Search

The American Ornithological Society (AOS) has announced the recipients of the 2023 Early Professional Awards. Glaucia Del-Rio, Carrie Branch, and Sara Lipshutz have been recognized for their outstanding work in the field of ornithology. Dr. Glaucia Del-Rio, currently a Rose Postdoctoral Fellow at the Cornell Lab of Ornithology, is studying the avian diversity in Amazonia. Dr. Carrie Branch, an assistant professor at the University of Western Ontario, focuses on the evolution of communication and cognition in North American chickadees. Dr. Sara Lipshutz, an assistant professor at Loyola University in Chicago, studies the evolution of behavior and female competition in birds. The awardees received a cash prize and a framed certificate in recognition of their achievements. [Extracted from the article]

The following letter, from a network of women zoologists, is a reply to the article of AlShebli et al. (2020), which suggests that female protégés reap more benefits when mentored by men and concludes that female mentors hinder the success of their female protégés and the quality of their impact. This contribution has two parts. First, we highlight the most relevant methodological flaws which, in our opinion, may have impacted the conclusions of AlShebli et al. (2020). Second, we discuss issues pertaining to women in science, bring a perspective of Women in Zoology and discuss how current diversity policies are positively changing our field.

During the past 100 years in densely populated south-eastern Brazil, wetlands have been severely transformed due to urbanization, agriculture and mining. The recently discovered São Paulo Marsh Antwren (Formicivora paludicola) is endemic to these wetlands, and is listed as "Critically Endangered" by the IUCN. The species is only found in an area of 1.42 km2, it has a sparse and fragmented distribution, low dispersal capacity, and has probably lost around 300 km2 of habitat in the past 100 years. Furthermore, very little is known about F. paludicola natural history, and so it is difficult to construct a robust conservation plan. Using Kernel home range estimations and the Adjusted-SD/Torus Shift test (a novel tool for animal-habitat association studies), we showed that the species avoids patches of the alien invasive ginger lily (Hedychium coronarium). Given the high density of their population (3.6 mature individuals/ha), F. paludicola could thrive in relatively small areas of suitable wetlands protected from human occupation and water contamination, however special attention should be paid to biological invasions, which may represent a serious threat to the remaining populations. Protecting a few small wetlands used by F. paludicola would be an important step towards general conservation and restoration of Atlantic Forest wetlands and its endemic endangered species.

Small populations of endangered species can be impacted by genetic processes such as drift and inbreeding that reduce population viability. As such, conservation genetic analyses that assess population levels of genetic variation and levels of gene flow can provide important information for managing threatened species. The São Paulo Marsh Antwren (Formicivora paludicola) is a recently-described and critically endangered bird from São Paulo State (Brazil) whose total estimated population is around 250-300 individuals, distributed in only 15 isolated marshes around São Paulo metropolitan region. We used microsatellite DNA markers to estimate the population genetic characteristics of the three largest remaining populations of this species all within 60 km of each other. We detected a high and significant genetic structure between all populations (overall FST = 0.103) which is comparable to the highest levels of differentiation ever documented for birds, (e.g., endangered birds found in isolated populations on the tops of African mountains), but also evidence for first-generation immigrants, likely from small local unsampled populations. Effective population sizes were small (between 28.8-99.9 individuals) yet there are high levels of genetic variability within populations and no evidence for inbreeding. Conservation implications of this work are that the high levels of genetic structure suggests that translocations between populations need to be carefully considered in light of possible local adaptation and that remaining populations of these birds should be managed as conservation units that contain both main populations studied here but also small outlying populations which may be a source of immigrants.

Over the last 200 years the wetlands of the Upper Tietê and Upper Paraíba do Sul basins, in the southeastern Atlantic Forest, Brazil, have been almost-completely transformed by urbanization, agriculture and mining. Endemic to these river basins, the São Paulo Marsh Antwren (Formicivora paludicola) survived these impacts, but remained unknown to science until its discovery in 2005. Its population status was cause for immediate concern. In order to understand the factors imperiling the species, and provide guidelines for its conservation, we investigated both the species' distribution and the distribution of areas of suitable habitat using a multiscale approach encompassing species distribution modeling, fieldwork surveys and occupancy models. Of six species distribution models methods used (Generalized Linear Models, Generalized Additive Models, Multivariate Adaptive Regression Splines, Classification Tree Analysis, Artificial Neural Networks and Random Forest), Random Forest showed the best fit and was utilized to guide field validation. After surveying 59 sites, our results indicated that Formicivora paludicola occurred in only 13 sites, having narrow habitat specificity, and restricted habitat availability. Additionally, historic maps, distribution models and satellite imagery showed that human occupation has resulted in a loss of more than 346 km2 of suitable habitat for this species since the early twentieth century, so that it now only occupies a severely fragmented area (area of occupancy) of 1.42 km2, and it should be considered Critically Endangered according to IUCN criteria. Furthermore, averaged occupancy models showed that marshes with lower cattail (Typha dominguensis) densities have higher probabilities of being occupied. Thus, these areas should be prioritized in future conservation efforts to protect the species, and to restore a portion of Atlantic Forest wetlands, in times of unprecedented regional water supply problems.

National Academies of Sciences, Engineering, and Medicine (2018) Sexual harassment of women: climate, culture, and consequences in academic sciences, engineering, and medicine. OPINION ZOOLOGIA 38: e61968 | https://doi.org/10.3897/zoologia.38.e61968 | February 26, 2021 Why we shouldn't blame women for gender disparity in academia: perspectives of women in zoology Veronica Slobodian 1, Karla D.A. Soares 2, Rafaela L. Falaschi 3, Laura R. Prado 4, Priscila Camelier 5, Thaís B. Guedes 6, Laura C. Leal 7, Annie S. Hsiou 8, Glaucia Del-Rio 9, Eliza R. Costa 10, Karla R.C. Pereira 11, Annelise B. D'Angiolella 12, Shirliane de A. Sousa 13, Luisa M. Diele-Viegas 14 1 Laboratório de Ictiologia Sistemática, Departamento de Zoologia, Instituto de Ciências Biológicas, Universidade de Brasília. The initiative "Mulheres na Ciência BR" (Women in Science Brazil), founded by a group of zoologists, started as a social network community of women scientists in 2016 and has since grown to establish an actively-curated digital magazine (http:// www.mulheresnaciencia.com.br), where women of all fields and backgrounds showcase their voices and discuss science and gender perspectives in academia. [Extracted from the article]

Our understanding of Amazonian biogeography is quickly increasing, catalyzed by the growing use of genomic datasets, improved knowledge of species distributions, and the accumulation of new data on the geological and climatic history of the region. The high number of species in Amazonia and their intricate patterns of geographic distribution triggered the development of many diversification hypotheses that shaped historical biogeography as a discipline. Here, we present a historical overview of avian biogeographic studies in Amazonia, their recent advances, outstanding questions, and future directions. We focus on how new approaches have led to novel understandings of the distribution patterns and diversification processes that underpin avian diversity. We show how genomic tools are being used to establish new hypotheses about the drivers of diversification and highlight the importance of recent studies of birds in previously overlooked environments, such as floodplains and open vegetation enclaves. We emphasize the importance of gene flow, species traits, and habitat affinities in studying diversification processes to fully acknowledge the complexity of Amazonian ecosystems and their history. We then discuss the current gaps in Amazonian taxonomic and biogeographic knowledge, with a focus on the issues that we believe hinder our understanding of the field. Amazonia has been facing increasing levels of forest loss due to agricultural expansion, infrastructure development, mining, climate change, and illegal activities catalyzed by weak governance. To halt biodiversity loss, it is crucial to increase our knowledge of the natural history and biogeography of Amazonian species. We suggest increasing incentives for research and training at institutions based in the region, as well as the establishment of partnerships with governments, local communities, NGOs, and international institutions to bring diverse communities together to address crucial questions. [ABSTRACT FROM AUTHOR]

Can knowledge about genome architecture inform biogeographic and phylogenetic inference? Selection, drift, recombination, and gene flow interact to produce a genomic landscape of divergence wherein patterns of differentiation and genealogy vary nonrandomly across the genomes of diverging populations. For instance, genealogical patterns that arise due to gene flow should be more likely to occur on smaller chromosomes, which experience high recombination, whereas those tracking histories of geographic isolation (reduced gene flow caused by a barrier) and divergence should be more likely to occur on larger and sex chromosomes. In Amazonia, populations of many bird species diverge and introgress across rivers, resulting in reticulated genomic signals. Herein, we used reduced representation genomic data to disentangle the evolutionary history of 4 populations of an Amazonian antbird, Thamnophilus aethiops , whose biogeographic history was associated with the dynamic evolution of the Madeira River Basin. Specifically, we evaluate whether a large river capture event ca. 200 Ka, gave rise to reticulated genealogies in the genome by making spatially explicit predictions about isolation and gene flow based on knowledge about genomic processes. We first estimated chromosome-level phylogenies and recovered 2 primary topologies across the genome. The first topology (T1) was most consistent with predictions about population divergence and was recovered for the Z-chromosome. The second (T2), was consistent with predictions about gene flow upon secondary contact. To evaluate support for these topologies, we trained a convolutional neural network to classify our data into alternative diversification models and estimate demographic parameters. The best-fit model was concordant with T1 and included gene flow between non-sister taxa. Finally, we modeled levels of divergence and introgression as functions of chromosome length and found that smaller chromosomes experienced higher gene flow. Given that (1) genetrees supporting T2 were more likely to occur on smaller chromosomes and (2) we found lower levels of introgression on larger chromosomes (and especially the Z-chromosome), we argue that T1 represents the history of population divergence across rivers and T2 the history of secondary contact due to barrier loss. Our results suggest that a significant portion of genomic heterogeneity arises due to extrinsic biogeographic processes such as river capture interacting with intrinsic processes associated with genome architecture. Future phylogeographic studies would benefit from accounting for genomic processes, as different parts of the genome reveal contrasting, albeit complementary histories, all of which are relevant for disentangling the intricate geogenomic mechanisms of biotic diversification. [Amazonia; biogeography; demographic modeling; gene flow; gene tree; genome architecture; geogenomics; introgression; linked selection; neural network; phylogenomic; phylogeography; reproductive isolation; speciation; species tree.] [ABSTRACT FROM AUTHOR]

Aim: Distribution maps for Amazonian birds are often limited to species‐level taxonomy even though many subspecies represent biological species. We provide digital maps depicting subspecies‐level distributions of Neotropical birds in the Amazonas River basin and adjoining areas. Location: Amazon region, which includes the entire Amazon basin, the east slope of the tropical Andes, French Guiana, Suriname, Guyana, south Venezuela (Bolivar and Amazonas departments), parts of the Brazilian Cerrado and the Araguaia‐Tocantins basin. Taxon: Birds (Class Aves). Methods: To build the distribution maps, we compiled a point‐locality database of 620,000 records, 90% of which represent specimens vouchered in research collections. After manually cleaning and optimising the quality of the point localities, we generated extent‐of‐occurrence polygons at the subspecies level using a concave hull function. We corrected each polygon based on the literature and expert knowledge. We used this data set to define zoogeographical regions based on multidimensional scaling and clustering analyses, and then compared subspecies‐defined regions to zoogeographic regions inferred from species‐level data. Results: We inferred range polygons for 3990 subspecies, representing 2043 species from 65 families. The average distribution size was 955,739 km2, with half of the taxa having range sizes smaller than 230,484 km2 (median value) and nearly one‐quarter of all subspecies having ranges smaller than 50,000 km2. We identified 10 zoogeographical regions from the subspecies data set in comparison with four areas based on a species‐level analysis of the same data. The 10 zoogeographical regions are largely congruent with previously identified areas of endemism. Main Conclusions: The new maps of Amazonian bird subspecies distributions allow biodiversity studies (e.g. macroecology, evolution, and conservation) to be conducted at the subspecies level, and facilitate biogeographic, ecological, evolutionary and conservation research on birds in the most biologically diverse region in the world. [ABSTRACT FROM AUTHOR]

During the past 100 years in densely populated south-eastern Brazil, wetlands have been severely transformed due to urbanization, agriculture and mining. The recently discovered São Paulo Marsh Antwren (Formicivora paludicola) is endemic to these wetlands, and is listed as “Critically Endangered” by the IUCN. The species is only found in an area of 1.42 km2, it has a sparse and fragmented distribution, low dispersal capacity, and has probably lost around 300 km2 of habitat in the past 100 years. Furthermore, very little is known about F. paludicola natural history, and so it is difficult to construct a robust conservation plan. Using Kernel home range estimations and the Adjusted-SD/Torus Shift test (a novel tool for animal-habitat association studies), we showed that the species avoids patches of the alien invasive ginger lily (Hedychium coronarium). Given the high density of their population (3.6 mature individuals/ha), F. paludicola could thrive in relatively small areas of suitable wetlands protected from human occupation and water contamination, however special attention should be paid to biological invasions, which may represent a serious threat to the remaining populations. Protecting a few small wetlands used by F. paludicola would be an important step towards general conservation and restoration of Atlantic Forest wetlands and its endemic endangered species. [ABSTRACT FROM AUTHOR]

The Neotropical avian genus Thraupis (Passeriformes, Thraupidae) currently comprises seven species that are widespread and abundant throughout their ranges. However, no phylogenetic hypothesis with comprehensive intraspecific sampling is available for the group and, therefore, currently accepted species limits remain untested. We obtained sequence data for two mitochondrial (ND2, cyt-b) and three non-coding nuclear (TGFB2, MUSK, and βF5) markers from 118 vouchered museum specimens. We conducted population structure and coalescent-based species-tree analyses using a molecular clock calibration. We integrated these results with morphometric and coloration analyses of 1,003 museum specimens to assess species limits within Thraupis. Our results confirm that Thraupis is a monophyletic group and support its origin in the late Miocene and subsequent diversification during the Pleistocene. However, we found conflicts with previous phylogenies. We recovered Thraupis glaucocolpa to be sister to all other species in the genus, and T. cyanoptera to the remaining five species. Our phylogenetic trees and population structure analyses uncovered phylogeographic structure within Thraupis episcopus that is congruent with geographic patterns of phenotypic variation and distributions of some named taxa. The first genetic and phenotypic cluster in T. episcopus occurs east of the Andes and is diagnosed by the white patch on the lesser and median wing coverts, whereas the second group has a blue patch on the wing and distributes to the west of Colombia's eastern Andes. Finally, we present evidence of hybridization and ongoing gene flow between several taxa at different taxonomic levels and discuss its taxonomic implications. [ABSTRACT FROM AUTHOR]

Secondary contact between species often results in the formation of a hybrid zone, with the eventual fates of the hybridizing species dependent on evolutionary and ecological forces. We examine this process in the Amazon Basin by conducting the first genomic and phenotypic characterization of the hybrid zone formed after secondary contact between two obligate army‐ant‐followers: the White‐breasted Antbird (Rhegmatorhina hoffmannsi) and the Harlequin Antbird (Rhegmatorhina berlepschi). We found a major geographic displacement (∼120 km) between the mitochondrial and nuclear clines, and we explore potential hypotheses for the displacement, including sampling error, genetic drift, and asymmetric cytonuclear incompatibilities. We cannot exclude roles for sampling error and genetic drift in contributing to the discordance; however, the data suggest expansion and unidirectional introgression of hoffmannsi into the distribution of berlepschi. [ABSTRACT FROM AUTHOR]

Copyright of Journal of Ornithology is the property of Springer Nature and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Whole-genome sequencing projects are increasingly populating the tree of life and characterizing biodiversity1–4. Sparse taxon sampling has previously been proposed to confound phylogenetic inference5, and captures only a fraction of the genomic diversity. Here we report a substantial step towards the dense representation of avian phylogenetic and molecular diversity, by analysing 363 genomes from 92.4% of bird families—including 267 newly sequenced genomes produced for phase II of the Bird 10,000 Genomes (B10K) Project. We use this comparative genome dataset in combination with a pipeline that leverages a reference-free whole-genome alignment to identify orthologous regions in greater numbers than has previously been possible and to recognize genomic novelties in particular bird lineages. The densely sampled alignment provides a single-base-pair map of selection, has more than doubled the fraction of bases that are confidently predicted to be under conservation and reveals extensive patterns of weak selection in predominantly non-coding DNA. Our results demonstrate that increasing the diversity of genomes used in comparative studies can reveal more shared and lineage-specific variation, and improve the investigation of genomic characteristics. We anticipate that this genomic resource will offer new perspectives on evolutionary processes in cross-species comparative analyses and assist in efforts to conserve species. A dataset of the genomes of 363 species from the Bird 10,000 Genomes Project shows increased power to detect shared and lineage-specific variation, demonstrating the importance of phylogenetically diverse taxon sampling in whole-genome sequencing. [ABSTRACT FROM AUTHOR]

Stretching for more than 10,000 ha in the Metropolitan Area of São Paulo, southeastern Brazil, Serra da Cantareira comprises the largest native urban rainforest in the World, harboring a rich and diverse Atlantic Forest avifauna. Despite its closeness to major urban areas, few bird surveys have been conducted there. In this article we present an updated compilation of all bird species recorded for Serra da Cantareira, including personal records from the authors. A total of 326 species have been recorded for Serra da Cantareira since 1901; of these, nine have not been sighted there for the last two decades. The number of bird species endemic to the Atlantic Forest is high (80), and seven of its species are globally threatened. According to multivariate analyses the species diversity at Serra da Cantareira is similar to other regions of the Atlantic Forest, such as Carlos Botelho and Intervales state parks, where the vegetation is also ombrophilous dense forest. We discuss local changes in the avifaunal composition over the last decades and suggest the incorporation of large forest remnants to the Cantareira State Park to mitigate the impact of the northern section of Rodoanel Mário Covas, a highway (SP-21) that will soon be operational and will negatively impact the biodiversity of Serra da Cantareira. [ABSTRACT FROM AUTHOR]

The taxonomy of the polytypic and wide-ranging Gray-necked Wood-rail, Aramides cajaneus is reviewed, based on external morphology and voice. Throughout its distribution, there is extensive plumage variation, much of it taxonomically uninformative. However, through three informative plumage characters, as well as morphometric and vocal variation, three phylogenetic species were identified within what is today known as A. cajaneus, all of which already had available names: A. albiventris Lawrence, 1868, from southern Mexico to northeastern Costa Rica, A. cajaneus (Statius Müller, 1776) (sensu stricto), from southwestern Costa Rica to Argentina, and A. avicenniae Stotz, 1992, from a small section of the coast of southeastern Brazil. A. albiventris presents extensive plumage variation, but with no geographic structure. The song of A. cajaneus and A. avicenniae is strikingly and completely different from the song of A. albiventris. A previously unnoticed parapatric pattern of distribution of A. cajaneus and its congener A. saracura in southeastern Brazil is described, and we clarify that the name A. plumbeicollis, included in the synonymy of A. albiventris, was first made available in 1892, rather than in 1888 as is widely referred. In addition, plumage variation in A. ypecaha, A. wolfi, and A. mangle is discussed. [ABSTRACT FROM AUTHOR]

Copyright of Journal of Ornithology is the property of Springer Nature and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

The One Hundred Third Annual Meeting of the Wilson Ornithological Society (WOS) was held 17-20 July 2022 at the Doubletree Hotel of Santa Fe, New Mexico. The WOS Executive Committee [...]

The One Hundred Second Annual Meeting of the Wilson Ornithological Society (WOS) was held 15-19 April 2021 in joint session with the Northeast Natural History Conference (NENHC) and the Association [...]

The One-hundredth Annual Meeting of the Wilson Ornithological Society was held jointly with the Association of Field Ornithologists 27-30 October 2019 at the Grand Hotel of Cape May, New Jersey. [...]

ABSTRACT.--Clytoctantes atrogularis Lanyon, Stotz and Willard, 1990 (Thamnophilidae) is one of the most mysterious and poorly known birds of the Neotropics. Endemic to Amazonian Brazil, it was known only from [...]

The Sao Paulo Marsh Antwren (Formicivora paludicola) is a recently discovered species in the family Thamnophilidae that inhabits marshes in the vicinity of the Sao Paulo metropolitan region, which is the most populous area of South America and within the Brazilian Southeastern Atlantic Forest. This species should be considered 'Critically Endangered' following IUCN criteria, as it has a total area of occupancy of only 1.42 [km.sup.2], a sparse and fragmented distribution, low dispersal capacity, and has lost ~300 [km.sup.2] of habitat in the last 200 years. F. paludicola was discovered on the verge of extinction, and virtually nothing is known about its natural history, breeding biology, and life history, hence compromising any conservation effort. By capturing and 1 banding individuals from the three largest populations of Sao Paulo Marsh Antwrens, we provide the first assessment of the breeding period and molt cycles of F. paludicola. Our observations indicate breeding season is from October to February, and the species follows the Complex Basic molt strategy, with a partial pre-formative molt. F. paludicola also shows morphological sexual dimorphism, with males slightly larger than females. Received 11 January 2015. Accepted 28 November 2015. Key words: banding, breeding period, conservation, molt cycle, sexual dimorphism., METHODS Data collection was carried out in the three largest marshes known to be occupied by F. paludicola, located in three different cities in Sao Paulo Metropolitan Region, Sao Paulo [...]