Schoonderbeek, G. W., Schulz, R., van der Schuur, D., Sclocco, A., Sluman, J. J., Smits, R., Stappers, B. W., Straal, S. M., Stuurwold, K. J. C., Verstappen, J., Vohl, D., Wierenga, K. J., Woestenburg, E. E. M., Zanting, A. W., and Ziemke, J.
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Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
We describe the APERture Tile In Focus (Apertif) system, a phased array feed (PAF) upgrade of the Westerbork Synthesis Radio Telescope which has transformed this telescope into a high-sensitivity, wide field-of-view L-band imaging and transient survey instrument. Using novel PAF technology, up to 40 partially overlapping beams can be formed on the sky simultaneously, significantly increasing the survey speed of the telescope. With this upgraded instrument, an imaging survey covering an area of 2300 deg2 is being performed which will deliver both continuum and spectral line data sets, of which the first data has been publicly released. In addition, a time domain transient and pulsar survey covering 15,000 deg2 is in progress. An overview of the Apertif science drivers, hardware and software of the upgraded telescope is presented, along with its key performance characteristics., Comment: 29 pages, 42 figures, accepted for publication by A&A
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- 2021
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7. Dual-frequency single-pulse study of PSR B0950+08
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Bilous, A. V., Griessmeier, J. M., Pennucci, T., Wu, Z., Bondonneau, L., Kondratiev, V., van Leeuwen, J., Maan, Y., Connor, L., Oostrum, L. C., Petroff, E., Verbiest, J. P. W., Vohl, D., McKee, J. W., Shaifullah, G., Theureau, G., Ulyanov, O. M., Cecconi, B., Coolen, A. H., Corbel, S., Damstra, S., Denes, H., Girard, J. N., Hut, B., Ivashina, M., Konovalenko, O. O., Kutkin, A., Loose, G. M., Mulder, H., Ruiter, M., Smits, R., Tokarsky, P. L., Vermaas, N. J., Zakharenko, V. V., Zarka, P., and Ziemke, J.
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Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Solar and Stellar Astrophysics - Abstract
PSR B0950+08 is a bright non-recycled pulsar whose single-pulse fluence variability is reportedly large. Based on observations at two widely separated frequencies, 55 MHz (NenuFAR) and 1.4 GHz (Westerbork Synthesis Radio Telescope), we review the properties of these single pulses. We conclude that they are more similar to ordinary pulses of radio emission than to a special kind of short and bright Giant Pulses, observed from only a handful of pulsars. We argue that temporal variation of properties of interstellar medium along the line of sight to this nearby pulsar, namely the fluctuating size of decorrelation bandwidth of diffractive scintillation makes important contribution to observed single-pulse fluence variability. We further present interesting structures in the low-frequency single-pulse spectra that resemble the "sad trombones" seen in Fast Radio Bursts (FRBs); although for PSR B0950+08 the upward frequency drift is also routinely present. We explain these spectral features with radius-to-frequency mapping, similar to the model developed by Wang et al. (2019) for FRBs. Finally, we speculate that microsecond-scale fluence variability of the general pulsar population remains poorly known, and that its further study may bring important clues about the nature of FRBs., Comment: Accepted by A&A. This version includes a number of minor corrections, including corrected FRB luminosities on the time-luminosity phase-space plot for radio pulses from neutron stars and repeating FRBs
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- 2021
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8. Identification and characterisation of de novo germline structural variants in two commercial pig lines using trio-based whole genome sequencing
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Steensma, Marije J., Lee, Y. L., Bouwman, A. C., Pita Barros, C., Derks, M. F.L., Bink, M. C.A.M., Harlizius, B., Huisman, A. E., Crooijmans, R. P.M.A., Groenen, M. A.M., Mulder, H. A., and Rochus, C. M.
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- 2023
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9. Sub-arcsecond imaging with the International LOFAR Telescope: II. Completion of the LOFAR Long-Baseline Calibrator Survey
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Jackson, Neal, Badole, Shruti, Morgan, John, Chhetri, Rajan, Prusis, Kaspars, Nikolajevs, Atvars, Morabito, Leah, Brentjens, Michiel, Sweijen, Frits, Iacobelli, Marco, Orrù, Emanuela, Sluman, J., Blaauw, R., Mulder, H., van Dijk, P., Mooney, Sean, Deller, Adam, Moldon, Javier, Callingham, J. R., Harwood, Jeremy, Hardcastle, Martin, Heald, George, Drabent, Alexander, McKean, J. P., Asgekar, A., Avruch, I. M., Bentum, M. J., Bonafede, A., Brouw, W. N., Brüggen, M., Butcher, H. R., Ciardi, B., Coolen, A., Corstanje, A., Damstra, S., Duscha, S., Eislöffel, J., Falcke, H., Garrett, M., de Gasperin, F., Griessmeier, J. -M., Gunst, A. W., van Haarlem, M. P., Hoeft, M., van der Horst, A. J., Jütte, E., Koopmans, L. V. E., Krankowski, A., Maat, P., Mann, G., Miley, G. K., Nelles, A., Norden, M., Paas, M., Pandey, V. N., Pandey-Pommier, M., Pizzo, R. F., Reich, W., Rothkaehl, H., Rowlinson, A., Ruiter, M., Shulevski, A., Schwarz, D. J., Smirnov, O., Tagger, M., Vocks, C., van Weeren, R. J., Wijers, R., Wucknitz, O., Zarka, P., Zensus, J. A., and Zucca, P.
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
The Low-Frequency Array (LOFAR) Long-Baseline Calibrator Survey (LBCS) was conducted between 2014 and 2019 in order to obtain a set of suitable calibrators for the LOFAR array. In this paper we present the complete survey, building on the preliminary analysis published in 2016 which covered approximately half the survey area. The final catalogue consists of 30006 observations of 24713 sources in the northern sky, selected for a combination of high low-frequency radio flux density and flat spectral index using existing surveys (WENSS, NVSS, VLSS, and MSSS). Approximately one calibrator per square degree, suitable for calibration of $\geq$ 200 km baselines is identified by the detection of compact flux density, for declinations north of 30 degrees and away from the Galactic plane, with a considerably lower density south of this point due to relative difficulty in selecting flat-spectrum candidate sources in this area of the sky. Use of the VLBA calibrator list, together with statistical arguments by comparison with flux densities from lower-resolution catalogues, allow us to establish a rough flux density scale for the LBCS observations, so that LBCS statistics can be used to estimate compact flux densities on scales between 300 mas and 2 arcsec, for sources observed in the survey. The LBCS can be used to assess the structures of point sources in lower-resolution surveys, with significant reductions in the degree of coherence in these sources on scales between 2 arcsec and 300 mas. The LBCS survey sources show a greater incidence of compact flux density in quasars than in radio galaxies, consistent with unified schemes of radio sources. Comparison with samples of sources from interplanetary scintillation (IPS) studies with the Murchison Widefield Array (MWA) shows consistent patterns of detection of compact structure in sources observed both interferometrically with LOFAR and using IPS., Comment: Accepted to a special issue of A&A on sub-arcsecond imaging with LOFAR
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- 2021
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10. A search for radio emission from double-neutron star merger GW190425 using Apertif
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Boersma, Olivér, van Leeuwen, Joeri, Adams, Elizabeth A. K., Adebahr, Björn, Kutkin, Alexander, Oosterloo, Tom, de Blok, W. J. G., Brink, R. van den, Coolen, A. H. W. M., Connor, L., Damstra, S., Dénes, H., Hess, K. M., van der Hulst, J. M., Hut, B., Ivashina, M., Loose, G. M., Lucero, D. M., Maan, Y., Mika, Á., Moss, V. A., Mulder, H., Oostrum, L. C., Ruiter, M., van der Schuur, D., Smits, R., Vermaas, N. J., Vohl, D., and Ziemke, J.
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
Detection of the electromagnetic emission from coalescing binary neutron stars (BNS) is important for understanding the merger and afterglow. We present a search for a radio counterpart to the gravitational-wave source GW190425, a BNS merger, using Apertif on the Westerbork Synthesis Radio Telescope (WSRT). We observe a field of high probability in the associated localisation region for 3 epochs at 68, 90 and 109 days post merger. We identify all sources that exhibit flux variations consistent with the expected afterglow emission of GW190425. We also look for possible transients. These are sources which are only present in one epoch. In addition, we quantify our ability to search for radio afterglows in fourth and future observing runs of the gravitational-wave detector network using Monte Carlo simulations. We found 25 afterglow candidates based on their variability. None of these could be associated with a possible host galaxy at the luminosity distance of GW190425. We also found 55 transient afterglow candidates that were only detected in one epoch. All turned out to be image artefacts. In the fourth observing run, we predict that up to three afterglows will be detectable by Apertif. While we did not find a source related to the afterglow emission of GW190425, the search validates our methods for future searches of radio afterglows., Comment: 11 pages, 7 figures, accepted for publication
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- 2021
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11. Apertif view of the OH Megamaser IRAS 10597+5926: OH 18 cm satellite lines in wide-area HI surveys
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Hess, Kelley M., Roberts, H., Dénes, H., Adebahr, B., Darling, J., Adams, E. A. K., de Blok, W. J. G., Kutkin, A., Lucero, D. M., Morganti, Raffaella, Moss, V. A., Oosterloo, T. A., Schulz, R., van der Hulst, J. M., Coolen, A. H. W. M., Damstra, S., Ivashina, M., Loose, G. Marcel, Maan, Yogesh, Mika, Á., Mulder, H., Norden, M. J., Oostrum, L. C., Ruiter, M., van Leeuwen, Joeri, Vermaas, N. J., Vohl, D., Wijnholds, S. J., and Ziemke, J.
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Astrophysics - Astrophysics of Galaxies - Abstract
We present the serendipitous detection of the two main OH maser lines at 1667 and 1665 MHz associated with IRAS 10597+5926 at z = 0.19612 in the untargeted Apertif Wide-area Extragalactic Survey (AWES), and the subsequent measurement of the OH 1612 MHz satellite line in the same source. With a total OH luminosity of log(L/L_Sun) = 3.90 +/- 0.03, IRAS 10597+5926 is the fourth brightest OH megamaser (OHM) known. We measure a lower limit for the 1667/1612 ratio of R_1612 > 45.9 which is the highest limiting ratio measured for the 1612 MHz OH satellite line to date. OH satellite line measurements provide a potentially valuable constraint by which to compare detailed models of OH maser pumping mechanisms. Optical imaging shows the galaxy is likely a late-stage merger. Based on published infrared and far ultraviolet fluxes, we find that the galaxy is an ultra luminous infrared galaxy (ULIRG) with log(L_TIR/L_Sun) = 12.24, undergoing a star burst with an estimated star formation rate of 179 +/- 40 M_Sun/yr. These host galaxy properties are consistent with the physical conditions responsible for very bright OHM emission. Finally, we provide an update on the predicted number of OH masers that may be found in AWES, and estimate the total number of OH masers that will be detected in each of the individual main and satellite OH 18 cm lines., Comment: 9 pages, 4 figures. Accepted for publication in A&A
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- 2021
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12. Extreme intra-hour variability of the radio source J1402+5347 discovered with Apertif
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Oosterloo, T. A., Vedantham, H. K., Kutkin, A. M., Adams, E. A. K., Adebahr, B., Coolen, A. H. W. M., Damstra, S., de Blok, W. J. G., De'nes, H., Hess, K. M., Hut, B., Loose, G. M., Lucero, D. M., Maan, Y., Morganti, R., Moss, V. A., Mulder, H., Norden, M. J., Offringa, A. R., Oostrum, L. C., Orru`, E., Ruiter, M., Schulz, R., Brink, R. H. van den, van der Hulst, J. M., van Leeuwen, J., Vermaas, N. J., Vohl, D., Wijnholds, S. J., and Ziemke, J.
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
The propagation of radio waves from distant compact radio sources through turbulent interstellar plasma in our Galaxy causes these sources to twinkle, a phenomenon called interstellar scintillation. Such scintillations are a unique probe of the micro-arcsecond structure of radio sources as well as of the sub-AU-scale structure of the Galactic interstellar medium. Weak scintillations (i.e. an intensity modulation of a few percent) on timescales of a few days or longer are commonly seen at centimetre wavelengths and are thought to result from the line-of-sight integrated turbulence in the interstellar plasma of the Milky Way. So far, only three sources were known that show more extreme variations, with modulations at the level of some dozen percent on timescales shorter than an hour. This requires propagation through nearby (d <~10 pc) anomalously dense (n_e ~10^2 cm^-3) plasma clouds. Here we report the discovery with Apertif of a source (J1402+5347) showing extreme (~50%) and rapid variations on a timescale of just 6.5 minutes in the decimetre band (1.4 GHz). The spatial scintillation pattern is highly anisotropic, with a semi-minor axis of about 20,000 km. The canonical theory of refractive scintillation constrains the scattering plasma to be within the Oort cloud. The sightline to J1402+5347, however, passes unusually close to the B3 star Alkaid (eta UMa) at a distance of 32 pc. If the scintillations are associated with Alkaid, then the angular size of J1402+5347 along the minor axis of the scintels must be smaller than ~10 micro arcsec yielding an apparent brightness temperature for an isotropic source of >~ 10^ 14K. }, Comment: Accepted for Astronomy and Astrophysics Letters
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- 2020
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13. LOFAR 144-MHz follow-up observations of GW170817
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Broderick, J. W., Shimwell, T. W., Gourdji, K., Rowlinson, A., Nissanke, S., Hotokezaka, K., Jonker, P. G., Tasse, C., Hardcastle, M. J., Oonk, J. B. R., Fender, R. P., Wijers, R. A. M. J., Shulevski, A., Stewart, A. J., ter Veen, S., Moss, V. A., van der Wiel, M. H. D., Nichols, D. A., Piette, A., Bell, M. E., Carbone, D., Corbel, S., Eislöffel, J., Grießmeier, J. -M., Keane, E. F., Law, C. J., Muñoz-Darias, T., Pietka, M., Serylak, M., van der Horst, A. J., van Leeuwen, J., Wijnands, R., Zarka, P., Anderson, J. M., Bentum, M. J., Blaauw, R., Brouw, W. N., Brüggen, M., Ciardi, B., de Vos, M., Duscha, S., Fallows, R. A., Franzen, T. M. O., Garrett, M. A., Gunst, A. W., Hoeft, M., Hörandel, J. R., Iacobelli, M., Jütte, E., Koopmans, L. V. E., Krankowski, A., Maat, P., Mann, G., Mulder, H., Nelles, A., Paas, H., Pandey-Pommier, M., Pekal, R., Reich, W., Röttgering, H. J. A., Schwarz, D. J., Smirnov, O., Soida, M., Toribio, M. C., van Haarlem, M. P., van Weeren, R. J., Vocks, C., Wucknitz, O., and Zucca, P.
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
We present low-radio-frequency follow-up observations of AT 2017gfo, the electromagnetic counterpart of GW170817, which was the first binary neutron star merger to be detected by Advanced LIGO-Virgo. These data, with a central frequency of 144 MHz, were obtained with LOFAR, the Low-Frequency Array. The maximum elevation of the target is just 13.7 degrees when observed with LOFAR, making our observations particularly challenging to calibrate and significantly limiting the achievable sensitivity. On time-scales of 130-138 and 371-374 days after the merger event, we obtain 3$\sigma$ upper limits for the afterglow component of 6.6 and 19.5 mJy beam$^{-1}$, respectively. Using our best upper limit and previously published, contemporaneous higher-frequency radio data, we place a limit on any potential steepening of the radio spectrum between 610 and 144 MHz: the two-point spectral index $\alpha^{610}_{144} \gtrsim -2.5$. We also show that LOFAR can detect the afterglows of future binary neutron star merger events occurring at more favourable elevations., Comment: 9 pages, 2 figures, accepted for publication in MNRAS
- Published
- 2020
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14. A bright, high rotation-measure FRB that skewers the M33 halo
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Connor, Liam, van Leeuwen, Joeri, Oostrum, L. C., Petroff, E., Maan, Yogesh, Adams, E. A. K., Attema, J. J., Bast, J. E., Boersma, O. M., Dénes, H., Gardenier, D. W., Hargreaves, J. E., Kooistra, E., Pastor-Marazuela, I., Schulz, R., Sclocco, A., Smits, R., Straal, S. M., van der Schuur, D., Vohl, Dany, Adebahr, B., de Blok, W. J. G., van Cappellen, W. A., Coolen, A. H. W. M., Damstra, S., van Diepen, G. N. J., Frank, B. S., Hess, K. M., Hut, B., Loose, G. Marcel, Lucero, D. M., Mika, Á., Moss, V. A., Mulder, H., Oosterloo, T. A., Ruiter, M., Vedantham, H., Vermaas, N. J., Wijnholds, S. J., and Ziemke, J.
- Subjects
Astrophysics - High Energy Astrophysical Phenomena - Abstract
We report the detection of a bright fast radio burst, FRB\,191108, with Apertif on the Westerbork Synthesis Radio Telescope (WSRT). The interferometer allows us to localise the FRB to a narrow $5\arcsec\times7\arcmin$ ellipse by employing both multibeam information within the Apertif phased-array feed (PAF) beam pattern, and across different tied-array beams. The resulting sight line passes close to Local Group galaxy M33, with an impact parameter of only 18\,kpc with respect to the core. It also traverses the much larger circumgalactic medium of M31, the Andromeda Galaxy. We find that the shared plasma of the Local Group galaxies could contribute $\sim$10\% of its dispersion measure of 588\,pc\,cm$^{-3}$. FRB\,191108 has a Faraday rotation measure of +474\,$\pm\,3$\,rad\,m$^{-2}$, which is too large to be explained by either the Milky Way or the intergalactic medium. Based on the more moderate RMs of other extragalactic sources that traverse the halo of M33, we conclude that the dense magnetised plasma resides in the host galaxy. The FRB exhibits frequency structure on two scales, one that is consistent with quenched Galactic scintillation and broader spectral structure with $\Delta\nu\approx40$\,MHz. If the latter is due to scattering in the shared M33/M31 CGM, our results constrain the Local Group plasma environment. We found no accompanying persistent radio sources in the Apertif imaging survey data.
- Published
- 2020
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15. Repeating fast radio bursts with WSRT/Apertif
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Oostrum, L. C., Maan, Y., van Leeuwen, J., Connor, L., Petroff, E., Attema, J. J., Bast, J. E., Gardenier, D. W., Hargreaves, J. E., Kooistra, E., van der Schuur, D., Sclocco, A., Smits, R., Straal, S. M., ter Veen, S., Vohl, D., Adams, E. A. K., Adebahr, B., de Blok, W. J. G., Brink, R. H. van den, van Cappellen, W. A., Coolen, A. H. W. M., Damstra, S., van Diepen, G. N. J., Frank, B. S., Hess, K. M., van der Hulst, J. M., Hut, B., Ivashina, M. V., Loose, G. M., Lucero, D. M., Mika, Á., Morganti, R. H., Moss, V. A., Mulder, H., Norden, M. J., Oosterloo, T. A., Orrú, E., de Reijer, J. P. R., Ruiter, M., Vermaas, N. J., Wijnholds, S. J., and Ziemke, J.
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
Repeating fast radio bursts (FRBs) present excellent opportunities to identify FRB progenitors and host environments, as well as decipher the underlying emission mechanism. Detailed studies of repeating FRBs might also hold clues to the origin of FRBs as a population. We aim to detect the first two repeating FRBs: FRB 121102 (R1) and FRB 180814.J0422+73 (R2), and characterise their repeat statistics. We also want to significantly improve the sky localisation of R2. We use the Westerbork Synthesis Radio Telescope to conduct extensive follow-up of these two repeating FRBs. The new phased-array feed system, Apertif, allows covering the entire sky position uncertainty of R2 with fine spatial resolution in one pointing. We characterise the energy distribution and the clustering of detected R1 bursts. We detected 30 bursts from R1. Our measurements indicate a dispersion measure of 563.5(2) pc cm$^{-3}$, suggesting a significant increase in DM over the past few years. We place an upper limit of 8% on the linear polarisation fraction of the brightest burst. We did not detect any bursts from R2. A single power-law might not fit the R1 burst energy distribution across the full energy range or widely separated detections. Our observations provide improved constraints on the clustering of R1 bursts. Our stringent upper limits on the linear polarisation fraction imply a significant depolarisation, either intrinsic to the emission mechanism or caused by the intervening medium, at 1400 MHz that is not observed at higher frequencies. The non-detection of any bursts from R2 implies either a highly clustered nature of the bursts, a steep spectral index, or a combination of both. Alternatively, R2 has turned off completely, either permanently or for an extended period of time., Comment: 11 pages, 7 figures, submitted to A&A
- Published
- 2019
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16. H. Grotius, E. Rabbie, H. Mulder, Opera theologica, I, Defensio fidei catholicae de satisfactione Christi adversus Faustum Socinum Senensem, Rabbie, E., Mulder, H., ed.
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C.S.M. Rademaker
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History of Low Countries - Benelux Countries ,DH1-925 - Published
- 1992
17. Unique features of β-cell metabolism are lost in type 2 diabetes.
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Muñoz F, Fex M, Moritz T, Mulder H, and Cataldo LR
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- Humans, Animals, Insulin metabolism, Diabetes Mellitus, Type 2 metabolism, Insulin-Secreting Cells metabolism
- Abstract
Pancreatic β cells play an essential role in the control of systemic glucose homeostasis as they sense blood glucose levels and respond by secreting insulin. Upon stimulating glucose uptake in insulin-sensitive tissues post-prandially, this anabolic hormone restores blood glucose levels to pre-prandial levels. Maintaining physiological glucose levels thus relies on proper β-cell function. To fulfill this highly specialized nutrient sensor role, β cells have evolved a unique genetic program that shapes its distinct cellular metabolism. In this review, the unique genetic and metabolic features of β cells will be outlined, including their alterations in type 2 diabetes (T2D). β cells selectively express a set of genes in a cell type-specific manner; for instance, the glucose activating hexokinase IV enzyme or Glucokinase (GCK), whereas other genes are selectively "disallowed", including lactate dehydrogenase A (LDHA) and monocarboxylate transporter 1 (MCT1). This selective gene program equips β cells with a unique metabolic apparatus to ensure that nutrient metabolism is coupled to appropriate insulin secretion, thereby avoiding hyperglycemia, as well as life-threatening hypoglycemia. Unlike most cell types, β cells exhibit specialized bioenergetic features, including supply-driven rather than demand-driven metabolism and a high basal mitochondrial proton leak respiration. The understanding of these unique genetically programmed metabolic features and their alterations that lead to β-cell dysfunction is crucial for a comprehensive understanding of T2D pathophysiology and the development of innovative therapeutic approaches for T2D patients., (© 2024 The Authors. Acta Physiologica published by John Wiley & Sons Ltd on behalf of Scandinavian Physiological Society.)
- Published
- 2024
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18. H. Grotius, E. Rabbie, H. Mulder, Opera theologica, I, Defensio fidei catholicae de satisfactione Christi adversus Faustum Socinum Senensem, Rabbie, E., Mulder, H., ed.
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Rademaker, C.S.M. and Rademaker, C.S.M.
- Published
- 1992
19. Shock location and CME 3D reconstruction of a solar type II radio burst with LOFAR
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Zucca, P., Morosan, D. E., Rouillard, A. P., Fallows, R., Gallagher, P. T., Magdalenic, J., Klein, K-L., Mann, G., Vocks, C., Carley, E. P., Bisi, M. M., Kontar, E. P., Rothkaehl, H., Dabrowski, B., Krankowski, A., Anderson, J., Asgekar, A., Bell, M. E., Bentum, M. J., Best, P., Blaauw, R., Breitling, F., Broderick, J. W., Brouw, W. N., Bruggen, M., Butcher, H. R., Ciardi, B., de Geus, E., Deller, A., Duscha, S., Eisloffel, J., Garrett, M. A., Grießmeier, J. M., Gunst, A. W., Heald, G., Hoeft, M., Horandel, J., Iacobelli, M., Juette, E., Karastergiou, A., van Leeuwen, J., McKay-Bukowski, D., Mulder, H., Munk, H., Nelles, A., Orru, E., Paas, H., Pandey, V. N., Pekal, R., Pizzo, R., Polatidis, A. G., Reich, W., Rowlinson, A., Schwarz, D. J., Shulevski, A., Sluman, J., Smirnov, O., Sobey, C., Soida, M., Thoudam, S., Toribio, M. C., Vermeulen, R., van Weeren, R. J., Wucknitz, O., and Zarka, P.
- Subjects
Astrophysics - Solar and Stellar Astrophysics - Abstract
Type II radio bursts are evidence of shocks in the solar atmosphere and inner heliosphere that emit radio waves ranging from sub-meter to kilometer lengths. These shocks may be associated with CMEs and reach speeds higher than the local magnetosonic speed. Radio imaging of decameter wavelengths (20-90 MHz) is now possible with LOFAR, opening a new radio window in which to study coronal shocks that leave the inner solar corona and enter the interplanetary medium and to understand their association with CMEs. To this end, we study a coronal shock associated with a CME and type II radio burst to determine the locations at which the radio emission is generated, and we investigate the origin of the band-splitting phenomenon., Comment: 7 Figures, 9 Pages
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- 2018
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20. Apercal—The Apertif calibration pipeline
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Adebahr, B., Schulz, R., Dijkema, T.J., Moss, V.A., Offringa, A.R., Kutkin, A., van der Hulst, J.M., Frank, B.S., Vilchez, N.P.E., Verstappen, J., Adams, E.K., de Blok, W.J.G., Denes, H., Hess, K.M., Lucero, D., Morganti, R., Oosterloo, T., Pisano, D.-J., Ivashina, M.V., van Cappellen, W.A., Connor, L.D., Coolen, A.H.W.M., Damstra, S., Loose, G.M., Maan, Y., Maccagni, F.M., Mika, A., Mulder, H., Oostrum, L.C., Orrú, E., Smits, R., van der Schuur, D., van Leeuwen, J., Vohl, D., Wijnholds, S.J., and Ziemke, J.
- Published
- 2022
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21. MicroRNA 29 modulates β-cell mitochondrial metabolism and insulin secretion via underlying miR-29-OXPHOS complex pathways.
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Cowan E, Sun J, Hamilton A, Ruhrmann S, Karagiannopoulos A, Westholm E, Ofori JK, Luan C, Zhang E, Mulder H, and Eliasson L
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- Animals, Rats, Humans, Mice, Insulin metabolism, Male, Oxidative Phosphorylation, Diabetes Mellitus, Type 2 metabolism, Diabetes Mellitus, Type 2 genetics, MicroRNAs metabolism, MicroRNAs genetics, Insulin-Secreting Cells metabolism, Mitochondria metabolism, Insulin Secretion
- Abstract
Aim: MicroRNAs (miRNAs) regulate β-cell function, and β-cell mitochondria and insulin secretion are perturbed in diabetes. We aimed to identify key miRNAs regulating β-cell mitochondrial metabolism and novel β-cell miRNA-mitochondrial pathways., Methods: TargetScan (http://www.targetscan.org/) was used to predict if 16 miRNAs implicated in β-cell function target 27 cis-eGenes implicated in mitochondrial activity. The expression of candidate miRNAs and insulin secretion after 24 and 1 h pre-incubation in 2.8, 11.1- and 16.7-mM glucose was measured in clonal INS-1 832/13 β-cells. MiR-29 silenced INS-1 832/13 cells were assessed for insulin secretion (glucose, pyruvate, and K
+ ), target cis-eGene expression (Ndufv3 and Ndufa10 components of mitochondrial complex I (CI)), OXPHOS (CI-V) protein expression, and mitochondrial OXPHOS respiration/activity. The expression of differentially expressed miR-29 miRNAs was evaluated in Goto-Kakizaki (GK) rat, db/db mouse and type 2 diabetic (T2D) human islets, as well as NMRI mouse islets cultured under glucolipotoxic conditions., Results: MiR-29, miR-15 and miR-124 were predicted to regulate ~20 cis-eGenes, while miR-29 alone was predicted to regulate ≥12 of these in rat and human species. MiR-29 expression and insulin secretion were reduced in INS-1 832/13 cells after 24 h in elevated glucose. MiR-29 knockdown increased all tested insulin secretory responses, Nudfv3, Ndufa10, complex I and II expression, and cellular mitochondrial OXPHOS. MiR-29 expression was reduced in db/db islets but increased in GK rat and T2D human islets., Conclusion: We conclude miR-29 is a key miRNA in regulating β-cell mitochondrial metabolism and insulin secretion via underlying miR-29-OXPHOS complex pathways. Furthermore, we infer reduced miR-29 expression compensatorily enhances insulin secretion under glucotoxicity., (© 2024 The Author(s). Acta Physiologica published by John Wiley & Sons Ltd on behalf of Scandinavian Physiological Society.)- Published
- 2024
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22. Mitochondrial clearance of calcium facilitated by MICU2 controls insulin secretion
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Vishnu, N., Hamilton, A., Bagge, A., Wernersson, A., Cowan, E., Barnard, H., Sancak, Y., Kamer, K.J., Spégel, P., Fex, M., Tengholm, A., Mootha, V.K., Nicholls, D.G., and Mulder, H.
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- 2021
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23. Sox5 regulates beta-cell phenotype and is reduced in type 2 diabetes
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Axelsson, AS, Mahdi, T, Nenonen, HA, Singh, T, Hänzelmann, S, Wendt, A, Bagge, A, Reinbothe, TM, Millstein, J, Yang, X, Zhang, B, Gusmao, EG, Shu, L, Szabat, M, Tang, Y, Wang, J, Salö, S, Eliasson, L, Artner, I, Fex, M, Johnson, JD, Wollheim, CB, Derry, JMJ, Mecham, B, Spégel, P, Mulder, H, Costa, IG, Zhang, E, and Rosengren, AH
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Biochemistry and Cell Biology ,Biological Sciences ,Diabetes ,Obesity ,Genetics ,2.1 Biological and endogenous factors ,Metabolic and endocrine ,Animals ,Calcium ,Calcium Channels ,Chromatin ,Diabetes Mellitus ,Experimental ,Diabetes Mellitus ,Type 2 ,Exocytosis ,Female ,Gene Expression Regulation ,Humans ,Insulin ,Insulin-Secreting Cells ,Islets of Langerhans ,Male ,Mice ,Mice ,Inbred C57BL ,Oligonucleotide Array Sequence Analysis ,Phenotype ,Phlorhizin ,RNA ,Small Interfering ,Rats ,SOXD Transcription Factors ,Valproic Acid - Abstract
Type 2 diabetes (T2D) is characterized by insulin resistance and impaired insulin secretion, but the mechanisms underlying insulin secretion failure are not completely understood. Here, we show that a set of co-expressed genes, which is enriched for genes with islet-selective open chromatin, is associated with T2D. These genes are perturbed in T2D and have a similar expression pattern to that of dedifferentiated islets. We identify Sox5 as a regulator of the module. Sox5 knockdown induces gene expression changes similar to those observed in T2D and diabetic animals and has profound effects on insulin secretion, including reduced depolarization-evoked Ca2+-influx and β-cell exocytosis. SOX5 overexpression reverses the expression perturbations observed in a mouse model of T2D, increases the expression of key β-cell genes and improves glucose-stimulated insulin secretion in human islets from donors with T2D. We suggest that human islets in T2D display changes reminiscent of dedifferentiation and highlight SOX5 as a regulator of β-cell phenotype and function.
- Published
- 2017
24. Lipoprotein (a) Testing in Patients With Atherosclerotic Cardiovascular Disease in 5 Large US Health Systems.
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Shah NP, Mulder H, Lydon E, Chiswell K, Hu X, Lampron Z, Cohen L, Patel MR, Taubes S, Song W, Mulukutla SR, Saeed A, Morin DP, Bradley SM, Hernandez AF, and Pagidipati NJ
- Subjects
- Humans, Male, Female, Retrospective Studies, Middle Aged, Aged, United States epidemiology, Biomarkers blood, Hydroxymethylglutaryl-CoA Reductase Inhibitors therapeutic use, Risk Factors, Lipoprotein(a) blood, Atherosclerosis blood, Atherosclerosis epidemiology, Atherosclerosis diagnosis
- Abstract
Background: Lipoprotein (a) is an independent risk factor for atherosclerotic cardiovascular disease. However, lipoprotein (a) testing remains variable and it is unclear what factors influence testing and if testing changes clinical management., Methods and Results: A retrospective study using electronic medical record data from 5 health systems identified an atherosclerotic cardiovascular disease cohort divided into those with and without a lipoprotein (a) test between 2019 and 2021. Baseline characteristics and lipid-lowering therapy patterns were assessed. Multivariable regression modeling was used to determine factors associated with lipoprotein (a) testing. Among 595 684 patients with atherosclerotic cardiovascular disease, only 2587 (0.4%) were tested for lipoprotein (a). Those who were older or Black individuals were less likely to have lipoprotein (a) testing, while those with familial hypercholesterolemia, ischemic stroke/transient ischemic attack, peripheral artery disease, prior lipid-lowering therapy, or low-density lipoprotein cholesterol ≥130 mg/dL were more likely to be tested. Those with a lipoprotein (a) test, regardless of the lipoprotein (a) value, were more frequently initiated on any statin therapy (30.3% versus 10.6%, P < 0.001), ezetimibe (7.65% versus 0.8%, P < 0.001), or proprotein convertase substilisin/kexin type 9 inhibitor (6.7% versus 0.3%, P < 0.001) compared with those without a test. Those with an elevated lipoprotein (a) level more frequently initiated ezetimibe (11.5% versus 5.9%, P < 0.001) or proprotein convertase substilisin/kexin type 9 inhibitor (10.9% versus 4.8%, P < 0.001)., Conclusions: Lipoprotein (a) testing in patients with atherosclerotic cardiovascular disease is infrequent, with evidence of disparities among older or Black individuals. Testing for lipoprotein (a), regardless of level, is associated with greater initiation of any lipid-lowering therapy, while elevated lipoprotein (a) is associated with greater initiation of nonstatin lipid-lowering therapy. There is a critical need for multidisciplinary and inclusive approaches to raise awareness for lipoprotein (a) testing, and its implications on management.
- Published
- 2024
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25. Durable Mixed Chimerism May Permit Subsequent Immunosuppression-Free Intestinal Transplantation - a Proof-of-Principle Study.
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Patwardhan S, Gunes ME, Manell E, Hong J, Jordache P, Chauhan I, Almesallmy A, Mulder H, Ekanayake-Alper D, Hajosi D, Ko HM, Sanmugarajah K, Cetrulo CL, Nowak G, Sachs DH, Sykes M, and Weiner J
- Abstract
Intestinal transplantation (ITx) is the definitive treatment for intestinal failure but has the highest rejection rate among solid organ transplants, requiring high doses of immunosuppression with high rates of infection, graft-versus-host disease, and malignancy. Transplant tolerance would overcome the need for long-term immunosuppression. Using non-myeloablative conditioning, our laboratory has developed a novel swine model of hematopoietic stem cell transplantation (HSCT) that produces durable mixed chimerism (MC) and immune tolerance without toxicity. We investigated whether durable MC would promote tolerance of subsequently transplanted donor-matched intestinal allografts without immunosuppression. Using miniature swine with defined MHC, we performed HSCT across an MHC-Class-I haplotype mismatch. Immunosuppression was stopped by day 45. MC was evaluated by flow cytometry, and mixed lymphocyte reaction (MLR) assays were used to evaluate cellular responses. Subsequently, orthotopic ITx was performed without immunosuppression using a donor that was MHC-matched to the HSCT donor. Recipients were observed for four weeks and euthanized for tissue collection and mechanistic assays. After HSCT, the recipients developed durable multilineage MC and apparent deletional tolerance. After ITx, recipients showed no clinical or histological signs of rejection, and chimerism was unchanged. These results demonstrate the potential value of generating durable MC to achieve transplant tolerance., (Copyright © 2024 American Society of Transplantation & American Society of Transplant Surgeons. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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- View/download PDF
26. Real-world exploration of LDL-cholesterol management in patients with atherosclerotic cardiovascular disease.
- Author
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Shah NP, Mulder H, Lydon E, Chiswell K, Hu X, Lampron Z, Cohen L, Patel MR, Taubes S, Song W, Mulukutla SR, Saeed A, Morin DP, Bradley SM, Hernandez AF, and Pagidipati NJ
- Abstract
Background: Although guidelines recommend low-density lipoprotein cholesterol (LDL-C) to be < 70 mg/dL in patients with atherosclerotic cardiovascular disease (ASCVD), the rate of achieving this goal remains suboptimal. We sought to understand real world contemporary practice patterns of LDL-C management in patients with ASCVD, and whether LDL-C testing influenced management across US health systems., Methods: A retrospective cohort study utilizing electronic medical record data from five health systems participating in the CardioHealth Alliance was performed on patients with an LDL-C measurement in 2021 and prior ASCVD. Multivariable regression modeling was used to determine the relationship of clinical factors with achievement of guideline directed LDL-C target. Changes in lipid lowering therapy (LLT) after LDL-C testing were also described., Results: Among 216,074 patients with ASCVD, 129,886 (60.1%) had uncontrolled LDL-C (i.e. ≥ 70 mg/dL). Compared with participants with controlled LDL-C (< 70 mg/dL), those with uncontrolled LDL-C were more frequently female (50.9% vs. 35.1%), or Black (13.7% vs. 10.3%), and less commonly had coronary artery disease as the form of vascular disease (73.0% vs. 83.5% %), heart failure (21.3% vs. 29.1% %), diabetes (34.1% vs. 48.2%), atrial fibrillation (19.3% vs. 26.1%), or chronic kidney disease (25.1% vs. 32.2%). In multivariable analyses, the factors most strongly associated with failure to achieve LDL-C control were female sex (RR 1.13 [95% CI 1.12-1.14] P < .001) and Black race (1.15 [1.14-1.17] P < .001). Among the 53,957 (41.5%) of those with uncontrolled LDL-C ≥70 mg/dL not on lipid lowering therapy (LLT) at baseline, only 21% were initiated on any LLT within 6 months of the uncontrolled LDL-C value., Conclusions: Within 5 diverse large health systems in the CardioHealth Alliance, more than half of the patients with ASCVD had uncontrolled LDL-C with significant disparities based on sex and race at baseline. The vast majority were not initiated on any lipid lowering therapy within 6 months of an elevated test result indicating persistent gaps in care that will likely worsen health inequities in outcomes. This highlights the urgent need for implementation efforts to improve equitable care., Competing Interests: Conflict of interest None reported., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2024
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27. Enzyme structure correlates with variant effect predictability.
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van der Flier F, Estell D, Pricelius S, Dankmeyer L, van Stigt Thans S, Mulder H, Otsuka R, Goedegebuur F, Lammerts L, Staphorst D, van Dijk ADJ, de Ridder D, and Redestig H
- Abstract
Protein engineering increasingly relies on machine learning models to computationally pre-screen promising novel candidates. Although machine learning approaches have proven effective, their performance on prospective screening data leaves room for improvement; prediction accuracy can vary greatly from one protein variant to the next. So far, it is unclear what characterizes variants that are associated with large prediction error. In order to establish whether structural characteristics influence predictability, we created a novel high-order combinatorial dataset for an enzyme spanning 3,706 variants, that can be partitioned into subsets of variants with mutations at positions exclusively belonging to a particular structural class. By training four different supervised variant effect prediction (VEP) models on structurally partitioned subsets of our data, we found that predictability strongly depended on all four structural characteristics we tested; buriedness, number of contact residues, proximity to the active site and presence of secondary structure elements. These dependencies were also found in several single mutation enzyme variant datasets, albeit with dataset specific directions. Most importantly, we found that these dependencies were similar for all four models we tested, indicating that there are specific structure and function determinants that are insufficiently accounted for by current machine learning algorithms. Overall, our findings suggest that improvements can be made to VEP models by exploring new inductive biases and by leveraging different data modalities of protein variants, and that stratified dataset design can highlight areas of improvement for machine learning guided protein engineering., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Author(s).)
- Published
- 2024
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28. The future is here: an overview of technology in diabetes.
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Mallik R, Kar P, Mulder H, and Krook A
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- Humans, Diabetes Mellitus therapy
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- 2024
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29. SJPedPanel: A Pan-Cancer Gene Panel for Childhood Malignancies to Enhance Cancer Monitoring and Early Detection.
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Kolekar P, Balagopal V, Dong L, Liu Y, Foy S, Tran Q, Mulder H, Huskey ALW, Plyler E, Liang Z, Ma J, Nakitandwe J, Gu J, Namwanje M, Maciaszek J, Payne-Turner D, Mallampati S, Wang L, Easton J, Klco JM, and Ma X
- Subjects
- Humans, Child, Biomarkers, Tumor genetics, DNA Copy Number Variations, Male, High-Throughput Nucleotide Sequencing methods, Female, Child, Preschool, Genomics methods, Adolescent, Neoplasms genetics, Neoplasms diagnosis, Neoplasms pathology, Early Detection of Cancer methods
- Abstract
Purpose: The purpose of the study was to design a pan-cancer gene panel for childhood malignancies and validate it using clinically characterized patient samples., Experimental Design: In addition to 5,275 coding exons, SJPedPanel also covers 297 introns for fusions/structural variations and 7,590 polymorphic sites for copy-number alterations. Capture uniformity and limit of detection are determined by targeted sequencing of cell lines using dilution experiment. We validate its coverage by in silico analysis of an established real-time clinical genomics (RTCG) cohort of 253 patients. We further validate its performance by targeted resequencing of 113 patient samples from the RTCG cohort. We demonstrate its power in analyzing low tumor burden specimens using morphologic remission and monitoring samples., Results: Among the 485 pathogenic variants reported in RTCG cohort, SJPedPanel covered 86% of variants, including 82% of 90 rearrangements responsible for fusion oncoproteins. In our targeted resequencing cohort, 91% of 389 pathogenic variants are detected. The gene panel enabled us to detect ∼95% of variants at allele fraction (AF) 0.5%, whereas the detection rate is ∼80% at AF 0.2%. The panel detected low-frequency driver alterations from morphologic leukemia remission samples and relapse-enriched alterations from monitoring samples, demonstrating its power for cancer monitoring and early detection., Conclusions: SJPedPanel enables the cost-effective detection of clinically relevant genetic alterations including rearrangements responsible for subtype-defining fusions by targeted sequencing of ∼0.15% of human genome for childhood malignancies. It will enhance the analysis of specimens with low tumor burdens for cancer monitoring and early detection., (©2024 The Authors; Published by the American Association for Cancer Research.)
- Published
- 2024
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30. The gut microbiota and diabetes: clarity on an emerging topic and introduction to a new partnership and journal feature.
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D'Alessio DA, Kahn SE, and Mulder H
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- Humans, Gastrointestinal Microbiome physiology, Diabetes Mellitus microbiology
- Published
- 2024
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31. Contribution of Clinical Trial Event Data by Data Source: A Prespecified Analysis of the ADAPTABLE Randomized Clinical Trial.
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Rymer JA, Mulder H, Wruck LM, Muñoz D, Kripalani S, Effron MB, Gupta K, Handberg E, Jain S, Girotra S, Whittle J, Hess R, Benziger CP, Knowlton KU, Curtis LH, Roe MT, Hammill BG, Rothman RL, Harrington R, Hernandez A, and Jones WS
- Subjects
- Humans, Female, Male, Aged, Middle Aged, Myocardial Infarction, Stroke, Platelet Aggregation Inhibitors therapeutic use, Hospitalization statistics & numerical data, Pragmatic Clinical Trials as Topic, Information Sources, Electronic Health Records, Aspirin therapeutic use
- Abstract
Importance: Pragmatic randomized clinical trials (RCTs) often use multiple data sources to examine clinical events, but the relative contribution of data sources to clinical end-point rates is understudied., Objective: To assess the contribution of data sources (electronic health records [EHRs], public/private insurance claims, and/or participant-reported data) to clinical end points among ADAPTABLE participants who had available data., Design, Setting, and Participants: The ADAPTABLE study was an open-label, pragmatic RCT from April 2016 through June 2019 conducted in research networks within clinical practice. Participants had existing atherosclerotic cardiovascular disease and available data to analyze. The characteristics of patients by combinations of data source availability were compared to examine the contribution of each of the data sources to end-point ascertainment. Data for this prespecified analysis were examined from January 2022 to June 2023., Exposures: Randomized exposure to 81 mg or 325 mg of aspirin daily., Main Outcomes and Measures: Number of events for the primary end point (composite of death, hospitalization for myocardial infarction, and hospitalization for stroke) that were contributed by EHR or claims data and then number of events contributed by each additional data source., Results: Of 15 006 participants randomized with at least 1 other source of data available beyond participant-reported data, there were 8756 (58.3%) with participant-reported and EHR data; 4291 (28.6%) with participant-reported, EHR, and claims data; 1412 (9.4%) with EHR-only data; 262 (1.7%) with participant-reported and claims data; 202 (1.3%) with EHR and claims data; and 83 (0.6%) with claims-only data. Participants with EHR-only data were younger (median age, 63.7 years; IQR, 55.8-71.4) compared with the other groups (range, 65.6-71.9 years). Among participants with both EHR and claims data, with or without participant-reported data (n = 4493), for each outcome, most events (92%-100%) were identified in the EHR or in claims data. For all clinical end points, participant-reported data contributed less than 10% of events not otherwise available from claims or EHR data., Conclusions and Relevance: In this analysis of a pragmatic RCT, claims and EHR data provided the most clinical end-point data when compared with participant-reported events. These findings provide a framework for collecting end points in pragmatic clinical trials. Further work is needed to understand the data source combinations that most effectively provide clinical end-point data in RCTs.
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- 2024
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32. The Chemistry Of Wine G. J. Mulder H. Bence Jones
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- 1857
33. Association of Chronic Obstructive Pulmonary Disease with Morbidity and Mortality in Patients with Peripheral Artery Disease: Insights from the EUCLID Trial
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Galani J, Mulder H, Rockhold FW, Weissler EH, Baumgartner I, Berger JS, Blomster JI, Fowkes FGR, Hiatt WR, Katona BG, Norgren L, Mahaffey KW, Quint JK, Patel MR, and Jones WS
- Subjects
peripheral artery disease ,chronic obstructive pulmonary disease ,major adverse cardiovascular events ,Diseases of the respiratory system ,RC705-779 - Abstract
Jemi Galani,1 Hillary Mulder,2 Frank W Rockhold,2 E Hope Weissler,2,3 Iris Baumgartner,4 Jeffrey S Berger,5 Juuso I Blomster,6 F Gerry R Fowkes,7 William R Hiatt,8,9 Brian G Katona,10 Lars Norgren,11 Kenneth W Mahaffey,12 Jennifer K Quint,13 Manesh R Patel,1,2 W Schuyler Jones1,2 1Department of Medicine, Duke University Medical Center, Durham, NC, USA; 2Duke Clinical Research Institute, Duke University School of Medicine, Durham, NC, USA; 3Department of Surgery, Division of Vascular Surgery, Duke University Health System, Durham, NC, USA; 4Department of Medicine, Swiss Cardiovascular Center, University of Bern, Bern, Switzerland; 5Departments of Medicine and Surgery, New York University School of Medicine, New York, NY, USA; 6University of Turku, Turku, Finland; 7Usher Institute of Population Health Sciences and Informatics, University of Edinburgh, Edinburgh, UK; 8Division of Cardiology, University of Colorado School of Medicine, Aurora, CO, USA; 9CPC Clinical Research, Aurora, CO, USA; 10AstraZeneca, Gaithersburg, MD, USA; 11Faculty of Medicine and Health, Örebro University, Örebro, Sweden; 12Stanford Center for Clinical Research, Stanford University School of Medicine, Stanford, CA, USA; 13Respiratory Epidemiology, Occupational Medicine and Public Health, National Heart and Lung Institute, Imperial College London, London, UKCorrespondence: W Schuyler JonesDuke University Medical Center, Box 3330, Durham, NC, 27710, USATel +1 919-668-8917Fax +1 919-668-7026Email schuyler.jones@duke.eduBackground: Patients with chronic obstructive pulmonary disease (COPD) are at increased risk of developing lower extremity peripheral artery disease (PAD) and suffering PAD-related morbidity and mortality. However, the effect and burden of COPD on patients with PAD is less well defined. This post hoc analysis from EUCLID aimed to analyze the risk of major adverse cardiovascular events (MACE) and major adverse limb events (MALE) in patients with PAD and concomitant COPD compared with those without COPD, and to describe the adverse events specific to patients with COPD.Methods: EUCLID randomized 13,885 patients with symptomatic PAD to monotherapy with either ticagrelor or clopidogrel for the prevention of MACE. In this analysis, MACE, MALE, mortality, and adverse events were compared between groups with and without COPD using unadjusted and adjusted Cox proportional hazards model.Results: Of the 13,883 patients with COPD status available at baseline, 11% (n=1538) had COPD. Patients with COPD had a higher risk of MACE (6.02 vs 4.29 events/100 patient-years; p< 0.001) due to a significantly higher risk of myocardial infarction (MI) (3.55 vs 1.85 events/100 patient-years; p< 0.001) when compared with patients without COPD. These risks persisted after adjustment (MACE: adjusted hazard ratio (aHR) 1.30, 95% confidence interval [CI] 1.11– 1.52; p< 0.001; MI: aHR 1.45, 95% CI 1.18– 1.77; p< 0.001). However, patients with COPD did not have an increased risk of MALE or major bleeding. Patients with COPD were more frequently hospitalized for dyspnea and pneumonia (2.66 vs 0.9 events/100 patient-years; aHR 2.77, 95% CI 2.12– 3.63; p< 0.001) and more frequently discontinued study drug prematurely (19.36 vs 12.54 events/100 patient-years; p< 0.001; aHR 1.34, 95% CI 1.22– 1.47; p< 0.001).Conclusion: In patients with comorbid PAD and COPD, the risks of MACE, respiratory-related adverse events, and premature study drug discontinuation were higher when compared with patients without COPD.Registration: ClinicalTrials.gov: NCT01732822.Keywords: peripheral artery disease, chronic obstructive pulmonary disease, major adverse cardiovascular events
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- 2021
34. The place of Marie Sibylla Merian’s books in eighteenth-century private libraries
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Delft, M. van, Etheridge, K., Mulder, H., Pieters, F., Montoya, A.C., Delft, M. van, Etheridge, K., Mulder, H., Pieters, F., and Montoya, A.C.
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- 2022
35. Kidney and Cardiovascular Effectiveness of SGLT2 Inhibitors vs GLP-1 Receptor Agonists in Type 2 Diabetes.
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Edmonston D, Mulder H, Lydon E, Chiswell K, Lampron Z, Shay C, Marsolo K, Shah RC, Jones WS, Gordon H, Hwang W, Ayoub I, Ford D, Chamberlain A, Rao A, Fonseca V, Chang A, Ahmad F, Hung A, Hunt K, Butler J, Bosworth HB, and Pagidipati N
- Subjects
- Humans, Male, Female, Middle Aged, Aged, Cardiovascular Diseases, Hypoglycemic Agents therapeutic use, Kidney Failure, Chronic, Glucagon-Like Peptide-1 Receptor Agonists, Diabetes Mellitus, Type 2 drug therapy, Diabetes Mellitus, Type 2 complications, Sodium-Glucose Transporter 2 Inhibitors therapeutic use, Glucagon-Like Peptide-1 Receptor agonists, Glomerular Filtration Rate drug effects
- Abstract
Background: Emerging data suggest that glucagon-like peptide-1 receptor agonists (GLP-1 RAs) improve kidney outcomes for people with type 2 diabetes (T2D). Direct comparisons of the kidney and cardiovascular effectiveness of GLP-1 RA with sodium-glucose cotransporter 2 inhibitors (SGLT2i), a first-line therapy for this population, are needed., Objectives: The authors compared kidney and cardiovascular outcomes for new users of SGLT2i and GLP-1 RAs with T2D., Methods: Using propensity score overlap weighting, we analyzed electronic health record data from 20 U.S. health systems contributing to PCORnet between 2015 and 2020. The primary kidney outcome was a composite of sustained 40% estimated glomerular filtration rate (eGFR) decline, incident end-stage kidney disease, or all-cause mortality over 2 years or until censoring. In addition, we examined cardiovascular and safety outcomes., Results: The weighted study cohort included 35,004 SGLT2i and 47,268 GLP-1 RA initiators. Over a median of 1.2 years, the primary outcome did not differ between treatments (HR: 0.91; 95% CI: 0.81-1.02), although SGLT2i were associated with a lower risk of 40% eGFR decline (HR: 0.77; 95% CI: 0.65-0.91). Risks of mortality (HR: 1.08; 95% CI: 0.92-1.27), a composite of stroke, myocardial infarction, or death (HR: 1.03; 95% CI: 0.93-1.14), and heart failure hospitalization (HR: 0.95; 95% CI: 0.80-1.13) did not differ. Genital mycotic infections were more common for SGLT2i initiators, but other safety outcomes did not differ. The results were similar regardless of chronic kidney disease status., Conclusions: SGLT2i and GLP-1 RAs led to similar kidney and cardiovascular outcomes in people with T2D, though SGLT2i initiation was associated with a lower risk of 40% eGFR decline. (Evaluating Comparative Effectiveness of Empagliflozin in Type 2 Diabetes Population With and Without Chronic Kidney Disease; NCT05465317)., Competing Interests: Funding Support and Author Disclosures This study was funded by the Boehringer Ingelheim & Lilly Diabetes Alliance. The authors meet criteria for authorship as recommended by the International Committee of Medical Journal Editors (ICMJE). Boehringer Ingelheim was given the opportunity to review the manuscript for medical and scientific accuracy as well as intellectual property considerations. Dr Butler has received consultant honoraria from Abbott, American Regent, Amgen, Applied Therapeutic, AstraZeneca, Bayer, Boehringer Ingelheim, Bristol Myers Squibb, Cardiac Dimension, Cardior, CVRx, Cytokinetics, Edwards, Element Science, Innolife, Impulse Dynamics, Imbria, Inventiva, Lexicon, Lilly, LivaNova, Janssen, Medtronics, Merck, Occlutech, Novartis, Novo Nordisk, Pfizer, Pharmacosmos, Pharmain, Roche, Sequana, SQ Innovation, and Vifor. Dr Pagidipati has received research support from Alnylam, Amgen, Boehringer Ingelheim, Eggland’s Best, Eli Lilly, Novartis, Novo Nordisk, and Verily Life Sciences; has served on consultation/advisory panels for Bayer, Boehringer Ingelheim, CRISPR Therapeutics, Eli Lilly, Esperion, AstraZeneca, Merck, Novartis, and Novo Nordisk; has served as an executive committee member for trials sponsored by Novo Nordisk and Amgen; has served on the Data Safety Monitoring Boards for trials sponsored by Johnson and Johnson and Novartis; and has served on the medical advisory board for Miga Health. Dr Fonseca has received research support (to Tulane) from Fractyl and Jaguar Gene Therapy; has received consultant honoraria from Asahi, Bayer, Abbott, Boehringer Ingelheim, and Corcept; has stock or stock options in Mellitus Health, BRAVO4Health, Amgen, and Abbott; and has patents pending for BRAVO risk engine for predicting diabetes complications and PAX4 gene therapy for type 1 diabetes. All other authors have reported that they have no relationships relevant to the contents of this paper to disclose., (Copyright © 2024 American College of Cardiology Foundation. Published by Elsevier Inc. All rights reserved.)
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- 2024
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36. Impact of aspirin dose according to race in secondary prevention of atherosclerotic cardiovascular disease: a secondary analysis of the ADAPTABLE randomised controlled trial.
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Marquis-Gravel G, Mulder H, Wruck LM, Benziger CP, Effron MB, Farrehi PM, Girotra S, Gupta K, Kripalani S, Muñoz D, Polonsky TS, Whittle J, Harrington R, Rothman R, Hernandez AF, and Jones WS
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- Aged, Female, Humans, Male, Middle Aged, Cardiovascular Diseases prevention & control, Dose-Response Relationship, Drug, Hemorrhage chemically induced, Hospitalization statistics & numerical data, Myocardial Infarction prevention & control, Myocardial Infarction ethnology, Myocardial Infarction epidemiology, Stroke prevention & control, Treatment Outcome, United States epidemiology, White, Black or African American, Aspirin administration & dosage, Aspirin therapeutic use, Atherosclerosis prevention & control, Platelet Aggregation Inhibitors administration & dosage, Platelet Aggregation Inhibitors therapeutic use, Secondary Prevention methods
- Abstract
Objectives: To evaluate whether the effectiveness and safety of low (81 mg daily) versus high-dose (325 mg daily) aspirin is consistent across races among patients with established atherosclerotic cardiovascular disease (ASCVD)., Design: A secondary analysis of the randomised controlled trial ADAPTABLE was performed., Setting: The study was conducted in 40 centres and one health plan participating in the National Patient-Centred Clinical Research Network (PCORnet) in the USA., Participants: Among 15 076 participants with established ASCVD, 14 096 had self-reported race available and were included in the analysis. Participants were divided according to self-reported race as Black (n=1311, 9.3%), White (n=11 990, 85.1%) or other race (n=795, 5.6%)., Interventions: Participants were randomised to open-label daily aspirin doses of 81 mg versus 325 mg in a 1:1 ratio for a median of 26.2 months., Primary and Secondary Outcomes Measures: The primary effectiveness endpoint was a composite of death from any cause, hospitalisation for myocardial infarction or hospitalisation for stroke. The primary safety endpoint was hospitalisation for bleeding requiring blood product transfusion., Results: Estimated cumulative incidence of the primary effectiveness endpoint at median follow-up with the 81 mg and the 325 mg daily doses were 6.70% and 7.12% in White participants (adjusted HR: 1.00 [95% CI: 0.88 to 1.15]); 12.27% and 10.69% in Black participants (adjusted HR: 1.40 [95% CI: 1.02 to 1.93]); and 6.88% and 7.69% in other participants (adjusted HR: 0.86 [95% CI: 0.54 to 1.39]) (p-interaction=0.12), respectively. There was no significant interaction between self-reported race and assigned aspirin dose regarding the secondary effectiveness and the primary safety endpoints., Conclusion: Race is not an effect modifier on the impact of aspirin dosing on effectiveness and safety in patients with established ASCVD. In clinical practice, treatment decisions regarding aspirin dose in secondary prevention of ASCVD should not be influenced by race., Trial Registration Number: NCT02697916., Competing Interests: Competing interests: None declared., (© Author(s) (or their employer(s)) 2024. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.)
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- 2024
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37. Chronic cutaneous graft-versus-host disease occurring exclusively on striae distensae.
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De Mulder H, Buchbinder N, Courville P, Tedbirt B, and Flament J
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- Humans, Chronic Disease, Male, Female, Adult, Graft vs Host Disease etiology, Graft vs Host Disease diagnosis, Graft vs Host Disease pathology, Striae Distensae pathology, Striae Distensae etiology
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- 2024
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38. Evaluating Factors Associated With Telehealth Appropriateness in Outpatient Rheumatoid Arthritis Encounters Using the Encounter Appropriateness Score for You (EASY).
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Smith ID, Solomon MJ, Mulder H, Sims C, Coles TM, Overton R, Economou-Zavlanos N, Zhao R, Adagarla B, Doss J, Henao R, Clowse MEB, Bosworth H, and Leverenz DL
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- Humans, Female, Male, Middle Aged, Prospective Studies, Aged, Adult, Outpatients, Rheumatology, Electronic Health Records, Ambulatory Care, Arthritis, Rheumatoid therapy, Telemedicine
- Abstract
Objective: Telehealth has been proposed as a safe and effective alternative to in-person care for rheumatoid arthritis (RA). The purpose of this study was to evaluate factors associated with telehealth appropriateness in outpatient RA encounters., Methods: A prospective cohort study (January 1, 2021, to August 31, 2021) was conducted using electronic health record data from outpatient RA encounters in a single academic rheumatology practice. Rheumatology providers rated the telehealth appropriateness of their own encounters using the Encounter Appropriateness Score for You (EASY) immediately following each encounter. Robust Poisson regression with generalized estimating equations modeling was used to evaluate the association of telehealth appropriateness with patient demographics, RA clinical characteristics, comorbid noninflammatory causes of joint pain, previous and current encounter characteristics, and provider characteristics., Results: During the study period, 1823 outpatient encounters with 1177 unique patients with RA received an EASY score from 25 rheumatology providers. In the final multivariate model, factors associated with increased telehealth appropriateness included higher average provider preference for telehealth in prior encounters (relative risk [RR] 1.26, 95% CI 1.21-1.31), telehealth as the current encounter modality (RR 2.27, 95% CI 1.95-2.64), and increased patient age (RR 1.05, 95% CI 1.01-1.09). Factors associated with decreased telehealth appropriateness included moderate (RR 0.81, 95% CI 0.68-0.96) and high (RR 0.57, 95% CI 0.46-0.70) RA disease activity and if the previous encounters were conducted by telehealth (RR 0.83, 95% CI 0.73-0.95)., Conclusion: In this study, telehealth appropriateness was most associated with provider preference, the current and previous encounter modality, and RA disease activity. Other factors like patient demographics, RA medications, and comorbid noninflammatory causes of joint pain were not associated with telehealth appropriateness., (Copyright © 2024 by the Journal of Rheumatology.)
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- 2024
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39. Health-related quality of life and DNA methylation-based aging biomarkers among survivors of childhood cancer.
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Plonski NM, Pan Y, Chen C, Dong Q, Zhang X, Song N, Shelton K, Easton J, Mulder H, Zhang J, Neale G, Walker E, Wang H, Webster R, Brinkman T, Krull KR, Armstrong GT, Ness KK, Hudson MM, Li Q, Huang IC, and Wang Z
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- Humans, Female, Male, Adult, Adolescent, Young Adult, Middle Aged, Aged, Biomarkers blood, Epigenesis, Genetic, Child, Quality of Life, DNA Methylation, Cancer Survivors psychology, Cancer Survivors statistics & numerical data, Neoplasms genetics, Neoplasms psychology, Neoplasms blood, Aging genetics
- Abstract
Background: Childhood cancer survivors are at high risk for morbidity and mortality and poor patient-reported outcomes, typically health-related quality of life (HRQOL). However, associations between DNA methylation-based aging biomarkers and HRQOL have not been evaluated., Methods: DNA methylation was generated with Infinium EPIC BeadChip on blood-derived DNA (median for age at blood draw = 34.5 years, range = 18.5-66.6 years), and HRQOL was assessed with age at survey (mean = 32.3 years, range = 18.4-64.5 years) from 2206 survivors in the St Jude Lifetime Cohort. DNA methylation-based aging biomarkers, including epigenetic age using multiple clocks (eg, GrimAge) and others (eg, DNAmB2M: beta-2-microglobulin; DNAmADM: adrenomedullin), were derived from the DNAm Age Calculator (https://dnamage.genetics.ucla.edu). HRQOL was assessed using the Medical Outcomes Study 36-Item Short-Form Health Survey to capture 8 domains and physical and mental component summaries. General linear models evaluated associations between HRQOL and epigenetic age acceleration (EAA; eg, EAA_GrimAge) or other age-adjusted DNA methylation-based biomarkers (eg, ageadj_DNAmB2M) after adjusting for age at blood draw, sex, cancer treatments, and DNA methylation-based surrogate for smoking pack-years. All P values were 2-sided., Results: Worse HRQOL was associated with greater EAA_GrimAge (physical component summaries: β = -0.18 years, 95% confidence interval [CI] = -0.251 to -0.11 years; P = 1.85 × 10-5; and 4 individual HRQOL domains), followed by ageadj_DNAmB2M (physical component summaries: β = -0.08 years, 95% CI = -0.124 to -0.037 years; P = .003; and 3 individual HRQOL domains) and ageadj_DNAmADM (physical component summaries: β = -0.082 years, 95% CI = -0.125 to -0.039 years; P = .002; and 2 HRQOL domains). EAA_Hannum (Hannum clock) was not associated with any HRQOL., Conclusions: Overall and domain-specific measures of HRQOL are associated with DNA methylation measures of biological aging. Future longitudinal studies should test biological aging as a potential mechanism underlying the association between poor HRQOL and increased risk of clinically assessed adverse health outcomes., (© The Author(s) 2024. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
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- 2024
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40. Breeding for resilience in finishing pigs can decrease tail biting, lameness and mortality.
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Gorssen W, Winters C, Meyermans R, Chapard L, Hooyberghs K, Depuydt J, Janssens S, Mulder H, and Buys N
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- Animals, Swine, Female, Male, Body Weight, Breeding methods, Quantitative Trait, Heritable, Phenotype, Swine Diseases genetics, Lameness, Animal, Tail injuries, Bites and Stings psychology
- Abstract
Background: Previous research showed that deviations in longitudinal data are heritable and can be used as a proxy for pigs' general resilience. However, only a few studies investigated the relationship between these resilience traits and other traits related to resilience and welfare. Therefore, this study investigated the relationship between resilience traits derived from deviations in longitudinal data and traits related to animal resilience, health and welfare, such as tail and ear biting wounds, lameness and mortality., Results: In our experiment, 1919 finishing pigs with known pedigree (133 Piétrain sires and 266 crossbred dams) were weighed every 2 weeks and scored for physical abnormalities, such as lameness and ear and tail biting wounds (17,066 records). Resilience was assessed via deviations in body weight, deviations in weighing order and deviations in observed activity during weighing. The association between these resilience traits and physical abnormality traits was investigated and genetic parameters were estimated. Deviations in body weight had moderate heritability estimates (h
2 = 25.2 to 36.3%), whereas deviations in weighing order (h2 = 4.2%) and deviations in activity during weighing (h2 = 12.0%) had low heritability estimates. Moreover, deviations in body weight were positively associated and genetically correlated with tail biting wounds (rg = 0.22 to 0.30), lameness (rg = 0.15 to 0.31) and mortality (rg = 0.19 to 0.33). These results indicate that events of tail biting, lameness and mortality are associated with deviations in pigs' body weight evolution. This relationship was not found for deviations in weighing order and activity during weighing. Furthermore, individual body weight deviations were positively correlated with uniformity at the pen level, providing evidence that breeding for these resilience traits might increase both pigs' resilience and within-family uniformity., Conclusions: In summary, our findings show that breeding for resilience traits based on deviations in longitudinal weight data can decrease pigs' tail biting wounds, lameness and mortality while improving uniformity at the pen level. These findings are valuable for pig breeders, as they offer evidence that these resilience traits are an indication of animals' general health, welfare and resilience. Moreover, these results will stimulate the quantification of resilience via longitudinal body weights in other species., (© 2024. The Author(s).)- Published
- 2024
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41. Kidney and Cardiovascular Effectiveness of Empagliflozin Compared With Dipeptidyl Peptidase-4 Inhibitors in Patients With Type 2 Diabetes.
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Edmonston D, Mulder H, Lydon E, Chiswell K, Lampron Z, Shay C, Marsolo K, Jones WS, Butler J, Shah RC, Chamberlain AM, Ford DE, Gordon HS, Hwang W, Chang A, Rao A, Bosworth HB, and Pagidipati N
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- Humans, Male, Female, Middle Aged, Glomerular Filtration Rate, Aged, Cardiovascular Diseases, Kidney Failure, Chronic complications, Treatment Outcome, Benzhydryl Compounds therapeutic use, Glucosides therapeutic use, Diabetes Mellitus, Type 2 drug therapy, Diabetes Mellitus, Type 2 complications, Dipeptidyl-Peptidase IV Inhibitors therapeutic use, Sodium-Glucose Transporter 2 Inhibitors therapeutic use, Renal Insufficiency, Chronic complications
- Abstract
Placebo-controlled trials of sodium-glucose co-transporter-2 inhibitors demonstrate kidney and cardiovascular benefits for patients with type 2 diabetes and chronic kidney disease (CKD). We used real-world data to compare the kidney and cardiovascular effectiveness of empagliflozin to dipeptidyl peptidase-4 inhibitors (DPP4is), a commonly prescribed antiglycemic medication, in a diverse population with and without CKD. Using electronic health record data from 20 large US health systems, we leveraged propensity overlap weighting to compare the outcomes for empagliflozin and DPP4i initiators with type 2 diabetes between 2016 and 2020. The primary composite kidney outcome included 40% estimated glomerular filtration rate decrease, incident end-stage kidney disease, or all-cause mortality through 2 years or censoring. We also assessed cardiovascular and safety outcomes. Of 62,197 new users, 20,279 initiated empagliflozin and 41,918 initiated DPP4i. Over a median follow-up of 1.1 years, empagliflozin prescription was associated with a lower risk of the primary outcome (hazard ratio [HR] 0.75, 95% confidence interval [CI] 0.65 to 0.87) than DPP4is. The risks for mortality (HR 0.76, 95% CI 0.62 to 0.92) and a cardiovascular composite of stroke, myocardial infarction, or all-cause mortality (HR 0.81, 95% CI 0.70 to 0.95) were also lower for empagliflozin initiators. No difference in heart failure hospitalization risk between groups was observed. Genital mycotic infections were more common in patients prescribed empagliflozin (HR 1.72, 95% CI 1.58 to 1.88). Empagliflozin was associated with a lower risk of the primary outcome in patients with CKD (HR 0.68, 95% CI 0.53 to 0.88) and those without CKD (HR 0.79, 95% CI 0.67 to 0.94). In conclusion, the initiation of empagliflozin was associated with a significantly lower risk of kidney and cardiovascular outcomes than DPP4is over a median of just over 1 year. The association with a lower risk for clinical outcomes was apparent even for patients without known CKD at baseline., Competing Interests: Declaration of competing interest Boehringer Ingelheim was given the opportunity to review the manuscript for medical and scientific accuracy as well as intellectual property considerations. Dr. Butler reports consultant honoraria from Abbott, American Regent, Amgen, Applied Therapeutic, AstraZeneca, Bayer, Boehringer Ingelheim, Bristol Myers Squibb, Cardiac Dimension, Cardior, CVRx, cytokinetics, Edwards, Element Science, Innolife, Impulse Dynamics, Imbria, Inventiva, Lexicon, Eli Lilly, LivaNova, Janssen, Medtronics, Merck, Occlutech, Novartis, Novo Nordisk, Pfizer, Pharmacosmos, Pharmain, Roche, Sequana, SQ Innovation, and Vifor. Dr. Pagidipati reports research support from Alnylam, Amgen, Boehringer Ingelheim, Eggland's Best, Eli Lilly, Novartis, Novo Nordisk, and Verily Life Sciences; consultation/advisory panels for Bayer, Boehringer Ingelheim, CRISPR Therapeutics, Eli Lilly, Esperion, AstraZeneca, Merck, Novartis, and Novo Nordisk; executive committee member for trials sponsored by Novo Nordisk and Amgen; data safety monitor board for trials sponsored by Johnson and Johnson and Novartis; medical advisory board for Miga Health. The remaining authors have no competing interests to declare., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
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42. Concordance With Screening and Treatment Guidelines for Chronic Kidney Disease in Type 2 Diabetes.
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Edmonston D, Lydon E, Mulder H, Chiswell K, Lampron Z, Marsolo K, Goss A, Ayoub I, Shah RC, Chang AR, Ford DE, Jones WS, Fonesca V, Machineni S, Fort D, Butler J, Hunt KJ, Pitlosh M, Rao A, Ahmad FS, Gordon HS, Hung AM, Hwang W, Bosworth HB, and Pagidipati NJ
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- Humans, Female, Male, Middle Aged, Retrospective Studies, Aged, Practice Guidelines as Topic, Mass Screening methods, Mass Screening standards, Angiotensin-Converting Enzyme Inhibitors therapeutic use, Angiotensin Receptor Antagonists therapeutic use, Risk Factors, Sodium-Glucose Transporter 2 Inhibitors therapeutic use, United States epidemiology, Glomerular Filtration Rate, Diabetes Mellitus, Type 2 complications, Diabetes Mellitus, Type 2 drug therapy, Renal Insufficiency, Chronic complications, Guideline Adherence statistics & numerical data
- Abstract
Importance: Chronic kidney disease (CKD) is an often-asymptomatic complication of type 2 diabetes (T2D) that requires annual screening to diagnose. Patient-level factors linked to inadequate screening and treatment can inform implementation strategies to facilitate guideline-recommended CKD care., Objective: To identify risk factors for nonconcordance with guideline-recommended CKD screening and treatment in patients with T2D., Design, Setting, and Participants: This retrospective cohort study was performed at 20 health care systems contributing data to the US National Patient-Centered Clinical Research Network. To evaluate concordance with CKD screening guidelines, adults with an outpatient clinician visit linked to T2D diagnosis between January 1, 2015, and December 31, 2020, and without known CKD were included. A separate analysis reviewed prescription of angiotensin-converting enzyme inhibitors (ACEIs) or angiotensin receptor blockers (ARBs) and sodium-glucose cotransporter 2 (SGLT2) inhibitors in adults with CKD (estimated glomerular filtration rate [eGFR] of 30-90 mL/min/1.73 m2 and urinary albumin-to-creatinine ratio [UACR] of 200-5000 mg/g) and an outpatient clinician visit for T2D between October 1, 2019, and December 31, 2020. Data were analyzed from July 8, 2022, through June 22, 2023., Exposures: Demographics, lifestyle factors, comorbidities, medications, and laboratory results., Main Outcomes and Measures: Screening required measurement of creatinine levels and UACR within 15 months of the index visit. Treatment reflected prescription of ACEIs or ARBs and SGLT2 inhibitors within 12 months before or 6 months following the index visit., Results: Concordance with CKD screening guidelines was assessed in 316 234 adults (median age, 59 [IQR, 50-67] years), of whom 51.5% were women; 21.7%, Black; 10.3%, Hispanic; and 67.6%, White. Only 24.9% received creatinine and UACR screening, 56.5% received 1 screening measurement, and 18.6% received neither. Hispanic ethnicity was associated with lack of screening (relative risk [RR], 1.16 [95% CI, 1.14-1.18]). In contrast, heart failure, peripheral arterial disease, and hypertension were associated with a lower risk of nonconcordance. In 4215 patients with CKD and albuminuria, 3288 (78.0%) received an ACEI or ARB; 194 (4.6%), an SGLT2 inhibitor; and 885 (21.0%), neither therapy. Peripheral arterial disease and lower eGFR were associated with lack of CKD treatment, while diuretic or statin prescription and hypertension were associated with treatment., Conclusions and Relevance: In this cohort study of patients with T2D, fewer than one-quarter received recommended CKD screening. In patients with CKD and albuminuria, 21.0% did not receive an SGLT2 inhibitor or an ACEI or an ARB, despite compelling indications. Patient-level factors may inform implementation strategies to improve CKD screening and treatment in people with T2D.
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- 2024
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43. Risk Factors and Outcomes Associated with Gaps in Care in Children with Congenital Heart Disease.
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Rosamilia MB, Williams J, Bair CA, Mulder H, Chiswell KE, D'Ottavio AA, Hartman RJ, Sang CJ Jr, Welke KF, Walsh MJ, Hoffman TM, Landstrom AP, Li JS, and Sarno LA
- Subjects
- Humans, Male, Female, Child, Preschool, Risk Factors, Infant, Child, North Carolina epidemiology, Health Services Accessibility, Retrospective Studies, Patient Acceptance of Health Care statistics & numerical data, Infant, Newborn, Follow-Up Studies, Heart Defects, Congenital therapy
- Abstract
Adults with congenital heart disease (CHD) benefit from cardiology follow-up at recommended intervals of ≤ 2 years. However, benefit for children is less clear given limited studies and unclear current guidelines. We hypothesize there are identifiable risks for gaps in cardiology follow-up in children with CHD and that gaps in follow-up are associated with differences in healthcare utilization. Our cohort included children < 10 years old with CHD and a healthcare encounter from 2008 to 2013 at one of four North Carolina (NC) hospitals. We assessed associations between cardiology follow-up and demographics, lesion severity, healthcare access, and educational isolation (EI). We compared healthcare utilization based on follow-up. Overall, 60.4% of 6,969 children received cardiology follow-up within 2 years of initial encounter, including 53.1%, 58.1%, and 79.0% of those with valve, shunt, and severe lesions, respectively. Factors associated with gaps in care included increased drive time to a cardiology clinic (Hazard Ratio (HR) 0.92/15-min increase), EI (HR 0.94/0.2-unit increase), lesion severity (HR 0.48 for shunt/valve vs severe), and older age (HR 0.95/month if < 1 year old and 0.94/year if > 1 year old; p < 0.05). Children with a care gap subsequently had more emergency department (ED) visits (Rate Ratio (RR) 1.59) and fewer inpatient encounters and procedures (RR 0.51, 0.35; p < 0.05). We found novel factors associated with gaps in care for cardiology follow-up in children with CHD and altered health care utilization with a gap. Our findings demonstrate a need to mitigate healthcare barriers and generate clear cardiology follow-up guidelines for children with CHD., (© 2024. The Author(s).)
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- 2024
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44. High persistence and low treatment rates of metabolic syndrome in patients with mood and anxiety disorders: A naturalistic follow-up study.
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Brouwer JMJL, Wardenaar KJ, Liemburg EJ, Doornbos B, Mulder H, and Cath DC
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- Humans, Male, Follow-Up Studies, Anxiety Disorders drug therapy, Anxiety Disorders epidemiology, Outpatients, Risk Factors, Metabolic Syndrome psychology, Cardiovascular Diseases psychology
- Abstract
Background: Patients with affective and anxiety disorders are at risk of metabolic syndrome (MetS) and, consequently, cardiovascular disease and premature death. In this study, the course and treatment of MetS was investigated using longitudinal data from a naturalistic sample of affective- and anxiety-disordered outpatients (Monitoring Outcome of psychiatric PHARmacotherapy [MOPHAR])., Methods: Demographics, clinical characteristics, medication use, and MetS components were obtained for n = 2098 patients at baseline and, in a FU-subsample of n = 507 patients, after a median follow-up (FU) of 11 months. Furthermore, pharmacological treatment rates of MetS were investigated at baseline and FU. Finally, demographic and clinical determinants of change in MetS (component) scores were investigated., Results: At baseline, 34.6 % of n = 2098 patients had MetS, 41.4 % of whom received treatment. Of patients with persisting MetS, 46.1 % received treatment for one (or more) MetS component(s) at baseline, and 56.6 % received treatment at FU. Treatment rates of solely elevated blood pressure and reduced HDL-cholesterol did significantly, but modestly, improve. Higher age, male sex, smoking behavior, low education, diabetes, and depressive versus anxiety disorder were predictors of worse outcome at FU on at least one MetS component., Limitations: We did not have data on lifestyle interventions as a form of treatment, which might partly have explained the observed low pharmacotherapeutic treatment rates., Conclusion: MetS (components) show high persistence rates in affective- and anxiety-disordered patients, and are, despite adequate monitoring, undertreated over time. This indicates that adherence and implementation of monitoring protocols should be crucially improved in psychiatric outpatients in secondary care., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
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- 2024
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45. Quality of Life and Mental Health in Older Adults with Obesity and Frailty: Associations with a Weight Loss Intervention
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Payne, M. E., Porter Starr, K. N., Orenduff, M., Mulder, H. S., McDonald, S. R., Spira, A. P., Pieper, C. F., and Bales, C. W.
- Published
- 2018
- Full Text
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46. H. Grotius, E. Rabbie, H. Mulder, Opera theologica, I, Defensio fidei catholicae de satisfactione Christi adversus Faustum Socinum Senensem, Rabbie, E., Mulder, H., ed.
- Author
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Rademaker, C.S.M., primary
- Published
- 1992
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- View/download PDF
47. Association of CYP2D6 and CYP2C19 metabolizer status with switching and discontinuing antidepressant drugs: an exploratory study.
- Author
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Brouwer JMJL, Wardenaar KJ, Nolte IM, Liemburg EJ, Bet PM, Snieder H, Mulder H, Cath DC, and Penninx BWJH
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- Humans, Male, Female, Middle Aged, Adult, Longitudinal Studies, Netherlands, Anxiety Disorders genetics, Anxiety Disorders drug therapy, Depressive Disorder drug therapy, Depressive Disorder genetics, Cytochrome P-450 CYP2D6 genetics, Cytochrome P-450 CYP2C19 genetics, Antidepressive Agents therapeutic use
- Abstract
Background: Tailoring antidepressant drugs (AD) to patients' genetic drug-metabolism profile is promising. However, literature regarding associations of ADs' treatment effect and/or side effects with drug metabolizing genes CYP2D6 and CYP2C19 has yielded inconsistent results. Therefore, our aim was to longitudinally investigate associations between CYP2D6 (poor, intermediate, and normal) and CYP2C19 (poor, intermediate, normal, and ultrarapid) metabolizer-status, and switching/discontinuing of ADs. Next, we investigated whether the number of perceived side effects differed between metabolizer statuses., Methods: Data came from the multi-site naturalistic longitudinal cohort Netherlands Study of Depression and Anxiety (NESDA). We selected depression- and/or anxiety patients, who used AD at some point in the course of the 9 years follow-up period (n = 928). Medication use was followed to assess patterns of AD switching/discontinuation over time. CYP2D6 and CYP2C19 alleles were derived using genome-wide data of the NESDA samples and haplotype data from the PharmGKB database. Logistic regression analyses were conducted to investigate the association of metabolizer status with switching/discontinuing ADs. Mann-Whitney U-tests were conducted to compare the number of patient-perceived side effects between metabolizer statuses., Results: No significant associations were observed of CYP metabolizer status with switching/discontinuing ADs, nor with the number of perceived side effects., Conclusions: We found no evidence for associations between CYP metabolizer statuses and switching/discontinuing AD, nor with side effects of ADs, suggesting that metabolizer status only plays a limited role in switching/discontinuing ADs. Additional studies with larger numbers of PM and UM patients are needed to further determine the potential added value of pharmacogenetics to guide pharmacotherapy., (© 2024. The Author(s).)
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- 2024
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48. Human Genetic Variation at rs10071329 Correlates With Adiposity-Related Traits, Modulates PPARGC1B Expression, and Alters Brown Adipocyte Function.
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Huang M, Prasad RB, Coral DE, Hjort L, Minja DTR, Mulder H, Franks PW, and Kalamajski S
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- Humans, Obesity metabolism, Genetic Variation, Norepinephrine, RNA-Binding Proteins genetics, Adipocytes, Brown metabolism, Adiposity genetics
- Abstract
Human genetic variation in PPARGC1B has been associated with adiposity, but the genetic variants that affect PPARGC1B expression have not been experimentally determined. Here, guided by previous observational data, we used clustered regularly interspaced short palindromic repeats/CRISPR associated protein 9 (CRISPR/Cas9) to scarlessly edit the alleles of the candidate causal genetic variant rs10071329 in a human brown adipocyte cell line. Switching the rs10071329 genotype from A/A to G/G enhanced PPARGC1B expression throughout the adipogenic differentiation, identifying rs10071329 as a cis-expression quantitative trait loci (eQTL). The higher PPARGC1B expression in G/G cells coincided with greater accumulation of triglycerides and higher expression of mitochondria-encoded genes, but without significant effects on adipogenic marker expression. Furthermore, G/G cells had improved basal- and norepinephrine-stimulated mitochondrial respiration, possibly relating to enhanced mitochondrial gene expression. The G/G cells also exhibited increased norepinephrine-stimulated glycerol release, indicating improved lipolysis. Altogether, our results showed that rs10071329 is a cis-eQTL, with the G/G genotype conferring enhanced PPARGC1B expression, with consequent improved mitochondrial function and response to norepinephrine in brown adipocytes. This genetic variant, and as yet undetermined eQTLs, at PPARGC1B could prove useful in genotype-based precision medicine for obesity treatment., (© 2024 by the American Diabetes Association.)
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- 2024
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49. Association of Circulating Complement Pathway Gene Expression With Progression of Idiopathic Pulmonary Fibrosis
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Swaminathan, A.C., primary, Mulder, H., additional, Neely, M.L., additional, Belperio, J.A., additional, Patel, N.M., additional, Palmer, S.M., additional, and Todd, J.L., additional
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- 2023
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50. Circulating Urokinase-Type Plasminogen Activator Receptor Protein Highly Correlates With the Severity of Idiopathic Pulmonary Fibrosis (IPF): Data From the IPF-PRO Registry
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Todd, J.L., primary, Mulder, H., additional, Neely, M.L., additional, Belperio, J.A., additional, Lasky, J.A., additional, Luckhardt, T.R., additional, Palmer, S.M., additional, Hesslinger, C., additional, Schlange, T., additional, and Leonard, T.B., additional
- Published
- 2023
- Full Text
- View/download PDF
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