1. Genomic and transcriptomic analyses identify distinctive features of triple-negative inflammatory breast cancer.
- Author
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Wang X, Zhao L, Song X, Wu X, Krishnamurthy S, Semba T, Shao S, Knafl M, Coffer LW 2nd, Alexander A, Vines A, Bopparaju S, Woodward WA, Chu R, Zhang J, Yam C, Loo LWM, Nasrazadani A, Huong LP, Woodman SE, Futreal A, Tripathy D, and Ueno NT
- Abstract
Triple-negative inflammatory breast cancer (TN-IBC) is the most aggressive type of breast cancer, yet its defining genomic, molecular, and immunological features remain largely unknown. In this study, we performed the largest and most comprehensive genomic and transcriptomic analyses of prospectively collected TN-IBC patient samples from a phase II clinical trial (ClinicalTrials.gov, NCT02876107, registered on August 22, 2016) and compared them to similarly analyzed stage III TN-non-IBC patient samples (ClinicalTrials.gov, NCT02276443, registered on October 21, 2014). We found that TN-IBC tumors have distinctive genomic, molecular, and immunological characteristics, including a lower tumor mutation load than TN-non-IBC, and an association of immunosuppressive tumor-infiltrating immune components with an unfavorable response to neoadjuvant chemotherapy. To our knowledge, this is the only study in which TN-IBC and TN-non-IBC samples were collected prospectively. Our analysis improves the understanding of the molecular landscape of the most aggressive subtype of breast cancer. Further studies are needed to discover novel prognostic biomarkers and druggable targets for TN-IBC., Competing Interests: Competing interests C.Y. has received research support (to the institution) from Amgen, Merck, Genentech, and GSK. N.T.U. holds consulting roles with the following companies: AstraZeneca Pharmaceuticals LP (USA and UK), Bayer AG, Bristol Myers Squibb Company, Carna Biosciences, Inc., CytoDyn Inc., Daiichi Sankyo Co., Ltd., Eisai Co., Ltd., Eli Lilly and Company, Genentech, Inc., Genomic Health, Inc., Gilead Sciences, Inc., Lavender Health, OncoCyte Corporation, Pear Bio, Peptilogics, Inc., Pfizer Inc., Phoenix Molecular Designs, Preferred Medicine, Carisma Therapeutics, Inc., Sysmex Corporation, Takeda Pharmaceutical Company Limited (Japan), and Unitech Medical, Inc. N.T.U. holds consulting roles with the following companies: AstraZeneca Pharmaceuticals LP (USA and UK), Bayer AG, Bristol Myers Squibb Company, Carna Biosciences, Inc., CytoDyn Inc., Daiichi Sankyo Co., Ltd., Eisai Co., Ltd., Eli Lilly and Company, Genentech, Inc., Genomic Health, Inc., Gilead Sciences, Inc., Lavender Health, OncoCyte Corporation, Pear Bio, Peptilogics, Inc., Pfizer Inc., Phoenix Molecular Designs, Preferred Medicine, Carisma Therapeutics, Inc., Sysmex Corporation, Takeda Pharmaceutical Company Limited (Japan), and Unitech Medical, Inc. N.T.U. has ownership of stock: Pear Bio and Phoenix Molecular Designs. N.T.U. holds speaker or preceptorship roles with the following companies: Daiichi Sankyo Co., Ltd., Kyowa Kirin Co., Ltd., Pfizer Inc., AstraZeneca Pharmaceuticals LP, Total Health Conferencing, and Eli Lilly and Company. N.T.U. has research agreements in place with the following companies: AnHeart Therapeutics Inc., Eisai Co., Ltd., Gilead Sciences, Inc., Phoenix Molecular Designs, Daiichi Sankyo, Inc., Puma Biotechnology, Inc., Merck Co., Oncolys BioPharma Inc., OBI Pharma Inc., ChemDiv, Inc., Tolero Pharmaceuticals, Inc., and VITRAC Therapeutics, LLC. All other authors have no relevant conflict of interest disclosures., (© 2024. The Author(s).)
- Published
- 2024
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