156 results on '"Foo, J.N."'
Search Results
2. P.112 Effect of early paternal caregiving and genotype rs25531 polymorphisms on the adult relationship with the partner
- Author
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Bonassi, A., primary, Cataldo, I., additional, Tandiono, M., additional, Foo, J.N., additional, Lepri, B., additional, and Esposito, G., additional
- Published
- 2021
- Full Text
- View/download PDF
3. Investigation of the predisposing factor of pemphigus and its clinical subtype through a genome-wide association and next generation sequence analysis
- Author
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Sun, Y., primary, Liu, H., additional, Yang, B., additional, Wang, C., additional, Foo, J.N., additional, Bao, F., additional, Irwanto, A., additional, Yu, G., additional, Fu, X., additional, Wang, Z., additional, You, J., additional, Liu, J., additional, Zhou, G., additional, and Zhang, F., additional
- Published
- 2018
- Full Text
- View/download PDF
4. Screening for TMEM230 mutations in young onset Parkinson’s disease
- Author
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Ma, D., primary, Ng, S.H., additional, Setiawan, F., additional, Foo, J.N., additional, Ng, E.Y., additional, Zhao, Y., additional, Liu, J.-J., additional, and Tan, E.K., additional
- Published
- 2018
- Full Text
- View/download PDF
5. A homozygous FITM2 mutation causes a deafness-dystonia syndrome with motor regression and signs of ichthyosis and sensory neuropathy
- Author
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Zazo Seco, C., Castells Nobau, A., Joo, S.H., Schraders, M., Foo, J.N., Voet, M. van der, Velan, S.S., Nijhof, B., Oostrik, J., Vrieze, E. de, Katana, R., Mansoor, A., Huynen, M.A., Szklarczyk, R.J., Oti, M.O., Tranebjaerg, L., WIjk, E. van, Scheffer-de Gooyert, J.M., Siddique, S., Baets, J., Jonghe, P. De, Kazmi, S.A., Sadananthan, S.A., Warrenburg, B.P.C. van de, Khor, C.C., Gopfert, M.C., Qamar, R., Schenck, A., Kremer, H., Siddiqi, S, Zazo Seco, C., Castells Nobau, A., Joo, S.H., Schraders, M., Foo, J.N., Voet, M. van der, Velan, S.S., Nijhof, B., Oostrik, J., Vrieze, E. de, Katana, R., Mansoor, A., Huynen, M.A., Szklarczyk, R.J., Oti, M.O., Tranebjaerg, L., WIjk, E. van, Scheffer-de Gooyert, J.M., Siddique, S., Baets, J., Jonghe, P. De, Kazmi, S.A., Sadananthan, S.A., Warrenburg, B.P.C. van de, Khor, C.C., Gopfert, M.C., Qamar, R., Schenck, A., Kremer, H., and Siddiqi, S
- Abstract
Contains fulltext : 169958.pdf (publisher's version ) (Open Access), A consanguineous family from Pakistan was ascertained to have a novel deafness-dystonia syndrome with motor regression, ichthyosis-like features and signs of sensory neuropathy. By applying a combined strategy of linkage analysis and whole-exome sequencing in the presented family, a homozygous nonsense mutation, c.4G>T (p.Glu2*), in FITM2 was identified. FITM2 and its paralog FITM1 constitute an evolutionary conserved protein family involved in partitioning of triglycerides into cellular lipid droplets. Despite the role of FITM2 in neutral lipid storage and metabolism, no indications for lipodystrophy were observed in the affected individuals. In order to obtain independent evidence for the involvement of FITM2 in the human pathology, downregulation of the single Fitm ortholog, CG10671, in Drosophila melanogaster was pursued using RNA interference. Characteristics of the syndrome, including progressive locomotor impairment, hearing loss and disturbed sensory functions, were recapitulated in Drosophila, which supports the causative nature of the FITM2 mutation. Mutation-based genetic counseling can now be provided to the family and insight is obtained into the potential impact of genetic variation in FITM2.
- Published
- 2017
6. Investigation of the predisposing factor of pemphigus and its clinical subtype through a genome‐wide association and next generation sequence analysis.
- Author
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Sun, Y., Liu, H., Yang, B., Wang, C., Foo, J.N., Bao, F., Irwanto, A., Yu, G., Fu, X., Wang, Z., You, J., Liu, J., Zhou, G., and Zhang, F.
- Subjects
SEQUENCE analysis ,REPRODUCTION - Abstract
Background: Pemphigus is an autoimmune blistering disease with pemphigus vulgaris (PV) and foliaceus (PF) as the two major histological subtypes. Associations with HLA molecules have been suggested, but specific HLA risk variants as well as non‐HLA risk variants remain to be discovered. Methods: We performed a two‐stage genome‐wide association study in the Chinese Han population through a genome‐wide discovery analysis and follow‐up validation analysis in a total number of 210 PV, 159 PF and 2493 healthy controls. HLA imputation as well as high coverage next generation sequencing based HLA genotyping was employed to investigate the association of classical HLA alleles and amino acid change. Results: We have discovered independent novel associations with PF at rs2178077 on 12q24.33, located next to RAN (PPF = 1.57 × 10−9) and rs3888722 within the MHC region (P = 6.73 × 10−9). For the HLA variants, we confirmed independent genome‐wide level risk associations in HLA‐DQB1 and HLA‐DRB1, with DQB1*05:03 to be the strongest association with PV (P = 8.59 × 10−68, OR = 31.16) and PF (P = 4.84 × 10−17, OR = 5.64). In addition, DRB1*14 was demonstrated to be a second independent variants (P = 4.2 × 10−63, OR = 35.47) for PV, while DRB1*04:06 was demonstrated to be the second independent signal (P = 7.44 × 10−13, OR = 5.58) for PF. Conclusions: These findings advance our understanding of the genetic basis of pemphigus susceptibility and may offer opportunities for risk prediction and preventive treatment for pemphigus, in particular for PV. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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7. Molecular diagnosis of abnormalities of HDL cholesterol by targeted next-generation sequencing
- Author
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Sadananda, S., primary, Foo, J.N., additional, Toh, M.T., additional, Francis, G., additional, Frohlich, J., additional, Khor, C.C., additional, and Brunham, L., additional
- Published
- 2015
- Full Text
- View/download PDF
8. 2q36.3 is associated with prognosis for oestrogen receptor-negative breast cancer patients treated with chemotherapy
- Author
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Li, J. (Jingmei), Lindström, L.S. (Linda), Foo, J.N. (Jia), Rafiq, M. (Meena), Schmidt, M.K. (Marjanka), Pharoah, P.D.P. (Paul), Michailidou, K. (Kyriaki), Dennis, J. (Joe), Bolla, M.K. (Manjeet), Wang, Q. (Qing), Veer, L.J. (Laura) van 't, Cornelissen, S. (Sten), Rutgers, E.J.T. (Emiel), Southey, M.C. (Melissa), Apicella, C. (Carmel), Dite, G.S. (Gillian), Hopper, J.L. (John), Fasching, P.A. (Peter), Haeberle, L. (Lothar), Ekici, A.B. (Arif), Beckmann, M.W. (Matthias), Blomqvist, C. (Carl), Muranen, T.A. (Taru), Aittomäki, K. (Kristiina), Lindblom, A. (Annika), Margolin, S. (Sara), Mannermaa, A. (Arto), Kosma, V-M. (Veli-Matti), Hartikainen, J. (Jaana), Kataja, V. (Vesa), Chenevix-Trench, G. (Georgia), Investigators, K. (Kconfab), Phillips, K.-A. (Kelly-Anne), McLachlan, S.-A. (Sue-Anne), Lambrechts, D. (Diether), Thienpont, B. (Bernard), Smeets, A. (Ann), Wildiers, H. (Hans), Chang-Claude, J. (Jenny), Flesch-Janys, D. (Dieter), Seibold, P. (Petra), Rudolph, A. (Anja), Giles, G.G. (Graham), Baglietto, L. (Laura), Severi, G. (Gianluca), Haiman, C.A. (Christopher), Henderson, B.E. (Brian), Schumacher, F.R. (Fredrick), Le Marchand, L. (Loic), Kristensen, V. (Vessela), Alnæs, G.G. (Grethe), Borresen-Dale, A.-L. (Anne-Lise), Nord, S. (Silje), Winqvist, R. (Robert), Pykäs, K. (Katri), Jukkola-Vuorinen, A. (Arja), Grip, M. (Mervi), Andrulis, I.L. (Irene), Knight, J.A. (Julia), Glendon, G. (Gord), Tchatchou, S. (Sandrine), Devilee, P. (Peter), Tollenaar, R.A.E.M. (Rob), Seynaeve, C.M. (Caroline), Hooning, M.J. (Maartje), Kriege, M. (Mieke), Hollestelle, A. (Antoinette), Ouweland, A.M.W. (Ans) van den, Li, Y. (Yi), Hamann, U. (Ute), Torres, D. (Diana), Ulmer, H.U. (Hans), Rüdiger, T. (Thomas), Shen, C-Y. (Chen-Yang), Hsiung, C.-N. (Chia-Ni), Wu, P.-E. (Pei-Ei), Chen, S.-T. (Shou-Tung), Teo, S.-H. (Soo-Hwang), Taib, N.A.M. (Nur Aishah Mohd), Har Yip, C. (Cheng), Fuang Ho, G. (Gwo), Matsuo, K. (Keitaro), Ito, H. (Hidemi), Iwata, H. (Hisato), Tajima, K. (Kazuo), Kang, D. (Daehee), Choi, J.-Y. (Ji-Yeob), Park, S.K. (Sue), Yoo, K-Y. (Keun-Young), Maishman, T. (Tom), Tapper, W. (William), Dunning, A.M. (Alison), Shah, M. (Mitul), Luben, R.N. (Robert), Brown, J. (Judith), Chuen Khor, C. (Chiea), Eccles, D. (Diana), Nevanlinna, H. (Heli), Easton, D.F. (Douglas), Humphreys, M.K. (Manjeet), Liu, J. (Jianjun), Hall, P. (Per), Czene, K. (Kamila), Li, J. (Jingmei), Lindström, L.S. (Linda), Foo, J.N. (Jia), Rafiq, M. (Meena), Schmidt, M.K. (Marjanka), Pharoah, P.D.P. (Paul), Michailidou, K. (Kyriaki), Dennis, J. (Joe), Bolla, M.K. (Manjeet), Wang, Q. (Qing), Veer, L.J. (Laura) van 't, Cornelissen, S. (Sten), Rutgers, E.J.T. (Emiel), Southey, M.C. (Melissa), Apicella, C. (Carmel), Dite, G.S. (Gillian), Hopper, J.L. (John), Fasching, P.A. (Peter), Haeberle, L. (Lothar), Ekici, A.B. (Arif), Beckmann, M.W. (Matthias), Blomqvist, C. (Carl), Muranen, T.A. (Taru), Aittomäki, K. (Kristiina), Lindblom, A. (Annika), Margolin, S. (Sara), Mannermaa, A. (Arto), Kosma, V-M. (Veli-Matti), Hartikainen, J. (Jaana), Kataja, V. (Vesa), Chenevix-Trench, G. (Georgia), Investigators, K. (Kconfab), Phillips, K.-A. (Kelly-Anne), McLachlan, S.-A. (Sue-Anne), Lambrechts, D. (Diether), Thienpont, B. (Bernard), Smeets, A. (Ann), Wildiers, H. (Hans), Chang-Claude, J. (Jenny), Flesch-Janys, D. (Dieter), Seibold, P. (Petra), Rudolph, A. (Anja), Giles, G.G. (Graham), Baglietto, L. (Laura), Severi, G. (Gianluca), Haiman, C.A. (Christopher), Henderson, B.E. (Brian), Schumacher, F.R. (Fredrick), Le Marchand, L. (Loic), Kristensen, V. (Vessela), Alnæs, G.G. (Grethe), Borresen-Dale, A.-L. (Anne-Lise), Nord, S. (Silje), Winqvist, R. (Robert), Pykäs, K. (Katri), Jukkola-Vuorinen, A. (Arja), Grip, M. (Mervi), Andrulis, I.L. (Irene), Knight, J.A. (Julia), Glendon, G. (Gord), Tchatchou, S. (Sandrine), Devilee, P. (Peter), Tollenaar, R.A.E.M. (Rob), Seynaeve, C.M. (Caroline), Hooning, M.J. (Maartje), Kriege, M. (Mieke), Hollestelle, A. (Antoinette), Ouweland, A.M.W. (Ans) van den, Li, Y. (Yi), Hamann, U. (Ute), Torres, D. (Diana), Ulmer, H.U. (Hans), Rüdiger, T. (Thomas), Shen, C-Y. (Chen-Yang), Hsiung, C.-N. (Chia-Ni), Wu, P.-E. (Pei-Ei), Chen, S.-T. (Shou-Tung), Teo, S.-H. (Soo-Hwang), Taib, N.A.M. (Nur Aishah Mohd), Har Yip, C. (Cheng), Fuang Ho, G. (Gwo), Matsuo, K. (Keitaro), Ito, H. (Hidemi), Iwata, H. (Hisato), Tajima, K. (Kazuo), Kang, D. (Daehee), Choi, J.-Y. (Ji-Yeob), Park, S.K. (Sue), Yoo, K-Y. (Keun-Young), Maishman, T. (Tom), Tapper, W. (William), Dunning, A.M. (Alison), Shah, M. (Mitul), Luben, R.N. (Robert), Brown, J. (Judith), Chuen Khor, C. (Chiea), Eccles, D. (Diana), Nevanlinna, H. (Heli), Easton, D.F. (Douglas), Humphreys, M.K. (Manjeet), Liu, J. (Jianjun), Hall, P. (Per), and Czene, K. (Kamila)
- Abstract
Large population-based registry studies have shown that breast cancer prognosis is inherited. Here we analyse single-nucleotide polymorphisms (SNPs) of genes implicated in human immunology and inflammation as candidates for prognostic markers of breast cancer survival involving 1,804 oestrogen receptor (ER)-negative patients treated with chemotherapy (279 events) from 14 European studies in a prior large-scale genotyping experiment, which is part of the Collaborative Oncological Gene-environment Study (COGS) initiative. We carry out replication using Asian COGS samples (n=522, 53 events) and the Prospective Study of Outcomes in Sporadic versus Hereditary breast cancer (POSH) study (n=315, 108 events). Rs4458204-A near CCL20 (2q36.3) is found to be associated with breast cancer-specific death at a genome-wide significant level (n=2,641, 440 events, combined allelic hazard ratio (HR)=1.81 (1.49-2.19); P for trend=1.90 × 10 â ̂'9). Such survival-associated variants can represent ideal targets for tailored therapeutics, and may also enhance our current prognostic prediction capabilities.
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- 2014
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- View/download PDF
9. Molecular Biomarkers in Prediction of High-Grade Transformation and Outcome in Patients with Follicular Lymphoma: A Comprehensive Systemic Review.
- Author
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Enemark, Marie Hairing, Hemmingsen, Jonas Klejs, Jensen, Maja Lund, Kridel, Robert, and Ludvigsen, Maja
- Subjects
FOLLICULAR lymphoma ,TUMOR markers ,B cells ,PROGNOSIS ,DISEASE relapse - Abstract
Follicular lymphoma (FL) is the most prevalent indolent B-cell lymphoma entity, often characterized by the t(14;18) BCL2-IGH translocation. The malignancy represents a clinically and biologically highly heterogeneous disease. Most patients have favorable prognoses; however, despite therapeutic advancements, the disease remains incurable, with recurrent relapses or early disease progression. Moreover, transformation to an aggressive histology, most often diffuse large-B-cell lymphoma, remains a critical event in the disease course, which is associated with poor outcomes. Understanding the individual patient's risk of transformation remains challenging, which has motivated much research on novel biomarkers within the past four decades. This review systematically assessed the research on molecular biomarkers in FL transformation and outcome. Following the PRISMA guidelines for systemic reviews, the PubMed database was searched for English articles published from January 1984 through September 2024, yielding 6769 results. The identified publications were carefully screened and reviewed, of which 283 original papers met the inclusion criteria. The included studies focused on investigating molecular biomarkers as predictors of transformation or as prognostic markers of time-related endpoints (survival, progression, etc.). The effects of each biomarker were categorized based on their impact on prognosis or risk of transformation as none, favorable, or inferior. The biomarkers included genetic abnormalities, gene expression, microRNAs, markers of B cells/FL tumor cells, markers of the tumor microenvironment, and soluble biomarkers. This comprehensive review provides an overview of the research conducted in the past four decades, underscoring the persistent challenge in risk anticipation of FL patients. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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10. Regulation of Skeletal Development and Maintenance by Runx2 and Sp7.
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Komori, Toshihisa
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TRANSCRIPTION factors ,EXTRACELLULAR matrix proteins ,FIBROBLAST growth factors ,BONE growth ,OSTEOGENESIS imperfecta ,OSTEOCALCIN - Abstract
Runx2 (runt related transcription factor 2) and Sp7 (Sp7 transcription factor 7) are crucial transcription factors for bone development. The cotranscription factor Cbfb (core binding factor beta), which enhances the DNA-binding capacity of Runx2 and stabilizes the Runx2 protein, is necessary for bone development. Runx2 is essential for chondrocyte maturation, and Sp7 is partly involved. Runx2 induces the commitment of multipotent mesenchymal cells to osteoblast lineage cells and enhances the proliferation of osteoprogenitors. Reciprocal regulation between Runx2 and the Hedgehog, fibroblast growth factor (Fgf), Wnt, and parathyroid hormone-like hormone (Pthlh) signaling pathways and Dlx5 (distal-less homeobox 5) plays an important role in these processes. The induction of Fgfr2 (Fgf receptor 2) and Fgfr3 expression by Runx2 is important for the proliferation of osteoblast lineage cells. Runx2 induces Sp7 expression, and Runx2
+ osteoprogenitors become Runx2+ Sp7+ preosteoblasts. Sp7 induces the differentiation of preosteoblasts into osteoblasts without enhancing their proliferation. In osteoblasts, Runx2 is required for bone formation by inducing the expression of major bone matrix protein genes, including Col1a1 (collagen type I alpha 1), Col1a2, Spp1 (secreted phosphoprotein 1), Ibsp (integrin binding sialoprotein), and Bglap (bone gamma carboxyglutamate protein)/Bglap2. Bglap/Bglap2 (osteocalcin) regulates the alignment of apatite crystals parallel to collagen fibrils but does not function as a hormone that regulates glucose metabolism, testosterone synthesis, and muscle mass. Sp7 is also involved in Co1a1 expression and regulates osteoblast/osteocyte process formation, which is necessary for the survival of osteocytes and the prevention of cortical porosity. SP7 mutations cause osteogenesis imperfecta in rare cases. Runx2 is an important pathogenic factor, while Runx1, Runx3, and Cbfb are protective factors in osteoarthritis development. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
11. Untangling the Uncertain Role of Overactivation of the Renin–Angiotensin–Aldosterone System with the Aging Process Based on Sodium Wasting Human Models.
- Author
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Thimm, Chantelle and Adjaye, James
- Subjects
NICOTINAMIDE adenine dinucleotide phosphate ,PLURIPOTENT stem cells ,REGULATION of blood pressure ,DISEASE risk factors ,HISTONE deacetylase - Abstract
Every individual at some point encounters the progressive biological process of aging, which is considered one of the major risk factors for common diseases. The main drivers of aging are oxidative stress, senescence, and reactive oxygen species (ROS). The renin–angiotensin–aldosterone system (RAAS) includes several systematic processes for the regulation of blood pressure, which is caused by an imbalance of electrolytes. During activation of the RAAS, binding of angiotensin II (ANG II) to angiotensin II type 1 receptor (AGTR1) activates intracellular nicotinamide adenine dinucleotide phosphate (NADPH) oxidase to generate superoxide anions and promote uncoupling of endothelial nitric oxide (NO) synthase, which in turn decreases NO availability and increases ROS production. Promoting oxidative stress and DNA damage mediated by ANG II is tightly regulated. Individuals with sodium deficiency-associated diseases such as Gitelman syndrome (GS) and Bartter syndrome (BS) show downregulation of inflammation-related processes and have reduced oxidative stress and ROS. Additionally, the histone deacetylase sirtuin-1 (SIRT1) has a significant impact on the aging process, with reduced activity with age. However, GS/BS patients generally sustain higher levels of sirtuin-1 (SIRT1) activity than age-matched healthy individuals. SIRT1 expression in GS/BS patients tends to be higher than in healthy age-matched individuals; therefore, it can be assumed that there will be a trend towards healthy aging in these patients. In this review, we highlight the importance of the hallmarks of aging, inflammation, and the RAAS system in GS/BS patients and how this might impact healthy aging. We further propose future research directions for studying the etiology of GS/BS at the molecular level using patient-derived renal stem cells and induced pluripotent stem cells. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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12. Unraveling the Link of Altered TGFβ Signaling with Scoliotic Vertebral Malformations in Osteogenesis Imperfecta: A Comprehensive Review.
- Author
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Kaspiris, Angelos, Vasiliadis, Elias S., Tsalimas, Georgios, Melissaridou, Dimitra, Lianou, Ioanna, Panagopoulos, Fotios, Katzouraki, Galateia, Vavourakis, Michail, Kolovos, Ioannis, Savvidou, Olga D., Papadimitriou, Evangelia, and Pneumaticos, Spiros G.
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OSTEOGENESIS imperfecta ,LEG length inequality ,SPINE abnormalities ,SPONDYLOLYSIS ,BONE density ,BONE metabolism ,BONE remodeling - Abstract
Osteogenesis Imperfecta (OI) is a genetic disorder caused by mutations in genes responsible for collagen synthesis or polypeptides involved in the formation of collagen fibers. Its predominant skeletal complication is scoliosis, impacting 25 to 80% of OI patients. Vertebral deformities of the scoliotic curves in OI include a variety of malformations such as codfish, wedged-shaped vertebrae or platyspondyly, craniocervical junction abnormalities, and lumbosacral spondylolysis and spondylolisthesis. Although the precise pathophysiology of these spinal deformities remains unclear, anomalies in bone metabolism have been implicated in the progression of scoliotic curves. Bone Mineral Density (BMD) measurements have demonstrated a significant reduction in the Z-score, indicating osteoporosis and a correlation with the advancement of scoliosis. Factors such as increased mechanical strains, joint hypermobility, lower leg length discrepancy, pelvic obliquity, spinal ligament hypermobility, or vertebrae microfractures may also contribute to the severity of scoliosis. Histological vertebral analysis has confirmed that changes in trabecular microarchitecture, associated with inadequate bone turnover, indicate generalized bone metabolic defects in OI. At the molecular level, the upregulation of Transforming Growth factor-β (TGFβ) signaling in OI can lead to disturbed bone turnover and changes in muscle mass and strength. Understanding the relationship between spinal clinical features and molecular pathways could unveil TGFβ -related molecular targets, paving the way for novel therapeutic approaches in OI. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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13. A Systematic Review of Extracellular Matrix-Related Alterations in Parkinson's Disease.
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Chapman, Mary Ann and Sorg, Barbara A.
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PARKINSON'S disease ,FOCAL adhesions ,CELL anatomy ,EXTRACELLULAR matrix ,CELL adhesion - Abstract
The role of the extracellular matrix (ECM) in Parkinson's disease (PD) is not well understood, even though it is critical for neuronal structure and signaling. This systematic review identified the top deregulated ECM-related pathways in studies that used gene set enrichment analyses (GSEA) to document transcriptomic, proteomic, or genomic alterations in PD. PubMed and Google scholar were searched for transcriptomics, proteomics, or genomics studies that employed GSEA on data from PD tissues or cells and reported ECM-related pathways among the top-10 most enriched versus controls. Twenty-seven studies were included, two of which used multiple omics analyses. Transcriptomics and proteomics studies were conducted on a variety of tissue and cell types. Of the 17 transcriptomics studies (16 data sets), 13 identified one or more adhesion pathways in the top-10 deregulated gene sets or pathways, primarily related to cell adhesion and focal adhesion. Among the 8 proteomics studies, 5 identified altered overarching ECM gene sets or pathways among the top 10. Among the 4 genomics studies, 3 identified focal adhesion pathways among the top 10. The findings summarized here suggest that ECM organization/structure and cell adhesion (particularly focal adhesion) are altered in PD and should be the focus of future studies. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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14. Unveiling the Future of Oncology and Precision Medicine through Data Science.
- Author
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Zaravinos, Apostolos
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INDIVIDUALIZED medicine ,COMPUTATIONAL biology ,DATA science ,PRECISION farming ,HORMONE receptor positive breast cancer ,BREAST ,CANCER genetics ,ONCOLOGY - Abstract
This document is an editorial from the International Journal of Molecular Sciences titled "Unveiling the Future of Oncology and Precision Medicine through Data Science." It discusses the use of data science in cancer genomics and precision medicine, highlighting its potential to improve understanding and treatment of cancer. The editorial presents a collection of seven studies that demonstrate the synergy between data science and oncological research, showcasing new findings and the path towards personalized cancer care. The studies cover various topics, including precision medicine in gynecological malignancies, genetic associations in hepatocellular carcinoma, systems biology approach to kidney cancer, interplay between androgen receptor and estrogen receptor in breast cancer, co-deregulated genes in lung cancer, and gene regulatory networks in the epithelial-mesenchymal transition in cancer. The editorial concludes by emphasizing the transformative potential of data science in cancer genomics and precision medicine. [Extracted from the article]
- Published
- 2024
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15. Protein Quality Control of NKCC2 in Bartter Syndrome and Blood Pressure Regulation.
- Author
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Laghmani, Kamel
- Subjects
REGULATION of blood pressure ,QUALITY control ,MEMBRANE proteins ,SYNDROMES ,CELL membranes ,PROTEOLYSIS ,BLOOD pressure - Abstract
Mutations in NKCC2 generate antenatal Bartter syndrome type 1 (type 1 BS), a life-threatening salt-losing nephropathy characterized by arterial hypotension, as well as electrolyte abnormalities. In contrast to the genetic inactivation of NKCC2, inappropriate increased NKCC2 activity has been associated with salt-sensitive hypertension. Given the importance of NKCC2 in salt-sensitive hypertension and the pathophysiology of prenatal BS, studying the molecular regulation of this Na-K-2Cl cotransporter has attracted great interest. Therefore, several studies have addressed various aspects of NKCC2 regulation, such as phosphorylation and post-Golgi trafficking. However, the regulation of this cotransporter at the pre-Golgi level remained unknown for years. Similar to several transmembrane proteins, export from the ER appears to be the rate-limiting step in the cotransporter's maturation and trafficking to the plasma membrane. The most compelling evidence comes from patients with type 5 BS, the most severe form of prenatal BS, in whom NKCC2 is not detectable in the apical membrane of thick ascending limb (TAL) cells due to ER retention and ER-associated degradation (ERAD) mechanisms. In addition, type 1 BS is one of the diseases linked to ERAD pathways. In recent years, several molecular determinants of NKCC2 export from the ER and protein quality control have been identified. The aim of this review is therefore to summarize recent data regarding the protein quality control of NKCC2 and to discuss their potential implications in BS and blood pressure regulation. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
16. Emerging and Clinically Accepted Biomarkers for Hepatocellular Carcinoma.
- Author
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Fares, Sami, Wehrle, Chase J., Hong, Hanna, Sun, Keyue, Jiao, Chunbao, Zhang, Mingyi, Gross, Abby, Allkushi, Erlind, Uysal, Melis, Kamath, Suneel, Ma, Wen Wee, Modaresi Esfeh, Jamak, Linganna, Maureen Whitsett, Khalil, Mazhar, Pita, Alejandro, Kim, Jaekeun, Walsh, R. Matthew, Miller, Charles, Hashimoto, Koji, and Schlegel, Andrea
- Subjects
EDUCATION of physicians ,PUBLIC health surveillance ,BLOOD testing ,GENOMICS ,GLYCOSYLATION ,TUMOR markers ,METASTASIS ,NUCLEIC acids ,EXTRACELLULAR space ,METABOLOMICS ,HEPATOCELLULAR carcinoma ,SENSITIVITY & specificity (Statistics) ,LIVER transplantation - Abstract
Simple Summary: This review article serves to update physicians on what biomarker tests are available for the surveillance and follow up of hepatocellular carcinoma. Our goal is to provide an update on newly arising tests and their diagnostic accuracy when compared to the standard protocol. Findings from this article hope to promote further investigation into high utility tests and continue the pursuit of clinical utility for emerging biomarkers such as circulating tumor DNA. Hepatocellular carcinoma (HCC) is the third leading cause of cancer-related death and the sixth most diagnosed malignancy worldwide. Serum alpha-fetoprotein (AFP) is the traditional, ubiquitous biomarker for HCC. However, there has been an increasing call for the use of multiple biomarkers to optimize care for these patients. AFP, AFP-L3, and prothrombin induced by vitamin K absence II (DCP) have described clinical utility for HCC, but unfortunately, they also have well established and significant limitations. Circulating tumor DNA (ctDNA), genomic glycosylation, and even totally non-invasive salivary metabolomics and/or micro-RNAS demonstrate great promise for early detection and long-term surveillance, but still require large-scale prospective validation to definitively validate their clinical validity. This review aims to provide an update on clinically available and emerging biomarkers for HCC, focusing on their respective clinical strengths and weaknesses. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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17. Biomimetic Scaffolds—A Novel Approach to Three Dimensional Cell Culture Techniques for Potential Implementation in Tissue Engineering.
- Author
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Górnicki, Tomasz, Lambrinow, Jakub, Golkar-Narenji, Afsaneh, Data, Krzysztof, Domagała, Dominika, Niebora, Julia, Farzaneh, Maryam, Mozdziak, Paul, Zabel, Maciej, Antosik, Paweł, Bukowska, Dorota, Ratajczak, Kornel, Podhorska-Okołów, Marzenna, Dzięgiel, Piotr, and Kempisty, Bartosz
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TISSUE scaffolds ,BIOMIMETIC materials ,BIOPRINTING ,TISSUE engineering ,CELL culture ,SKIN regeneration ,MUSCULOSKELETAL system ,INDIVIDUALIZED medicine - Abstract
Biomimetic scaffolds imitate native tissue and can take a multidimensional form. They are biocompatible and can influence cellular metabolism, making them attractive bioengineering platforms. The use of biomimetic scaffolds adds complexity to traditional cell cultivation methods. The most commonly used technique involves cultivating cells on a flat surface in a two-dimensional format due to its simplicity. A three-dimensional (3D) format can provide a microenvironment for surrounding cells. There are two main techniques for obtaining 3D structures based on the presence of scaffolding. Scaffold-free techniques consist of spheroid technologies. Meanwhile, scaffold techniques contain organoids and all constructs that use various types of scaffolds, ranging from decellularized extracellular matrix (dECM) through hydrogels that are one of the most extensively studied forms of potential scaffolds for 3D culture up to 4D bioprinted biomaterials. 3D bioprinting is one of the most important techniques used to create biomimetic scaffolds. The versatility of this technique allows the use of many different types of inks, mainly hydrogels, as well as cells and inorganic substances. Increasing amounts of data provide evidence of vast potential of biomimetic scaffolds usage in tissue engineering and personalized medicine, with the main area of potential application being the regeneration of skin and musculoskeletal systems. Recent papers also indicate increasing amounts of in vivo tests of products based on biomimetic scaffolds, which further strengthen the importance of this branch of tissue engineering and emphasize the need for extensive research to provide safe for humansbiomimetic tissues and organs. In this review article, we provide a review of the recent advancements in the field of biomimetic scaffolds preceded by an overview of cell culture technologies that led to the development of biomimetic scaffold techniques as the most complex type of cell culture. [ABSTRACT FROM AUTHOR]
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- 2024
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18. Xylosyltransferase-Deficiency in Human Dermal Fibroblasts Induces Compensatory Myofibroblast Differentiation and Long-Term ECM Reduction.
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Kleine, Anika, Kühle, Matthias, Ly, Thanh-Diep, Schmidt, Vanessa, Faust-Hinse, Isabel, Knabbe, Cornelius, and Fischer, Bastian
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FIBROBLASTS ,MULTIENZYME complexes ,EXTRACELLULAR matrix ,CELLULAR aging ,OXIDATIVE stress - Abstract
Desbuquois dysplasia type 2 (DBQD2) and spondylo-ocular syndrome (SOS) are autosomal recessive disorders affecting the extracellular matrix (ECM) and categorized as glycosaminoglycan (GAG) linkeropathies. Linkeropathies result from mutations within glycosyltransferases involved in the synthesis of the tetrasaccharide linker, a linker between the core protein of proteoglycan (PG) and GAG. DBQD2 and SOS are caused by the isolated mutations of the xylosyltransferase (XT) isoforms. In this work, we successfully generated XYLT1- as well as XYLT2-deficient GAG linkeropathy model systems in human dermal fibroblasts using a ribonucleoprotein-based CRISPR/Cas9-system. Furthermore, it was possible to generate a complete XYLT-knockdown. Short- and long-term XT activity deficiency led to the mutual reduction in all linker transferase-encoding genes, suggesting a potential multienzyme complex with mutual regulation. Fibroblasts compensated for ECM misregulation initially by overexpressing ECM through the TGFβ1 signaling pathway, akin to myofibroblast differentiation patterns. The long-term reduction in one XT isoform induced a stress response, reducing ECM components. The isolated XYLT1-knockout exhibited α-smooth muscle actin overexpression, possibly partially compensated by unaltered XT-II activity. XYLT2-knockout leads to the reduction in both XT isoforms and a strong stress response with indications of oxidative stress, induced senescence and apoptotic cells. In conclusion, introducing XYLT-deficiency revealed temporal and isoform-specific regulatory differences. [ABSTRACT FROM AUTHOR]
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- 2024
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19. An Update on Current Therapeutic Options in IgA Nephropathy.
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Lim, Regina Shaoying, Yeo, See Cheng, Barratt, Jonathan, and Rizk, Dana V.
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IGA glomerulonephritis ,KIDNEY failure ,CHRONIC kidney failure ,KIDNEY glomerulus diseases ,KIDNEY diseases ,DRUG approval - Abstract
Immunoglobulin A nephropathy (IgAN) remains the leading cause of primary glomerular disease worldwide. Outcomes are poor with high rates of progressive chronic kidney disease and kidney failure, which contributes to global healthcare costs. Although this disease entity has been described, there were no disease-specific treatments until recently, with the current standard of care focusing on optimal supportive measures including lifestyle modifications and optimization of the renin-angiotensin-aldosterone blockade. However, with significant advances in the understanding of the pathogenesis of IgAN in the past decade, and the acceptance of surrogate outcomes for accelerated drug approval, there have been many new investigational agents tested to target this disease. As these agents become available, we envision a multi-pronged treatment strategy that simultaneously targets the consequences of ongoing nephron loss, stopping any glomerular inflammation, inhibiting pro-fibrotic signals in the glomerulus and tubulo-interstitium, and inhibiting the production of pathogenic IgA molecules. This review is an update on a previous review published in 2021, and we aim to summarize the developments and updates in therapeutic strategies in IgAN and highlight the promising discoveries that are likely to add to our armamentarium. [ABSTRACT FROM AUTHOR]
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- 2024
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20. Understanding Hypertriglyceridemia: Integrating Genetic Insights.
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Alves, Mara, Laranjeira, Francisco, and Correia-da-Silva, Georgina
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HYPERTRIGLYCERIDEMIA ,GENETIC transcription ,TRIGLYCERIDES ,GENETIC translation ,GENETIC variation ,GENETIC testing - Abstract
Hypertriglyceridemia is an exceptionally complex metabolic disorder characterized by elevated plasma triglycerides associated with an increased risk of acute pancreatitis and cardiovascular diseases such as coronary artery disease. Its phenotype expression is widely heterogeneous and heavily influenced by conditions as obesity, alcohol consumption, or metabolic syndromes. Looking into the genetic underpinnings of hypertriglyceridemia, this review focuses on the genetic variants in LPL, APOA5, APOC2, GPIHBP1 and LMF1 triglyceride-regulating genes reportedly associated with abnormal genetic transcription and the translation of proteins participating in triglyceride-rich lipoprotein metabolism. Hypertriglyceridemia resulting from such genetic abnormalities can be categorized as monogenic or polygenic. Monogenic hypertriglyceridemia, also known as familial chylomicronemia syndrome, is caused by homozygous or compound heterozygous pathogenic variants in the five canonical genes. Polygenic hypertriglyceridemia, also known as multifactorial chylomicronemia syndrome in extreme cases of hypertriglyceridemia, is caused by heterozygous pathogenic genetic variants with variable penetrance affecting the canonical genes, and a set of common non-pathogenic genetic variants (polymorphisms, using the former nomenclature) with well-established association with elevated triglyceride levels. We further address recent progress in triglyceride-lowering treatments. Understanding the genetic basis of hypertriglyceridemia opens new translational opportunities in the scope of genetic screening and the development of novel therapies. [ABSTRACT FROM AUTHOR]
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- 2024
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21. Identification of 13 Novel Loci in a Genome-Wide Association Study on Taiwanese with Hepatocellular Carcinoma.
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Liu, Ting-Yuan, Liao, Chi-Chou, Chang, Ya-Sian, Chen, Yu-Chia, Chen, Hong-Da, Lai, I-Lu, Peng, Cheng-Yuan, Chung, Chin-Chun, Chou, Yu-Pao, Tsai, Fuu-Jen, Jeng, Long-Bin, and Chang, Jan-Gowth
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GENOME-wide association studies ,HEPATOCELLULAR carcinoma ,DISEASE risk factors ,LOCUS (Genetics) ,MAJOR histocompatibility complex ,SHORT tandem repeat analysis ,IDENTIFICATION - Abstract
Liver cancer is caused by complex interactions among genetic factors, viral infection, alcohol abuse, and metabolic diseases. We conducted a genome-wide association study and polygenic risk score (PRS) model in Taiwan, employing a nonspecific etiology approach, to identify genetic risk factors for hepatocellular carcinoma (HCC). Our analysis of 2836 HCC cases and 134,549 controls revealed 13 novel associated loci such as the FAM66C gene, noncoding genes, liver-fibrosis-related genes, metabolism-related genes, and HCC-related pathway genes. We incorporated the results from the UK Biobank and Japanese database into our study for meta-analysis to validate our findings. We also identified specific subtypes of the major histocompatibility complex that influence both viral infection and HCC progression. Using this data, we developed a PRS to predict HCC risk in the general population, patients with HCC, and HCC-affected families. The PRS demonstrated higher risk scores in families with multiple HCCs and other cancer cases. This study presents a novel approach to HCC risk analysis, identifies seven new genes associated with HCC development, and introduces a reproducible PRS model for risk assessment. [ABSTRACT FROM AUTHOR]
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- 2023
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22. A PRoliferation-Inducing Ligand (APRIL) in the Pathogenesis of Immunoglobulin A Nephropathy: A Review of the Evidence.
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Mathur, Mohit, Chan, Tak Mao, Oh, Kook-Hwan, Kooienga, Laura, Zhuo, Min, Pinto, Cibele S., and Chacko, Bobby
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IGA glomerulonephritis ,CHRONIC kidney failure ,TUMOR necrosis factors ,NEPHRITIS ,B cells ,PLASMA cells ,IMMUNOGLOBULIN class switching - Abstract
A PRoliferation-Inducing Ligand (APRIL), the thirteenth member of the tumor necrosis factor superfamily, plays a key role in the regulation of activated B cells, the survival of long-lived plasma cells, and immunoglobulin (Ig) isotype class switching. Several lines of evidence have implicated APRIL in the pathogenesis of IgA nephropathy (IgAN). Globally, IgAN is the most common primary glomerulonephritis, and it can progress to end-stage kidney disease; yet, disease-modifying treatments for this condition have historically been lacking. The preliminary data in ongoing clinical trials indicate that APRIL inhibition can reduce proteinuria and slow the rate of kidney disease progression by acting at an upstream level in IgAN pathogenesis. In this review, we examine what is known about the physiologic roles of APRIL and evaluate the experimental and epidemiological evidence describing how these normal biologic processes are thought to be subverted in IgAN. The weight of the preclinical, clinical, and genetic data supporting a key role for APRIL in IgAN has galvanized pharmacologic research, and several anti-APRIL drug candidates have now entered clinical development for IgAN. Herein, we present an overview of the clinical results to date. Finally, we explore where more research and evidence are needed to transform potential therapies into clinical benefits for patients with IgAN. [ABSTRACT FROM AUTHOR]
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- 2023
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23. Applications of Machine Learning to Diagnosis of Parkinson's Disease.
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Lai, Hong, Li, Xu-Ying, Xu, Fanxi, Zhu, Junge, Li, Xian, Song, Yang, Wang, Xianlin, Wang, Zhanjun, and Wang, Chaodong
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PARKINSON'S disease ,MACHINE learning ,SUPPORT vector machines ,RECEIVER operating characteristic curves ,SMELL disorders ,K-nearest neighbor classification - Abstract
Background: Accurate diagnosis of Parkinson's disease (PD) is challenging due to its diverse manifestations. Machine learning (ML) algorithms can improve diagnostic precision, but their generalizability across medical centers in China is underexplored. Objective: To assess the accuracy of an ML algorithm for PD diagnosis, trained and tested on data from different medical centers in China. Methods: A total of 1656 participants were included, with 1028 from Beijing (training set) and 628 from Fuzhou (external validation set). Models were trained using the least absolute shrinkage and selection operator–logistic regression (LASSO-LR), decision tree (DT), random forest (RF), eXtreme gradient boosting (XGboost), support vector machine (SVM), and k-nearest neighbor (KNN) techniques. Hyperparameters were optimized using five-fold cross-validation and grid search techniques. Model performance was evaluated using the area under the curve (AUC) of the receiver operating characteristic (ROC) curve, accuracy, sensitivity (recall), specificity, precision, and F1 score. Variable importance was assessed for all models. Results: SVM demonstrated the best differentiation between healthy controls (HCs) and PD patients (AUC: 0.928, 95% CI: 0.908–0.947; accuracy: 0.844, 95% CI: 0.814–0.871; sensitivity: 0.826, 95% CI: 0.786–0.866; specificity: 0.861, 95% CI: 0.820–0.898; precision: 0.849, 95% CI: 0.807–0.891; F1 score: 0.837, 95% CI: 0.803–0.868) in the validation set. Constipation, olfactory decline, and daytime somnolence significantly influenced predictability. Conclusion: We identified multiple pivotal variables and SVM as a precise and clinician-friendly ML algorithm for prediction of PD in Chinese patients. [ABSTRACT FROM AUTHOR]
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- 2023
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24. Insight and Recommendations for Fragile X-Premutation-Associated Conditions from the Fifth International Conference on FMR1 Premutation.
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Tassone, Flora, Protic, Dragana, Allen, Emily Graves, Archibald, Alison D., Baud, Anna, Brown, Ted W., Budimirovic, Dejan B., Cohen, Jonathan, Dufour, Brett, Eiges, Rachel, Elvassore, Nicola, Gabis, Lidia V., Grudzien, Samantha J., Hall, Deborah A., Hessl, David, Hogan, Abigail, Hunter, Jessica Ezzell, Jin, Peng, Jiraanont, Poonnada, and Klusek, Jessica
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TRINUCLEOTIDE repeats ,CONFERENCES & conventions ,GENETIC counseling ,NEUROBEHAVIORAL disorders ,PHENOTYPES - Abstract
The premutation of the fragile X messenger ribonucleoprotein 1 (FMR1) gene is characterized by an expansion of the CGG trinucleotide repeats (55 to 200 CGGs) in the 5' untranslated region and increased levels of FMR1 mRNA. Molecular mechanisms leading to fragile X-premutation-associated conditions (FXPAC) include cotranscriptional R-loop formations, FMR1 mRNA toxicity through both RNA gelation into nuclear foci and sequestration of various CGG-repeat-binding proteins, and the repeat-associated non-AUG (RAN)-initiated translation of potentially toxic proteins. Such molecular mechanisms contribute to subsequent consequences, including mitochondrial dysfunction and neuronal death. Clinically, premutation carriers may exhibit a wide range of symptoms and phenotypes. Any of the problems associated with the premutation can appropriately be called FXPAC. Fragile X-associated tremor/ataxia syndrome (FXTAS), fragile X-associated primary ovarian insufficiency (FXPOI), and fragile X-associated neuropsychiatric disorders (FXAND) can fall under FXPAC. Understanding the molecular and clinical aspects of the premutation of the FMR1 gene is crucial for the accurate diagnosis, genetic counseling, and appropriate management of affected individuals and families. This paper summarizes all the known problems associated with the premutation and documents the presentations and discussions that occurred at the International Premutation Conference, which took place in New Zealand in 2023. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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25. Hypothalamus, Neuropeptides and Socioemotional Behavior.
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Caria, Andrea
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HYPOTHALAMUS ,NEUROPEPTIDES ,BEHAVIORAL neuroscience ,SOLITARY nucleus ,PREOPTIC area ,INTERGROUP communication ,DEFENSIVENESS (Psychology) - Abstract
10.1038/s41586-022-05057-6 15 Anpilov S., Shemesh Y., Eren N., Harony-Nicolas H., Benjamin A., Dine J., Oliveira V.E.M., Forkosh O., Karamihalev S., Huttl R.E. Wireless Optogenetic Stimulation of Oxytocin Neurons in a Semi-natural Setup Dynamically Elevates Both Pro-social and Agonistic Behaviors. Linking OXT and parental behavior, Cataldo and colleagues [[28]] aimed to extend our current knowledge of the interactions between oxytocin receptor gene (OXTR) polymorphism, parental attachment, and socioemotional responses. A large body of evidence from old stimulation and lesion studies on the hypothalamus in animals and humans demonstrates that this subcortical area significantly affects socioemotional behavior [[1], [3]]; more recent optogenetic studies extended this evidence by showing that the stimulation of distinct hypothalamic nuclei elicits defensive and aggressive responses [[5], [7], [9], [11]]. In addition to the well-established relationship between oxytocin and social behavior, phoenixin, a novel peptide that has been associated with reproductive functions in both the hypothalamus and pituitary [[31]], has recently attracted attention. [Extracted from the article]
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- 2023
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26. A Scientometric Review of Infant Cry and Caregiver Responsiveness: Literature Trends and Research Gaps over 60 Years of Developmental Study.
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Carollo, Alessandro, Montefalcone, Pietro, Bornstein, Marc H., and Esposito, Gianluca
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CAREGIVER attitudes ,INFANT development ,CRYING ,SYSTEMATIC reviews ,BIBLIOMETRICS ,MOTHER-infant relationship ,PARENTING ,PSYCHOLOGY of caregivers ,INFANT psychology ,THEMATIC analysis ,DATA analysis software ,CHILDREN - Abstract
Infant cry is an adaptive signal of distress that elicits timely and mostly appropriate caring behaviors. Caregivers are typically able to decode the meaning of the cry and respond appropriately, but maladaptive caregiver responses are common and, in the worst cases, can lead to harmful events. To tackle the importance of studying cry patterns and caregivers' responses, this review aims to identify key documents and thematic trends in the literature as well as existing research gaps. To do so, we conducted a scientometric review of 723 documents downloaded from Scopus and performed a document co-citation analysis. The most impactful publication was authored by Barr in 1990, which describes typical developmental patterns of infant cry. Six major research thematic clusters emerged from the analysis of the literature. Clusters were renamed "Neonatal Pain Analyzer" (average year of publication = 2002), "Abusive Head Trauma" (average year of publication = 2007), "Oxytocin" (average year of publication = 2009), "Antecedents of Maternal Sensitivity" (average year of publication = 2010), "Neurobiology of Parental Responses" (average year of publication = 2011), and "Hormonal Changes & Cry Responsiveness" (average year of publication = 2016). Research clusters are discussed on the basis of a qualitative inspection of the manuscripts. Current trends in research focus on the neurobiology of caregiver responses and the identification of factors promoting maternal sensitivity. Recent studies have also developed evidence-based strategies for calming crying babies and preventing caregivers' maladaptive responses. From the clusters, two topics conspicuously call for future research: fathers' responsiveness to infant cry and the impact of caregiver relationship quality on cry responsiveness. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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27. Heterogenous Genetic, Clinical, and Imaging Features in Patients with Neuronal Intranuclear Inclusion Disease Carrying NOTCH2NLC Repeat Expansion.
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Fitrah, Yusran Ady, Higuchi, Yo, Hara, Norikazu, Tokutake, Takayoshi, Kanazawa, Masato, Sanpei, Kazuhiro, Taneda, Tomone, Nakajima, Akihiko, Koide, Shin, Tsuboguchi, Shintaro, Watanabe, Midori, Fukumoto, Junki, Ando, Shoichiro, Sato, Tomoe, Iwafuchi, Yohei, Sato, Aki, Hayashi, Hideki, Ishiguro, Takanobu, Takeda, Hayato, and Takahashi, Toshiaki
- Subjects
TRINUCLEOTIDE repeats ,CEREBELLAR ataxia ,SPINOCEREBELLAR ataxia ,JAPANESE people ,NEURODEGENERATION ,DIAGNOSTIC imaging - Abstract
Neuronal intranuclear inclusion disease (NIID) is a neurodegenerative disorder that is caused by the abnormal expansion of non-coding trinucleotide GGC repeats in NOTCH2NLC. NIID is clinically characterized by a broad spectrum of clinical presentations. To date, the relationship between expanded repeat lengths and clinical phenotype in patients with NIID remains unclear. Thus, we aimed to clarify the genetic and clinical spectrum and their association in patients with NIID. For this purpose, we genetically analyzed Japanese patients with adult-onset NIID with characteristic clinical and neuroimaging findings. Trinucleotide repeat expansions of NOTCH2NLC were examined by repeat-primed and amplicon-length PCR. In addition, long-read sequencing was performed to determine repeat size and sequence. The expanded GGC repeats ranging from 94 to 361 in NOTCH2NLC were found in all 15 patients. Two patients carried biallelic repeat expansions. There were marked heterogenous clinical and imaging features in NIID patients. Patients presenting with cerebellar ataxia or urinary dysfunction had a significantly larger GGC repeat size than those without. This significant association disappeared when these parameters were compared with the total trinucleotide repeat number. ARWMC score was significantly higher in patients who had a non-glycine-type trinucleotide interruption within expanded poly-glycine motifs than in those with a pure poly-glycine expansion. These results suggested that the repeat length and sequence in NOTCH2NLC may partly modify some clinical and imaging features of NIID. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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28. Biallelic Variants in Seven Different Genes Associated with Clinically Suspected Bardet–Biedl Syndrome.
- Author
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Nawaz, Hamed, Mujahid, Khan, Sher Alam, Bibi, Farhana, Waqas, Ahmed, Bari, Abdul, Fardous, Khan, Niamatullah, Muhammad, Nazif, Khan, Amjad, Paracha, Sohail Aziz, Alam, Qamre, Kamal, Mohammad Azhar, Rafeeq, Misbahuddin M., Muhammad, Noor, Haq, Fayaz Ul, Khan, Shazia, Mahmood, Arif, Khan, Saadullah, and Umair, Muhammad
- Subjects
LAURENCE-Moon-Biedl syndrome ,RECURRENT neural networks ,NONSENSE mutation ,GENE families ,GENETIC variation ,MISSENSE mutation ,RECESSIVE genes - Abstract
Bardet–Biedl syndrome (BBS) is a rare clinically and genetically heterogeneous autosomal recessive multi-systemic disorder with 22 known genes. The primary clinical and diagnostic features include six different hallmarks, such as rod–cone dystrophy, learning difficulties, renal abnormalities, male hypogonadism, post-axial polydactyly, and obesity. Here, we report nine consanguineous families and a non-consanguineous family with several affected individuals presenting typical clinical features of BBS. In the present study, 10 BBS Pakistani families were subjected to whole exome sequencing (WES), which revealed novel/recurrent gene variants, including a homozygous nonsense mutation (c.94C>T; p.Gln32Ter) in the IFT27 (NM_006860.5) gene in family A, a homozygous nonsense mutation (c.160A>T; p.Lys54Ter) in the BBIP1 (NM_001195306.1) gene in family B, a homozygous nonsense variant (c.720C>A; p.Cys240Ter) in the WDPCP (NM_015910.7) in family C, a homozygous nonsense variant (c.505A>T; p.Lys169Ter) in the LZTFL1 (NM_020347.4) in family D, pathogenic homozygous 1 bp deletion (c.775delA; p.Thr259Leufs*21) in the MKKS/BBS5 (NM_170784.3) gene in family E, a pathogenic homozygous missense variant (c.1339G>A; p.Ala447Thr) in BBS1 (NM_024649.4) in families F and G, a pathogenic homozygous donor splice site variant (c.951+1G>A; p?) in BBS1 (NM_024649.4) in family H, a pathogenic bi-allelic nonsense variant in MKKS (NM_170784.3) (c.119C>G; p.Ser40*) in family I, and homozygous pathogenic frameshift variants (c.196delA; p.Arg66Glufs*12) in BBS5 (NM_152384.3) in family J. Our findings extend the mutation and phenotypic spectrum of four different types of ciliopathies causing BBS and also support the importance of these genes in the development of multi-systemic human genetic disorders. [ABSTRACT FROM AUTHOR]
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- 2023
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29. Lipidomic Profiling Reveals Biological Differences between Tumors of Self-Identified African Americans and Non-Hispanic Whites with Cancer.
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Boyd, April E., Grizzard, Pamela J., Hylton Rorie, Katherine, and Lima, Santiago
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LIPID metabolism ,METABOLOMICS ,PHENOMENOLOGICAL biology ,HISPANIC Americans ,APOPTOSIS ,CERAMIDES ,RESEARCH funding ,MASS spectrometry ,SURVIVAL analysis (Biometry) ,TUMORS ,HEALTH equity ,AFRICAN Americans ,SPHINGOLIPIDS - Abstract
Simple Summary: In human cancers, there are molecular changes associated with their development and responses to therapy. These include changes in molecules in their membranes called sphingolipids. Understanding why and how these lipids are altered may lead to new therapies targeting these changes. Unfortunately, as in other areas of modern cancer research, we lack an understanding of how these molecules are altered in tumors of Black Americans, or whether these changes have different impacts than in White Americans. As an important first step, we used mass spectrometry to profile the sphingolipids in tumors of the colon, liver, lung, head and neck, and endometrial cancers of Black and White Americans. We found that sphingolipids with known roles in how tumors grow and respond to therapy are differentially altered in Black and White Americans. These results strongly support further research designed to determine if Black Americans may benefit from therapies that target these alterations. In the US, the incidence and mortality of many cancers are disproportionately higher in African Americans (AA). Yet, AA remain poorly represented in molecular studies investigating the roles that biological factors might play in the development, progression, and outcomes of many cancers. Given that sphingolipids, key components of mammalian cellular membranes, have well-established roles in the etiology of cancer progression, malignancy, and responses to therapy, we conducted a robust mass spectrometry analysis of sphingolipids in normal adjacent uninvolved tissues and tumors of self-identified AA and non-Hispanic White (NHW) males with cancers of the lung, colon, liver, and head and neck and of self-identified AA and NHW females with endometrial cancer. In these cancers, AA have worse outcomes than NHW. The goal of our study was to identify biological candidates to be evaluated in future preclinical studies targeting race-specific alterations in the cancers of AA. We have identified that various sphingolipids are altered in race-specific patterns, but more importantly, the ratios of 24- to 16-carbon fatty acyl chain-length ceramides and glucosylceramides are higher in the tumors of AA. As there is evidence that ceramides with 24-carbon fatty acid chain length promote cellular survival and proliferation, whereas 16-carbon chain length promote apoptosis, these results provide important support for future studies tailored to evaluate the potential roles these differences may play in the outcomes of AA with cancer. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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30. Oxidants and Cardiorenal Vascular Remodeling—Insights from Rare Genetic Tubulopathies: Bartter's and Gitelman's Syndromes.
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Sgarabotto, Luca, Ravarotto, Verdiana, Stefanelli, Lucia Federica, Cacciapuoti, Martina, Davis, Paul A., Nalesso, Federico, and Calò, Lorenzo A.
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VASCULAR remodeling ,OXIDIZING agents ,MIRROR images ,SYNDROMES ,OXIDATIVE stress ,ANGIOTENSINS - Abstract
Two human genetic tubulopathies, Bartter's (BS) and Gitelman's (GS) syndromes, have normo/hypotension and absent cardiac remodeling despite their apparent angiotensin system (RAS) activation. This seeming contradiction has led to an extensive investigation of BSGS patients, the result of which is that BSGS represents a mirror image of hypertension. BSGS's unique set of properties has then permitted their use as a human model to probe and characterize RAS system pathways and oxidative stress in cardiovascular and renal remodeling and pathophysiology. This review details the results using GSBS patients that provide a deeper understanding of Ang II signaling and its associated oxidants/oxidative stress in humans. By providing a more complete and complex picture of cardiovascular and renal remodeling pathways and processes, studies of GSBS can inform the identification and selection of new targets and therapies to treat these and other oxidant-related disorders. [ABSTRACT FROM AUTHOR]
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- 2023
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31. The Role of Neural and Genetic Processes in Learning to Read and Specific Reading Disabilities: Implications for Instruction.
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Church, Jessica A., Grigorenko, Elena L., and Fletcher, Jack M.
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READING disability ,ORAL communication ,COGNITIVE processing of language ,RESEARCH methodology ,HERITABILITY - Abstract
To learn to read, the brain must repurpose neural systems for oral language and visual processing to mediate written language. We begin with a description of computational models for how alphabetic written language is processed. Next, we explain the roles of a dorsal sublexical system in the brain that relates print and speech, a ventral lexical system that develops the visual expertise for rapid orthographic processing at the word level, and the role of cognitive control networks that regulate attentional processes as children read. We then use studies of children, adult illiterates learning to read, and studies of poor readers involved in intervention, to demonstrate the plasticity of these neural networks in development and in relation to instruction. We provide a brief overview of the rapid increase in the field's understanding and technology for assessing genetic influence on reading. Family studies of twins have shown that reading skills are heritable, and molecular genetic studies have identified numerous regions of the genome that may harbor candidate genes for the heritability of reading. In selected families, reading impairment has been associated with major genetic effects, despite individual gene contributions across the broader population that appear to be small. Neural and genetic studies do not prescribe how children should be taught to read, but these studies have underscored the critical role of early intervention and ongoing support. These studies also have highlighted how structured instruction that facilitates access to the sublexical components of words is a critical part of training the brain to read. [ABSTRACT FROM AUTHOR]
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- 2023
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32. Genetic Evidence for Endolysosomal Dysfunction in Parkinson's Disease: A Critical Overview.
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Yahya, Vidal, Di Fonzo, Alessio, and Monfrini, Edoardo
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PARKINSON'S disease ,SYNAPTIC vesicles ,AMPA receptors ,OLDER people ,GENETIC variation ,DOPAMINE receptors ,DARDARIN ,DOPAMINERGIC neurons - Abstract
Parkinson's disease (PD) is the second most common neurodegenerative disorder in the aging population, and no disease-modifying therapy has been approved to date. The pathogenesis of PD has been related to many dysfunctional cellular mechanisms, however, most of its monogenic forms are caused by pathogenic variants in genes involved in endolysosomal function (LRRK2, VPS35, VPS13C, and ATP13A2) and synaptic vesicle trafficking (SNCA, RAB39B, SYNJ1, and DNAJC6). Moreover, an extensive search for PD risk variants revealed strong risk variants in several lysosomal genes (e.g., GBA1, SMPD1, TMEM175, and SCARB2) highlighting the key role of lysosomal dysfunction in PD pathogenesis. Furthermore, large genetic studies revealed that PD status is associated with the overall "lysosomal genetic burden", namely the cumulative effect of strong and weak risk variants affecting lysosomal genes. In this context, understanding the complex mechanisms of impaired vesicular trafficking and dysfunctional endolysosomes in dopaminergic neurons of PD patients is a fundamental step to identifying precise therapeutic targets and developing effective drugs to modify the neurodegenerative process in PD. [ABSTRACT FROM AUTHOR]
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- 2023
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33. Rab18 maintains homeostasis of subcutaneous adipose tissue to prevent obesity-induced metabolic disorders.
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Liu J, Li L, Xu D, Li Y, Chen T, Liu Y, Bao Y, Wang Y, Yang L, Li P, and Xu L
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- Animals, Female, Humans, Male, Mice, 3T3-L1 Cells, Adipocytes metabolism, Adipose Tissue, Brown metabolism, Inflammation metabolism, Insulin Resistance, Intra-Abdominal Fat metabolism, Lipid Droplets metabolism, Metabolic Diseases metabolism, Metabolic Diseases etiology, Metabolic Diseases prevention & control, Metabolic Diseases genetics, Mice, Inbred C57BL, Mice, Knockout, Triglycerides metabolism, Diet, High-Fat adverse effects, Endoplasmic Reticulum Stress, Homeostasis, Obesity metabolism, Obesity genetics, Obesity etiology, rab GTP-Binding Proteins metabolism, rab GTP-Binding Proteins genetics, Subcutaneous Fat metabolism
- Abstract
Metabolically healthy obesity refers to obese individuals who do not develop metabolic disorders. These people store fat in subcutaneous adipose tissue (SAT) rather than in visceral adipose tissue (VAT). However, the molecules participating in this specific scenario remain elusive. Rab18, a lipid droplet (LD)-associated protein, mediates the contact between the endoplasmic reticulum (ER) and LDs to facilitate LD growth and maturation. In the present study, we show that the protein level of Rab18 is specifically upregulated in the SAT of obese people and mice. Rab18 adipocyte-specific knockout (Rab18 AKO) mice had a decreased volume ratio of SAT to VAT compared with wildtype mice. When subjected to high-fat diet (HFD), Rab18 AKO mice had increased ER stress and inflammation, reduced adiponectin, and decreased triacylglycerol (TAG) accumulation in SAT. In contrast, TAG accumulation in VAT, brown adipose tissue (BAT) or liver of Rab18 AKO mice had a moderate increase without ER stress stimulation. Rab18 AKO mice developed insulin resistance and systematic inflammation. Rab18 AKO mice maintained body temperature in response to acute and chronic cold induction with a thermogenic SAT, similar to the counterpart mice. Furthermore, Rab18-deficient 3T3-L1 adipocytes were more prone to palmitate-induced ER stress, indicating the involvement of Rab18 in alleviating lipid toxicity. Rab18 AKO mice provide a good animal model to investigate metabolic disorders such as impaired SAT. In conclusion, our studies reveal that Rab18 is a key and specific regulator that maintains the proper functions of SAT by alleviating lipid-induced ER stress., (© 2024. Science China Press.)
- Published
- 2024
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34. Author Index.
- Subjects
AUTHORS ,ROSALES ,PANDAS - Published
- 2023
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35. Fecal Metagenomics and Metabolomics Identifying Microbial Signatures in Non-Alcoholic Fatty Liver Disease.
- Author
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Pekkala, Satu
- Subjects
NON-alcoholic fatty liver disease ,MICROBIAL metabolites ,BRANCHED chain amino acids ,METABOLOMICS ,METAGENOMICS ,CARBOHYDRATE metabolism - Abstract
The frequency of non-alcoholic fatty liver disease (NAFLD) has intensified, creating diagnostic challenges and increasing the need for reliable non-invasive diagnostic tools. Due to the importance of the gut–liver axis in the progression of NAFLD, studies attempt to reveal microbial signatures in NAFLD, evaluate them as diagnostic biomarkers, and to predict disease progression. The gut microbiome affects human physiology by processing the ingested food into bioactive metabolites. These molecules can penetrate the portal vein and the liver to promote or prevent hepatic fat accumulation. Here, the findings of human fecal metagenomic and metabolomic studies relating to NAFLD are reviewed. The studies present mostly distinct, and even contradictory, findings regarding microbial metabolites and functional genes in NAFLD. The most abundantly reproducing microbial biomarkers include increased lipopolysaccharides and peptidoglycan biosynthesis, enhanced degradation of lysine, increased levels of branched chain amino acids, as well as altered lipid and carbohydrate metabolism. Among other causes, the discrepancies between the studies may be related to the obesity status of the patients and the severity of NAFLD. In none of the studies, except for one, was diet considered, although it is an important factor driving gut microbiota metabolism. Future studies should consider diet in these analyses. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
36. Roles of the Oxytocin Receptor (OXTR) in Human Diseases.
- Author
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Pierzynowska, Karolina, Gaffke, Lidia, Żabińska, Magdalena, Cyske, Zuzanna, Rintz, Estera, Wiśniewska, Karolina, Podlacha, Magdalena, and Węgrzyn, Grzegorz
- Subjects
OXYTOCIN receptors ,ENDOMETRIOSIS ,GENETIC disorders ,NERVOUS system ,GENE expression ,GENITALIA - Abstract
The oxytocin receptor (OXTR), encoded by the OXTR gene, is responsible for the signal transduction after binding its ligand, oxytocin. Although this signaling is primarily involved in controlling maternal behavior, it was demonstrated that OXTR also plays a role in the development of the nervous system. Therefore, it is not a surprise that both the ligand and the receptor are involved in the modulation of behaviors, especially those related to sexual, social, and stress-induced activities. As in the case of every regulatory system, any disturbances in the structures or functions of oxytocin and OXTR may lead to the development or modulation of various diseases related to the regulated functions, which in this case include either mental problems (autism, depression, schizophrenia, obsessive-compulsive disorders) or those related to the functioning of reproductive organs (endometriosis, uterine adenomyosis, premature birth). Nevertheless, OXTR abnormalities are also connected to other diseases, including cancer, cardiac disorders, osteoporosis, and obesity. Recent reports indicated that the changes in the levels of OXTR and the formation of its aggregates may influence the course of some inherited metabolic diseases, such as mucopolysaccharidoses. In this review, the involvement of OXTR dysfunctions and OXTR polymorphisms in the development of different diseases is summarized and discussed. The analysis of published results led us to suggest that changes in OXTR expression and OXTR abundance and activity are not specific to individual diseases, but rather they influence processes (mostly related to behavioral changes) that might modulate the course of various disorders. Moreover, a possible explanation of the discrepancies in the published results of effects of the OXTR gene polymorphisms and methylation on different diseases is proposed. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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- View/download PDF
37. Spondyloocular Syndrome: A Report of an Additional Family and Phenotypic Spectrum Delineation.
- Author
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Chouery, Eliane, Karam, Rim, Mrad, Yves Najm, Mehawej, Cybel, Dib El Jalbout, Nahia, Bleik, Jamal, Mahfoud, Daniel, and Megarbane, Andre
- Subjects
NONSENSE mutation ,HEARING disorders ,GENETIC disorders ,PHENOTYPES ,SHORT stature - Abstract
Spondyloocular syndrome (SOS, OMIM # 605822) is a rare genetic disorder characterized by osseous and ocular manifestations, including generalized osteoporosis, multiple long bones fractures, platyspondyly, dense cataracts and retinal detachment, and dysmorphic facial features, with or without short stature, cardiopathy, hearing impairment, and intellectual disability. Biallelic mutations in the XYLT2 gene (OMIM * 608125), encoding the xylosyltransferase II, were shown to be responsible for this disease. To date, 22 cases with SOS have been described, with varying clinical presentations and a yet-to-be-established genotypic–phenotypic correlation. Two patients from a consanguineous Lebanese family that presented with SOS were included in this study. Whole exome sequencing revealed a novel homozygous nonsense mutation in XYLT2 (p.Tyr414*) in these patients. We review all previously reported cases with SOS, describe the second nonsense mutation in XYLT2, and contribute to a better delineation of the phenotypic spectrum of the disease. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
38. Genetic Susceptibility to Hepatocellular Carcinoma in Patients with Chronic Hepatitis Virus Infection.
- Author
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Yang, Tsai-Hsuan, Chan, Chi, Yang, Po-Jiun, Huang, Yu-Han, and Lee, Mei-Hsuan
- Subjects
CHRONIC active hepatitis ,HEPATITIS B ,CHRONIC hepatitis B ,HEPATOCELLULAR carcinoma ,HEREDITY ,PLANT viruses - Abstract
Hepatocellular carcinoma (HCC) is one of the leading causes of cancer-related deaths globally. The risk factors for HCC include chronic hepatitis B and C virus infections, excessive alcohol consumption, obesity, metabolic disease, and aflatoxin exposure. In addition to these viral and environmental risk factors, individual genetic predisposition is a major determinant of HCC risk. Familial clustering of HCC has been observed, and a hereditary factor likely contributes to the risk of HCC development. The familial aggregation may depend on a shared environment and genetic background as well as the interactions of environmental and genetic factors. Genome-wide association studies (GWASs) are one of the most practical tools for mapping the patterns of inheritance for the most common form of genomic variation, single nucleotide polymorphisms. This approach is practical for investigating genetic variants across the human genome, which is affected by thousands of common genetic variants that do not follow Mendelian inheritance. This review article summarizes the academic knowledge of GWAS-identified genetic loci and their association with HCC. We summarize the GWASs in accordance with various chronic hepatitis virus infection statuses. This genetic profiling could be used to identify candidate biomarkers to refine HCC screening and management by enabling individual risk-based personalization and stratification. A more comprehensive understanding of the genetic mechanisms underlying individual predisposition to HCC may lead to improvements in the prevention and early diagnosis of HCC and the development of effective treatment strategies. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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- View/download PDF
39. Functionally Validating Evolutionary Conserved Risk Genes for Parkinson's Disease in Drosophila melanogaster.
- Author
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Baisgaard, Amalie Elton, Koldby, Kristina Magaard, Kristensen, Torsten Nygård, Nyegaard, Mette, and Rohde, Palle Duun
- Subjects
PARKINSON'S disease ,DROSOPHILA melanogaster ,DROSOPHILIDAE ,STARTLE reaction ,BIOLOGICAL systems - Abstract
Simple Summary: The neurodegenerative disorder Parkinson's disease (PD) has a multifactorial etiology, and recent large-scale genetic studies have identified more than one hundred regions in the human genome that display statistical association with the risk of developing PD. To understand the disease mechanism better, biological validation of the identified genomic regions is warranted. However, in most studies such validation is absent. The aim of the study was to identify PD-genes that are evolutionary conserved between humans and the vinegar fly, and phenotypically investigate the effect of gene expression knockdown of those genes in the fly model. We identified eleven PD-genes that display strong evolutionary conservatism, and we successfully reduced gene expression in nine of the knockdown lines. A phenotype that previously has been used to investigate PD in a fly model is the flies' innate escape response. We found that gene expression knockdown resulted in a disrupted escape response in eight of the nine knockdown lines. These results provide additional support for potential involvement of these genes in the disease pathology underlying PD. Parkinson's disease (PD) is a heterogeneous and complex neurodegenerative disorder and large-scale genetic studies have identified >130 genes associated with PD. Although genomic studies have been decisive for our understanding of the genetic contributions underlying PD, these associations remain as statistical associations. Lack of functional validation limits the biological interpretation; however, it is labour extensive, expensive, and time consuming. Therefore, the ideal biological system for functionally validating genetic findings must be simple. The study aim was to assess systematically evolutionary conserved PD-associated genes using Drosophila melanogaster. From a literature review, a total of 136 genes have found to be associated with PD in GWAS studies, of which 11 are strongly evolutionary conserved between Homo sapiens and D. melanogaster. By ubiquitous gene expression knockdown of the PD-genes in D. melanogaster, the flies' escape response was investigated by assessing their negative geotaxis response, a phenotype that has previously been used to investigate PD in D. melanogaster. Gene expression knockdown was successful in 9/11 lines, and phenotypic consequences were observed in 8/9 lines. The results provide evidence that genetically modifying expression levels of PD genes in D. melanogaster caused reduced climbing ability of the flies, potentially supporting their role in dysfunctional locomotion, a hallmark of PD. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
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40. From 2D to 3D: Development of Monolayer Dopaminergic Neuronal and Midbrain Organoid Cultures for Parkinson's Disease Modeling and Regenerative Therapy.
- Author
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Yeap, Yee Jie, Teddy, Tng J. W., Lee, Mok Jung, Goh, Micaela, and Lim, Kah Leong
- Subjects
PARKINSON'S disease ,INDUCED pluripotent stem cells ,MESENCEPHALON ,PLURIPOTENT stem cells ,SUBSTANTIA nigra ,DOPAMINERGIC neurons ,DOPAMINE receptors - Abstract
Parkinson's Disease (PD) is a prevalent neurodegenerative disorder that is characterized pathologically by the loss of A9-specific dopaminergic (DA) neurons in the substantia nigra pars compacta (SNpc) of the midbrain. Despite intensive research, the etiology of PD is currently unresolved, and the disease remains incurable. This, in part, is due to the lack of an experimental disease model that could faithfully recapitulate the features of human PD. However, the recent advent of induced pluripotent stem cell (iPSC) technology has allowed PD models to be created from patient-derived cells. Indeed, DA neurons from PD patients are now routinely established in many laboratories as monolayers as well as 3D organoid cultures that serve as useful toolboxes for understanding the mechanism underlying PD and also for drug discovery. At the same time, the iPSC technology also provides unprecedented opportunity for autologous cell-based therapy for the PD patient to be performed using the patient's own cells as starting materials. In this review, we provide an update on the molecular processes underpinning the development and differentiation of human pluripotent stem cells (PSCs) into midbrain DA neurons in both 2D and 3D cultures, as well as the latest advancements in using these cells for drug discovery and regenerative medicine. For the novice entering the field, the cornucopia of differentiation protocols reported for the generation of midbrain DA neurons may seem daunting. Here, we have distilled the essence of the different approaches and summarized the main factors driving DA neuronal differentiation, with the view to provide a useful guide to newcomers who are interested in developing iPSC-based models of PD. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
41. Genetic Polymorphisms and Diversity in Nonalcoholic Fatty Liver Disease (NAFLD): A Mini Review.
- Author
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Sulaiman, Siti Aishah, Dorairaj, Vicneswarry, and Adrus, Muhammad Nafiz Haidi
- Subjects
NON-alcoholic fatty liver disease ,GENETIC polymorphisms ,GENETIC variation ,FATTY liver ,LIVER diseases - Abstract
Nonalcoholic fatty liver disease (NAFLD) is a common liver disease with a wide spectrum of liver conditions ranging from hepatic steatosis to nonalcoholic steatohepatitis (NASH), fibrosis, cirrhosis, and hepatocellular carcinoma. The prevalence of NAFLD varies across populations, and different ethnicities have specific risks for the disease. NAFLD is a multi-factorial disease where the genetics, metabolic, and environmental factors interplay and modulate the disease's development and progression. Several genetic polymorphisms have been identified and are associated with the disease risk. This mini-review discussed the NAFLD's genetic polymorphisms and focusing on the differences in the findings between the populations (diversity), including of those reports that did not show any significant association. The challenges of genetic diversity are also summarized. Understanding the genetic contribution of NAFLD will allow for better diagnosis and management explicitly tailored for the various populations. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
42. Fatty Liver Disease-Alcoholic and Non-Alcoholic: Similar but Different.
- Author
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Malnick, Stephen D. H., Alin, Pavel, Somin, Marina, and Neuman, Manuela G.
- Subjects
FATTY liver ,NON-alcoholic fatty liver disease ,LIVER histology ,ALCOHOL drinking ,ASPARTATE aminotransferase ,LIVER diseases ,LIVER mitochondria - Abstract
In alcohol-induced liver disease (ALD) and in non-alcoholic fatty liver disease (NAFLD), there are abnormal accumulations of fat in the liver. This phenomenon may be related to excessive alcohol consumption, as well as the combination of alcohol consumption and medications. There is an evolution from simple steatosis to steatohepatitis, fibrosis and cirrhosis leading to hepatocellular carcinoma (HCC). Hepatic pathology is very similar regarding non-alcoholic fatty liver disease (NAFLD) and ALD. Initially, there is lipid accumulation in parenchyma and progression to lobular inflammation. The morphological changes in the liver mitochondria, perivenular and perisinusoidal fibrosis, and hepatocellular ballooning, apoptosis and necrosis and accumulation of fibrosis may lead to the development of cirrhosis and HCC. Medical history of ethanol consumption, laboratory markers of chronic ethanol intake, AST/ALT ratio on the one hand and features of the metabolic syndrome on the other hand, may help in estimating the contribution of alcohol intake and the metabolic syndrome, respectively, to liver steatosis. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
43. Rare Variants in Genes of the Cholesterol Pathway Are Present in 60% of Patients with Acute Myocardial Infarction.
- Author
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Pan-Lizcano, Ricardo, Mariñas-Pardo, Luis, Núñez, Lucía, Rebollal-Leal, Fernando, López-Vázquez, Domingo, Pereira, Ana, Molina-Nieto, Aranzazu, Calviño, Ramón, Vázquez-Rodríguez, Jose Manuel, and Hermida-Prieto, Manuel
- Subjects
GENETIC variation ,PERCUTANEOUS coronary intervention ,LIPID metabolism ,MYOCARDIAL infarction ,NUCLEOTIDE sequencing - Abstract
Acute myocardial infarction (AMI) is a pandemic in which conventional risk factors are inadequate to detect who is at risk early in the asymptomatic stage. Although gene variants in genes related to cholesterol, which may increase the risk of AMI, have been identified, no studies have systematically screened the genes involved in this pathway. In this study, we included 105 patients diagnosed with AMI with an elevation of the ST segment (STEMI) and treated with primary percutaneous coronary intervention (PPCI). Using next-generation sequencing, we examined the presence of rare variants in 40 genes proposed to be involved in lipid metabolism and we found that 60% of AMI patients had a rare variant in the genes involved in the cholesterol pathway. Our data show the importance of considering the wide scope of the cholesterol pathway in order to assess the genetic risk related to AMI. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
44. Mucosal Immune System Dysregulation in the Pathogenesis of IgA Nephropathy.
- Author
-
Kano, Toshiki, Suzuki, Hitoshi, Makita, Yuko, Nihei, Yoshihito, Fukao, Yusuke, Nakayama, Maiko, Lee, Mingfeng, Kato, Rina, Aoki, Ryosuke, Yamada, Koshi, Muto, Masahiro, and Suzuki, Yusuke
- Subjects
IGA glomerulonephritis ,IMMUNE system ,PATHOGENESIS ,LYMPHOID tissue ,IMMUNE response ,TONSILLITIS - Abstract
The mucosal immune system, via a dynamic immune network, serves as the first line of defense against exogenous antigens. Mucosal immune system dysregulation is closely associated with the pathogenesis of immunoglobulin A nephropathy (IgAN), as illustrated by IgAN having the clinical feature of gross hematuria, often concurrent with mucosal infections. Notably, previous studies have demonstrated the efficacy of tonsillectomy and found that a targeted-release formulation of budesonide reduced proteinuria in patients with IgAN. However, it remains unclear how exogenous antigens interact with the mucosal immune system to induce or exacerbate IgAN. Thus, in this review, we focus on the dysregulation of mucosal immune response in the pathogenesis of IgAN. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
45. Anderson–Fabry Disease: A New Piece of the Lysosomal Puzzle in Parkinson Disease?
- Author
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Zedde, Marialuisa, Pascarella, Rosario, Cavallieri, Francesco, Pezzella, Francesca Romana, Grisanti, Sara, Di Fonzo, Alessio, and Valzania, Franco
- Subjects
ANGIOKERATOMA corporis diffusum ,PARKINSON'S disease ,CEREBROVASCULAR disease ,LYSOSOMAL storage diseases ,GAUCHER'S disease ,GLYCOGEN storage disease type II - Abstract
Anderson–Fabry disease (AFD) is an inherited lysosomal storage disorder characterized by a composite and multisystemic clinical phenotype and frequent involvement of the central nervous system (CNS). Research in this area has largely focused on the cerebrovascular manifestations of the disease, and very little has been described about further neurological manifestations, which are known in other lysosomal diseases, such as Gaucher disease. In particular, a clinical and neuroimaging phenotype suggesting neurodegeneration as a putative mechanism has never been fully described for AFD, but the increased survival of affected patients with early diagnosis and the possibility of treatment have given rise to some isolated reports in the literature on the association of AFD with a clinical phenotype of Parkinson disease (PD). The data are currently scarce, but it is possible to hypothesize the molecular mechanisms of cell damage that support this association; this topic is worthy of further study in particular in relation to the therapeutic possibilities, which have significantly modified the natural history of the disease but which are not specifically dedicated to the CNS. In this review, the molecular mechanisms underlying this association will be proposed, and the available data with implications for future research and treatment will be rewritten. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
46. Inverse Salt Sensitivity of Blood Pressure Is Associated with an Increased Renin-Angiotensin System Activity.
- Author
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Gildea, John J., Xu, Peng, Schiermeyer, Katie A., Yue, Wei, Carey, Robert M., Jose, Pedro A., and Felder, Robin A.
- Subjects
NUCLEAR factor E2 related factor ,SUPEROXIDES ,RENIN-angiotensin system ,SODIUM-glucose cotransporters ,BLOOD pressure ,SALT-free diet ,HIGH-salt diet - Abstract
High and low sodium diets are associated with increased blood pressure and cardiovascular morbidity and mortality. The paradoxical response of elevated BP in low salt diets, aka inverse salt sensitivity (ISS), is an understudied vulnerable 11% of the adult population with yet undiscovered etiology. A linear relationship between the number of single nucleotide polymorphisms (SNPs) in the dopamine D
2 receptor (DRD2, rs6276 and 6277), and the sodium myo-inositol cotransporter 2 (SLC5A11, rs11074656), as well as decreased expression of these two genes in urine-derived renal proximal tubule cells (uRPTCs) isolated from clinical study participants suggest involvement of these cells in ISS. Insight into this newly discovered paradoxical response to sodium is found by incubating cells in low sodium (LS) conditions that unveil cell physiologic differences that are then reversed by mir-485-5p miRNA blocker transfection and bypassing the genetic defect by DRD2 re-expression. The renin-angiotensin system (RAS) is an important counter-regulatory mechanism to prevent hyponatremia under LS conditions. Oversensitive RAS under LS conditions could partially explain the increased mortality in ISS. Angiotensin-II (AngII, 10 nmol/L) increased sodium transport in uRPTCs to a greater extent in individuals with ISS than SR. Downstream signaling of AngII is verified by identifying lowered expression of nuclear factor erythroid 2-related factor 2 (NRF2), CCCTC-binding factor (CTCF), and manganese-dependent mitochondrial superoxide dismutase (SOD2) only in ISS-derived uRPTCs and not SR-derived uRPTCs when incubated in LS conditions. We conclude that DRD2 and SLC5A11 variants in ISS may cause an increased low sodium sensitivity to AngII and renal sodium reabsorption which can contribute to inverse salt-sensitive hypertension. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
47. Lingguizhugan Decoction Improved Obesity by Modulating the Gut Microbiota and its Metabolites in Mice.
- Author
-
Wang M, Li H, Liu C, Zhang Y, Wu Q, and Yang Y
- Subjects
- Animals, Mice, Male, Mice, Inbred C57BL, Anti-Obesity Agents pharmacology, Feces microbiology, Mice, Obese, Metabolomics, Plant Extracts, Gastrointestinal Microbiome drug effects, Obesity drug therapy, Obesity metabolism, Obesity microbiology, Drugs, Chinese Herbal pharmacology
- Abstract
Background: The global obese population is rapidly increasing, urgently requiring the development of effective and safe weight-loss medications. The classic Chinese medicine formulation Lingguizhugan Decoction has exerted a significant anti-obesity effect. However, the underlying mechanism is still unclear., Objective: This study aimed to explore the mechanism of LGZGD in the treatment of obesity based on the gut microbiota and its metabolites., Methods: Three different dosages of LGZGD were gavaged to ob/ob mice for 8 weeks. Body mass and visceral fat mass were evaluated. Additionally, the changes in gut microbiota, fecal and plasma metabolites in mice after LGZGD treatment were analyzed by metagenomics and non-targeted metabolomics., Results: The results demonstrated a significant anti-obesity effect of LGZGD treatment in ob/ob mice. Furthermore, the metagenomic analysis revealed that LGZGD reduced the ratio of Firmicutes / Bacteroidetes ( F to B ) in the gut, restored gut microbiota diversity, and identified 3 enriched KEGG pathways, including energy metabolism, lipid metabolism, and energy production and conversion pathways. Based on non-targeted metabolomics analysis, 20 key metabolites in the feces and 30 key metabolites in the plasma responding to LGZGD treatment were identified, and the levels of Eicosapentaenoic acid (EPA) and Myristoleic acid (MA) might be the metabolites related to gut microbiota after LGZGD treatment. Their biological functions were mainly related to the metabolism pathway., Conclusions: These findings suggested that LGZGD had therapeutic potential for obesity. The mechanism of LGZGD alleviating obesity was associated with improving dysbiosis of the gut microbiota. LDZGD affected gut microbiota-derived metabolites of EPA and MA and may act on energy metabolism pathways., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)
- Published
- 2024
- Full Text
- View/download PDF
48. Preparation, Characterization, and Anticancer Activity Assessment of Chitosan/TPP Nanoparticles Loaded with Echis carinatus Venom.
- Author
-
Kancha MM, Mehrabi M, Bitaraf FS, Vahedi H, Alizadeh M, and Bernkop-Schnürch A
- Subjects
- Humans, Viper Venoms chemistry, Viper Venoms pharmacology, Cell Proliferation drug effects, Animals, Dose-Response Relationship, Drug, Structure-Activity Relationship, Particle Size, Molecular Structure, Viperidae, Cell Line, Tumor, Echis, Venomous Snakes, Polyphosphates, Chitosan chemistry, Chitosan pharmacology, Nanoparticles chemistry, Antineoplastic Agents pharmacology, Antineoplastic Agents chemistry, Drug Screening Assays, Antitumor, Cell Survival drug effects
- Abstract
Aims and Background: Echis carinatus venom is a toxic substance naturally produced by special glands in this snake species. Alongside various toxic properties, this venom has been used for its therapeutic effects, which are applicable in treating various cancers (liver, breast, etc. )., Objective: Nanotechnology-based drug delivery systems are suitable for protecting Echis carinatus venom against destruction and unwanted absorption. They can manage its controlled transfer and absorption, significantly reducing side effects., Methods: In the present study, chitosan nanoparticles were prepared using the ionotropic gelation method with emulsion cross-linking. The venom's encapsulation efficiency, loading capacity, and release rate were calculated at certain time points. Moreover, the nanoparticles' optimal formulation and cytotoxic effects were determined using the MTT assay., Results: The optimized nanoparticle formulation increases cell death induction in various cancerous cell lines. Moreover, chitosan nanoparticles loaded with Echis carinatus venom had a significant rate of cytotoxicity against cancer cells., Conclusion: It is proposed that this formulation may act as a suitable candidate for more extensive assessments of cancer treatment using nanotechnology-based drug delivery systems., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)
- Published
- 2024
- Full Text
- View/download PDF
49. The Post-Translational Modification Networking in WNK-Centric Hypertension Regulation and Electrolyte Homeostasis.
- Author
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Lin, Shiuan-Chen, Ma, Chun, Chang, Kao-Jung, Cheong, Han-Ping, Lee, Ming-Cheng, Lan, Yuan-Tzu, Wang, Chien-Ying, Chiou, Shih-Hwa, Huo, Teh-Ia, Hsu, Tsui-Kang, Tsai, Ping-Hsing, and Yang, Yi-Ping
- Subjects
SERINE/THREONINE kinases ,HOMEOSTASIS ,SMALL molecules ,PROTEIN kinases ,POTASSIUM channels ,BLOOD pressure ,POTASSIUM ,EFFECT of salt on plants - Abstract
The with-no-lysine (WNK) kinase family, comprising four serine-threonine protein kinases (WNK1-4), were first linked to hypertension due to their mutations in association with pseudohypoaldosteronism type II (PHAII). WNK kinases regulate crucial blood pressure regulators, SPAK/OSR1, to mediate the post-translational modifications (PTMs) of their downstream ion channel substrates, such as sodium chloride co-transporter (NCC), epithelial sodium chloride (ENaC), renal outer medullary potassium channel (ROMK), and Na/K/2Cl co-transporters (NKCCs). In this review, we summarize the molecular pathways dysregulating the WNKs and their downstream target renal ion transporters. We summarize each of the genetic variants of WNK kinases and the small molecule inhibitors that have been discovered to regulate blood pressure via WNK-triggered PTM cascades. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
50. SARS-CoV-2 and Skin: New Insights and Perspectives.
- Author
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Cazzato, Gerardo, Cascardi, Eliano, Colagrande, Anna, Foti, Caterina, Stellacci, Alessandra, Marrone, Maricla, Ingravallo, Giuseppe, Arezzo, Francesca, Loizzi, Vera, Solimando, Antonio Giovanni, Parente, Paola, Maiorano, Eugenio, Cormio, Gennaro, Vacca, Angelo, and Resta, Leonardo
- Subjects
SARS-CoV-2 ,COVID-19 pandemic ,SWEAT glands ,ANGIOTENSIN converting enzyme ,CUTANEOUS manifestations of general diseases ,RESPIRATORY organs ,SKIN - Abstract
The SARS-CoV-2 pandemic has disrupted global health systems and brought the entire globe to its knees. Although born as a disease of the respiratory system, COVID-19 can affect different parts of the body, including the skin. Reports of ongoing skin manifestations of COVID-19 have gradually multiplied, pushing researchers to investigate the etiopathogenic mechanisms underlying these phenomena in more depth. In an attempt to investigate the possible association between SARS-CoV-2, ACE2, TMPRSS2 and skin manifestations, we performed immunohistochemical investigations of the ACE2 receptor and TMPRSS2 in nine skin samples from SARS-CoV-2-positive patients compared to a cohort of healthy controls. Furthermore, after consulting public databases regarding ACE2 mRNA expression in various cell populations resident in the skin, we conducted a literature review aimed at outlining the current state of this topic. We did not find statistically different immuno-expression of ACE2 and TMPRSS2 between the group of SARS-CoV-2-positive patients (nine skin biopsies) and the control group. Regarding ACE2, major immunolabeling was present in the epidermal keratinocytes and, rarely, in the fibroblasts and in the adenomeres of the eccrine sweat glands. Regarding the immune expression of TMPRSS2, we found no significant differences between the two groups, with a weak immune staining only in some skin cytotypes. From the review of the literature, we isolated 35 relevant articles according to the inclusion criteria adopted. ACE2 appears to be a target of SARS-CoV-2, although, other receptor molecules may potentially be implicated, such as TMPRSS2. Future studies with large cases and different molecular investigative methods are needed to further elucidate the mechanisms underlying the skin manifestations of SARS-CoV-2. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
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